Vaccine Information and Consent Knowledge base (VICK)
type: Ontology
contributor: Yongqun "Oliver" He
description: VICK is an application graph to describe vaccine immunization information. VICK is built on OMRSE and VICO, and based on metadata from Texas immunization records for patients
created by: Kevin Pasquette
created by: Tuan Amith

BFO OWL specification label
type: AnnotationProperty
editor preferred term: BFO OWL specification label
definition: Relates an entity in the ontology to the name of the variable that is used to represent it in the code that generates the BFO OWL file from the lispy specification.
curator note: Really of interest to developers only
sub property of: label

BFO CLIF specification label
type: AnnotationProperty
editor preferred term: BFO CLIF specification label
definition: Relates an entity in the ontology to the term that is used to represent it in the the CLIF specification of BFO2
definition source: Person:Alan Ruttenberg
curator note: Really of interest to developers only
sub property of: label

editor preferred term
type: AnnotationProperty
editor preferred term: editor preferred term
editor preferred term: editor preferred term~editor preferred label
has curation status: ready for release
definition: The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)
definition editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
label: editor preferred label
label: editor preferred term~editor preferred label

example of usage
type: AnnotationProperty
editor preferred term: example
editor preferred term: example of usage
has curation status: ready for release
definition: A phrase describing how a class name should be used. May also include other kinds of examples that facilitate immediate understanding of a class semantics, such as widely known prototypical subclasses or instances of the class. Although essential for high level terms, examples for low level terms (e.g., Affymetrix HU133 array) are not
definition: A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold.
definition editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

in branch
type: AnnotationProperty
editor preferred term: in branch
definition: An annotation property indicating which module the terms belong to. This is currently experimental and not implemented yet.
definition editor: GROUP:OBI
definition source: OBI_0000277

has curation status
type: AnnotationProperty
editor preferred term: has curation status
definition editor: PERSON:Alan Ruttenberg
definition editor: PERSON:Bill Bug
definition editor: PERSON:Melanie Courtot
definition source: OBI_0000281

definition
type: AnnotationProperty
editor preferred term: definition
has curation status: ready for release
definition: The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
definition: The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.
editor note: 2012-04-05: Barry Smith The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. Can you fix to something like: A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. Alan Ruttenberg Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. On the specifics of the proposed definition: We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with.
definition editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
label: textual definition

editor note
type: AnnotationProperty
editor preferred term: editor note
has curation status: ready for release
definition: An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.
definition editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obfoundry.org/obo/obi>
definition source: GROUP:OBI:<http://purl.obofoundry.org/obo/obi>
database_cross_reference: IAO:0000116
has_obo_namespace: uberon
id: editor_note
is metadata tag: 1
shorthand: editor_note

definition editor
type: AnnotationProperty
editor preferred term: definition editor
editor preferred term: term editor
has curation status: ready for release
definition: Name of editor entering the definition in the file. The definition editor is a point of contact for information regarding the term. The definition editor may be, but is not always, the author of the definition, which may have been worked upon by several people
definition: Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people
editor note: 20110707, MC: label update to term editor and definition modified accordingly. See http://code.google.com/p/information-artifact-ontology/issues/detail?id=115.
editor note: 20110707, MC: label update to term editor and definition modified accordingly. See https://github.com/information-artifact-ontology/IAO/issues/115.
definition editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
label: term editor

alternative term
type: AnnotationProperty
editor preferred term: alternative label
editor preferred term: alternative term
has curation status: pending final vetting
definition: A label for a class or property that can be used to refer to the class or property instead of the preferred rdfs:label. Alternative labels should be used to indicate community- or context-specific labels, abbreviations, shorthand forms and the like.
definition: An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)
definition editor: OBO Operations committee
definition editor: PERSON:Daniel Schober
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
comment: Consider re-defing to: An alternative name for a class or property which can mean the same thing as the preferred name (semantically equivalent, narrow, broad or related).
label: alternative label

definition source
type: AnnotationProperty
editor preferred term: definition source
has curation status: ready for release
definition: Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007
definition: formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007
definition editor: PERSON:Daniel Schober
definition source: Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

has obsolescence reason
type: AnnotationProperty
editor preferred term: has obsolescence reason
definition: Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification.
definition editor: PERSON:Alan Ruttenberg
definition editor: PERSON:Melanie Courtot

curator note
type: AnnotationProperty
editor preferred term: curator note
has curation status: ready for release
definition: An administrative note of use for a curator but of no use for a user
definition editor: PERSON:Alan Ruttenberg
database_cross_reference: IAO:0000232
has_obo_namespace: uberon
id: curator_notes
is metadata tag: 1
shorthand: curator_notes
label: curator notes

term tracker item
type: AnnotationProperty
editor preferred term: term tracker item
example of usage: the URI for an OBI Terms ticket at sourceforge, such as https://sourceforge.net/p/obi/obi-terms/772/
has curation status: pending final vetting
definition: An IRI or similar locator for a request or discussion of an ontology term.
definition editor: Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg
definition source: Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg
comment: The 'tracker item' can associate a tracker with a specific ontology term.

ontology term requester
type: AnnotationProperty
editor preferred term: ontology term requester
has curation status: pending final vetting
definition: The name of the person, project, or organization that motivated inclusion of an ontology term by requesting its addition.
definition editor: Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg
definition source: Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg
comment: The 'term requester' can credit the person, organization or project who request the ontology term.

is denotator type
type: AnnotationProperty
editor preferred term: is denotator type
definition: Relates an class defined in an ontology, to the type of it's denotator
editor note: In OWL 2 add AnnotationPropertyRange('is denotator type' 'denotator type')
definition editor: Alan Ruttenberg

imported from
type: AnnotationProperty
editor preferred term: imported from
has curation status: pending final vetting
definition: For external terms/classes, the ontology from which the term was imported
definition editor: PERSON:Alan Ruttenberg
definition editor: PERSON:Melanie Courtot
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>

expand expression to
type: AnnotationProperty
editor preferred term: expand expression to
example of usage: ObjectProperty: RO_0002104 Label: has plasma membrane part Annotations: IAO_0000424 "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.org/obo/owl/GO#GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
definition: A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones
definition editor: Chris Mungall

expand assertion to
type: AnnotationProperty
editor preferred term: expand assertion to
example of usage: ObjectProperty: RO??? Label: spatially disjoint from Annotations: expand_assertion_to "DisjointClasses: (http://purl.obolibrary.org/obo/BFO_0000051 some ?X) (http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)"
definition: A macro expansion tag applied to an annotation property which can be expanded into a more detailed axiom.
definition editor: Chris Mungall

first order logic expression
type: AnnotationProperty
editor preferred term: first order logic expression
definition editor: PERSON:Alan Ruttenberg

antisymmetric property
type: AnnotationProperty
editor preferred term: antisymmetric property
example of usage: part_of antisymmetric property xsd:true
definition: Use boolean value xsd:true to indicate that the property is an antisymmetric property
definition editor: Alan Ruttenberg
sub property of: logical characteristic of object property

OBO foundry unique label
type: AnnotationProperty
editor preferred term: OBO foundry unique label
has curation status: pending final vetting
definition: An alternative name for a class or property which is unique across the OBO Foundry.
editor note: The intended usage of that property is as follow: OBO foundry unique labels are automatically generated based on regular expressions provided by each ontology, so that SO could specify unique label = 'sequence ' + [label], etc. , MA could specify 'mouse + [label]' etc. Upon importing terms, ontology developers can choose to use the 'OBO foundry unique label' for an imported term or not. The same applies to tools .
definition editor: PERSON:Alan Ruttenberg
definition editor: PERSON:Bjoern Peters
definition editor: PERSON:Chris Mungall
definition editor: PERSON:Melanie Courtot
definition source: GROUP:OBO Foundry <http://obofoundry.org/>

has ID digit count
type: AnnotationProperty
editor preferred term: has ID digit count
example of usage: Ontology: <http://purl.obolibrary.org/obo/ro/idrange/> Annotations: 'has ID prefix': "http://purl.obolibrary.org/obo/RO_" 'has ID digit count' : 7, rdfs:label "RO id policy" 'has ID policy for': "RO"
definition: Relates an ontology used to record id policy to the number of digits in the URI. The URI is: the 'has ID prefix" annotation property value concatenated with an integer in the id range (left padded with "0"s to make this many digits)
definition editor: Person:Alan Ruttenberg

has ID range allocated to
type: AnnotationProperty
editor preferred term: has ID range allocated
example of usage: Datatype: idrange:1 Annotations: 'has ID range allocated to': "Chris Mungall" EquivalentTo: xsd:integer[> 2151 , <= 2300]
definition: Relates a datatype that encodes a range of integers to the name of the person or organization who can use those ids constructed in that range to define new terms
definition editor: Person:Alan Ruttenberg

has ID policy for
type: AnnotationProperty
editor preferred term: has ID policy for
example of usage: Ontology: <http://purl.obolibrary.org/obo/ro/idrange/> Annotations: 'has ID prefix': "http://purl.obolibrary.org/obo/RO_" 'has ID digit count' : 7, rdfs:label "RO id policy" 'has ID policy for': "RO"
definition: Relating an ontology used to record id policy to the ontology namespace whose policy it manages
definition editor: Person:Alan Ruttenberg

has ID prefix
type: AnnotationProperty
editor preferred term: has ID prefix
example of usage: Ontology: <http://purl.obolibrary.org/obo/ro/idrange/> Annotations: 'has ID prefix': "http://purl.obolibrary.org/obo/RO_" 'has ID digit count' : 7, rdfs:label "RO id policy" 'has ID policy for': "RO"
definition: Relates an ontology used to record id policy to a prefix concatenated with an integer in the id range (left padded with "0"s to make this many digits) to construct an ID for a term being created.
definition editor: Person:Alan Ruttenberg

elucidation
type: AnnotationProperty
editor preferred term: elucidation
definition editor: person:Alan Ruttenberg
definition source: Person:Barry Smith
elucidation: Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms

has associated axiom(nl)
type: AnnotationProperty
editor preferred term: has associated axiom(nl)
definition editor: Person:Alan Ruttenberg
definition source: Person:Alan Ruttenberg
elucidation: An axiom associated with a term expressed using natural language

has associated axiom(fol)
type: AnnotationProperty
editor preferred term: has associated axiom(fol)
definition editor: Person:Alan Ruttenberg
definition source: Person:Alan Ruttenberg
elucidation: An axiom expressed in first order logic using CLIF syntax

is allocated id range
type: AnnotationProperty
editor preferred term: is allocated id range
definition: Relates an ontology IRI to an (inclusive) range of IRIs in an OBO name space. The range is give as, e.g. "IAO_0020000-IAO_0020999"
definition editor: PERSON:Alan Ruttenberg
comment: Add as annotation triples in the granting ontology

retired from use as of
type: AnnotationProperty
editor preferred term: retired from use as of
definition: relates a class of CRID to the date after which further instances should not be made, according to the central authority
editor note: In OWL 2 add AnnotationPropertyRange xsd:dateTimeStamp
definition editor: Alan Ruttenberg

has ontology root term
type: AnnotationProperty
editor preferred term: has ontology root term
definition: Ontology annotation property. Relates an ontology to a term that is a designated root term of the ontology. Display tools like OLS can use terms annotated with this property as the starting point for rendering the ontology class hierarchy. There can be more than one root.
definition editor: Nicolas Matentzoglu

may be identical to
type: AnnotationProperty
editor preferred term: may be identical to
definition: A annotation relationship between two terms in an ontology that may refer to the same (natural) type but where more evidence is required before terms are merged.
definition editor: David Osumi-Sutherland
term tracker item: #40
ontology term requester: VFB
comment: Edges asserting this should be annotated with to record evidence supporting the assertion and its provenance.

scheduled for obsoletion on or after
type: AnnotationProperty
editor preferred term: scheduled for obsoletion on or after
definition: Used when the class or object is scheduled for obsoletion/deprecation on or after a particular date.
definition editor: Chris Mungall, Jie Zheng
term tracker item: https://github.com/geneontology/go-ontology/issues/15532
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/32
ontology term requester: GO ontology
range: dateTime

has axiom label
type: AnnotationProperty
editor preferred term: has axiom id
definition editor: Person:Alan Ruttenberg
definition source: Person:Alan Ruttenberg
elucidation: A URI that is intended to be unique label for an axiom used for tracking change to the ontology. For an axiom expressed in different languages, each expression is given the same URI

term replaced by
type: AnnotationProperty
editor preferred term: term replaced by
has curation status: pending final vetting
definition: Use on obsolete terms, relating the term to another term that can be used as a substitute
definition editor: Person:Alan Ruttenberg
definition source: Person:Alan Ruttenberg
comment: Add as annotation triples in the granting ontology

term_mapping_to_UMLS
type: AnnotationProperty
sub property of: seeAlso

term_mapping_to_NCIT
type: AnnotationProperty
sub property of: seeAlso

term_mapping_to_HL7v3
type: AnnotationProperty
sub property of: seeAlso

has_MedDRA_id
type: AnnotationProperty

has_specified_input
type: AnnotationProperty
type: ObjectProperty
equivalent property:
  inverse of: is_specified_input_of
sub property of: has participant
inverse of: is_specified_input_of
domain: planned process
editor preferred term: has_specified_input
example of usage: see is_input_of example_of_usage
has curation status: ready for release
definition: A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.
definition: The inverse property of is_specified_input_of
editor note: 8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works.
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Bjoern Peters
definition editor: PERSON: Larry Hunter
definition editor: PERSON: Melanie Coutot
imported from: ico.owl
imported from: obi.owl
imported from: vo.owl

has_specified_output
type: AnnotationProperty
type: ObjectProperty
equivalent property:
  inverse of: is specified output of
sub property of: has participant
inverse of: is specified output of
domain: planned process
editor preferred term: has specified output
editor preferred term: has_specified_output
has curation status: ready for release
definition: A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.
definition: The inverse property of is specified output of
definition: The inverse property of is_specified_output_of
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Bjoern Peters
definition editor: PERSON: Larry Hunter
definition editor: PERSON: Melanie Courtot
imported from: ico.owl
imported from: obi.owl
imported from: vo.owl
label: has specified output

ISA alternative term
type: AnnotationProperty
editor preferred term: ISA alternative term
has curation status: ready for release
definition: An alternative term used by the ISA tools project (http://isa-tools.org).
definition editor: Person: Alejandra Gonzalez-Beltran
definition editor: Person: Philippe Rocca-Serra
definition source: ISA tools project (http://isa-tools.org)
sub property of: alternative term

organism NCBITaxon ID
type: AnnotationProperty
definition: The NCBITaxon ontology ID of an organism.
definition editor: Oliver He, Yue Liu

logical characteristic of object property
type: AnnotationProperty
definition: This is an annotation used on an object property to indicate a logical characterstic beyond what is possible in OWL.
definition source: OBO Operations call
created by: http://orcid.org/0000-0001-5208-3432

defined by construct
type: AnnotationProperty
example of usage: 'part disjoint with' 'defined by construct' """ PREFIX owl: <http://www.w3.org/2002/07/owl#> PREFIX : <http://example.org/ CONSTRUCT { [ a owl:Restriction ; owl:onProperty :part_of ; owl:someValuesFrom ?a ; owl:disjointWith [ a owl:Restriction ; owl:onProperty :part_of ; owl:someValuesFrom ?b ] ] } WHERE { ?a :part_disjoint_with ?b . }
definition: Links an annotation property to a SPARQL CONSTRUCT query which is meant to provide semantics for a shortcut relation.
term tracker item: https://github.com/ontodev/robot/issues/963
contributor: https://orcid.org/0000-0002-7356-1779
contributor: https://orcid.org/0000-0002-8688-6599

abbreviation
type: AnnotationProperty
example of usage: CHEBI:26523 (reactive oxygen species) has an exact synonym (ROS), which is of type OMO:0003000 (abbreviation)
definition: A synonym type for describing abbreviations or initalisms
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/122
contributor: https://orcid.org/0000-0003-4423-4370
created: 2023-03-03
sub property of: SynonymTypeProperty

ambiguous synonym
type: AnnotationProperty
definition: A synonym type for describing ambiguous synonyms
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/122
contributor: https://orcid.org/0000-0003-4423-4370
created: 2023-03-03
sub property of: SynonymTypeProperty

dubious synonym
type: AnnotationProperty
definition: A synonym type for describing dubious synonyms
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/122
contributor: https://orcid.org/0000-0003-4423-4370
created: 2023-03-03
sub property of: SynonymTypeProperty

layperson synonym
type: AnnotationProperty
example of usage: EFO:0006346 (severe cutaneous adverse reaction) has an exact synonym (scar), which is of the type OMO:0003003 (layperson synonym)
definition: A synonym type for describing layperson or colloquial synonyms
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/122
contributor: https://orcid.org/0000-0003-4423-4370
created: 2023-03-03
sub property of: SynonymTypeProperty

plural form
type: AnnotationProperty
example of usage: CHEBI:23367 (molecular entity) has an exact synonym (molecular entities), which is of the type OMO:0003004 (plural form)
definition: A synonym type for describing pluralization synonyms
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/122
contributor: https://orcid.org/0000-0003-4423-4370
created: 2023-03-03
sub property of: SynonymTypeProperty

UK spelling synonym
type: AnnotationProperty
example of usage: CHEBI:16189 (sulfate) has an exact synonym (sulphate), which is of the type OMO:0003005 (UK spelling synonym)
definition: A synonym type for describing UK spelling variants
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/122
contributor: https://orcid.org/0000-0003-4423-4370
created: 2023-03-03
sub property of: SynonymTypeProperty

misspelling
type: AnnotationProperty
definition: A synonym type for common misspellings
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/132
contributor: https://orcid.org/0000-0003-4423-4370
created: 2023-03-03
sub property of: SynonymTypeProperty

misnomer
type: AnnotationProperty
definition: A synonym type for misnomers, i.e., a synonym that is not technically correct but is commonly used anyway
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/133
contributor: https://orcid.org/0000-0003-4423-4370
created: 2023-03-03
sub property of: SynonymTypeProperty

previous name
type: AnnotationProperty
example of usage: MAPT, the gene that encodes the Tau protein, has a previous name DDPAC. Note: in this case, the name type is more specifically the gene symbol.
definition: A synonym type for names that have been used as primary labels in the past.
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/139
contributor: https://orcid.org/0000-0003-4423-4370
created: 2023-07-25
sub property of: SynonymTypeProperty

legal name
type: AnnotationProperty
example of usage: The legal name for Harvard University (https://ror.org/03vek6s52) is President and Fellows of Harvard College
definition: A synonym type for the legal entity name
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/141
contributor: https://orcid.org/0000-0003-4423-4370
created: 2023-07-27
sub property of: SynonymTypeProperty

International Nonproprietary Name
type: AnnotationProperty
example of usage: CHEBI:46195 has been assigned the english International Nonproproprietary Name (INN) "paracetamol". In some cases such as this one, the INN might be the same as the ontology's primary label
definition: The International Nonproprietary Name (INN) is a standardize name for a pharmaceutical drug or active ingredient issued by the World Health Organization (WHO) meant to address the issues with country- or language-specific brand names. These are issued in several languages, including English, Latin, French, Russian, Spanish, Arabic, and Chinese.
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/149
contributor: https://orcid.org/0000-0003-4423-4370
created: 2023-09-30
has_exact_synonym: INN
sub property of: SynonymTypeProperty

latin term
type: AnnotationProperty
example of usage: nasopharynx (UBERON:0001728) has the latin name "pars nasalis pharyngis
definition: A synonym type for describing Latin term synonyms.
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/146
contributor: https://orcid.org/0000-0002-1773-2692
created: 2023-10-12
sub property of: SynonymTypeProperty

acronym
type: AnnotationProperty
example of usage: NASA is an word acronym for the US National Aeronautics and Space Administration because the acronym is pronounced. FBI is an initialism (also known as alphabetism) for the US Federal Bureau of Investigation since the letters are pronounced one at a time. JPEG is an acronym for Joint Photographic Experts Group but does not count as a word acronym nor an initialism since it is mixed how it is pronounced.
definition: A synonym type for describing abbreviations that are a part of the full name's words, such as initialisms or alphabetisms.
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/135
contributor: https://orcid.org/0000-0003-4423-4370
created: 2023-11-01
sub property of: SynonymTypeProperty

has symbol
type: AnnotationProperty
example of usage: A serial number such as "12324X"; a stop sign; a written proper name such as "OBI
definition: An information content entity that is a mark(s) or character(s) used as a conventional representation of another entity.
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/144
contributor: https://orcid.org/0000-0002-6523-4866
created: 2024-03-25

U.S. Census PUMS serial number
type: AnnotationProperty
definition: The PUMS serial number assigned to a housing unit, which is only unique within each state, and which explicitly links the housing unit record with person records in PUMS data.

ISO 639-1 code
type: AnnotationProperty
editor preferred term: ISO 639-1 code
definition editor: William R. Hogan
comment: ISO 639-1 assigns two-character identifiers to individual human languages. This annotation property is for use in annotating OWL2 individuals in OMRSE that represent languages with their appropriate ISO 639-1 code that designates them in that standard system.

ISO 639-2/B code
type: AnnotationProperty
editor preferred term: ISO 639-2/B code
definition editor: William R. Hogan
comment: ISO 639-2/B assigns three-character identifiers to individual human languages. This annotation property is for use in annotating OWL2 individuals in OMRSE that represent languages with their appropriate ISO 639-2/B ('B' is for "bibliographic applications") code that designates them in that standard system.

ISO 639-2/T code
type: AnnotationProperty
editor preferred term: ISO 639-2/T code
definition editor: William R. Hogan
comment: ISO 639-2/T assigns three-character identifiers to individual human languages. This annotation property is for use in annotating OWL2 individuals in OMRSE that represent languages with their appropriate ISO 639-2/T ('T' is for "terminology applications") code that designates them in that standard system.

ISO 639-3 code
type: AnnotationProperty
editor preferred term: ISO 639-3 code
definition editor: William R. Hogan
comment: ISO 639-3 assigns three-character identifiers to individual human languages. This annotation property is for use in annotating OWL2 individuals in OMRSE that represent languages with their appropriate ISO 639-3 code that designates them in that standard system.

OOSTT user-centered description
type: AnnotationProperty
definition: A description of an OOSTT class that is aimed at the OOSTT user community and not meant to be definition for use in ontology development, curation or maintenance.
definition editor: Mathias Brochhausen

temporal interpretation
type: AnnotationProperty
editor preferred term: temporal interpretation
definition: An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.
sub property of: logical macro assertion on an object property

logical macro assertion
type: AnnotationProperty
definition: An assertion that involves at least one OWL object that is intended to be expanded into one or more logical axioms. The logical expansion can yield axioms expressed using any formal logical system, including, but not limited to OWL2-DL.

logical macro assertion on a property
type: AnnotationProperty
definition: A logical macro assertion whose domain is an IRI for a property
sub property of: logical macro assertion

logical macro assertion on an object property
type: AnnotationProperty
sub property of: logical macro assertion on a property

is a defining property chain axiom
type: AnnotationProperty
definition: If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL

is a defining property chain axiom where second argument is reflexive
type: AnnotationProperty
definition: If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.

has_rank
type: AnnotationProperty
definition: A metadata relation between a class and its taxonomic rank (eg species, family)
has_obo_namespace: ncbi_taxonomy

eco subset
type: AnnotationProperty
sub property of: subset_property

Creator
type: AnnotationProperty
label: creator

Source
type: AnnotationProperty

subset_property
type: AnnotationProperty

has_alternative_id
type: AnnotationProperty

has_broad_synonym
type: AnnotationProperty
definition: An alternative label for a class or property which has a more general meaning than the preferred name/primary label.
definition editor: http://orcid.org/0000-0001-5208-3432
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/18
label: has broad synonym
sub property of: alternative term

database_cross_reference
type: AnnotationProperty
example of usage: disease characteristic (MONDO:0021125) has cross-reference (http://www.geneontology.org/formats/oboInOwl#hasDbXref) "NCIT:C41009"^^xsd:string
definition: An annotation property that links an ontology entity or a statement to a prefixed identifier or URI.
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/123
contributor: https://orcid.org/0000-0002-7356-1779
created: 2024-03-18
label: has cross-reference

has_exact_synonym
type: AnnotationProperty
definition: An alternative label for a class or property which has the exact same meaning than the preferred name/primary label.
definition editor: http://orcid.org/0000-0001-5208-3432
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/20
label: has exact synonym
sub property of: alternative term

has narrow synonym
type: AnnotationProperty
definition: An alternative label for a class or property which has a more specific meaning than the preferred name/primary label.
definition editor: http://orcid.org/0000-0001-5208-3432
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/19
sub property of: alternative term

has_obo_namespace
type: AnnotationProperty

has_related_synonym
type: AnnotationProperty
definition: An alternative label for a class or property that has been used synonymously with the primary term name, but the usage is not strictly correct.
definition editor: http://orcid.org/0000-0001-5208-3432
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/21
label: has related synonym
sub property of: alternative term

in_subset
type: AnnotationProperty

shorthand
type: AnnotationProperty

label
type: AnnotationProperty

part of
type: ObjectProperty
sub property of: overlaps
inverse of: has part
type: TransitiveProperty
editor preferred term: is part of
editor preferred term: part of
example of usage: my brain is part of my body (continuant parthood, two material entities)
example of usage: my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)
example of usage: this day is part of this year (occurrent parthood)
definition: a core relation that holds between a part and its whole
editor note: Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.
editor note: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
editor note: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
editor note: Parthood as a relation between instances: The primitive instance-level relation p part_of p1 is illustrated in assertions such as: this instance of rhodopsin mediated phototransduction part_of this instance of visual perception. This relation satisfies at least the following standard axioms of mereology: reflexivity (for all p, p part_of p); anti-symmetry (for all p, p1, if p part_of p1 and p1 part_of p then p and p1 are identical); and transitivity (for all p, p1, p2, if p part_of p1 and p1 part_of p2, then p part_of p2). Analogous axioms hold also for parthood as a relation between spatial regions. For parthood as a relation between continuants, these axioms need to be modified to take account of the incorporation of a temporal argument. Thus for example the axiom of transitivity for continuants will assert that if c part_of c1 at t and c1 part_of c2 at t, then also c part_of c2 at t. Parthood as a relation between classes: To define part_of as a relation between classes we again need to distinguish the two cases of continuants and processes, even though the explicit reference to instants of time now falls away. For continuants, we have C part_of C1 if and only if any instance of C at any time is an instance-level part of some instance of C1 at that time, as for example in: cell nucleus part_ of cell.
editor note: Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.
alternative term: part_of
imported from: BFO
imported from: ico.owl
imported from: obi.owl
imported from: ro.owl
imported from: vo.owl
temporal interpretation: axiom holds for all times
RO_0040042: continuant
RO_0040042: occurrent
RO_0040042: independent continuant
RO_0040042: realizable entity
RO_0040042: quality
RO_0040042: specifically dependent continuant
RO_0040042: generically dependent continuant
Source: http://www.obofoundry.org/ro/#OBO_REL:part_of
in_subset: valid for go annotation extension
in_subset: valid for go gp2term
in_subset: valid for go ontology
in_subset: valid for gocam

has part
type: ObjectProperty
sub property of: overlaps
type: TransitiveProperty
editor preferred term: has part
example of usage: my body has part my brain (continuant parthood, two material entities)
example of usage: my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)
example of usage: this year has part this day (occurrent parthood)
definition: a core relation that holds between a whole and its part
editor note: Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.
editor note: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
editor note: Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
editor note: Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.
alternative term: has_part
imported from: BFO
imported from: ico.owl
imported from: obi.owl
imported from: ogg.owl
imported from: ro.owl
imported from: vo.owl
temporal interpretation: axiom holds for all times
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam

inheres in at all times
type: ObjectProperty
sub property of: specifically depends on at all times
domain: specifically dependent continuant
range: Class
  intersection of: independent continuant
  intersection of: Class
    complement of: spatial region
BFO OWL specification label: inheres-in_at
BFO CLIF specification label: inheresInAt
definition: b inheres_in c at t =Def. b is a dependent continuant & c is an independent continuant that is not a spatial region & b s-depends_on c at t. (axiom label in BFO2 Reference: [051-002])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'inheres in at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'inheres in@en(x,y,t)'.
editor note: BFO 2 Reference: Inherence is a subrelation of s-depends_on which holds between a dependent continuant and an independent continuant that is not a spatial region. Since dependent continuants cannot migrate from one independent continuant bearer to another, it follows that if b s-depends_on independent continuant c at some time, then b s-depends_on c at all times at which a exists. Inherence is in this sense redundantly time-indexed.For example, consider the particular instance of openness inhering in my mouth at t as I prepare to take a bite out of a donut, followed by a closedness at t+1 when I bite the donut and start chewing. The openness instance is then shortlived, and to say that it s-depends_on my mouth at all times at which this openness exists, means: at all times during this short life. Every time you make a fist, you make a new (instance of the universal) fist. (Every time your hand has the fist-shaped quality, there is created a new instance of the universal fist-shaped quality.)
editor note: BFO2 Reference: independent continuant that is not a spatial region
editor note: BFO2 Reference: specifically dependent continuant
imported from: ogg.owl
imported from: vo.owl
has associated axiom(fol): (iff (inheresInAt a b t) (and (DependentContinuant a) (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))) // axiom label in BFO2 CLIF: [051-002]

bearer of at some time
type: ObjectProperty
sub property of: has specific dependent at some time
domain: Class
  intersection of: independent continuant
  intersection of: Class
    complement of: spatial region
range: specifically dependent continuant
BFO OWL specification label: bearer-of_st
BFO CLIF specification label: bearerOfAt
definition: b bearer_of c at t =Def. c s-depends_on b at t & b is an independent continuant that is not a spatial region. (axiom label in BFO2 Reference: [053-004])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'bearer of at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'bearer of@en'(x,y,t)
editor note: BFO2 Reference: independent continuant that is not a spatial region
editor note: BFO2 Reference: specifically dependent continuant
imported from: vo.owl
has associated axiom(fol): (iff (bearerOfAt a b t) (and (specificallyDependsOnAt b a t) (IndependentContinuant a) (not (SpatialRegion a)) (existsAt b t))) // axiom label in BFO2 CLIF: [053-004]

realized in
type: ObjectProperty
inverse of: realizes
domain: realizable entity
range: process
BFO OWL specification label: realized-in
BFO CLIF specification label: realizedIn
editor preferred term: realized in
example of usage: this disease is realized in this disease course
example of usage: this fragility is realized in this shattering
example of usage: this investigator role is realized in this investigation
alternative term: is realized by
alternative term: realized_in
imported from: ico.owl
imported from: obi.owl
imported from: vo.owl
elucidation: [copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
has associated axiom(nl): if a realizable entity b is realized in a process p, then p stands in the has_participant relation to the bearer of b. (axiom label in BFO2 Reference: [106-002])
has associated axiom(fol): (forall (x y z t) (if (and (RealizableEntity x) (Process y) (realizesAt y x t) (bearerOfAt z x t)) (hasParticipantAt y z t))) // axiom label in BFO2 CLIF: [106-002]
comment: Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process

realizes
type: ObjectProperty
domain: process
range: realizable entity
BFO OWL specification label: realizes
BFO CLIF specification label: realizes
editor preferred term: realizes
example of usage: this disease course realizes this disease
example of usage: this investigation realizes this investigator role
example of usage: this shattering realizes this fragility
definition: Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
imported from: ico.owl
imported from: obi.owl
imported from: vo.owl
elucidation: to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])
has associated axiom(fol): (forall (x y t) (if (realizesAt x y t) (and (Process x) (or (Disposition y) (Role y)) (exists (z) (and (MaterialEntity z) (hasParticipantAt x z t) (bearerOfAt z y t)))))) // axiom label in BFO2 CLIF: [059-003]
comment: Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process

participates_in
type: ObjectProperty
inverse of: has participant
domain: Class
  intersection of: continuant
  intersection of: Class
    complement of: spatial region
range: process
BFO OWL specification label: participates-in_st
BFO CLIF specification label: participatesInAt
editor note: [copied from inverse property 'has participant at some time'] Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'has participant at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'has participant@en'(x,y,t)
editor note: [copied from inverse property 'has participant at some time'] BFO 2 Reference: Spatial regions do not participate in processes.
editor note: [copied from inverse property 'has participant at some time'] BFO2 Reference: independent continuant that is not a spatial region, specifically dependent continuant, generically dependent continuant
editor note: [copied from inverse property 'has participant at some time'] BFO2 Reference: process
alternative term: participates_in
imported from: obi.owl
imported from: vo.owl
elucidation: [copied from inverse property 'has participant at some time'] has_participant is an instance-level relation between a process, a continuant, and a temporal region at which the continuant participates in some way in the process. (axiom label in BFO2 Reference: [086-003])
label: participates in
label: participates in at some time

has participant
type: ObjectProperty
domain: process
range: Class
  intersection of: continuant
  intersection of: Class
    complement of: spatial region
property chain axiom: realizes
property chain axiom: inheres in at all times
BFO OWL specification label: has-participant_st
BFO CLIF specification label: hasParticipantAt
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'has participant at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'has participant@en'(x,y,t)
editor note: BFO 2 Reference: Spatial regions do not participate in processes.
editor note: BFO2 Reference: independent continuant that is not a spatial region, specifically dependent continuant, generically dependent continuant
editor note: BFO2 Reference: process
alternative term: has_participant
imported from: obi.owl
imported from: vo.owl
elucidation: has_participant is an instance-level relation between a process, a continuant, and a temporal region at which the continuant participates in some way in the process. (axiom label in BFO2 Reference: [086-003])
has associated axiom(nl): if b has_participant c at t & c is a generically dependent continuant, then there is some independent continuant that is not a spatial region d, and which is such that c g-depends on d at t & b s-depends_on d at t. (axiom label in BFO2 Reference: [091-003])
has associated axiom(nl): if b has_participant c at t & c is a specifically dependent continuant, then there is some independent continuant that is not a spatial region d, c s-depends_on d at t & b s-depends_on d at t. (axiom label in BFO2 Reference: [090-003])
has associated axiom(nl): if b has_participant c at t then b is an occurrent. (axiom label in BFO2 Reference: [087-001])
has associated axiom(nl): if b has_participant c at t then c exists at t. (axiom label in BFO2 Reference: [089-001])
has associated axiom(nl): if b has_participant c at t then c is a continuant. (axiom label in BFO2 Reference: [088-001])
has associated axiom(fol): (forall (x y t) (if (and (hasParticipantAt x y t) (GenericallyDependentContinuant y)) (exists (z) (and (IndependentContinuant z) (not (SpatialRegion z)) (genericallyDependsOn y z t) (specificallyDependsOnAt x z t))))) // axiom label in BFO2 CLIF: [091-003]
has associated axiom(fol): (forall (x y t) (if (and (hasParticipantAt x y t) (SpecificallyDependentContinuant y)) (exists (z) (and (IndependentContinuant z) (not (SpatialRegion z)) (specificallyDependsOnAt x z t) (specificallyDependsOnAt y z t))))) // axiom label in BFO2 CLIF: [090-003]
has associated axiom(fol): (forall (x y t) (if (hasParticipantAt x y t) (Continuant y))) // axiom label in BFO2 CLIF: [088-001]
has associated axiom(fol): (forall (x y t) (if (hasParticipantAt x y t) (Occurrent x))) // axiom label in BFO2 CLIF: [087-001]
has associated axiom(fol): (forall (x y t) (if (hasParticipantAt x y t) (existsAt y t))) // axiom label in BFO2 CLIF: [089-001]
label: has participant at some time

concretized by at some time
type: ObjectProperty
inverse of: concretizes at some time
domain: generically dependent continuant
range: specifically dependent continuant
BFO OWL specification label: concretized-by_st
example of usage: [copied from inverse property 'concretizes at some time'] You may concretize a piece of software by installing it in your computer
example of usage: [copied from inverse property 'concretizes at some time'] You may concretize a recipe that you find in a cookbook by turning it into a plan which exists as a realizable dependent continuant in your head.
example of usage: [copied from inverse property 'concretizes at some time'] you may concretize a poem as a pattern of memory traces in your head
editor note: [copied from inverse property 'concretizes at some time'] Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'concretizes at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'concretizes@en'(x,y,t)
imported from: ogg.owl
imported from: vo.owl
elucidation: [copied from inverse property 'concretizes at some time'] b concretizes c at t means: b is a specifically dependent continuant & c is a generically dependent continuant & for some independent continuant that is not a spatial region d, b s-depends_on d at t & c g-depends on d at t & if c migrates from bearer d to another bearer e than a copy of b will be created in e. (axiom label in BFO2 Reference: [075-002])

concretizes at some time
type: ObjectProperty
domain: specifically dependent continuant
range: generically dependent continuant
BFO OWL specification label: concretizes_st
BFO CLIF specification label: concretizesAt
example of usage: You may concretize a piece of software by installing it in your computer
example of usage: You may concretize a recipe that you find in a cookbook by turning it into a plan which exists as a realizable dependent continuant in your head.
example of usage: you may concretize a poem as a pattern of memory traces in your head
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'concretizes at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'concretizes@en'(x,y,t)
imported from: vo.owl
elucidation: b concretizes c at t means: b is a specifically dependent continuant & c is a generically dependent continuant & for some independent continuant that is not a spatial region d, b s-depends_on d at t & c g-depends on d at t & if c migrates from bearer d to another bearer e than a copy of b will be created in e. (axiom label in BFO2 Reference: [075-002])
has associated axiom(nl): if b g-depends on c at some time t, then there is some d, such that d concretizes b at t and d s-depends_on c at t. (axiom label in BFO2 Reference: [076-001])
has associated axiom(fol): (forall (x y t) (if (concretizesAt x y t) (and (SpecificallyDependentContinuant x) (GenericallyDependentContinuant y) (exists (z) (and (IndependentContinuant z) (specificallyDependsOnAt x z t) (genericallyDependsOnAt y z t)))))) // axiom label in BFO2 CLIF: [075-002]
has associated axiom(fol): (forall (x y t) (if (genericallyDependsOnAt x y t) (exists (z) (and (concretizesAt z x t) (specificallyDependsOnAt z y t))))) // axiom label in BFO2 CLIF: [076-001]

preceded_by
type: ObjectProperty
sub property of: ends after
inverse of: precedes
type: TransitiveProperty
domain: occurrent
range: occurrent
property chain axiom: part of
editor preferred term: preceded by
definition: x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
editor note: An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.
alternative term: is preceded by
alternative term: preceded_by
source: http://www.obofoundry.org/ro/#OBO_REL:preceded_by
in_subset: eco subset
label: preceded by

precedes
type: ObjectProperty
sub property of: temporally related to
type: TransitiveProperty
domain: occurrent
range: occurrent
property chain axiom: part of
editor preferred term: precedes
definition: x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
in_subset: eco subset

occurs in
type: ObjectProperty
inverse of: contains process
domain: occurrent
range: independent continuant
property chain axiom: part of
editor preferred term: occurs in
definition: b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
alternative term: occurs_in
alternative term: unfolds in
alternative term: unfolds_in
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
comment: Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant

contains process
type: ObjectProperty
editor preferred term: site of
definition: [copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t
comment: Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant

specifically depends on at all times
type: ObjectProperty
sub property of: specifically depends on at some time
BFO OWL specification label: s-depends-on_at
BFO CLIF specification label: specificallyDependsOn
example of usage: A pain s-depends_on the organism that is experiencing the pain
example of usage: a gait s-depends_on the walking object. (All at some specific time.)
example of usage: a shape s-depends_on the shaped object
example of usage: one-sided s-dependence of a dependent continuant on an independent continuant: an instance of headache s-depends_on some head
example of usage: one-sided s-dependence of a dependent continuant on an independent continuant: an instance of temperature s-depends_on some organism
example of usage: one-sided s-dependence of a process on something: a process of cell death s-depends_on a cell
example of usage: one-sided s-dependence of a process on something: an instance of seeing (a relational process) s-depends_on some organism and on some seen entity, which may be an occurrent or a continuant
example of usage: one-sided s-dependence of one occurrent on another: a process of answering a question is dependent on a prior process of asking a question
example of usage: one-sided s-dependence of one occurrent on another: a process of obeying a command is dependent on a prior process of issuing a command
example of usage: one-sided s-dependence of one occurrent on multiple independent continuants: a relational process of hitting a ball with a cricket bat
example of usage: one-sided s-dependence of one occurrent on multiple independent continuants: a relational process of paying cash to a merchant in exchange for a bag of figs
example of usage: reciprocal s-dependence between occurrents: a process of buying and the associated process of selling
example of usage: reciprocal s-dependence between occurrents: a process of increasing the volume of a portion of gas while temperature remains constant and the associated process of decreasing the pressure exerted by the gas
example of usage: reciprocal s-dependence between occurrents: in a game of chess the process of playing with the white pieces is mutually dependent on the process of playing with the black pieces
example of usage: the one-sided dependence of an occurrent on an independent continuant: football match on the players, the ground, the ball
example of usage: the one-sided dependence of an occurrent on an independent continuant: handwave on a hand
example of usage: the three-sided reciprocal s-dependence of the hue, saturation and brightness of a color [45
example of usage: the three-sided reciprocal s-dependence of the pitch, timbre and volume of a tone [45
example of usage: the two-sided reciprocal s-dependence of the roles of husband and wife [20
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'specifically depends on at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'specifically depends on@en(x,y,t)'.
editor note: BFO 2 Reference: An entity – for example an act of communication or a game of football – can s-depends_on more than one entity. Complex phenomena for example in the psychological and social realms (such as inferring, commanding and requesting) or in the realm of multi-organismal biological processes (such as infection and resistance), will involve multiple families of dependence relations, involving both continuants and occurrents [1, 4, 28
editor note: BFO 2 Reference: S-dependence is just one type of dependence among many; it is what, in the literature, is referred to as ‘existential dependence’ [87, 46, 65, 20
editor note: BFO 2 Reference: the relation of s-depends_on does not in every case require simultaneous existence of its relata. Note the difference between such cases and the cases of continuant universals defined historically: the act of answering depends existentially on the prior act of questioning; the human being who was baptized or who answered a question does not himself depend existentially on the prior act of baptism or answering. He would still exist even if these acts had never taken place.
editor note: BFO2 Reference: specifically dependent continuant\; process; process boundary
imported from: ogg.owl
imported from: vo.owl
elucidation: To say that b s-depends_on a at t is to say that b and c do not share common parts & b is of its nature such that it cannot exist unless c exists & b is not a boundary of c and b is not a site of which c is the host [64
has associated axiom(nl): If b is s-depends_on something at some time, then b is not a material entity. (axiom label in BFO2 Reference: [052-001])
has associated axiom(nl): If b s-depends_on something at t, then there is some c, which is an independent continuant and not a spatial region, such that b s-depends_on c at t. (axiom label in BFO2 Reference: [136-001])
has associated axiom(nl): If occurrent b s-depends_on some independent continuant c at t, then b s-depends_on c at every time at which b exists. (axiom label in BFO2 Reference: [015-002])
has associated axiom(nl): an entity does not s-depend_on any of its (continuant or occurrent) parts or on anything it is part of. (axiom label in BFO2 Reference: [013-002])
has associated axiom(nl): if b s-depends_on c at t & c s-depends_on d at t then b s-depends_on d at t. (axiom label in BFO2 Reference: [054-002])
has associated axiom(fol): (forall (x y t) (if (and (Entity x) (or (continuantPartOfAt y x t) (continuantPartOfAt x y t) (occurrentPartOf x y) (occurrentPartOf y x))) (not (specificallyDependsOnAt x y t)))) // axiom label in BFO2 CLIF: [013-002]
has associated axiom(fol): (forall (x y t) (if (and (Occurrent x) (IndependentContinuant y) (specificallyDependsOnAt x y t)) (forall (t_1) (if (existsAt x t_1) (specificallyDependsOnAt x y t_1))))) // axiom label in BFO2 CLIF: [015-002]
has associated axiom(fol): (forall (x y t) (if (specificallyDependsOnAt x y t) (exists (z) (and (IndependentContinuant z) (not (SpatialRegion z)) (specificallyDependsOnAt x z t))))) // axiom label in BFO2 CLIF: [136-001]
has associated axiom(fol): (forall (x y z t) (if (and (specificallyDependsOnAt x y t) (specificallyDependsOnAt y z t)) (specificallyDependsOnAt x z t))) // axiom label in BFO2 CLIF: [054-002]
has associated axiom(fol): (forall (x) (if (exists (y t) (specificallyDependsOnAt x y t)) (not (MaterialEntity x)))) // axiom label in BFO2 CLIF: [052-001]

located in at all times
type: ObjectProperty
sub property of: located in at some time
type: TransitiveProperty
BFO OWL specification label: located-in_at
BFO CLIF specification label: locatedInAt
example of usage: Mary located_in Salzburg
example of usage: the Empire State Building located_in New York.
example of usage: this portion of cocaine located_in this portion of blood
example of usage: this stem cell located_in this portion of bone marrow
example of usage: your arm located_in your body
definition: b located_in c at t = Def. b and c are independent continuants, and the region at which b is located at t is a (proper or improper) continuant_part_of the region at which c is located at t. (axiom label in BFO2 Reference: [045-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'located in at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'located in@en(x,y,t)'.
editor note: BFO2 Reference: independent continuant
imported from: vo.owl
has associated axiom(nl): Located_in is transitive. (axiom label in BFO2 Reference: [046-001])
has associated axiom(nl): for all independent continuants b, c, and d: if b continuant_part_of c at t & c located_in d at t, then b located_in d at t. (axiom label in BFO2 Reference: [048-001])
has associated axiom(nl): for all independent continuants b, c, and d: if b located_in c at t & c continuant_part_of d at t, then b located_in d at t. (axiom label in BFO2 Reference: [049-001])
has associated axiom(fol): (forall (x y z t) (if (and (IndependentContinuant x) (IndependentContinuant y) (IndependentContinuant z) (continuantPartOfAt x y t) (locatedInAt y z t)) (locatedInAt x z t))) // axiom label in BFO2 CLIF: [048-001]
has associated axiom(fol): (forall (x y z t) (if (and (IndependentContinuant x) (IndependentContinuant y) (IndependentContinuant z) (locatedInAt x y t) (continuantPartOfAt y z t)) (locatedInAt x z t))) // axiom label in BFO2 CLIF: [049-001]
has associated axiom(fol): (forall (x y z t) (if (and (locatedInAt x y t) (locatedInAt y z t)) (locatedInAt x z t))) // axiom label in BFO2 CLIF: [046-001]
has associated axiom(fol): (iff (locatedInAt a b t) (and (IndependentContinuant a) (IndependentContinuant b) (exists (r_1 r_2) (and (occupiesSpatialRegionAt a r_1 t) (occupiesSpatialRegionAt b r_2 t) (continuantPartOfAt r_1 r_2 t))))) // axiom label in BFO2 CLIF: [045-001]

occupies spatial region at some time
type: ObjectProperty
inverse of: has spatial occupant at some time
domain: independent continuant
range: spatial region
BFO OWL specification label: located-at-r_st
BFO CLIF specification label: occupiesSpatialRegionAt
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'occupies spatial region at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'occupies spatial region@en'(x,y,t)
editor note: BFO2 Reference: independent continuant
editor note: BFO2 Reference: spatial region
imported from: ogg.owl
imported from: vo.owl
elucidation: b occupies_spatial_region r at t means that r is a spatial region in which independent continuant b is exactly located (axiom label in BFO2 Reference: [041-002])
has associated axiom(nl): every region r is occupies_spatial_region r at all times. (axiom label in BFO2 Reference: [042-002])
has associated axiom(nl): if b occupies_spatial_region r at t & b continuant_part_of b at t, then there is some r which is continuant_part_of r at t such that b occupies_spatial_region r at t. (axiom label in BFO2 Reference: [043-001])
has associated axiom(fol): (forall (r t) (if (Region r) (occupiesSpatialRegionAt r r t))) // axiom label in BFO2 CLIF: [042-002]
has associated axiom(fol): (forall (x r t) (if (occupiesSpatialRegionAt x r t) (and (SpatialRegion r) (IndependentContinuant x)))) // axiom label in BFO2 CLIF: [041-002]
has associated axiom(fol): (forall (x y r_1 t) (if (and (occupiesSpatialRegionAt x r_1 t) (continuantPartOfAt y x t)) (exists (r_2) (and (continuantPartOfAt r_2 r_1 t) (occupiesSpatialRegionAt y r_2 t))))) // axiom label in BFO2 CLIF: [043-001]

has function at some time
type: ObjectProperty
sub property of: bearer of at some time
BFO OWL specification label: has-f_st
BFO CLIF specification label: hasFunctionAt
definition: a has_function b at t =Def. b function_of a at t. (axiom label in BFO2 Reference: [070-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'has function at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'has function@en'(x,y,t)
imported from: vo.owl
has associated axiom(fol): (iff (hasFunctionAt a b t) (functionOf b a t)) // axiom label in BFO2 CLIF: [070-001]

has quality at some time
type: ObjectProperty
sub property of: bearer of at some time
range: quality
BFO OWL specification label: has-q_st
imported from: vo.owl

has role at some time
type: ObjectProperty
sub property of: bearer of at some time
range: role
BFO OWL specification label: has-r_st
BFO CLIF specification label: hasRoleAt
definition: a has_role b at t =Def. b role_of a at t. (axiom label in BFO2 Reference: [068-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'has role at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'has role@en'(x,y,t)
imported from: obi.owl
imported from: vo.owl
has associated axiom(fol): (iff (hasRoleAt a b t) (roleOfAt b a t)) // axiom label in BFO2 CLIF: [068-001]

exists at
type: ObjectProperty
inverse of: during which exists
domain: entity
range: temporal region
BFO OWL specification label: exists-at
BFO CLIF specification label: existsAt
editor note: BFO2 Reference: entity
editor note: BFO2 Reference: temporal region
imported from: ogg.owl
imported from: vo.owl
elucidation: b exists_at t means: b is an entity which exists at some temporal region t. (axiom label in BFO2 Reference: [118-002])

has continuant part at all times
type: ObjectProperty
sub property of: has continuant part at some time
inverse of: part of continuant at all times that whole exists
type: TransitiveProperty
BFO OWL specification label: c-has-part_at
BFO CLIF specification label: hasContinuantPartAt
definition: [copied from inverse property 'part of continuant at all times that whole exists'] forall(t) exists_at(y,t) -> exists_at(x,t) and 'part of continuant'(x,y,t)
definition: b has_continuant_part c at t = Def. c continuant_part_of b at t. (axiom label in BFO2 Reference: [006-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'has continuant part at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'has continuant part@en(x,y,t)'.
editor note: [copied from inverse property 'part of continuant at all times that whole exists'] This is a binary version of a ternary time-indexed, instance level, relation. Unlike the rest of the temporalized relations which temporally quantify over existence of the subject of the relation, this relation temporally quantifies over the existence of the object of the relation. The relation is provided tentatively, to assess whether the GO needs such a relation. It is inverse of 'has continuant part at all times'
imported from: ogg.owl
imported from: vo.owl
has associated axiom(fol): (iff (hasContinuantPartAt a b t) (continuantPartOfAt b a t)) // axiom label in BFO2 CLIF: [006-001]

has occurrent part
type: ObjectProperty
inverse of: part of occurrent
type: TransitiveProperty
domain: occurrent
range: occurrent
BFO OWL specification label: o-has-part
BFO CLIF specification label: hasOccurrentPart
example of usage: [copied from inverse property 'part of occurrent'] Mary’s 5th birthday occurrent_part_of Mary’s life
example of usage: [copied from inverse property 'part of occurrent'] The process of a footballer’s heart beating once is an occurrent part but not a temporal_part of a game of football.
example of usage: [copied from inverse property 'part of occurrent'] the first set of the tennis match occurrent_part_of the tennis match.
definition: b has_occurrent_part c = Def. c occurrent_part_of b. (axiom label in BFO2 Reference: [007-001])
editor note: [copied from inverse property 'part of occurrent'] BFO 2 Reference: a (continuant or occurrent) part of itself. We appreciate that this is counterintuitive for some users, since it implies for example that President Obama is a part of himself. However it brings benefits in simplifying the logical formalism, and it captures an important feature of identity, namely that it is the limit case of mereological inclusion.
editor note: [copied from inverse property 'part of occurrent'] BFO2 Reference: occurrent
imported from: ogg.owl
imported from: vo.owl
elucidation: [copied from inverse property 'part of occurrent'] b occurrent_part_of c =Def. b is a part of c & b and c are occurrents. (axiom label in BFO2 Reference: [003-002])
has associated axiom(fol): (iff (hasOccurrentPart a b) (occurrentPartOf b a)) // axiom label in BFO2 CLIF: [007-001]

has proper occurrent part
type: ObjectProperty
sub property of: has occurrent part
type: TransitiveProperty
domain: occurrent
range: occurrent
BFO OWL specification label: o-has-ppart
BFO CLIF specification label: hasProperOccurrentPart
definition: [copied from inverse property 'proper part of occurrent'] b proper_occurrent_part_of c =Def. b occurrent_part_of c & b and c are not identical. (axiom label in BFO2 Reference: [005-001])
definition: b has_proper_occurrent_part c = Def. c proper_occurrent_part_of b. [XXX-001
imported from: ogg.owl
imported from: vo.owl

has temporal part
type: ObjectProperty
sub property of: has occurrent part
inverse of: temporal part of
type: TransitiveProperty
domain: occurrent
range: occurrent
BFO OWL specification label: has-t-part
example of usage: [copied from inverse property 'temporal part of'] the 4th year of your life is a temporal part of your life\. The first quarter of a game of football is a temporal part of the whole game\. The process of your heart beating from 4pm to 5pm today is a temporal part of the entire process of your heart beating.\ The 4th year of your life is a temporal part of your life
example of usage: [copied from inverse property 'temporal part of'] the process boundary which separates the 3rd and 4th years of your life.
example of usage: [copied from inverse property 'temporal part of'] your heart beating from 4pm to 5pm today is a temporal part of the process of your heart beating
definition: [copied from inverse property 'temporal part of'] b proper_temporal_part_of c =Def. b temporal_part_of c & not (b = c). (axiom label in BFO2 Reference: [116-001])
definition: [copied from inverse property 'temporal part of'] b temporal_part_of c =Def.b occurrent_part_of c & & for some temporal region t, b occupies_temporal_region t & for all occurrents d, t (if d occupies_temporal_region t & t? occurrent_part_of t then (d occurrent_part_of a iff d occurrent_part_of b)). (axiom label in BFO2 Reference: [078-003])
imported from: ogg.owl
imported from: vo.owl

has spatial occupant at some time
type: ObjectProperty
domain: spatial region
range: independent continuant
BFO OWL specification label: r-location-of_st
editor note: [copied from inverse property 'occupies spatial region at some time'] Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'occupies spatial region at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'occupies spatial region@en'(x,y,t)
editor note: [copied from inverse property 'occupies spatial region at some time'] BFO2 Reference: independent continuant
editor note: [copied from inverse property 'occupies spatial region at some time'] BFO2 Reference: spatial region
imported from: ogg.owl
imported from: vo.owl
elucidation: [copied from inverse property 'occupies spatial region at some time'] b occupies_spatial_region r at t means that r is a spatial region in which independent continuant b is exactly located (axiom label in BFO2 Reference: [041-002])

has location at some time
type: ObjectProperty
inverse of: located in at some time
domain: independent continuant
range: independent continuant
BFO OWL specification label: has-location_st
example of usage: [copied from inverse property 'located in at some time'] Mary located_in Salzburg
example of usage: [copied from inverse property 'located in at some time'] the Empire State Building located_in New York.
example of usage: [copied from inverse property 'located in at some time'] this portion of cocaine located_in this portion of blood
example of usage: [copied from inverse property 'located in at some time'] this stem cell located_in this portion of bone marrow
example of usage: [copied from inverse property 'located in at some time'] your arm located_in your body
definition: [copied from inverse property 'located in at some time'] b located_in c at t = Def. b and c are independent continuants, and the region at which b is located at t is a (proper or improper) continuant_part_of the region at which c is located at t. (axiom label in BFO2 Reference: [045-001])
editor note: [copied from inverse property 'located in at some time'] Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'located in at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'located in@en'(x,y,t)
editor note: [copied from inverse property 'located in at some time'] BFO2 Reference: independent continuant
imported from: vo.owl

has specific dependent at some time
type: ObjectProperty
inverse of: specifically depends on at some time
domain: Class
  union of: process
  union of: specifically dependent continuant
  union of: Class
    intersection of: independent continuant
    intersection of: Class
      complement of: spatial region
range: Class
  union of: process
  union of: specifically dependent continuant
BFO OWL specification label: has-s-dep_st
example of usage: [copied from inverse property 'specifically depends on at some time'] A pain s-depends_on the organism that is experiencing the pain
example of usage: [copied from inverse property 'specifically depends on at some time'] a gait s-depends_on the walking object. (All at some specific time.)
example of usage: [copied from inverse property 'specifically depends on at some time'] a shape s-depends_on the shaped object
example of usage: [copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of a dependent continuant on an independent continuant: an instance of headache s-depends_on some head
example of usage: [copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of a dependent continuant on an independent continuant: an instance of temperature s-depends_on some organism
example of usage: [copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of a process on something: a process of cell death s-depends_on a cell
example of usage: [copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of a process on something: an instance of seeing (a relational process) s-depends_on some organism and on some seen entity, which may be an occurrent or a continuant
example of usage: [copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of one occurrent on another: a process of answering a question is dependent on a prior process of asking a question
example of usage: [copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of one occurrent on another: a process of obeying a command is dependent on a prior process of issuing a command
example of usage: [copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of one occurrent on multiple independent continuants: a relational process of hitting a ball with a cricket bat
example of usage: [copied from inverse property 'specifically depends on at some time'] one-sided s-dependence of one occurrent on multiple independent continuants: a relational process of paying cash to a merchant in exchange for a bag of figs
example of usage: [copied from inverse property 'specifically depends on at some time'] reciprocal s-dependence between occurrents: a process of buying and the associated process of selling
example of usage: [copied from inverse property 'specifically depends on at some time'] reciprocal s-dependence between occurrents: a process of increasing the volume of a portion of gas while temperature remains constant and the associated process of decreasing the pressure exerted by the gas
example of usage: [copied from inverse property 'specifically depends on at some time'] reciprocal s-dependence between occurrents: in a game of chess the process of playing with the white pieces is mutually dependent on the process of playing with the black pieces
example of usage: [copied from inverse property 'specifically depends on at some time'] the one-sided dependence of an occurrent on an independent continuant: football match on the players, the ground, the ball
example of usage: [copied from inverse property 'specifically depends on at some time'] the one-sided dependence of an occurrent on an independent continuant: handwave on a hand
example of usage: [copied from inverse property 'specifically depends on at some time'] the three-sided reciprocal s-dependence of the hue, saturation and brightness of a color [45
example of usage: [copied from inverse property 'specifically depends on at some time'] the three-sided reciprocal s-dependence of the pitch, timbre and volume of a tone [45
example of usage: [copied from inverse property 'specifically depends on at some time'] the two-sided reciprocal s-dependence of the roles of husband and wife [20
editor note: [copied from inverse property 'specifically depends on at some time'] Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'specifically depends on at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'specifically depends on@en'(x,y,t)
editor note: [copied from inverse property 'specifically depends on at some time'] BFO 2 Reference: An entity – for example an act of communication or a game of football – can s-depends_on more than one entity. Complex phenomena for example in the psychological and social realms (such as inferring, commanding and requesting) or in the realm of multi-organismal biological processes (such as infection and resistance), will involve multiple families of dependence relations, involving both continuants and occurrents [1, 4, 28
editor note: [copied from inverse property 'specifically depends on at some time'] BFO 2 Reference: S-dependence is just one type of dependence among many; it is what, in the literature, is referred to as ‘existential dependence’ [87, 46, 65, 20
editor note: [copied from inverse property 'specifically depends on at some time'] BFO 2 Reference: the relation of s-depends_on does not in every case require simultaneous existence of its relata. Note the difference between such cases and the cases of continuant universals defined historically: the act of answering depends existentially on the prior act of questioning; the human being who was baptized or who answered a question does not himself depend existentially on the prior act of baptism or answering. He would still exist even if these acts had never taken place.
editor note: [copied from inverse property 'specifically depends on at some time'] BFO2 Reference: specifically dependent continuant\; process; process boundary
imported from: ogg.owl
imported from: vo.owl
elucidation: [copied from inverse property 'specifically depends on at some time'] To say that b s-depends_on a at t is to say that b and c do not share common parts & b is of its nature such that it cannot exist unless c exists & b is not a boundary of c and b is not a site of which c is the host [64

has spatiotemporal occupant
type: ObjectProperty
inverse of: occupies spatiotemporal region
domain: spatiotemporal region
range: occurrent
BFO OWL specification label: occupied-by
editor note: [copied from inverse property 'occupies spatiotemporal region'] BFO 2 Reference: The occupies_spatiotemporal_region and occupies_temporal_region relations are the counterpart, on the occurrent side, of the relation occupies_spatial_region.
imported from: ogg.owl
imported from: vo.owl
elucidation: [copied from inverse property 'occupies spatiotemporal region'] p occupies_spatiotemporal_region s. This is a primitive relation between an occurrent p and the spatiotemporal region s which is its spatiotemporal extent. (axiom label in BFO2 Reference: [082-003])

occupies spatiotemporal region
type: ObjectProperty
domain: occurrent
range: spatiotemporal region
BFO OWL specification label: occupies
BFO CLIF specification label: occupiesSpatiotemporalRegion
editor note: BFO 2 Reference: The occupies_spatiotemporal_region and occupies_temporal_region relations are the counterpart, on the occurrent side, of the relation occupies_spatial_region.
imported from: ogg.owl
imported from: vo.owl
elucidation: p occupies_spatiotemporal_region s. This is a primitive relation between an occurrent p and the spatiotemporal region s which is its spatiotemporal extent. (axiom label in BFO2 Reference: [082-003])

part of occurrent
type: ObjectProperty
type: TransitiveProperty
domain: occurrent
range: occurrent
BFO OWL specification label: o-part-of
BFO CLIF specification label: occurrentPartOf
example of usage: Mary’s 5th birthday occurrent_part_of Mary’s life
example of usage: The process of a footballer’s heart beating once is an occurrent part but not a temporal_part of a game of football.
example of usage: the first set of the tennis match occurrent_part_of the tennis match.
definition: [copied from inverse property 'has occurrent part'] b has_occurrent_part c = Def. c occurrent_part_of b. (axiom label in BFO2 Reference: [007-001])
editor note: BFO 2 Reference: a (continuant or occurrent) part of itself. We appreciate that this is counterintuitive for some users, since it implies for example that President Obama is a part of himself. However it brings benefits in simplifying the logical formalism, and it captures an important feature of identity, namely that it is the limit case of mereological inclusion.
editor note: BFO2 Reference: occurrent
imported from: ogg.owl
imported from: vo.owl
elucidation: b occurrent_part_of c =Def. b is a part of c & b and c are occurrents. (axiom label in BFO2 Reference: [003-002])
has associated axiom(nl): occurrent_part_of is antisymmetric. (axiom label in BFO2 Reference: [123-001])
has associated axiom(nl): occurrent_part_of is reflexive (every occurrent entity is an occurrent_part_of itself). (axiom label in BFO2 Reference: [113-002])
has associated axiom(nl): occurrent_part_of is transitive. (axiom label in BFO2 Reference: [112-001])
has associated axiom(nl): occurrent_part_of satisfies unique product. (axiom label in BFO2 Reference: [125-001])
has associated axiom(nl): occurrent_part_of satisfies weak supplementation. (axiom label in BFO2 Reference: [124-001])
has associated axiom(fol): (forall (x y t) (if (and (occurrentPartOf x y t) (not (= x y))) (exists (z) (and (occurrentPartOf z y t) (not (exists (w) (and (occurrentPartOf w x t) (occurrentPartOf w z t)))))))) // axiom label in BFO2 CLIF: [124-001]
has associated axiom(fol): (forall (x y t) (if (and (occurrentPartOf x y t) (occurrentPartOf y x t)) (= x y))) // axiom label in BFO2 CLIF: [123-001]
has associated axiom(fol): (forall (x y t) (if (exists (v) (and (occurrentPartOf v x t) (occurrentPartOf v y t))) (exists (z) (forall (u w) (iff (iff (occurrentPartOf w u t) (and (occurrentPartOf w x t) (occurrentPartOf w y t))) (= z u)))))) // axiom label in BFO2 CLIF: [125-001]
has associated axiom(fol): (forall (x y z) (if (and (occurrentPartOf x y) (occurrentPartOf y z)) (occurrentPartOf x z))) // axiom label in BFO2 CLIF: [112-001]
has associated axiom(fol): (forall (x) (if (Occurrent x) (occurrentPartOf x x))) // axiom label in BFO2 CLIF: [113-002]

temporal part of
type: ObjectProperty
sub property of: part of occurrent
type: TransitiveProperty
domain: occurrent
range: occurrent
BFO OWL specification label: t-part-of
BFO CLIF specification label: temporalPartOf
example of usage: the 4th year of your life is a temporal part of your life\. The first quarter of a game of football is a temporal part of the whole game\. The process of your heart beating from 4pm to 5pm today is a temporal part of the entire process of your heart beating.\ The 4th year of your life is a temporal part of your life
example of usage: the process boundary which separates the 3rd and 4th years of your life.
example of usage: your heart beating from 4pm to 5pm today is a temporal part of the process of your heart beating
definition: b proper_temporal_part_of c =Def. b temporal_part_of c & not (b = c). (axiom label in BFO2 Reference: [116-001])
definition: b temporal_part_of c =Def.b occurrent_part_of c & & for some temporal region t, b occupies_temporal_region t & for all occurrents d, t (if d occupies_temporal_region t & t? occurrent_part_of t then (d occurrent_part_of a iff d occurrent_part_of b)). (axiom label in BFO2 Reference: [078-003])
imported from: ogg.owl
imported from: vo.owl
has associated axiom(nl): if b proper_temporal_part_of c, then there is some d which is a proper_temporal_part_of c and which shares no parts with b. (axiom label in BFO2 Reference: [117-002])
has associated axiom(fol): (forall (x y) (if (properTemporalPartOf x y) (exists (z) (and (properTemporalPartOf z y) (not (exists (w) (and (temporalPartOf w x) (temporalPartOf w z)))))))) // axiom label in BFO2 CLIF: [117-002]
has associated axiom(fol): (iff (properTemporalPartOf a b) (and (temporalPartOf a b) (not (= a b)))) // axiom label in BFO2 CLIF: [116-001]
has associated axiom(fol): (iff (temporalPartOf a b) (and (occurrentPartOf a b) (exists (t) (and (TemporalRegion t) (occupiesSpatioTemporalRegion a t))) (forall (c t_1) (if (and (Occurrent c) (occupiesSpatioTemporalRegion c t_1) (occurrentPartOf t_1 r)) (iff (occurrentPartOf c a) (occurrentPartOf c b)))))) // axiom label in BFO2 CLIF: [078-003]

projects onto spatial region at some time
type: ObjectProperty
inverse of: spatial projection of spatiotemporal at some time
domain: spatiotemporal region
range: spatial region
BFO OWL specification label: st-projects-onto-s_st
imported from: ogg.owl
imported from: vo.owl

spatial projection of spatiotemporal at some time
type: ObjectProperty
domain: spatial region
range: spatiotemporal region
BFO OWL specification label: s-projection-of-st_st
imported from: ogg.owl
imported from: vo.owl

projects onto temporal region
type: ObjectProperty
sub property of: exists at
inverse of: temporal projection of spatiotemporal
domain: spatiotemporal region
range: temporal region
BFO OWL specification label: st-projects-onto-t
imported from: ogg.owl
imported from: vo.owl

temporal projection of spatiotemporal
type: ObjectProperty
sub property of: during which exists
domain: temporal region
range: spatiotemporal region
BFO OWL specification label: t-projection-of-st
imported from: ogg.owl
imported from: vo.owl

occupies temporal region
type: ObjectProperty
sub property of: exists at
inverse of: has temporal occupant
domain: occurrent
range: temporal region
BFO OWL specification label: spans
BFO CLIF specification label: occupiesTemporalRegion
imported from: ogg.owl
imported from: vo.owl
elucidation: p occupies_temporal_region t. This is a primitive relation between an occurrent p and the temporal region t upon which the spatiotemporal region p occupies_spatiotemporal_region projects. (axiom label in BFO2 Reference: [132-001])

has temporal occupant
type: ObjectProperty
sub property of: during which exists
domain: temporal region
range: occurrent
BFO OWL specification label: span-of
BFO CLIF specification label: spanOf
imported from: ogg.owl
imported from: vo.owl
elucidation: [copied from inverse property 'occupies temporal region'] p occupies_temporal_region t. This is a primitive relation between an occurrent p and the temporal region t upon which the spatiotemporal region p occupies_spatiotemporal_region projects. (axiom label in BFO2 Reference: [132-001])

during which exists
type: ObjectProperty
domain: temporal region
range: entity
BFO OWL specification label: during-which-exists
editor note: [copied from inverse property 'exists at'] BFO2 Reference: entity
editor note: [copied from inverse property 'exists at'] BFO2 Reference: temporal region
imported from: ogg.owl
imported from: vo.owl
elucidation: [copied from inverse property 'exists at'] b exists_at t means: b is an entity which exists at some temporal region t. (axiom label in BFO2 Reference: [118-002])

bearer of at all times
type: ObjectProperty
sub property of: has specific dependent at all times
domain: Class
  intersection of: independent continuant
  intersection of: Class
    complement of: spatial region
range: specifically dependent continuant
BFO OWL specification label: bearer-of_at
BFO CLIF specification label: bearerOfAt
definition: b bearer_of c at t =Def. c s-depends_on b at t & b is an independent continuant that is not a spatial region. (axiom label in BFO2 Reference: [053-004])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'bearer of at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'bearer of@en(x,y,t)'.
editor note: BFO2 Reference: independent continuant that is not a spatial region
editor note: BFO2 Reference: specifically dependent continuant
imported from: ogg.owl
imported from: vo.owl
has associated axiom(fol): (iff (bearerOfAt a b t) (and (specificallyDependsOnAt b a t) (IndependentContinuant a) (not (SpatialRegion a)) (existsAt b t))) // axiom label in BFO2 CLIF: [053-004]

has quality at all times
type: ObjectProperty
sub property of: bearer of at all times
range: quality
BFO OWL specification label: has-q_at
imported from: vo.owl

has role at all times
type: ObjectProperty
sub property of: bearer of at all times
range: role
BFO OWL specification label: has-r_at
BFO CLIF specification label: hasRoleAt
definition: a has_role b at t =Def. b role_of a at t. (axiom label in BFO2 Reference: [068-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'has role at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'has role@en(x,y,t)'.
imported from: vo.owl
has associated axiom(fol): (iff (hasRoleAt a b t) (roleOfAt b a t)) // axiom label in BFO2 CLIF: [068-001]

has participant at all times
type: ObjectProperty
sub property of: has participant
domain: process
range: Class
  intersection of: continuant
  intersection of: Class
    complement of: spatial region
BFO OWL specification label: has-participant_at
BFO CLIF specification label: hasParticipantAt
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'has participant at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'has participant@en(x,y,t)'.
editor note: BFO 2 Reference: Spatial regions do not participate in processes.
editor note: BFO2 Reference: independent continuant that is not a spatial region, specifically dependent continuant, generically dependent continuant
editor note: BFO2 Reference: process
imported from: vo.owl
elucidation: has_participant is an instance-level relation between a process, a continuant, and a temporal region at which the continuant participates in some way in the process. (axiom label in BFO2 Reference: [086-003])
has associated axiom(nl): if b has_participant c at t & c is a generically dependent continuant, then there is some independent continuant that is not a spatial region d, and which is such that c g-depends on d at t & b s-depends_on d at t. (axiom label in BFO2 Reference: [091-003])
has associated axiom(nl): if b has_participant c at t & c is a specifically dependent continuant, then there is some independent continuant that is not a spatial region d, c s-depends_on d at t & b s-depends_on d at t. (axiom label in BFO2 Reference: [090-003])
has associated axiom(nl): if b has_participant c at t then b is an occurrent. (axiom label in BFO2 Reference: [087-001])
has associated axiom(nl): if b has_participant c at t then c exists at t. (axiom label in BFO2 Reference: [089-001])
has associated axiom(nl): if b has_participant c at t then c is a continuant. (axiom label in BFO2 Reference: [088-001])
has associated axiom(fol): (forall (x y t) (if (and (hasParticipantAt x y t) (GenericallyDependentContinuant y)) (exists (z) (and (IndependentContinuant z) (not (SpatialRegion z)) (genericallyDependsOn y z t) (specificallyDependsOnAt x z t))))) // axiom label in BFO2 CLIF: [091-003]
has associated axiom(fol): (forall (x y t) (if (and (hasParticipantAt x y t) (SpecificallyDependentContinuant y)) (exists (z) (and (IndependentContinuant z) (not (SpatialRegion z)) (specificallyDependsOnAt x z t) (specificallyDependsOnAt y z t))))) // axiom label in BFO2 CLIF: [090-003]
has associated axiom(fol): (forall (x y t) (if (hasParticipantAt x y t) (Continuant y))) // axiom label in BFO2 CLIF: [088-001]
has associated axiom(fol): (forall (x y t) (if (hasParticipantAt x y t) (Occurrent x))) // axiom label in BFO2 CLIF: [087-001]
has associated axiom(fol): (forall (x y t) (if (hasParticipantAt x y t) (existsAt y t))) // axiom label in BFO2 CLIF: [089-001]

has specific dependent at all times
type: ObjectProperty
sub property of: has specific dependent at some time
BFO OWL specification label: has-s-dep_at
imported from: ogg.owl
imported from: vo.owl

specifically depends on at some time
type: ObjectProperty
domain: Class
  union of: process
  union of: specifically dependent continuant
range: Class
  union of: process
  union of: specifically dependent continuant
  union of: Class
    intersection of: independent continuant
    intersection of: Class
      complement of: spatial region
BFO OWL specification label: s-depends-on_st
BFO CLIF specification label: specificallyDependsOn
example of usage: A pain s-depends_on the organism that is experiencing the pain
example of usage: a gait s-depends_on the walking object. (All at some specific time.)
example of usage: a shape s-depends_on the shaped object
example of usage: one-sided s-dependence of a dependent continuant on an independent continuant: an instance of headache s-depends_on some head
example of usage: one-sided s-dependence of a dependent continuant on an independent continuant: an instance of temperature s-depends_on some organism
example of usage: one-sided s-dependence of a process on something: a process of cell death s-depends_on a cell
example of usage: one-sided s-dependence of a process on something: an instance of seeing (a relational process) s-depends_on some organism and on some seen entity, which may be an occurrent or a continuant
example of usage: one-sided s-dependence of one occurrent on another: a process of answering a question is dependent on a prior process of asking a question
example of usage: one-sided s-dependence of one occurrent on another: a process of obeying a command is dependent on a prior process of issuing a command
example of usage: one-sided s-dependence of one occurrent on multiple independent continuants: a relational process of hitting a ball with a cricket bat
example of usage: one-sided s-dependence of one occurrent on multiple independent continuants: a relational process of paying cash to a merchant in exchange for a bag of figs
example of usage: reciprocal s-dependence between occurrents: a process of buying and the associated process of selling
example of usage: reciprocal s-dependence between occurrents: a process of increasing the volume of a portion of gas while temperature remains constant and the associated process of decreasing the pressure exerted by the gas
example of usage: reciprocal s-dependence between occurrents: in a game of chess the process of playing with the white pieces is mutually dependent on the process of playing with the black pieces
example of usage: the one-sided dependence of an occurrent on an independent continuant: football match on the players, the ground, the ball
example of usage: the one-sided dependence of an occurrent on an independent continuant: handwave on a hand
example of usage: the three-sided reciprocal s-dependence of the hue, saturation and brightness of a color [45
example of usage: the three-sided reciprocal s-dependence of the pitch, timbre and volume of a tone [45
example of usage: the two-sided reciprocal s-dependence of the roles of husband and wife [20
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'specifically depends on at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'specifically depends on@en'(x,y,t)
editor note: BFO 2 Reference: An entity – for example an act of communication or a game of football – can s-depends_on more than one entity. Complex phenomena for example in the psychological and social realms (such as inferring, commanding and requesting) or in the realm of multi-organismal biological processes (such as infection and resistance), will involve multiple families of dependence relations, involving both continuants and occurrents [1, 4, 28
editor note: BFO 2 Reference: S-dependence is just one type of dependence among many; it is what, in the literature, is referred to as ‘existential dependence’ [87, 46, 65, 20
editor note: BFO 2 Reference: the relation of s-depends_on does not in every case require simultaneous existence of its relata. Note the difference between such cases and the cases of continuant universals defined historically: the act of answering depends existentially on the prior act of questioning; the human being who was baptized or who answered a question does not himself depend existentially on the prior act of baptism or answering. He would still exist even if these acts had never taken place.
editor note: BFO2 Reference: specifically dependent continuant\; process; process boundary
imported from: ogg.owl
imported from: vo.owl
elucidation: To say that b s-depends_on a at t is to say that b and c do not share common parts & b is of its nature such that it cannot exist unless c exists & b is not a boundary of c and b is not a site of which c is the host [64
has associated axiom(nl): If b is s-depends_on something at some time, then b is not a material entity. (axiom label in BFO2 Reference: [052-001])
has associated axiom(nl): If b s-depends_on something at t, then there is some c, which is an independent continuant and not a spatial region, such that b s-depends_on c at t. (axiom label in BFO2 Reference: [136-001])
has associated axiom(nl): If occurrent b s-depends_on some independent continuant c at t, then b s-depends_on c at every time at which b exists. (axiom label in BFO2 Reference: [015-002])
has associated axiom(nl): an entity does not s-depend_on any of its (continuant or occurrent) parts or on anything it is part of. (axiom label in BFO2 Reference: [013-002])
has associated axiom(nl): if b s-depends_on c at t & c s-depends_on d at t then b s-depends_on d at t. (axiom label in BFO2 Reference: [054-002])
has associated axiom(fol): (forall (x y t) (if (and (Entity x) (or (continuantPartOfAt y x t) (continuantPartOfAt x y t) (occurrentPartOf x y) (occurrentPartOf y x))) (not (specificallyDependsOnAt x y t)))) // axiom label in BFO2 CLIF: [013-002]
has associated axiom(fol): (forall (x y t) (if (and (Occurrent x) (IndependentContinuant y) (specificallyDependsOnAt x y t)) (forall (t_1) (if (existsAt x t_1) (specificallyDependsOnAt x y t_1))))) // axiom label in BFO2 CLIF: [015-002]
has associated axiom(fol): (forall (x y t) (if (specificallyDependsOnAt x y t) (exists (z) (and (IndependentContinuant z) (not (SpatialRegion z)) (specificallyDependsOnAt x z t))))) // axiom label in BFO2 CLIF: [136-001]
has associated axiom(fol): (forall (x y z t) (if (and (specificallyDependsOnAt x y t) (specificallyDependsOnAt y z t)) (specificallyDependsOnAt x z t))) // axiom label in BFO2 CLIF: [054-002]
has associated axiom(fol): (forall (x) (if (exists (y t) (specificallyDependsOnAt x y t)) (not (MaterialEntity x)))) // axiom label in BFO2 CLIF: [052-001]

located in at some time
type: ObjectProperty
domain: independent continuant
range: independent continuant
BFO OWL specification label: located-in_st
BFO CLIF specification label: locatedInAt
example of usage: Mary located_in Salzburg
example of usage: the Empire State Building located_in New York.
example of usage: this portion of cocaine located_in this portion of blood
example of usage: this stem cell located_in this portion of bone marrow
example of usage: your arm located_in your body
definition: b located_in c at t = Def. b and c are independent continuants, and the region at which b is located at t is a (proper or improper) continuant_part_of the region at which c is located at t. (axiom label in BFO2 Reference: [045-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'located in at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'located in@en'(x,y,t)
editor note: BFO2 Reference: independent continuant
imported from: vo.owl
has associated axiom(nl): Located_in is transitive. (axiom label in BFO2 Reference: [046-001])
has associated axiom(nl): for all independent continuants b, c, and d: if b continuant_part_of c at t & c located_in d at t, then b located_in d at t. (axiom label in BFO2 Reference: [048-001])
has associated axiom(nl): for all independent continuants b, c, and d: if b located_in c at t & c continuant_part_of d at t, then b located_in d at t. (axiom label in BFO2 Reference: [049-001])
has associated axiom(fol): (forall (x y z t) (if (and (IndependentContinuant x) (IndependentContinuant y) (IndependentContinuant z) (continuantPartOfAt x y t) (locatedInAt y z t)) (locatedInAt x z t))) // axiom label in BFO2 CLIF: [048-001]
has associated axiom(fol): (forall (x y z t) (if (and (IndependentContinuant x) (IndependentContinuant y) (IndependentContinuant z) (locatedInAt x y t) (continuantPartOfAt y z t)) (locatedInAt x z t))) // axiom label in BFO2 CLIF: [049-001]
has associated axiom(fol): (forall (x y z t) (if (and (locatedInAt x y t) (locatedInAt y z t)) (locatedInAt x z t))) // axiom label in BFO2 CLIF: [046-001]
has associated axiom(fol): (iff (locatedInAt a b t) (and (IndependentContinuant a) (IndependentContinuant b) (exists (r_1 r_2) (and (occupiesSpatialRegionAt a r_1 t) (occupiesSpatialRegionAt b r_2 t) (continuantPartOfAt r_1 r_2 t))))) // axiom label in BFO2 CLIF: [045-001]

part of continuant at some time
type: ObjectProperty
inverse of: has continuant part at some time
domain: continuant
range: continuant
BFO OWL specification label: c-part-of_st
BFO CLIF specification label: continuantPartOfAt
example of usage: Mary’s arm continuant_part_of Mary in the time of her life prior to her operation
example of usage: the Northern hemisphere of the planet Earth is a part of the planet Earth at all times at which the planet Earth exists.
definition: [copied from inverse property 'has continuant part at some time'] b has_continuant_part c at t = Def. c continuant_part_of b at t. (axiom label in BFO2 Reference: [006-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'part of continuant at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'part of continuant@en'(x,y,t)
editor note: BFO 2 Reference: Immaterial entities are in some cases continuant parts of their material hosts. Thus the hold of a ship, for example, is a part of the ship; it may itself have parts, which may have names (used for example by ship stow planners, customs inspectors, and the like). Immaterial entities under both 1. and 2. can be of zero, one, two or three dimensions. We define:a(immaterial entity)[Definition: a is an immaterial entity = Def. a is an independent continuant that has no material entities as parts. (axiom label in BFO2 Reference: [028-001])
editor note: BFO 2 Reference: a (continuant or occurrent) part of itself. We appreciate that this is counterintuitive for some users, since it implies for example that President Obama is a part of himself. However it brings benefits in simplifying the logical formalism, and it captures an important feature of identity, namely that it is the limit case of mereological inclusion.
editor note: BFO2 Reference: continuant
editor note: BFO2 Reference: continuantThe range for ‘t’ (as in all cases throughout this document unless otherwise specified) is: temporal region.
editor note: [copied from inverse property 'has continuant part at some time'] Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'has continuant part at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'has continuant part@en'(x,y,t)
imported from: ogg.owl
imported from: vo.owl
elucidation: b continuant_part_of c at t =Def. b is a part of c at t & t is a time & b and c are continuants. (axiom label in BFO2 Reference: [002-001])
has associated axiom(nl): continuant_part_of is antisymmetric. (axiom label in BFO2 Reference: [120-001])
has associated axiom(nl): continuant_part_of is reflexive (every continuant entity is a continuant_part_of itself). (axiom label in BFO2 Reference: [111-002])
has associated axiom(nl): continuant_part_of is transitive. (axiom label in BFO2 Reference: [110-001])
has associated axiom(nl): continuant_part_of satisfies unique product. (axiom label in BFO2 Reference: [122-001])
has associated axiom(nl): continuant_part_of satisfies weak supplementation. (axiom label in BFO2 Reference: [121-001])
has associated axiom(nl): if b continuant_part_of c at t and b is an independent continuant, then b is located_in c at t. (axiom label in BFO2 Reference: [047-002])
has associated axiom(fol): (forall (x t) (if (Continuant x) (continuantPartOfAt x x t))) // axiom label in BFO2 CLIF: [111-002]
has associated axiom(fol): (forall (x y t) (if (and (continuantPartOfAt x y t) (IndependentContinuant x)) (locatedInAt x y t))) // axiom label in BFO2 CLIF: [047-002]
has associated axiom(fol): (forall (x y t) (if (and (continuantPartOfAt x y t) (continuantPartOfAt y x t)) (= x y))) // axiom label in BFO2 CLIF: [120-001]
has associated axiom(fol): (forall (x y t) (if (and (continuantPartOfAt x y t) (not (= x y))) (exists (z) (and (continuantPartOfAt z y t) (not (exists (w) (and (continuantPartOfAt w x t) (continuantPartOfAt w z t)))))))) // axiom label in BFO2 CLIF: [121-001]
has associated axiom(fol): (forall (x y t) (if (exists (v) (and (continuantPartOfAt v x t) (continuantPartOfAt v y t))) (exists (z) (forall (u w) (iff (iff (continuantPartOfAt w u t) (and (continuantPartOfAt w x t) (continuantPartOfAt w y t))) (= z u)))))) // axiom label in BFO2 CLIF: [122-001]
has associated axiom(fol): (forall (x y z t) (if (and (continuantPartOfAt x y t) (continuantPartOfAt y z t)) (continuantPartOfAt x z t))) // axiom label in BFO2 CLIF: [110-001]
has associated axiom(fol): (iff (ImmaterialEntity a) (and (IndependentContinuant a) (not (exists (b t) (and (MaterialEntity b) (continuantPartOfAt b a t)))))) // axiom label in BFO2 CLIF: [028-001]

part of continuant at all times
type: ObjectProperty
sub property of: part of continuant at some time
inverse of: has continuant part at all times that part exists
type: TransitiveProperty
BFO OWL specification label: c-part-of_at
BFO CLIF specification label: continuantPartOfAt
example of usage: Mary’s arm continuant_part_of Mary in the time of her life prior to her operation
example of usage: the Northern hemisphere of the planet Earth is a part of the planet Earth at all times at which the planet Earth exists.
definition: [copied from inverse property 'has continuant part at all times that part exists'] forall(t) exists_at(y,t) -> exists_at(x,t) and 'has continuant part'(x,y,t)
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'part of continuant at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'part of continuant@en(x,y,t)'.
editor note: BFO 2 Reference: Immaterial entities are in some cases continuant parts of their material hosts. Thus the hold of a ship, for example, is a part of the ship; it may itself have parts, which may have names (used for example by ship stow planners, customs inspectors, and the like). Immaterial entities under both 1. and 2. can be of zero, one, two or three dimensions. We define:a(immaterial entity)[Definition: a is an immaterial entity = Def. a is an independent continuant that has no material entities as parts. (axiom label in BFO2 Reference: [028-001])
editor note: BFO 2 Reference: a (continuant or occurrent) part of itself. We appreciate that this is counterintuitive for some users, since it implies for example that President Obama is a part of himself. However it brings benefits in simplifying the logical formalism, and it captures an important feature of identity, namely that it is the limit case of mereological inclusion.
editor note: BFO2 Reference: continuant
editor note: BFO2 Reference: continuantThe range for ‘t’ (as in all cases throughout this document unless otherwise specified) is: temporal region.
editor note: [copied from inverse property 'has continuant part at all times that part exists'] This is a binary version of a ternary time-indexed, instance level, relation. Unlike the rest of the temporalized relations which temporally quantify over existence of the subject of the relation, this relation temporally quantifies over the existence of the object of the relation. The relation is provided tentatively, to assess whether the GO needs such a relation. It is inverse of 'part of continuant at all times'
imported from: ogg.owl
imported from: vo.owl
elucidation: b continuant_part_of c at t =Def. b is a part of c at t & t is a time & b and c are continuants. (axiom label in BFO2 Reference: [002-001])
has associated axiom(nl): continuant_part_of is antisymmetric. (axiom label in BFO2 Reference: [120-001])
has associated axiom(nl): continuant_part_of is reflexive (every continuant entity is a continuant_part_of itself). (axiom label in BFO2 Reference: [111-002])
has associated axiom(nl): continuant_part_of is transitive. (axiom label in BFO2 Reference: [110-001])
has associated axiom(nl): continuant_part_of satisfies unique product. (axiom label in BFO2 Reference: [122-001])
has associated axiom(nl): continuant_part_of satisfies weak supplementation. (axiom label in BFO2 Reference: [121-001])
has associated axiom(nl): if b continuant_part_of c at t and b is an independent continuant, then b is located_in c at t. (axiom label in BFO2 Reference: [047-002])
has associated axiom(fol): (forall (x t) (if (Continuant x) (continuantPartOfAt x x t))) // axiom label in BFO2 CLIF: [111-002]
has associated axiom(fol): (forall (x y t) (if (and (continuantPartOfAt x y t) (IndependentContinuant x)) (locatedInAt x y t))) // axiom label in BFO2 CLIF: [047-002]
has associated axiom(fol): (forall (x y t) (if (and (continuantPartOfAt x y t) (continuantPartOfAt y x t)) (= x y))) // axiom label in BFO2 CLIF: [120-001]
has associated axiom(fol): (forall (x y t) (if (and (continuantPartOfAt x y t) (not (= x y))) (exists (z) (and (continuantPartOfAt z y t) (not (exists (w) (and (continuantPartOfAt w x t) (continuantPartOfAt w z t)))))))) // axiom label in BFO2 CLIF: [121-001]
has associated axiom(fol): (forall (x y t) (if (exists (v) (and (continuantPartOfAt v x t) (continuantPartOfAt v y t))) (exists (z) (forall (u w) (iff (iff (continuantPartOfAt w u t) (and (continuantPartOfAt w x t) (continuantPartOfAt w y t))) (= z u)))))) // axiom label in BFO2 CLIF: [122-001]
has associated axiom(fol): (forall (x y z t) (if (and (continuantPartOfAt x y t) (continuantPartOfAt y z t)) (continuantPartOfAt x z t))) // axiom label in BFO2 CLIF: [110-001]
has associated axiom(fol): (iff (ImmaterialEntity a) (and (IndependentContinuant a) (not (exists (b t) (and (MaterialEntity b) (continuantPartOfAt b a t)))))) // axiom label in BFO2 CLIF: [028-001]

has continuant part at some time
type: ObjectProperty
domain: continuant
range: continuant
BFO OWL specification label: c-has-part_st
BFO CLIF specification label: hasContinuantPartAt
example of usage: [copied from inverse property 'part of continuant at some time'] Mary’s arm continuant_part_of Mary in the time of her life prior to her operation
example of usage: [copied from inverse property 'part of continuant at some time'] the Northern hemisphere of the planet Earth is a part of the planet Earth at all times at which the planet Earth exists.
definition: b has_continuant_part c at t = Def. c continuant_part_of b at t. (axiom label in BFO2 Reference: [006-001])
editor note: Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'has continuant part at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'has continuant part@en'(x,y,t)
editor note: [copied from inverse property 'part of continuant at some time'] Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance level, relation. The BFO reading of the binary relation 'part of continuant at some time@en' is: exists t, exists_at(x,t) & exists_at(y,t) & 'part of continuant@en'(x,y,t)
editor note: [copied from inverse property 'part of continuant at some time'] BFO 2 Reference: Immaterial entities are in some cases continuant parts of their material hosts. Thus the hold of a ship, for example, is a part of the ship; it may itself have parts, which may have names (used for example by ship stow planners, customs inspectors, and the like). Immaterial entities under both 1. and 2. can be of zero, one, two or three dimensions. We define:a(immaterial entity)[Definition: a is an immaterial entity = Def. a is an independent continuant that has no material entities as parts. (axiom label in BFO2 Reference: [028-001])
editor note: [copied from inverse property 'part of continuant at some time'] BFO 2 Reference: a (continuant or occurrent) part of itself. We appreciate that this is counterintuitive for some users, since it implies for example that President Obama is a part of himself. However it brings benefits in simplifying the logical formalism, and it captures an important feature of identity, namely that it is the limit case of mereological inclusion.
editor note: [copied from inverse property 'part of continuant at some time'] BFO2 Reference: continuant
editor note: [copied from inverse property 'part of continuant at some time'] BFO2 Reference: continuantThe range for ‘t’ (as in all cases throughout this document unless otherwise specified) is: temporal region.
imported from: ogg.owl
imported from: vo.owl
elucidation: [copied from inverse property 'part of continuant at some time'] b continuant_part_of c at t =Def. b is a part of c at t & t is a time & b and c are continuants. (axiom label in BFO2 Reference: [002-001])
has associated axiom(fol): (iff (hasContinuantPartAt a b t) (continuantPartOfAt b a t)) // axiom label in BFO2 CLIF: [006-001]

part of continuant at all times that whole exists
type: ObjectProperty
sub property of: part of continuant at some time
type: TransitiveProperty
domain: continuant
range: continuant
BFO OWL specification label: c-part-of-object_at
definition: [copied from inverse property 'has continuant part at all times'] b has_continuant_part c at t = Def. c continuant_part_of b at t. (axiom label in BFO2 Reference: [006-001])
definition: forall(t) exists_at(y,t) -> exists_at(x,t) and 'part of continuant'(x,y,t)
editor note: This is a binary version of a ternary time-indexed, instance level, relation. Unlike the rest of the temporalized relations which temporally quantify over existence of the subject of the relation, this relation temporally quantifies over the existence of the object of the relation. The relation is provided tentatively, to assess whether the GO needs such a relation. It is inverse of 'has continuant part at all times'
editor note: [copied from inverse property 'has continuant part at all times'] Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'has continuant part at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'has continuant part@en(x,y,t)'.
imported from: ogg.owl
imported from: vo.owl

has continuant part at all times that part exists
type: ObjectProperty
sub property of: has continuant part at some time
type: TransitiveProperty
domain: continuant
range: continuant
BFO OWL specification label: c-has-part-object_at
example of usage: [copied from inverse property 'part of continuant at all times'] Mary’s arm continuant_part_of Mary in the time of her life prior to her operation
example of usage: [copied from inverse property 'part of continuant at all times'] the Northern hemisphere of the planet Earth is a part of the planet Earth at all times at which the planet Earth exists.
definition: forall(t) exists_at(y,t) -> exists_at(x,t) and 'has continuant part'(x,y,t)
editor note: This is a binary version of a ternary time-indexed, instance level, relation. Unlike the rest of the temporalized relations which temporally quantify over existence of the subject of the relation, this relation temporally quantifies over the existence of the object of the relation. The relation is provided tentatively, to assess whether the GO needs such a relation. It is inverse of 'part of continuant at all times'
editor note: [copied from inverse property 'part of continuant at all times'] Alan Ruttenberg: This is a binary version of a ternary time-indexed, instance-level, relation. The BFO reading of the binary relation 'part of continuant at all times@en' is: forall(t) exists_at(x,t) -> exists_at(y,t) and 'part of continuant@en(x,y,t)'.
editor note: [copied from inverse property 'part of continuant at all times'] BFO 2 Reference: Immaterial entities are in some cases continuant parts of their material hosts. Thus the hold of a ship, for example, is a part of the ship; it may itself have parts, which may have names (used for example by ship stow planners, customs inspectors, and the like). Immaterial entities under both 1. and 2. can be of zero, one, two or three dimensions. We define:a(immaterial entity)[Definition: a is an immaterial entity = Def. a is an independent continuant that has no material entities as parts. (axiom label in BFO2 Reference: [028-001])
editor note: [copied from inverse property 'part of continuant at all times'] BFO 2 Reference: a (continuant or occurrent) part of itself. We appreciate that this is counterintuitive for some users, since it implies for example that President Obama is a part of himself. However it brings benefits in simplifying the logical formalism, and it captures an important feature of identity, namely that it is the limit case of mereological inclusion.
editor note: [copied from inverse property 'part of continuant at all times'] BFO2 Reference: continuant
editor note: [copied from inverse property 'part of continuant at all times'] BFO2 Reference: continuantThe range for ‘t’ (as in all cases throughout this document unless otherwise specified) is: temporal region.
imported from: ogg.owl
imported from: vo.owl
elucidation: [copied from inverse property 'part of continuant at all times'] b continuant_part_of c at t =Def. b is a part of c at t & t is a time & b and c are continuants. (axiom label in BFO2 Reference: [002-001])

has measurement unit label
type: ObjectProperty
sub property of: has part
type: FunctionalProperty
range: measurement unit label

obsolete_specifically denotes
type: ObjectProperty
sub property of: ObsoleteProperty
example of usage: The process of creation is, for example, writing down on paper the name of a friend by deliberately creating a certain pattern using ink. Here the ink + paper is the independent continuant and the carrier is the pattern in the ink. c = pattern in the ink b = paper + ink r = friend
has curation status: pending final vetting
definition: c specifically denotes r =def r is a portion of reality & c is a particular quality & c depends specifically on some independent continuant b & b acquired c as the result of the achievement of an objective to enable pointing to r repeatedly. Marked means there is a changed or additional quality of the bearer - the quality is the information carrier. Case 1 Memory trace as mark created when reading some description of some friend. The trace can denote. Case 2 Pattern of ink arrayed on paper as mark when writing down a friend's name Case 3 Pattern of magnetic domains on scattered pieces of a hard disk platter as mark when saving a file.
editor note: 8/6/2009 Alan Ruttenberg: The suggestions is to deprecate specific and generically denotes in favor of a single denote relationship that corresponds to the generic sense
editor note: see https://github.com/information-artifact-ontology/IAO/issues/25&q=denote
definition editor: Alan Ruttenberg
definition source: Smith, Ceusters, Ruttenberg, 2000 years of philosophy
has obsolescence reason: failed exploratory term
deprecated: true

is about
type: ObjectProperty
domain: information content entity
editor preferred term: is about
example of usage: This document is about information artifacts and their representations
has curation status: pending final vetting
definition: A (currently) primitive relation that relates an information artifact to an entity.
definition: is_about is a (currently) primitive relation that relates an information artifact to an entity.
editor note: 7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of "mentions" relation. Weaken the is_about relationship to be primitive. We will try to build it back up by elaborating the various subproperties that are more precisely defined. Some currently missing phenomena that should be considered "about" are predications - "The only person who knows the answer is sitting beside me" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic.
definition editor: person:Alan Ruttenberg
definition source: Smith, Ceusters, Ruttenberg, 2000 years of philosophy
imported from: ico.owl
imported from: obi.owl

mentions
type: ObjectProperty
sub property of: is about
inverse of: mentioned by
has curation status: pending final vetting
definition: An information artifact IA mentions an entity E exactly when it has a component/part that denotes E
editor note: 7/6/2009 Alan Ruttenberg. P4 RC1 munges our GCI so remove it for now: mentions some entity equivalentTo has_part some ('generically denotes' some entity)
editor note: 7/6/2009 Alan Ruttenberg: Add this relation following conversation with Jonathan Rees that N&S GCI for is_about was too strong. Really it was simply sufficient. To effect this change we introduce this relation, which is subproperty of is_about, and have previous GCI use this relation "mentions" in it's (logical) definition
definition editor: PERSON: Jonathan Rees
definition editor: Person: Alan Ruttenberg

mentioned by
type: ObjectProperty
definition: Inverse of the relation 'mentions'
definition editor: http://orcid.org/0000-0002-8844-9165
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/250
date: 2022-01-28T07:20:08Z

denotes
type: ObjectProperty
sub property of: is about
inverse of: denoted by
domain: information content entity
range: entity
example of usage: A person's name denotes the person. A variable name in a computer program denotes some piece of memory. Lexically equivalent strings can denote different things, for instance "Alan" can denote different people. In each case of use, there is a case of the denotation relation obtaining, between "Alan" and the person that is being named.
definition: A primitive, instance-level, relation obtaining between an information content entity and some portion of reality. Denotation is what happens when someone creates an information content entity E in order to specifically refer to something. The only relation between E and the thing is that E can be used to 'pick out' the thing. This relation connects those two together. Freedictionary.com sense 3: To signify directly; refer to specifically
editor note: 2009-11-10 Alan Ruttenberg. Old definition said the following to emphasize the generic nature of this relation. We no longer have 'specifically denotes', which would have been primitive, so make this relation primitive. g denotes r =def r is a portion of reality there is some c that is a concretization of g every c that is a concretization of g specifically denotes r
definition editor: person:Alan Ruttenberg
definition source: Conversations with Barry Smith, Werner Ceusters, Bjoern Peters, Michel Dumontier, Melanie Courtot, James Malone, Bill Hogan

obsolete_materially denotes
type: ObjectProperty
sub property of: ObsoleteProperty
editor note: see https://github.com/information-artifact-ontology/IAO/issues/25&q=denote
has obsolescence reason: failed exploratory term
deprecated: true

is quality measurement of
type: ObjectProperty
sub property of: is about
inverse of: is quality measured as
domain: measurement datum
range: quality
definition: m is a quality measurement of q at t. When q is a quality, there is a measurement process p that has specified output m, a measurement datum, that is about q
editor note: 8/6/2009 Alan Ruttenberg: The strategy is to be rather specific with this relationship. There are other kinds of measurements that are not of qualities, such as those that measure time. We will add these as separate properties for the moment and see about generalizing later
editor note: From the second IAO workshop [Alan Ruttenberg 8/6/2009: not completely current, though bringing in comparison is probably important] This one is the one we are struggling with at the moment. The issue is what a measurement measures. On the one hand saying that it measures the quality would include it "measuring" the bearer = referring to the bearer in the measurement. However this makes comparisons of two different things not possible. On the other hand not having it inhere in the bearer, on the face of it, breaks the audit trail. Werner suggests a solution based on "Magnitudes" a proposal for which we are awaiting details. -- From the second IAO workshop, various comments, [commented on by Alan Ruttenberg 8/6/2009] unit of measure is a quality, e.g. the length of a ruler. [We decided to hedge on what units of measure are, instead talking about measurement unit labels, which are the information content entities that are about whatever measurement units are. For IAO we need that information entity in any case. See the term measurement unit label] [Some struggling with the various subflavors of is_about. We subsequently removed the relation represents, and describes until and only when we have a better theory] a represents b means either a denotes b or a describes describe: a describes b means a is about b and a allows an inference of at least one quality of b We have had a long discussion about denotes versus describes.
editor note: From the second IAO workshop: An attempt at tieing the quality to the measurement datum more carefully. a is a magnitude means a is a determinate quality particular inhering in some bearer b existing at a time t that can be represented/denoted by an information content entity e that has parts denoting a unit of measure, a number, and b. The unit of measure is an instance of the determinable quality.
editor note: From the second meeting on IAO: An attempt at defining assay using Barry's "reliability" wording assay: process and has_input some material entity and has_output some information content entity and which is such that instances of this process type reliably generate outputs that describes the input.
editor note: This one is the one we are struggling with at the moment. The issue is what a measurement measures. On the one hand saying that it measures the quality would include it "measuring" the bearer = referring to the bearer in the measurement. However this makes comparisons of two different things not possible. On the other hand not having it inhere in the bearer, on the face of it, breaks the audit trail. Werner suggests a solution based on "Magnitudes" a proposal for which we are awaiting details.
definition editor: Alan Ruttenberg

obsolete_describes
type: ObjectProperty
sub property of: ObsoleteProperty
has obsolescence reason: failed exploratory term
deprecated: true

obsolete_represents
type: ObjectProperty
sub property of: ObsoleteProperty
has obsolescence reason: failed exploratory term
deprecated: true

denoted by
type: ObjectProperty
domain: entity
range: information content entity
definition: inverse of the relation 'denotes'
definition editor: Person: Jie Zheng, Chris Stoeckert, Mike Conlon
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/206

has coordinate unit label
type: ObjectProperty
sub property of: has part
type: FunctionalProperty
domain: cartesian spatial coordinate datum
range: length unit
comment: relating a cartesian spatial coordinate datum to a unit label that together with the values represent a point

is duration of
type: ObjectProperty
sub property of: is about
domain: time measurement datum
range: process
has curation status: metadata complete
definition: relates a process to a time-measurement-datum that represents the duration of the process
definition editor: Person:Alan Ruttenberg

is quality measured as
type: ObjectProperty
has curation status: metadata complete
definition: inverse of the relation of is quality measurement of
editor note: 2009/10/19 Alan Ruttenberg. Named 'junk' relation useful in restrictions, but not a real instance relationship
definition editor: Person:Alan Ruttenberg

is quality specification of
type: ObjectProperty
sub property of: is about
inverse of: quality is specified as
has curation status: metadata complete
definition: A relation between a data item and a quality of a material entity where the material entity is the specified output of a material transformation which achieves an objective specification that indicates the intended value of the specified quality.
definition editor: Person:Alan Ruttenberg
definition editor: Person:Bjoern Peters

quality is specified as
type: ObjectProperty
has curation status: metadata complete
definition: inverse of the relation of is quality specification of
editor note: 2009/10/19 Alan Ruttenberg. Named 'junk' relation useful in restrictions, but not a real instance relationship
definition editor: Person:Alan Ruttenberg
definition editor: Person:Bjoern Peters

has time stamp
type: ObjectProperty
sub property of: has part
type: FunctionalProperty
domain: time stamped measurement datum
range: time measurement datum
has curation status: metadata incomplete
definition: relates a time stamped measurement datum to the time measurement datum that denotes the time when the measurement was taken
definition editor: Alan Ruttenberg

has measurement datum
type: ObjectProperty
sub property of: has part
domain: time stamped measurement datum
range: Class
  intersection of: measurement datum
  intersection of: Class
    complement of: time measurement datum
has curation status: metadata incomplete
definition: relates a time stamped measurement datum to the measurement datum that was measured
definition editor: Alan Ruttenberg

is associated with review board approval number
type: ObjectProperty
domain: informed consent form
range: review board approval number
imported from: ico.owl
creator: EE, YH, YL, AK, MH
creator: a relation that links an informed consent form to an associated IRB number

is assigned by organization
type: ObjectProperty
definition: an object perperty that represents a relation between a unique identifier (ID) and an organization that assigns the ID.
imported from: ico.owl
creator: YH, EE, YL, AK, MH

has participant quality
type: ObjectProperty

adverse event occurs in
type: ObjectProperty

owns
type: ObjectProperty
sub property of: topObjectProperty
inverse of: is owned by
type: AsymmetricProperty
definition editor: Mathias Brochhausen
elucidation: This is a primitive relation. This relation is the foundation to the owners right to have the owned entity at his/her full disposal.
Source: Reinach, A. Sämtliche Werke. Texkritische Ausgabe, München: Philosophia Verlag, 1989, p.189-204.

is owned by
type: ObjectProperty
type: AsymmetricProperty
definition: a is owned by b if b has complete power over a. All rights and obligations of ownership are grounded in this (primitive) relation. The claims and obligations of ownership can be partially transferred to a third party by the owner, b.
definition source: Reinach, A. Sämtliche Werke. Texkritische Ausgabe, München: Philosophia Verlag, 1989, p.189-204.

is_supported_by_data
type: ObjectProperty
domain: conclusion based on data
range: data item
editor preferred term: is_supported_by_data
example of usage: The relation between the conclusion "Gene tpbA is involved in EPS production" and the data items produced using two sets of organisms, one being a tpbA knockout, the other being tpbA wildtype tested in polysacharide production assays and analyzed using an ANOVA.
has curation status: ready for release
definition: The relation between a data item and a conclusion where the conclusion is the output of a data interpreting process and the data item is used as an input to that process
definition editor: OBI
definition source: OBI
definition source: Philly 2011 workshop
imported from: ico.owl
imported from: obi.owl

is_specified_input_of
type: ObjectProperty
sub property of: participates_in
sub property of: participates in
range: planned process
editor preferred term: is_specified_input_of
example of usage: some Autologous EBV(Epstein-Barr virus)-transformed B-LCL (B lymphocyte cell line) is_input_for instance of Chromum Release Assay described at https://wiki.cbil.upenn.edu/obiwiki/index.php/Chromium_Release_assay
has curation status: ready for release
definition: A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of.
definition editor: Alan Ruttenberg
definition editor: PERSON:Bjoern Peters
imported from: ico.owl
imported from: obi.owl
imported from: vo.owl

is_manufactured_by
type: ObjectProperty
editor preferred term: is_manufactured_by
example of usage: http://www.affymetrix.com/products/arrays/specific/hgu133.affx is_manufactered_by http://www.affymetrix.com/ (if we decide to use these URIs for the actual entities)
definition: c is_manufactured_by o means that there was a process p in which c was built in which a person, or set of people or machines did the work(bore the "Manufacturer Role", and those people/and or machines were members or of directed by the organization to do this.
definition editor: Alan Ruttenberg
definition editor: Liju Fan
alternative term: has_make
alternative term: has_manufacturer
imported from: obi.owl
imported from: vo.owl

is specified output of
type: ObjectProperty
sub property of: participates_in
sub property of: participates in
range: planned process
editor preferred term: is specified output of
editor preferred term: is_specified_output_of
has curation status: ready for release
definition: A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of.
definition editor: Alan Ruttenberg
definition editor: PERSON:Bjoern Peters
imported from: ico.owl
imported from: obi.owl
imported from: vo.owl
label: is_specified_output_of

achieves_planned_objective
type: ObjectProperty
editor preferred term: achieves_planned_objective
example of usage: A cell sorting process achieves the objective specification 'material separation objective'
definition: This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process.
definition editor: BP, AR, PPPB branch
definition source: PPPB branch derived
curator note: modified according to email thread from 1/23/09 in accordince with DT and PPPB branch
imported from: obi.owl
imported from: vo.owl

objective_achieved_by
type: ObjectProperty
domain: objective specification
range: planned process
editor preferred term: objective_achieved_by
has curation status: ready for release
definition: This relation obtains between a a objective specification and a planned process when the criteria specified in the objective specification are met at the end of the planned process.
definition editor: OBI
definition source: OBI
imported from: ico.owl
imported from: obi.owl

is member of organization
type: ObjectProperty
inverse of: has organization member
range: organization
editor preferred term: is member of organization
has curation status: metadata complete
definition: Relating a legal person or organization to an organization in the case where the legal person or organization has a role as member of the organization.
editor note: 2009/10/01 Alan Ruttenberg. Barry prefers generic is-member-of. Question of what the range should be. For now organization. Is organization a population? Would the same relation be used to record members of a population
editor note: JZ: Discussed on May 7, 2012 OBI dev call. Bjoern points out that we need to allow for organizations to be members of organizations. And agreed by the other OBI developers. So, human and organization were specified in 'Domains'. The textual definition was updated based on it.
definition editor: Person:Alan Ruttenberg
definition editor: Person:Helen Parkinson
definition source: Person:Alan Ruttenberg
definition source: Person:Helen Parkinson
curator note: 2009/09/28 Alan Ruttenberg. Fucoidan-use-case

has organization member
type: ObjectProperty
domain: organization
editor preferred term: has organization member
has curation status: metadata incomplete
definition: Relating an organization to a legal person or organization.
editor note: See tracker: https://sourceforge.net/tracker/index.php?func=detail&aid=3512902&group_id=177891&atid=886178
definition editor: Person: Jie Zheng

is genome of organism
type: ObjectProperty
sub property of: part of continuant at some time
definition: a 'part of continuant at some time' relation that incides a genome belongs to a organism.
definition editor: Yongqun He, Bin Zhao
imported from: ogg.owl
imported from: vo.owl

is gene of organism
type: ObjectProperty
sub property of: part of continuant at some time
range: organism
definition: a relation between a gene and the organism where this gene belongs to the organism in nature. It does not include a foreign gene that is transferred to an organism by a genetic engineering method.
definition editor: Oliver He, Yue Liu
imported from: ogg.owl
imported from: vo.owl

obsolete owns
type: ObjectProperty
sub property of: ObsoleteProperty
definition editor: Mathias Brochhausen
term replaced by: owns
deprecated: true

obsolete administrates
type: ObjectProperty
sub property of: ObsoleteProperty
definition editor: Mathias Brochhausen
term replaced by: OBIB_0000733
deprecated: true

obsolete is owned by
type: ObjectProperty
definition source: Reinach, A. S�mtliche Werke. Texkritische Ausgabe, M�nchen: Philosophia Verlag, 1989, p.189-204.
term replaced by: is owned by

obsolete is-aggregate-of
type: ObjectProperty
has obsolescence reason: BFO relation takes precedence.
comment: We anticipate BFO 2.0 including and defining this relation. When it does, we will obsolete this property and declare it equivalent to the BFO 2.0 relation.
deprecated: true

obsolete is-component-of-aggregate
type: ObjectProperty
sub property of: ObsoleteProperty
comment: At the instance level, this relation is the named inverse of is-aggregate-of. At the type level, however, not so. We expect BFO 2.0 to have this relation as well, and we will obsolete this property and declare it equivalent to BFO's version when BFO 2.0 comes out.
deprecated: true

is administered by
type: ObjectProperty
type: AsymmetricProperty

is enrolled in school
type: ObjectProperty
type: AsymmetricProperty
domain: Restriction
  on property: bearer of
  some values from: student role
range: school organization

is admitted to hospital
type: ObjectProperty
sub property of: topObjectProperty
domain: Restriction
  on property: bearer of
  some values from: patient role
range: hospital organization

provides service
type: ObjectProperty

is abuse of
type: ObjectProperty
definition: Relation between an abusive behavior and one upon whom it is inflicted.
definition editor: Matthew Diller
contributor: S. Clint Dowland

has aggressor
type: ObjectProperty
definition: Relation between an abusive behavior and one who inflicts it upon someone or something else.
definition editor: Matthew Diller
contributor: S. Clint Dowland

lives in
type: ObjectProperty
domain: household
range: material entity
definition: A relation between a household and a material entity that the household stores their possessions in and sleeps in habitually.

demarcates
type: ObjectProperty
sub property of: is about
inverse of: demarcated by
domain: categorization scheme
definition: Relation in which a categorization scheme stands to each category into which it partitions things.
definition editor: Matthew Diller
contributor: S. Clint Dowland
contributor: William R. Hogan

demarcated by
type: ObjectProperty
range: categorization scheme
definition: Relation in which a category stands to the categorization scheme that demarcates it as a category.
definition editor: Matthew Diller
contributor: S. Clint Dowland
contributor: William R. Hogan

has primary data subject
type: ObjectProperty
sub property of: is about
inverse of: primary data subject of
domain: information content entity
range: Homo sapiens
definition: Relation in which a data item stands to the person it is both about and primarily associated with.
definition editor: Matthew Diller
contributor: S. Clint Dowland
contributor: William R. Hogan

primary data subject of
type: ObjectProperty
domain: Homo sapiens
range: information content entity
definition: The inverse of has primary data subject.
definition editor: Matthew Diller
contributor: S. Clint Dowland
contributor: William R. Hogan

has reporter
type: ObjectProperty
sub property of: has participant
inverse of: reporter of
domain: personal data disclosure
range: Homo sapiens
definition: Relation in which a personal data disclosure stands to the person who performs it by disclosing data items about someone.
definition editor: Matthew Diller
contributor: S. Clint Dowland
contributor: William R. Hogan

reporter of
type: ObjectProperty
sub property of: participates in
domain: Homo sapiens
range: personal data disclosure
definition: The inverse of has reporter.
definition editor: Matthew Diller
contributor: S. Clint Dowland
contributor: William R. Hogan

characteristic of
type: ObjectProperty
sub property of: characteristic of part of
inverse of: bearer of
type: FunctionalProperty
editor preferred term: inheres in
example of usage: this fragility inheres in this vase
example of usage: this fragility is a characteristic of this vase
example of usage: this red color inheres in this apple
example of usage: this red color is a characteristic of this apple
definition: a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence.
definition: a relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence
editor note: A dependent inheres in its bearer at all times for which the dependent exists.
alternative term: inheres_in
imported from: ico.owl
imported from: obi.owl
temporal interpretation: axiom holds for all times
comment: Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.
label: inheres in

bearer of
type: ObjectProperty
type: InverseFunctionalProperty
range: specifically dependent continuant
editor preferred term: bearer of
example of usage: this apple is bearer of this red color
example of usage: this vase is bearer of this fragility
definition: Inverse of characteristic_of
definition: a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence
editor note: A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist.
alternative term: bearer_of
alternative term: is bearer of
imported from: ico.owl
imported from: obi.owl
imported from: ro.owl
temporal interpretation: axiom holds for all times
label: has characteristic

participates in
type: ObjectProperty
inverse of: has participant
domain: continuant
range: occurrent
editor preferred term: participates in
example of usage: this blood clot participates in this blood coagulation
example of usage: this input material (or this output material) participates in this process
example of usage: this investigator participates in this investigation
definition: a relation between a continuant and a process, in which the continuant is somehow involved in the process
alternative term: participates_in
imported from: ico.owl
imported from: obi.owl

has participant
type: ObjectProperty
domain: occurrent
range: continuant
property chain axiom: has part
property chain axiom: realizes
property chain axiom: characteristic of
editor preferred term: has participant
example of usage: this blood coagulation has participant this blood clot
example of usage: this investigation has participant this investigator
example of usage: this process has participant this input material (or this output material)
definition: a relation between a process and a continuant, in which the continuant is somehow involved in the process
editor note: Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.
alternative term: has_participant
imported from: ico.owl
imported from: obi.owl
Source: http://www.obofoundry.org/ro/#OBO_REL:has_participant
source: http://www.obofoundry.org/ro/#OBO_REL:has_participant

is concretized as
type: ObjectProperty
inverse of: concretizes
domain: generically dependent continuant
range: specifically dependent continuant
range: Class
  union of: process
  union of: specifically dependent continuant
example of usage: A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).
example of usage: An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).
definition: A relationship between a generically dependent continuant and a specifically dependent continuant or process, in which the generically dependent continuant depends on some independent continuant or process in virtue of the fact that the specifically dependent continuant or process also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants or processes.
definition: A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants.

concretizes
type: ObjectProperty
domain: specifically dependent continuant
domain: Class
  union of: process
  union of: specifically dependent continuant
range: generically dependent continuant
editor preferred term: concretizes
example of usage: A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant).
example of usage: An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process).
definition: A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant.
definition: A relationship between a specifically dependent continuant or process and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant or process also depends on that same independent continuant. Multiple specifically dependent continuants or processes can concretize the same generically dependent continuant.
imported from: ico.owl
imported from: obi.owl

function of
type: ObjectProperty
sub property of: characteristic of
inverse of: has function
domain: function
example of usage: this catalysis function is a function of this enzyme
definition: a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence
editor note: A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists.
alternative term: function_of
alternative term: is function of
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.

quality of
type: ObjectProperty
sub property of: characteristic of
inverse of: has quality
example of usage: this red color is a quality of this apple
definition: a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence
editor note: A quality inheres in its bearer at all times for which the quality exists.
alternative term: is quality of
alternative term: quality_of
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.

role of
type: ObjectProperty
sub property of: characteristic of
inverse of: has role
example of usage: this investigator role is a role of this person
definition: a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence
editor note: A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists.
alternative term: is role of
alternative term: role_of
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.

has function
type: ObjectProperty
sub property of: bearer of
domain: independent continuant
range: function
example of usage: this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)
definition: a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence
editor note: A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists.
alternative term: has_function

has quality
type: ObjectProperty
sub property of: bearer of
range: quality
example of usage: this apple has quality this red color
definition: a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence
editor note: A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist.
alternative term: has_quality
imported from: ro.owl

has role
type: ObjectProperty
sub property of: bearer of
domain: independent continuant
range: role
editor preferred term: has role
example of usage: this person has role this investigator role (more colloquially: this person has this role of investigator)
definition: a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence
editor note: A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists.
alternative term: has_role
imported from: ico.owl
imported from: obi.owl

has disposition
type: ObjectProperty
sub property of: bearer of
inverse of: disposition of
domain: independent continuant
range: disposition
definition: a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence

disposition of
type: ObjectProperty
sub property of: characteristic of
definition: inverse of has disposition
in_subset: RO_0002259
comment: This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.

derives from
type: ObjectProperty
inverse of: derives into
example of usage: this cell derives from this parent cell (cell division)
example of usage: this nucleus derives from this parent nucleus (nuclear division)
has curation status: pending final vetting
definition: a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
editor note: This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops from'.
alternative term: derives_from

derives into
type: ObjectProperty
example of usage: this parent cell derives into this cell (cell division)
example of usage: this parent nucleus derives into this nucleus (nuclear division)
has curation status: pending final vetting
definition: a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity
editor note: This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops into'. To avoid making statements about a future that may not come to pass, it is often better to use the backward-looking 'derives from' rather than the forward-looking 'derives into'.
alternative term: derives_into

location of
type: ObjectProperty
inverse of: located_in
type: TransitiveProperty
editor preferred term: is location of
example of usage: my head is the location of my brain
example of usage: this cage is the location of this rat
definition: a relation between two independent continuants, the location and the target, in which the target is entirely within the location
editor note: Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
alternative term: location_of
temporal interpretation: axiom holds for all times

located_in
type: ObjectProperty
type: TransitiveProperty
domain: independent continuant
domain: Class
  intersection of: independent continuant
  intersection of: Class
    complement of: spatial region
range: independent continuant
range: Class
  intersection of: independent continuant
  intersection of: Class
    complement of: spatial region
property chain axiom: subClassOf
editor preferred term: located in
example of usage: my brain is located in my head
example of usage: this rat is located in this cage
definition: a relation between two independent continuants, the target and the location, in which the target is entirely within the location
editor note: Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus
editor note: Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/
editor note: Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime
alternative term: located_in
imported from: gaz.owl
temporal interpretation: axiom holds for all times
Source: http://www.obofoundry.org/ro/#OBO_REL:located_in
database_cross_reference: RO:0001025
has_obo_namespace: file:/Users/michaelashburner/Desktop/gaz/gaz.obo
id: located_in
shorthand: located_in
label: located in
label: located_in (type level)

Axiom
annotated source: located_in
annotated property: domain
annotated target: independent continuant
editor note: This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.

Axiom
annotated source: located_in
annotated property: range
annotated target: independent continuant
editor note: This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation.

2D boundary of
type: ObjectProperty
inverse of: has 2D boundary
example of usage: the surface of my skin is a 2D boundary of my body
definition: a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity
editor note: A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts.
editor note: Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape.
alternative term: 2D_boundary_of
alternative term: boundary of
alternative term: is 2D boundary of
alternative term: is boundary of
temporal interpretation: axiom holds for all times

has 2D boundary
type: ObjectProperty
domain: material entity
range: immaterial entity
example of usage: my body has 2D boundary the surface of my skin
definition: a relation between a material entity and a 2D immaterial entity (the boundary), in which the boundary delimits the material entity
editor note: A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts.
editor note: Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape.
alternative term: has boundary
alternative term: has_2D_boundary
temporal interpretation: axiom holds for all times

occurrent part of
type: ObjectProperty
sub property of: part of
sub property of: causally upstream of or within
domain: occurrent
range: occurrent
definition: A part of relation that applies only between occurrents.

has regulatory component activity
type: ObjectProperty
sub property of: has component activity
sub property of: regulated by
definition: A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B.
created by: https://orcid.org/0000-0002-7073-9172
creation date: 2017-05-24T09:30:46Z

has negative regulatory component activity
type: ObjectProperty
sub property of: has regulatory component activity
sub property of: negatively regulated by
definition: A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.
created by: https://orcid.org/0000-0002-7073-9172
creation date: 2017-05-24T09:31:01Z
comment: By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'.

has positive regulatory component activity
type: ObjectProperty
sub property of: has regulatory component activity
sub property of: positively regulated by
definition: A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.
created by: https://orcid.org/0000-0002-7073-9172
creation date: 2017-05-24T09:31:17Z
comment: By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'.

has component activity
type: ObjectProperty
sub property of: has component process
created by: https://orcid.org/0000-0002-7073-9172
creation date: 2017-05-24T09:44:33Z
comment: A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B.

has component process
type: ObjectProperty
sub property of: has component
domain: process
range: process
definition: w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
created by: https://orcid.org/0000-0002-7073-9172
creation date: 2017-05-24T09:49:21Z

directly regulated by
type: ObjectProperty
sub property of: regulated by
inverse of: directly regulates
created by: https://orcid.org/0000-0002-7073-9172
creation date: 2017-09-17T13:52:24Z
comment: Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.

Axiom
annotated source: directly regulated by
annotated property: comment
annotated target: Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

directly negatively regulated by
type: ObjectProperty
sub property of: directly regulated by
inverse of: directly negatively regulates
definition: Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
created by: https://orcid.org/0000-0002-7073-9172
creation date: 2017-09-17T13:52:38Z

Axiom
annotated source: directly negatively regulated by
annotated property: definition
annotated target: Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

directly positively regulated by
type: ObjectProperty
sub property of: directly regulated by
inverse of: directly positively regulates
definition: Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
created by: https://orcid.org/0000-0002-7073-9172
creation date: 2017-09-17T13:52:47Z

Axiom
annotated source: directly positively regulated by
annotated property: definition
annotated target: Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

has effector activity
type: ObjectProperty
sub property of: has component activity
type: FunctionalProperty
definition: A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
created by: https://orcid.org/0000-0002-7073-9172
creation date: 2017-09-22T14:14:36Z
comment: This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations.

Axiom
annotated source: has effector activity
annotated property: definition
annotated target: A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.
database_cross_reference: https://orcid.org/0000-0002-7073-9172

before or simultaneous with
type: ObjectProperty
sub property of: temporally related to
definition editor: David Osumi-Sutherland
alternative term: <=
in_subset: eco subset
comment: Primitive instance level timing relation between events

before
type: ObjectProperty
sub property of: before or simultaneous with
type: TransitiveProperty
definition editor: David Osumi-Sutherland
in_subset: eco subset
comment: t1 before t2 iff:= t1 before_or_simulataneous_with t2 and not (t1 simultaeous_with t2)

ends after
type: ObjectProperty
sub property of: temporally related to
type: TransitiveProperty
definition editor: David Osumi-Sutherland
in_subset: eco subset
comment: X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)

immediately preceded by
type: ObjectProperty
sub property of: preceded_by
inverse of: immediately precedes
property chain axiom: starts with
property chain axiom: ends with
definition editor: David Osumi-Sutherland
alternative term: starts_at_end_of
comment: X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)

immediately precedes
type: ObjectProperty
sub property of: precedes
property chain axiom: ends with
property chain axiom: starts with
definition editor: https://orcid.org/0000-0002-7073-9172
definition editor: David Osumi-Sutherland
alternative term: ends_at_start_of
alternative term: meets
RO_0002575: precedes
in_subset: eco subset
comment: X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)

overlaps
type: ObjectProperty
sub property of: mereotopologically related to
type: SymmetricProperty
property chain axiom: part of
property chain axiom: has part
has curation status: pending final vetting
definition: x overlaps y if and only if there exists some z such that x has part z and z part of y
expand expression to: http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)
temporal interpretation: axiom holds for all times
in_subset: valid for go annotation extension
in_subset: valid for gocam
in_subset: eco subset

Axiom
annotated source: overlaps
annotated property: propertyChainAxiom
annotated target: has part
annotated target: part of
RO_0002582: true

has component
type: ObjectProperty
sub property of: has part
has curation status: pending final vetting
definition: w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.
editor note: The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity.
curator note: For use in recording has_part with a cardinality constraint, because OWL does not permit cardinality constraints to be used in combination with transitive object properties. In situations where you would want to say something like 'has part exactly 5 digit, you would instead use has_component exactly 5 digit.
imported from: ro.owl
temporal interpretation: axiom holds for all times
in_subset: eco subset

regulates
type: ObjectProperty
sub property of: causally upstream of
inverse of: regulated by
type: TransitiveProperty
domain: process
range: process
property chain axiom: has effector activity
property chain axiom: ends with
property chain axiom: directly regulates
definition: p regulates q iff p is causally upstream of q, the execution of p is not constant and varies according to specific conditions, and p influences the rate or magnitude of execution of q due to an effect either on some enabler of q or some enabler of a part of q.
definition editor: https://orcid.org/0000-0001-7476-6306
definition editor: https://orcid.org/0000-0002-3837-8864
definition editor: https://orcid.org/0000-0002-6601-2165
definition source: causal-relations
definition source: GO
curator note: Regulation precludes parthood; the regulatory process may not be within the regulated process.
OBO foundry unique label: regulates (processual)
elucidation: false
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam

negatively regulates
type: ObjectProperty
sub property of: regulates
sub property of: causally upstream of, negative effect
inverse of: negatively regulated by
property chain axiom: ends with
definition: p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q.
definition editor: https://orcid.org/0000-0002-6601-2165
definition source: causal-relations
OBO foundry unique label: negatively regulates (process to process)
RO_0004050: regulates
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam

positively regulates
type: ObjectProperty
sub property of: regulates
sub property of: causally upstream of, positive effect
inverse of: positively regulated by
type: TransitiveProperty
property chain axiom: negatively regulates
property chain axiom: ends with
definition: p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q.
definition editor: https://orcid.org/0000-0002-6601-2165
definition source: causal-relations
OBO foundry unique label: positively regulates (process to process)
RO_0004049: regulates
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam

capable of
type: ObjectProperty
sub property of: capable of part of
domain: independent continuant
range: process
example of usage: mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)
example of usage: osteoclast SubClassOf 'capable of' some 'bone resorption'
definition: A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process.
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: has function realized in
definition source: http://www.ncbi.nlm.nih.gov/pubmed/20123131
definition source: http://www.ncbi.nlm.nih.gov/pubmed/21208450
curator note: For compatibility with BFO, this relation has a shortcut definition in which the expression "capable of some P" expands to "bearer_of (some realized_by only P)".
in_subset: eco subset

capable of part of
type: ObjectProperty
sub property of: functionally related to
sub property of: causal agent in process
property chain axiom: capable of
property chain axiom: part of
definition: c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p.
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: has function in

Axiom
annotated source: capable of part of
annotated property: propertyChainAxiom
annotated target: capable of
annotated target: part of
RO_0002582: true

obsolete actively participates in
type: ObjectProperty
sub property of: ObsoleteProperty
definition: OBSOLETE x actively participates in y if and only if x participates in y and x realizes some active role
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: agent in
term replaced by: process has causal agent
comment: Obsoleted as the inverse property was obsoleted.
deprecated: true

obsolete has active participant
type: ObjectProperty
definition: OBSOLETE x has participant y if and only if x realizes some active role that inheres in y
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: has agent
term replaced by: causal agent in process
deprecated: true

temporally related to
type: ObjectProperty
domain: occurrent
range: occurrent
has curation status: pending final vetting
definition editor: https://orcid.org/0000-0002-6601-2165
definition source: Allen's interval algebra
curator note: Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends.
source: https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit
in_subset: eco subset
comment: A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.

starts
type: ObjectProperty
sub property of: part of
sub property of: temporally related to
inverse of: starts with
has curation status: pending final vetting
definition: inverse of starts with
definition editor: https://orcid.org/0000-0002-6601-2165
definition editor: Chris Mungall
definition source: Allen
in_subset: eco subset

starts with
type: ObjectProperty
sub property of: has part
sub property of: temporally related to
type: TransitiveProperty
example of usage: Every insulin receptor signaling pathway starts with the binding of a ligand to the insulin receptor
has curation status: pending final vetting
definition: x starts with y if and only if x has part y and the time point at which x starts is equivalent to the time point at which y starts. Formally: α(y) = α(x) ∧ ω(y) < ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
definition editor: https://orcid.org/0000-0002-6601-2165
definition editor: Chris Mungall
alternative term: started by
in_subset: eco subset

ends
type: ObjectProperty
sub property of: part of
sub property of: temporally related to
inverse of: ends with
has curation status: pending final vetting
definition: inverse of ends with
definition editor: https://orcid.org/0000-0002-6601-2165
definition editor: Chris Mungall
in_subset: eco subset

ends with
type: ObjectProperty
sub property of: has part
sub property of: temporally related to
type: TransitiveProperty
has curation status: pending final vetting
definition: x ends with y if and only if x has part y and the time point at which x ends is equivalent to the time point at which y ends. Formally: α(y) > α(x) ∧ ω(y) = ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.
definition editor: https://orcid.org/0000-0002-6601-2165
definition editor: Chris Mungall
alternative term: finished by
in_subset: eco subset

has start location
type: ObjectProperty
sub property of: has part that occurs in
domain: process
range: independent continuant
property chain axiom: starts with
property chain axiom: occurs in
has curation status: pending final vetting
definition: x 'has starts location' y if and only if there exists some process z such that x 'starts with' z and z 'occurs in' y
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: starts with process that occurs in
in_subset: eco subset

has end location
type: ObjectProperty
sub property of: has part that occurs in
domain: process
range: independent continuant
property chain axiom: ends with
property chain axiom: occurs in
has curation status: pending final vetting
definition: x 'has end location' y if and only if there exists some process z such that x 'ends with' z and z 'occurs in' y
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: ends with process that occurs in
in_subset: eco subset

has input
type: ObjectProperty
sub property of: has participant
inverse of: input of
domain: process
property chain axiom: starts with
has curation status: pending final vetting
definition: p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: consumes
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
in_subset: eco subset

has output
type: ObjectProperty
sub property of: has participant
inverse of: output of
property chain axiom: ends with
has curation status: pending final vetting
definition: p has output c iff c is a participant in p, c is present at the end of p, and c is not present in the same state at the beginning of p.
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: produces
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam
in_subset: eco subset

acts upstream of
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of
example of usage: A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision.
definition: c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.
in_subset: valid for go gp2term

acts upstream of or within
type: ObjectProperty
sub property of: causal agent in process
property chain axiom: enables
property chain axiom: causally upstream of or within
example of usage: A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway.
definition: c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.
has_related_synonym: affects
in_subset: valid for go gp2term

causally upstream of, positive effect
type: ObjectProperty
sub property of: causally upstream of
sub property of: causally upstream of or within, positive effect
definition: p is causally upstream of, positive effect q iff p is casually upstream of q, and the execution of p is required for the execution of q.
RO_0004049: causally upstream of
creator: https://orcid.org/0000-0002-6601-2165
in_subset: valid for go annotation extension
in_subset: valid for gocam
comment: holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y

causally upstream of, negative effect
type: ObjectProperty
sub property of: causally upstream of
sub property of: causally upstream of or within, negative effect
definition: p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q.
RO_0004050: causally upstream of
creator: https://orcid.org/0000-0002-6601-2165
in_subset: valid for go annotation extension
in_subset: valid for gocam

characteristic of part of
type: ObjectProperty
sub property of: depends on
property chain axiom: characteristic of
property chain axiom: part of
definition: q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w.
editor note: Because part_of is transitive, inheres in is a sub-relation of characteristic of part of
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: inheres in part of
definition source: http://www.ncbi.nlm.nih.gov/pubmed/20064205
temporal interpretation: axiom holds for all times

Axiom
annotated source: characteristic of part of
annotated property: propertyChainAxiom
annotated target: characteristic of
annotated target: part of
RO_0002582: true

mereotopologically related to
type: ObjectProperty
definition: A mereological relationship or a topological relationship
definition editor: https://orcid.org/0000-0002-6601-2165
curator note: Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships
temporal interpretation: axiom holds for all times

enables
type: ObjectProperty
sub property of: capable of
inverse of: enabled by
property chain axiom: has part
property chain axiom: has component activity
example of usage: a particular instances of akt-2 enables some instance of protein kinase activity
definition: c enables p iff c is capable of p and c acts to execute p.
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: catalyzes
alternative term: executes
alternative term: has
alternative term: is catalyzing
alternative term: is executing
curator note: This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized.
in_subset: valid for go gp2term

functionally related to
type: ObjectProperty
definition: A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.
definition editor: https://orcid.org/0000-0002-6601-2165
curator note: This is a grouping relation that collects relations used for the purpose of connecting structure and function

part of structure that is capable of
type: ObjectProperty
sub property of: functionally related to
property chain axiom: part of
property chain axiom: capable of
definition: this relation holds between c and p when c is part of some c', and c' is capable of p.
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: false

Axiom
annotated source: part of structure that is capable of
annotated property: propertyChainAxiom
annotated target: part of
annotated target: capable of
is a defining property chain axiom: true

involved in
type: ObjectProperty
sub property of: participates in
sub property of: involved in or involved in regulation of
property chain axiom: enables
property chain axiom: part of
definition: c involved_in p if and only if c enables some process p', and p' is part of p
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: actively involved in
alternative term: enables part of

enabled by
type: ObjectProperty
sub property of: has participant
sub property of: functionally related to
definition: inverse of enables
definition editor: https://orcid.org/0000-0002-6601-2165
in_subset: valid for gocam

regulated by
type: ObjectProperty
sub property of: causally downstream of or within
type: TransitiveProperty
domain: process
range: process
definition: inverse of regulates
definition editor: https://orcid.org/0000-0002-6601-2165
OBO foundry unique label: regulated by (processual)
in_subset: RO_0002259

negatively regulated by
type: ObjectProperty
sub property of: regulated by
definition: inverse of negatively regulates
definition editor: https://orcid.org/0000-0002-6601-2165
in_subset: RO_0002259

positively regulated by
type: ObjectProperty
sub property of: regulated by
definition: inverse of positively regulates
definition editor: https://orcid.org/0000-0002-6601-2165
in_subset: RO_0002259

member of
type: ObjectProperty
sub property of: part of
inverse of: has member
example of usage: An organism that is a member of a population of organisms
definition: is member of is a mereological relation between a item and a collection.
alternative term: is member of
alternative term: member part of
definition source: SIO
temporal interpretation: axiom holds for all times

has member
type: ObjectProperty
sub property of: has part
type: IrreflexiveProperty
definition: has member is a mereological relation between a collection and an item.
definition source: SIO
temporal interpretation: axiom holds for all times

input of
type: ObjectProperty
sub property of: participates in
sub property of: functionally related to
definition: inverse of has input
definition editor: https://orcid.org/0000-0002-6601-2165
in_subset: RO_0002259
in_subset: eco subset

output of
type: ObjectProperty
sub property of: participates in
sub property of: functionally related to
definition: inverse of has output
definition editor: https://orcid.org/0000-0002-6601-2165
in_subset: RO_0002259
in_subset: eco subset

causally downstream of
type: ObjectProperty
sub property of: preceded_by
sub property of: causally downstream of or within
inverse of: causally upstream of
has curation status: requires discussion
definition: inverse of upstream of
definition editor: https://orcid.org/0000-0002-6601-2165

immediately causally downstream of
type: ObjectProperty
sub property of: immediately preceded by
sub property of: causally downstream of
inverse of: immediately causally upstream of
has curation status: requires discussion
definition editor: https://orcid.org/0000-0002-6601-2165

indirectly positively regulates
type: ObjectProperty
sub property of: positively regulates
sub property of: indirectly regulates
type: TransitiveProperty
property chain axiom: directly positively regulates
property chain axiom: indirectly negatively regulates
definition: p indirectly positively regulates q iff p is indirectly causally upstream of q and p positively regulates q.
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: indirectly activates
RO_0002579: positively regulates

indirectly negatively regulates
type: ObjectProperty
sub property of: negatively regulates
sub property of: indirectly regulates
type: TransitiveProperty
property chain axiom: directly negatively regulates
definition: p indirectly negatively regulates q iff p is indirectly causally upstream of q and p negatively regulates q.
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: indirectly inhibits
RO_0002579: negatively regulates

causally related to
type: ObjectProperty
definition: relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause.
editor note: This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. To define causal relations in an activity-flow type network, we make use of 3 primitives: * Temporal: how do the intervals of the two occurrents relate? * Is the causal relation regulatory? * Is the influence positive or negative? The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified. For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule. For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral. Each of these 3 primitives can be composed to yie…
definition editor: https://orcid.org/0000-0002-6601-2165
curator note: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

Axiom
annotated source: causally related to
annotated property: definition
annotated target: relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause.
database_cross_reference: https://en.wikipedia.org/wiki/Causality

causally upstream of
type: ObjectProperty
sub property of: precedes
sub property of: causally upstream of or within
type: TransitiveProperty
definition: p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q.
definition editor: https://orcid.org/0000-0002-6601-2165
in_subset: valid for go annotation extension
in_subset: valid for gocam

immediately causally upstream of
type: ObjectProperty
sub property of: immediately precedes
sub property of: causally upstream of
definition: p is immediately causally upstream of q iff p is causally upstream of q, and the end of p is coincident with the beginning of q.
definition editor: https://orcid.org/0000-0002-6601-2165
RO_0002575: causally upstream of

causally upstream of or within
type: ObjectProperty
sub property of: causal relation between processes
inverse of: causally downstream of or within
type: TransitiveProperty
property chain axiom: part of
definition: p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q.
editor note: We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: influences (processual)
has_related_synonym: affects

causally downstream of or within
type: ObjectProperty
sub property of: causal relation between processes
type: TransitiveProperty
definition: inverse of causally upstream of or within
definition editor: https://orcid.org/0000-0002-6601-2165
definition source: causal-relations
in_subset: RO_0002259

involved in regulation of
type: ObjectProperty
sub property of: acts upstream of
sub property of: involved in or involved in regulation of
property chain axiom: enables
property chain axiom: regulates
property chain axiom: involved in
definition: c involved in regulation of p if c is involved in some p' and p' regulates some p
definition editor: https://orcid.org/0000-0002-6601-2165

involved in positive regulation of
type: ObjectProperty
sub property of: involved in regulation of
property chain axiom: enables
property chain axiom: positively regulates
property chain axiom: involved in
definition: c involved in regulation of p if c is involved in some p' and p' positively regulates some p
definition editor: https://orcid.org/0000-0002-6601-2165
RO_0004049: involved in regulation of

involved in negative regulation of
type: ObjectProperty
sub property of: involved in regulation of
property chain axiom: enables
property chain axiom: negatively regulates
property chain axiom: involved in
definition: c involved in regulation of p if c is involved in some p' and p' negatively regulates some p
definition editor: https://orcid.org/0000-0002-6601-2165
RO_0004050: involved in regulation of

involved in or involved in regulation of
type: ObjectProperty
sub property of: acts upstream of or within
sub property of: functionally related to
sub property of: causal agent in process
definition: c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p
editor note: OWL does not allow defining object properties via a Union
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: involved in or reguates

is active in
type: ObjectProperty
sub property of: overlaps
sub property of: functionally related to
property chain axiom: enables
property chain axiom: occurs in
example of usage: A protein that enables activity in a cytosol.
definition: c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: executes activity in
has_exact_synonym: enables activity in

Axiom
annotated source: is active in
annotated property: propertyChainAxiom
annotated target: enables
annotated target: occurs in
is a defining property chain axiom: true

Axiom
annotated source: is active in
annotated property: definition
annotated target: c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.
database_cross_reference: https://orcid.org/0000-0002-6601-2165
database_cross_reference: https://orcid.org/0000-0002-7073-9172

interacts with
type: ObjectProperty
type: SymmetricProperty
domain: material entity
range: material entity
definition: A relationship that holds between two entities in which the processes executed by the two entities are causally connected.
editor note: This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact.
editor note: Considering relabeling as 'pairwise interacts with'
definition editor: https://orcid.org/0000-0002-6601-2165
curator note: Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules.
has_exact_synonym: in pairwise interaction with
in_subset: eco subset

molecularly interacts with
type: ObjectProperty
sub property of: interacts with
type: SymmetricProperty
definition: An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other.
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: binds
alternative term: molecularly binds with

phosphorylates
type: ObjectProperty
sub property of: molecularly interacts with
editor note: Axiomatization to GO to be added later
definition editor: https://orcid.org/0000-0002-6601-2165
alternative term: An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y.

directly regulates activity of
type: ObjectProperty
sub property of: molecularly interacts with
sub property of: regulates activity of
domain: material entity
range: material entity
property chain axiom: enables
property chain axiom: regulates
property chain axiom: enabled by
definition: The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B. A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B.
definition editor: https://orcid.org/0000-0002-6601-2165
definition editor: https://orcid.org/0000-0003-4639-4431
has_exact_synonym: molecularly controls

directly negatively regulates activity of
type: ObjectProperty
sub property of: directly regulates activity of
domain: material entity
range: material entity
property chain axiom: enables
property chain axiom: directly negatively regulates
property chain axiom: enabled by
definition: The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.
definition editor: https://orcid.org/0000-0002-6601-2165
definition editor: https://orcid.org/0000-0003-4639-4431
alternative term: directly inhibits
has_exact_synonym: molecularly decreases activity of

directly positively regulates activity of
type: ObjectProperty
sub property of: directly regulates activity of
domain: material entity
range: material entity
property chain axiom: enables
property chain axiom: directly positively regulates
property chain axiom: enabled by
definition: The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.
definition editor: https://orcid.org/0000-0002-6601-2165
definition editor: https://orcid.org/0000-0003-4639-4431
alternative term: directly activates
has_exact_synonym: molecularly increases activity of

helper property (not for use in curation)
type: ObjectProperty
definition editor: https://orcid.org/0000-0002-6601-2165
curator note: This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning.

has part that occurs in
type: ObjectProperty
domain: occurrent
range: independent continuant
property chain axiom: has part
property chain axiom: occurs in
definition: p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.
definition editor: https://orcid.org/0000-0002-6601-2165
in_subset: eco subset

Axiom
annotated source: has part that occurs in
annotated property: propertyChainAxiom
annotated target: has part
annotated target: occurs in
is a defining property chain axiom: true

is kinase activity
type: ObjectProperty
sub property of: molecular interaction relation helper property
definition editor: https://orcid.org/0000-0002-6601-2165

causal agent in process
type: ObjectProperty
sub property of: causal relation between material entity and a process
inverse of: process has causal agent
definition: A relationship between a material entity and a process where the material entity has some causal role that influences the process
definition source: causal-relations

causal relation between processes
type: ObjectProperty
sub property of: causally related to
domain: occurrent
range: occurrent
definition: p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q.
definition editor: https://orcid.org/0000-0002-6601-2165
definition source: causal-relations
curator note: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

depends on
type: ObjectProperty
definition editor: https://orcid.org/0000-0002-6601-2165

causal relation between entities
type: ObjectProperty
sub property of: causally related to
domain: continuant
range: continuant
editor note: The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch
definition editor: https://orcid.org/0000-0002-6601-2165
definition source: causal-relations
curator note: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.

causally influenced by
type: ObjectProperty
sub property of: causal relation between entities
inverse of: causally influences
definition editor: https://orcid.org/0000-0002-6601-2165
definition source: causal-relations
OBO foundry unique label: causally influenced by (entity-centric)

interaction relation helper property
type: ObjectProperty
sub property of: helper property (not for use in curation)
definition editor: https://orcid.org/0000-0002-6601-2165

molecular interaction relation helper property
type: ObjectProperty
sub property of: interaction relation helper property
definition editor: https://orcid.org/0000-0002-6601-2165

causally influences
type: ObjectProperty
sub property of: causal relation between entities
domain: continuant
range: continuant
property chain axiom: enables
property chain axiom: causally upstream of
property chain axiom: has input
property chain axiom: enabled by
definition: The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size).
definition editor: https://orcid.org/0000-0002-6601-2165
definition editor: https://orcid.org/0000-0003-4639-4431
definition source: causal-relations
OBO foundry unique label: causally influences (entity-centric)

system
type: ObjectProperty
type: Class
subclass of: material entity
definition: A material entity consisting of multiple components that are causally integrated.
editor note: May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43
definition editor: https://orcid.org/0000-0002-6601-2165
definition source: http://www.jbiomedsem.com/content/4/1/43

directly regulates
type: ObjectProperty
sub property of: regulates
sub property of: immediately causally upstream of
definition: p directly regulates q iff p is immediately causally upstream of q and p regulates q.
definition editor: https://orcid.org/0000-0002-6601-2165
definition source: causal-relations
OBO foundry unique label: directly regulates (processual)
RO_0002575: regulates
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam

has part structure that is capable of
type: ObjectProperty
sub property of: functionally related to
sub property of: causal relation between material entity and a process
property chain axiom: has part
property chain axiom: capable of
example of usage: gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'
definition: s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p
definition editor: https://orcid.org/0000-0002-6601-2165

causal relation between material entity and a process
type: ObjectProperty
sub property of: causally related to
domain: material entity
range: process
definition: A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.
editor note: Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.
definition editor: https://orcid.org/0000-0002-6601-2165
definition source: causal-relations

capable of regulating
type: ObjectProperty
sub property of: causal agent in process
property chain axiom: capable of
property chain axiom: regulates
example of usage: pyrethroid -> growth
definition: Holds between c and p if and only if c is capable of some activity a, and a regulates p.
definition source: causal-relations

capable of negatively regulating
type: ObjectProperty
sub property of: capable of regulating
property chain axiom: capable of
property chain axiom: negatively regulates
definition: Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.
definition source: causal-relations

capable of positively regulating
type: ObjectProperty
sub property of: capable of regulating
property chain axiom: capable of
property chain axiom: positively regulates
example of usage: renin -> arteriolar smooth muscle contraction
definition: Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.
definition source: causal-relations

process has causal agent
type: ObjectProperty
sub property of: causally related to
definition: Inverse of 'causal agent in process'
definition source: causal-relations

directly positively regulates
type: ObjectProperty
sub property of: positively regulates
sub property of: directly regulates
definition: p directly positively regulates q iff p is immediately causally upstream of q, and p positively regulates q.
definition source: causal-relations
OBO foundry unique label: directly positively regulates (process to process)
RO_0004049: directly regulates
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam

directly negatively regulates
type: ObjectProperty
sub property of: negatively regulates
sub property of: directly regulates
definition: p directly negatively regulates q iff p is immediately causally upstream of q, and p negatively regulates q.
definition source: causal-relations
OBO foundry unique label: directly negatively regulates (process to process)
RO_0004050: directly regulates
in_subset: valid for go annotation extension
in_subset: valid for go ontology
in_subset: valid for gocam

produces
type: ObjectProperty
inverse of: produced by
domain: material entity
range: material entity
property chain axiom:
  inverse of: occurs in
property chain axiom: has output
has curation status: pending final vetting
definition: a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix.
definition editor: https://orcid.org/0000-0001-9114-8737
in_subset: eco subset
comment: Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue.

produced by
type: ObjectProperty
domain: material entity
range: material entity
has curation status: pending final vetting
definition: a produced_by b iff some process that occurs_in b has_output a.
definition editor: https://orcid.org/0000-0001-9114-8737
in_subset: eco subset

realized in response to stimulus
type: ObjectProperty
sub property of: causally related to
domain: realizable entity
range: material entity
property chain axiom: realized in response to
property chain axiom: has input
definition: A relationship between a realizable entity R (e.g. function or disposition) and a material entity M where R is realized in response to a process that has an input stimulus of M.
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2017-12-26T19:45:49Z

enables subfunction
type: ObjectProperty
sub property of: functionally related to
property chain axiom: enables
property chain axiom: has part
definition: Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P.
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-01-25T23:20:13Z

acts upstream of or within, positive effect
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of or within, positive effect
RO_0004049: acts upstream of or within
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-01-26T23:49:30Z
in_subset: valid for go gp2term

acts upstream of or within, negative effect
type: ObjectProperty
sub property of: acts upstream of or within
property chain axiom: enables
property chain axiom: causally upstream of or within, negative effect
RO_0004050: acts upstream of or within
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-01-26T23:49:51Z
in_subset: valid for go gp2term

acts upstream of, positive effect
type: ObjectProperty
sub property of: acts upstream of
sub property of: acts upstream of or within, positive effect
property chain axiom: enables
property chain axiom: causally upstream of, positive effect
definition: c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive
RO_0004049: acts upstream of
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-01-26T23:53:14Z
in_subset: valid for go gp2term

acts upstream of, negative effect
type: ObjectProperty
sub property of: acts upstream of
sub property of: acts upstream of or within, negative effect
property chain axiom: enables
property chain axiom: causally upstream of, negative effect
definition: c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative
RO_0004050: acts upstream of
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-01-26T23:53:22Z
in_subset: valid for go gp2term

causally upstream of or within, negative effect
type: ObjectProperty
sub property of: causally upstream of or within
RO_0004050: causally upstream of or within
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-03-13T23:55:05Z

causally upstream of or within, positive effect
type: ObjectProperty
sub property of: causally upstream of or within
RO_0004049: causally upstream of or within
created by: https://orcid.org/0000-0002-6601-2165
creation date: 2018-03-13T23:55:19Z

DEPRECATED inheres in
type: ObjectProperty
comment: DEPRECATED This relation is similar to but different in important respects to the characteristic-of relation. See comments on that relation for more information.
deprecated: true

DEPRECATED bearer of
type: ObjectProperty
deprecated: true

realized in response to
type: ObjectProperty
sub property of: causally related to
domain: realizable entity
range: process
property chain axiom: realized in
property chain axiom: causally downstream of
example of usage: A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions.
example of usage: An inflammatory disease that is realized in response to an inflammatory process occurring in the gut (which is itself the realization of a process realized in response to harmful stimuli in the mucosal lining of th gut)
example of usage: Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph.
definition: r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r.
contributor: https://orcid.org/0000-0001-6996-0040
contributor: https://orcid.org/0000-0002-6601-2165
contributor: https://orcid.org/0000-0002-7073-9172
contributor: https://orcid.org/0000-0002-8461-9745
has_exact_synonym: triggered by process

Axiom
annotated source: realized in response to
annotated property: has_exact_synonym
annotated target: triggered by process
database_cross_reference: https://orcid.org/0000-0002-6601-2165

generically depends on
type: ObjectProperty
inverse of: is carrier of
domain: generically dependent continuant
range: independent continuant
property chain axiom: characteristic of
property chain axiom: is concretized as
example of usage: Genetic information generically depend on molecules of DNA.
example of usage: The novel *War and Peace* generically depends on this copy of the novel.
example of usage: The pattern shared by chess boards generically depends on any chess board.
example of usage: The score of a symphony g-depends on a copy of the score.
example of usage: This pdf file generically depends on this server.
definition: A generically dependent continuant *b* generically depends on an independent continuant *c* at time *t* means: there inheres in *c* a specifically deendent continuant which concretizes *b* at *t*.
definition source: [072-ISO]
has_exact_synonym: g-depends on

is carrier of
type: ObjectProperty
domain: independent continuant
range: generically dependent continuant
property chain axiom: concretizes
property chain axiom: bearer of
example of usage: Molecules of DNA are carriers of genetic information.
example of usage: This copy of *War and Peace* is carrier of the novel written by Tolstoy.
example of usage: This hard drive is carrier of these data items.
definition: *b* is carrier of *c* at time *t* if and only if *c* *g-depends on* *b* at *t*
definition source: [072-ISO]

regulates activity of
type: ObjectProperty
sub property of: causally influences
domain: material entity
range: material entity
definition: The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B.
definition editor: https://orcid.org/0000-0003-4639-4431

indirectly causally upstream of
type: ObjectProperty
sub property of: causally upstream of
definition: p is indirectly causally upstream of q iff p is causally upstream of q and there exists some process r such that p is causally upstream of r and r is causally upstream of q.
created by: https://orcid.org/0000-0003-1813-6857
creation date: 2022-09-26T06:07:17Z

indirectly regulates
type: ObjectProperty
sub property of: regulates
sub property of: indirectly causally upstream of
definition: p indirectly regulates q iff p is indirectly causally upstream of q and p regulates q.
created by: https://orcid.org/0000-0003-1813-6857
creation date: 2022-09-26T06:08:01Z

device utilizes material
type: ObjectProperty
property chain axiom: capable of
property chain axiom: has input
example of usage: A diagnostic testing device utilizes a specimen.
definition: X device utilizes material Y means X and Y are material entities, and X is capable of some process P that has input Y.
curator note: A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input.
curator note: See github ticket https://github.com/oborel/obo-relations/issues/497
contributor: https://orcid.org/0000-0001-9625-1899
contributor: https://orcid.org/0000-0003-2620-0345
creation date: 2021-11-08T12:00:00Z
has_broad_synonym: utilizes

regulates characteristic
type: ObjectProperty
sub property of: causally related to
domain: process
range: quality
property chain axiom: regulates
definition: A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C.
contributor: https://orcid.org/0000-0002-8688-6599

positively regulates characteristic
type: ObjectProperty
sub property of: regulates characteristic
property chain axiom: positively regulates
definition: A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C.
contributor: https://orcid.org/0000-0002-8688-6599

negatively regulates characteristic
type: ObjectProperty
sub property of: regulates characteristic
property chain axiom: negatively regulates
property chain axiom: positively regulates characteristic
property chain axiom: positively regulates
definition: A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C.
contributor: https://orcid.org/0000-0002-8688-6599

is about vaccination procedure
type: ObjectProperty
sub property of: is about
range: vaccination
definition: a relation between a question or a questionnaire that is specifically designed for a certain vaccination procedure.
comment: It is not clear if all questionnaires use the same question for a certain vaccination. If it is true, this relation is class level relation. If not, it is instance level relation. However, in a questionnaire and vaccination procedure, this is always true.

asking vaccination patient
type: ObjectProperty
sub property of: is about
domain: Class
  union of: question textual entity
  union of: vaccination screening questionnaire
range: vaccination patient

documented by
type: ObjectProperty
definition: an object property that represents a relation between a document and an entity that writes, maintains and releases the document.
definition editor: YH,YL, JZ

screening questionnaire is filled by
type: ObjectProperty
sub property of: is about
domain: vaccination screening questionnaire
range: Class
  union of: legal representative of minor vaccination patient
  union of: Class
    intersection of: vaccination patient
    intersection of: Class
      complement of: minor vaccination patient

used in geographic location
type: ObjectProperty
sub property of: is about

has gender
type: ObjectProperty
sub property of: has quality

has vaccine contraindication
type: ObjectProperty
definition: has_vaccine_contraindication is a relation that specifies contraindication of a vaccine.
editor note: This relation may be replaced by has_vaccine_allergen. We need to determine if any vaccine contraindicator is not a vaccine allergen.
definition editor: YH
imported from: vo.owl

has vaccine allergen
type: ObjectProperty
sub property of: topObjectProperty
domain: vaccine
definition: a object property that specifies a relation between a vaccine and a vaccine allergen
definition editor: YH
imported from: vo.owl

vaccinated in route
type: ObjectProperty
domain: vaccine
range: route of administration
imported from: vo.owl
comment: an object property that specifies a relation between a vaccine and a vaccinate route

is_distributed_by
type: ObjectProperty
definition: is_distributed_by is a relation that specifies a company that distributes a product (e.g., vaccine). The company is very likely not the manufacturer of the product.
definition editor: YH, ZX
imported from: vo.owl

vaccine immunization against disase
type: ObjectProperty
domain: vaccine
definition editor: Asiyah Yu Lin
definition editor: Oliver He
imported from: vo.owl

vaccine immunization for host
type: ObjectProperty
domain: vaccine
range: organism
definition editor: YL
definition editor: Yongqun He
imported from: vo.owl

vaccine immunization against microbe
type: ObjectProperty
definition editor: Yongqun He
imported from: vo.owl

bearer_of
type: ObjectProperty
editor preferred term: bearer_of
definition: A relation between an entity and a dependent continuant; the reciprocal relation of inheres_in
imported from: vo.owl
imported from: http://purl.org/obo/owl/ro_proposed

inheres_in
type: ObjectProperty
sub property of: inheres_in_part_of
type: FunctionalProperty
domain: specifically dependent continuant
range: independent continuant
editor preferred term: inheres_in
definition: A relation between a dependent continuant D and an entity E. D inheres_in E iff: given any d that instantiates D at t, there exists some e that instantiates E at t and d *inheres_in* e at t. Here *inheres_in* is the primitive instance level relation.
imported from: vo.owl
imported from: http://purl.org/obo/owl/ro_proposed

inheres_in_part_of
type: ObjectProperty
editor preferred term: inheres_in_part_of
imported from: vo.owl
imported from: http://purl.org/obo/owl/ro_proposed

role_of
type: ObjectProperty
sub property of: inheres_in
editor preferred term: role_of
definition: A relation between a role R and an entity E. R role_of E iff: R inheres_in E and R is a role
imported from: vo.owl
imported from: http://purl.org/obo/owl/ro_proposed

unfolds_in
type: ObjectProperty
editor preferred term: unfolds_in
definition: P unfolds_in C : the execution of P is spatially contained by C. forall pP, forall c' partipates_in p, c' located_in C at t, for some t in P
imported from: vo.owl
imported from: http://purl.org/obo/owl/ro_proposed

is reported by
type: ObjectProperty

has vaccine adverse signs
type: ObjectProperty
sub property of: has specific dependent at some time
domain: vaccine adverse event
range: symptom

has symptoms
type: ObjectProperty

is documented by
type: ObjectProperty

placed on
type: ObjectProperty

has characteristic
type: ObjectProperty
sub property of: bearer of
definition: Inverse of characteristic_of
id: bearer of

has measurement value
type: DatatypeProperty
type: FunctionalProperty
domain: scalar measurement datum
range: double

has x coordinate value
type: DatatypeProperty
type: FunctionalProperty
domain: cartesian spatial coordinate datum
range: float

has z coordinate value
type: DatatypeProperty
type: FunctionalProperty
domain: cartesian spatial coordinate datum
range: float

has y coordinate value
type: DatatypeProperty
type: FunctionalProperty
domain: cartesian spatial coordinate datum
range: float

date
type: DatatypeProperty
domain: one-dimensional temporal region
range: string
comment: The only valid string values for this property are ISO 8601 formatted date strings in extended form. It is allowable specify only the year, e.g. '2016' but only when the 1D temporal region references the entire year. Ditto for month, e.g. 2016-04 is acceptable but only if it references the entire interval of that month.

time of day
type: DatatypeProperty
domain: Class
  union of: one-dimensional temporal region
  union of: zero-dimensional temporal region
range: string
alternative term: time

hasAge
type: DatatypeProperty

has vaccination schedule value
type: DatatypeProperty
domain: vaccination schedule

software development
type: Class
equivalent class: Class
  intersection of: planned process
  intersection of: Restriction
    on property: has_specified_output
    some values from: Class
      union of: software
      union of: source code module
subclass of: planned process
subclass of: Restriction
  on property: has_specified_output
  some values from: Class
    union of: software
    union of: source code module
definition: A planned process that has specified output a software product and that involves the creation of source code.
definition editor: Mathias Brochhausen
definition editor: William R. Hogan
definition source: http://en.wikipedia.org/wiki/Software_development
elucidation: A planned process resulting in a software product involving the creation of source code.

count
type: Class
equivalent class: Class
  intersection of: data item
  intersection of: Restriction
    on property: is specified output of
    some values from: counting
subclass of: measurement datum
subclass of: Restriction
  on property: is specified output of
  some values from: counting
definition: A measurement datum that is the output of counting.
definition editor: Mathias Brochhausen
elucidation: A measurement datum that is the output of counting.

counting
type: Class
equivalent class: Class
  intersection of: planned process
  intersection of: Restriction
    on property: has_specified_output
    some values from: count
subclass of: planned process
subclass of: Restriction
  on property: has_specified_output
  some values from: count
definition: The planned process of finding the number of elements in a finite set of objects.
definition editor: Mathias Brochhausen
definition source: http://en.wikipedia.org/wiki/Counting
elucidation: The planned process of finding the number of elements in a finite set of objects.

geographical movement of organism
type: Class
subclass of: behavior
definition: A behavior of one or more organisms that is characterized by the displacement from one geographic region to some target geographic region, and is the realization of either a biological function or (a concretization of) an objective specification.
definition editor: Matthew Diller
definition editor: William R. Hogan
elucidation: A behavior of one or more organisms that is characterized by the displacement from one geographic region to some target geographic region, and is the realization of either a biological function or (a concretization of) an objective specification.

source code repository
type: Class
subclass of: document
subclass of: Restriction
  on property: has part
  some values from: source code module
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: data item
    intersection of: Restriction
      on property: is about
      some values from: source code module
editor preferred term: software source code version control repository
definition: A document that comprises at least one source code module and provenance data about who contributed the set of files making up the module(s), and optionally comprises also multiple versions of files with detailed change history about who committed files and when, a license for the software, readme files, documentation, executables, etc.
definition editor: William R. Hogan
comment: Refers to the stuff that lives on GitHub, not to GitHub or the git software on which it is based

compiling software
type: Class
subclass of: software development
subclass of: Class
  intersection of: Restriction
    on property: has_specified_input
    some values from: Class
      union of: software
      union of: source code module
  intersection of: Restriction
    on property: has_specified_output
    some values from: software
editor preferred term: process of compiling software
definition: A planned process that converts human-written or curated software into a machine-executable or interpretable set of instructions.
definition editor: William R. Hogan
comment: It's compiling "software" (scare quotes) and not "source code" because you can compile Java bytecode to machine code, and Java bytecode is not technically "source code". Compiling source code would be a subclass of this class (as would compiling Java bytecode, etc.).
comment: Source code can be automatically generated to some extent, but we're assuming humans still curate it minimally. Also, in the case of Java and its JVM, it's machine interpretable instructions, not directly executable. Ditto for other languages with intermediate form like Java byte code.

human travel
type: Class
subclass of: geographical movement of organism
definition: A geographical migration of an organism belonging to the species Homo sapiens.
definition editor: Matthew Diller
definition editor: William R. Hogan

dataset creating
type: Class
equivalent class: Class
  intersection of: planned process
  intersection of: Restriction
    on property: has_specified_output
    some values from: data set
subclass of: planned process
subclass of: Restriction
  on property: has_specified_output
  some values from: data set
editor preferred term: creating a data set
definition: A planned process that has a data set as its specified output.
definition editor: William R. Hogan
alternative term: data set creation
alternative term: dataset creation

entity
type: Class
subclass of: Thing
subclass of: Restriction
  on property: exists at
  some values from: temporal region
BFO OWL specification label: entity
BFO CLIF specification label: Entity
editor preferred term: entity
example of usage: Julius Caesar
example of usage: Verdi’s Requiem
example of usage: the Second World War
example of usage: your body mass index
editor note: BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81
editor note: Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
imported from: BFO
imported from: bfo.owl
imported from: ico.owl
imported from: oae.owl
imported from: obi.owl
imported from: ogg.owl
imported from: ogms.owl
imported from: vo.owl
elucidation: An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])

Axiom
annotated source: entity
annotated property: editor note
annotated target: Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000004
comment: per discussion with Barry Smith

Axiom
annotated source: entity
annotated property: elucidation
annotated target: An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/001-001

continuant
type: Class
subclass of: entity
subclass of: Restriction
  on property: part of
  all values from: continuant
disjoint with: occurrent
disjoint with: Restriction
  on property: part of
  some values from: occurrent
BFO OWL specification label: continuant
BFO CLIF specification label: Continuant
editor preferred term: continuant
example of usage: a heart
example of usage: a person
example of usage: a symphony orchestra
example of usage: the color of a tomato
example of usage: the disposition of blood to coagulate
example of usage: the lawn and atmosphere in front of our building
example of usage: the mass of a cloud
definition: An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts.
editor note: BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240
editor note: Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
alternative term: endurant
imported from: BFO
imported from: bfo.owl
imported from: ico.owl
imported from: oae.owl
imported from: obi.owl
imported from: ogg.owl
imported from: ro.owl
imported from: vo.owl
elucidation: A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
has associated axiom(nl): if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
has associated axiom(nl): if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
has associated axiom(nl): if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
has associated axiom(fol): (forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
has associated axiom(fol): (forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
has associated axiom(fol): (forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
has associated axiom(fol): (forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]

Axiom
annotated source: continuant
annotated property: editor note
annotated target: Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000007

Axiom
annotated source: continuant
annotated property: elucidation
annotated target: A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/008-002

Axiom
annotated source: continuant
annotated property: has associated axiom(nl)
annotated target: if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/126-001

Axiom
annotated source: continuant
annotated property: has associated axiom(nl)
annotated target: if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/009-002

Axiom
annotated source: continuant
annotated property: has associated axiom(nl)
annotated target: if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/011-002

Axiom
annotated source: continuant
annotated property: has associated axiom(fol)
annotated target: (forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/009-002

Axiom
annotated source: continuant
annotated property: has associated axiom(fol)
annotated target: (forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/126-001

Axiom
annotated source: continuant
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/008-002

Axiom
annotated source: continuant
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/011-002

occurrent
type: Class
subclass of: entity
subclass of: Restriction
  on property: part of
  all values from: occurrent
disjoint with: Restriction
  on property: part of
  some values from: continuant
BFO OWL specification label: occurrent
BFO CLIF specification label: Occurrent
editor preferred term: occurrent
definition: An entity that has temporal parts and that happens, unfolds or develops through time.
editor note: BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region
editor note: BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players.
editor note: Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
editor note: Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
imported from: BFO
imported from: ico.owl
imported from: oae.owl
imported from: obi.owl
imported from: ogg.owl
imported from: vo.owl
elucidation: An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
has associated axiom(nl): Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
has associated axiom(nl): b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
has associated axiom(fol): (forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
has associated axiom(fol): (forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]

Axiom
annotated source: occurrent
annotated property: editor note
annotated target: Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process.
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000006
comment: per discussion with Barry Smith

Axiom
annotated source: occurrent
annotated property: editor note
annotated target: Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame.
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000012

Axiom
annotated source: occurrent
annotated property: elucidation
annotated target: An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/077-002

Axiom
annotated source: occurrent
annotated property: has associated axiom(nl)
annotated target: Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/108-001

Axiom
annotated source: occurrent
annotated property: has associated axiom(nl)
annotated target: b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/079-001

Axiom
annotated source: occurrent
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/108-001

Axiom
annotated source: occurrent
annotated property: has associated axiom(fol)
annotated target: (forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/079-001

independent continuant
type: Class
subclass of: continuant
subclass of: Restriction
  on property: occupies spatial region at some time
  some values from: spatial region
subclass of: Restriction
  on property: part of
  all values from: independent continuant
subclass of: Restriction
  on property: specifically depends on at some time
  all values from: Nothing
subclass of: Restriction
  on property: part of continuant at some time
  all values from: Class
    complement of: Class
      union of: specifically dependent continuant
      union of: generically dependent continuant
subclass of: Restriction
  on property: part of continuant at all times that whole exists
  all values from: Class
    complement of: Class
      union of: specifically dependent continuant
      union of: generically dependent continuant
disjoint with: specifically dependent continuant
disjoint with: generically dependent continuant
BFO OWL specification label: ic
BFO CLIF specification label: IndependentContinuant
editor preferred term: independent continuant
example of usage: a chair
example of usage: a heart
example of usage: a leg
example of usage: a molecule
example of usage: a person
example of usage: a spatial region
example of usage: a symphony orchestra
example of usage: an atom
example of usage: an orchestra.
example of usage: an organism
example of usage: the bottom right portion of a human torso
example of usage: the interior of your mouth
example of usage: the lawn and atmosphere in front of our building
definition: A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
definition: b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
alternative term: substantial entity
imported from: BFO
imported from: bfo.owl
imported from: ico.owl
imported from: obi.owl
imported from: ogg.owl
imported from: vo.owl
has associated axiom(nl): For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
has associated axiom(nl): For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
has associated axiom(fol): (forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
has associated axiom(fol): (forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
has associated axiom(fol): (iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]
comment: A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.

Axiom
annotated source: independent continuant
annotated property: definition
annotated target: b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/017-002

Axiom
annotated source: independent continuant
annotated property: has associated axiom(nl)
annotated target: For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/134-001

Axiom
annotated source: independent continuant
annotated property: has associated axiom(nl)
annotated target: For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/018-002

Axiom
annotated source: independent continuant
annotated property: has associated axiom(fol)
annotated target: (forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/134-001

Axiom
annotated source: independent continuant
annotated property: has associated axiom(fol)
annotated target: (forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/018-002

Axiom
annotated source: independent continuant
annotated property: has associated axiom(fol)
annotated target: (iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/017-002

spatial region
type: Class
subclass of: immaterial entity
subclass of: Restriction
  on property: part of continuant at some time
  all values from: spatial region
subclass of: Restriction
  on property: has continuant part at some time
  all values from: spatial region
subclass of: Restriction
  on property: part of continuant at all times that whole exists
  all values from: spatial region
subclass of: Restriction
  on property: has continuant part at all times that part exists
  all values from: spatial region
subclass of: Restriction
  on property: occupies spatial region at some time
  has self: true
subclass of: Restriction
  on property: has spatial occupant at some time
  has self: true
disjoint with: site
disjoint with: continuant fiat boundary
BFO OWL specification label: s-region
BFO CLIF specification label: SpatialRegion
editor note: BFO 2 Reference: Spatial regions do not participate in processes.
editor note: Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional.
imported from: ogg.owl
imported from: vo.owl
elucidation: A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])
has associated axiom(nl): All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])
has associated axiom(fol): (forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001]
has associated axiom(fol): (forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001]

Axiom
annotated source: spatial region
annotated property: editor note
annotated target: Spatial region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the union of a spatial point and a spatial line that doesn't overlap the point, or two spatial lines that intersect at a single point. In both cases the resultant spatial region is neither 0-dimensional, 1-dimensional, 2-dimensional, or 3-dimensional.
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000002
comment: per discussion with Barry Smith

Axiom
annotated source: spatial region
annotated property: elucidation
annotated target: A spatial region is a continuant entity that is a continuant_part_of spaceR as defined relative to some frame R. (axiom label in BFO2 Reference: [035-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/035-001

Axiom
annotated source: spatial region
annotated property: has associated axiom(nl)
annotated target: All continuant parts of spatial regions are spatial regions. (axiom label in BFO2 Reference: [036-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/036-001

Axiom
annotated source: spatial region
annotated property: has associated axiom(fol)
annotated target: (forall (x y t) (if (and (SpatialRegion x) (continuantPartOfAt y x t)) (SpatialRegion y))) // axiom label in BFO2 CLIF: [036-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/036-001

Axiom
annotated source: spatial region
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (SpatialRegion x) (Continuant x))) // axiom label in BFO2 CLIF: [035-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/035-001

temporal region
type: Class
subclass of: occurrent
subclass of: Restriction
  on property: has occurrent part
  all values from: temporal region
subclass of: Restriction
  on property: part of occurrent
  all values from: temporal region
subclass of: Restriction
  on property: occupies temporal region
  has self: true
subclass of: Restriction
  on property: has temporal occupant
  has self: true
disjoint with: spatiotemporal region
disjoint with: process
disjoint with: process boundary
BFO OWL specification label: t-region
BFO CLIF specification label: TemporalRegion
editor note: Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional
imported from: ogg.owl
imported from: vo.owl
elucidation: A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001])
has associated axiom(nl): All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001])
has associated axiom(nl): Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])
has associated axiom(fol): (forall (r) (if (TemporalRegion r) (occupiesTemporalRegion r r))) // axiom label in BFO2 CLIF: [119-002]
has associated axiom(fol): (forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001]
has associated axiom(fol): (forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001]

Axiom
annotated source: temporal region
annotated property: editor note
annotated target: Temporal region doesn't have a closure axiom because the subclasses don't exhaust all possibilites. An example would be the mereological sum of a temporal instant and a temporal interval that doesn't overlap the instant. In this case the resultant temporal region is neither 0-dimensional nor 1-dimensional
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000003
comment: per discussion with Barry Smith

Axiom
annotated source: temporal region
annotated property: elucidation
annotated target: A temporal region is an occurrent entity that is part of time as defined relative to some reference frame. (axiom label in BFO2 Reference: [100-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/100-001

Axiom
annotated source: temporal region
annotated property: has associated axiom(nl)
annotated target: All parts of temporal regions are temporal regions. (axiom label in BFO2 Reference: [101-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/101-001

Axiom
annotated source: temporal region
annotated property: has associated axiom(nl)
annotated target: Every temporal region t is such that t occupies_temporal_region t. (axiom label in BFO2 Reference: [119-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/119-002

Axiom
annotated source: temporal region
annotated property: has associated axiom(fol)
annotated target: (forall (r) (if (TemporalRegion r) (occupiesTemporalRegion r r))) // axiom label in BFO2 CLIF: [119-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/119-002

Axiom
annotated source: temporal region
annotated property: has associated axiom(fol)
annotated target: (forall (x y) (if (and (TemporalRegion x) (occurrentPartOf y x)) (TemporalRegion y))) // axiom label in BFO2 CLIF: [101-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/101-001

Axiom
annotated source: temporal region
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (TemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [100-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/100-001

two-dimensional spatial region
type: Class
subclass of: spatial region
disjoint with: three-dimensional spatial region
BFO OWL specification label: 2d-s-region
BFO CLIF specification label: TwoDimensionalSpatialRegion
example of usage: an infinitely thin plane in space.
example of usage: the surface of a sphere-shaped part of space
elucidation: A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001])
has associated axiom(fol): (forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001]

Axiom
annotated source: two-dimensional spatial region
annotated property: elucidation
annotated target: A two-dimensional spatial region is a spatial region that is of two dimensions. (axiom label in BFO2 Reference: [039-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/039-001

Axiom
annotated source: two-dimensional spatial region
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (TwoDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [039-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/039-001

spatiotemporal region
type: Class
subclass of: occurrent
subclass of: Restriction
  on property: projects onto spatial region at some time
  some values from: spatial region
subclass of: Restriction
  on property: projects onto temporal region
  some values from: temporal region
subclass of: Restriction
  on property: has occurrent part
  all values from: spatiotemporal region
subclass of: Restriction
  on property: part of occurrent
  all values from: spatiotemporal region
subclass of: Restriction
  on property: has spatiotemporal occupant
  has self: true
subclass of: Restriction
  on property: occupies spatiotemporal region
  has self: true
BFO OWL specification label: st-region
BFO CLIF specification label: SpatiotemporalRegion
example of usage: the spatiotemporal region occupied by a human life
example of usage: the spatiotemporal region occupied by a process of cellular meiosis.
example of usage: the spatiotemporal region occupied by the development of a cancer tumor
imported from: ogg.owl
imported from: vo.owl
elucidation: A spatiotemporal region is an occurrent entity that is part of spacetime. (axiom label in BFO2 Reference: [095-001])
has associated axiom(nl): All parts of spatiotemporal regions are spatiotemporal regions. (axiom label in BFO2 Reference: [096-001])
has associated axiom(nl): Each spatiotemporal region at any time t projects_onto some spatial region at t. (axiom label in BFO2 Reference: [099-001])
has associated axiom(nl): Each spatiotemporal region projects_onto some temporal region. (axiom label in BFO2 Reference: [098-001])
has associated axiom(nl): Every spatiotemporal region occupies_spatiotemporal_region itself.
has associated axiom(nl): Every spatiotemporal region s is such that s occupies_spatiotemporal_region s. (axiom label in BFO2 Reference: [107-002])
has associated axiom(fol): (forall (r) (if (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion r r))) // axiom label in BFO2 CLIF: [107-002]
has associated axiom(fol): (forall (x t) (if (SpatioTemporalRegion x) (exists (y) (and (SpatialRegion y) (spatiallyProjectsOntoAt x y t))))) // axiom label in BFO2 CLIF: [099-001]
has associated axiom(fol): (forall (x y) (if (and (SpatioTemporalRegion x) (occurrentPartOf y x)) (SpatioTemporalRegion y))) // axiom label in BFO2 CLIF: [096-001]
has associated axiom(fol): (forall (x) (if (SpatioTemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [095-001]
has associated axiom(fol): (forall (x) (if (SpatioTemporalRegion x) (exists (y) (and (TemporalRegion y) (temporallyProjectsOnto x y))))) // axiom label in BFO2 CLIF: [098-001]

Axiom
annotated source: spatiotemporal region
annotated property: elucidation
annotated target: A spatiotemporal region is an occurrent entity that is part of spacetime. (axiom label in BFO2 Reference: [095-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/095-001

Axiom
annotated source: spatiotemporal region
annotated property: has associated axiom(nl)
annotated target: All parts of spatiotemporal regions are spatiotemporal regions. (axiom label in BFO2 Reference: [096-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/096-001

Axiom
annotated source: spatiotemporal region
annotated property: has associated axiom(nl)
annotated target: Each spatiotemporal region at any time t projects_onto some spatial region at t. (axiom label in BFO2 Reference: [099-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/099-001

Axiom
annotated source: spatiotemporal region
annotated property: has associated axiom(nl)
annotated target: Each spatiotemporal region projects_onto some temporal region. (axiom label in BFO2 Reference: [098-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/098-001

Axiom
annotated source: spatiotemporal region
annotated property: has associated axiom(nl)
annotated target: Every spatiotemporal region s is such that s occupies_spatiotemporal_region s. (axiom label in BFO2 Reference: [107-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/107-002

Axiom
annotated source: spatiotemporal region
annotated property: has associated axiom(fol)
annotated target: (forall (r) (if (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion r r))) // axiom label in BFO2 CLIF: [107-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/107-002

Axiom
annotated source: spatiotemporal region
annotated property: has associated axiom(fol)
annotated target: (forall (x t) (if (SpatioTemporalRegion x) (exists (y) (and (SpatialRegion y) (spatiallyProjectsOntoAt x y t))))) // axiom label in BFO2 CLIF: [099-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/099-001

Axiom
annotated source: spatiotemporal region
annotated property: has associated axiom(fol)
annotated target: (forall (x y) (if (and (SpatioTemporalRegion x) (occurrentPartOf y x)) (SpatioTemporalRegion y))) // axiom label in BFO2 CLIF: [096-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/096-001

Axiom
annotated source: spatiotemporal region
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (SpatioTemporalRegion x) (Occurrent x))) // axiom label in BFO2 CLIF: [095-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/095-001

Axiom
annotated source: spatiotemporal region
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (SpatioTemporalRegion x) (exists (y) (and (TemporalRegion y) (temporallyProjectsOnto x y))))) // axiom label in BFO2 CLIF: [098-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/098-001

process
type: Class
subclass of: occurrent
subclass of: Restriction
  on property: specifically depends on at some time
  some values from: material entity
subclass of: Restriction
  on property: has occurrent part
  all values from: Class
    union of: process
    union of: process boundary
subclass of: Restriction
  on property: part of occurrent
  all values from: process
BFO OWL specification label: process
BFO CLIF specification label: Process
editor preferred term: process
example of usage: a process of cell-division, \ a beating of the heart
example of usage: a process of meiosis
example of usage: a process of sleeping
example of usage: the course of a disease
example of usage: the flight of a bird
example of usage: the life of an organism
example of usage: your process of aging.
definition: An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
definition: p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
editor note: BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)
imported from: BFO
imported from: ico.owl
imported from: obi.owl
imported from: ogg.owl
imported from: vo.owl
has associated axiom(fol): (iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]
comment: An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.

Axiom
annotated source: process
annotated property: definition
annotated target: p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/083-003

Axiom
annotated source: process
annotated property: has associated axiom(fol)
annotated target: (iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/083-003

disposition
type: Class
subclass of: realizable entity
subclass of: Restriction
  on property: part of continuant at some time
  all values from: Class
    complement of: role
subclass of: Restriction
  on property: part of continuant at all times that whole exists
  all values from: Class
    complement of: role
disjoint with: role
BFO OWL specification label: disposition
BFO CLIF specification label: Disposition
example of usage: an atom of element X has the disposition to decay to an atom of element Y
example of usage: certain people have a predisposition to colon cancer
example of usage: children are innately disposed to categorize objects in certain ways.
example of usage: the cell wall is disposed to filter chemicals in endocitosis and exocitosis
example of usage: the cell wall is disposed to filter chemicals in endocytosis and exocytosis
editor note: BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type [89
editor note: BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type.
imported from: oae.owl
imported from: ogg.owl
imported from: vo.owl
elucidation: b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])
has associated axiom(nl): If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])
has associated axiom(fol): (forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002]
has associated axiom(fol): (forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002]

Axiom
annotated source: disposition
annotated property: elucidation
annotated target: b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/062-002

Axiom
annotated source: disposition
annotated property: has associated axiom(nl)
annotated target: If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/063-002

Axiom
annotated source: disposition
annotated property: has associated axiom(fol)
annotated target: (forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/063-002

Axiom
annotated source: disposition
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/062-002

realizable entity
type: Class
subclass of: specifically dependent continuant
subclass of: Restriction
  on property: part of
  all values from: realizable entity
subclass of: Restriction
  on property: part of continuant at some time
  all values from: Class
    complement of: quality
subclass of: Restriction
  on property: part of continuant at all times that whole exists
  all values from: Class
    complement of: quality
disjoint with: quality
BFO OWL specification label: realizable
BFO CLIF specification label: RealizableEntity
editor preferred term: realizable entity
example of usage: the disposition of blood to coagulate
example of usage: the disposition of metal to conduct electricity
example of usage: the disposition of this piece of metal to conduct electricity.
example of usage: the disposition of your blood to coagulate
example of usage: the function of the reproductive organs
example of usage: the function of your reproductive organs
example of usage: the role of being a doctor
example of usage: the role of this boundary to delineate where Utah and Colorado meet
definition: A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances.
editor note: If a realizable entity [snap:RealizableEntity] inheres in a continuant [snap:Continuant], this does not imply that it is actually realized.
imported from: ico.owl
imported from: oae.owl
imported from: obi.owl
imported from: ogg.owl
imported from: vo.owl
elucidation: To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
has associated axiom(nl): All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
has associated axiom(fol): (forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
has associated axiom(fol): (forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]

Axiom
annotated source: realizable entity
annotated property: elucidation
annotated target: To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/058-002

Axiom
annotated source: realizable entity
annotated property: has associated axiom(nl)
annotated target: All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/060-002

Axiom
annotated source: realizable entity
annotated property: has associated axiom(fol)
annotated target: (forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/060-002

Axiom
annotated source: realizable entity
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/058-002

zero-dimensional spatial region
type: Class
subclass of: spatial region
disjoint with: three-dimensional spatial region
BFO OWL specification label: 0d-s-region
BFO CLIF specification label: ZeroDimensionalSpatialRegion
elucidation: A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001])
has associated axiom(fol): (forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001]

Axiom
annotated source: zero-dimensional spatial region
annotated property: elucidation
annotated target: A zero-dimensional spatial region is a point in space. (axiom label in BFO2 Reference: [037-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/037-001

Axiom
annotated source: zero-dimensional spatial region
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (ZeroDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [037-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/037-001

quality
type: Class
subclass of: specifically dependent continuant
subclass of: Restriction
  on property: part of
  all values from: quality
subclass of: Restriction
  on property: part of continuant at some time
  all values from: Class
    complement of: realizable entity
subclass of: Restriction
  on property: part of continuant at all times that whole exists
  all values from: Class
    complement of: realizable entity
BFO OWL specification label: quality
BFO CLIF specification label: Quality
example of usage: the ambient temperature of this portion of air
example of usage: the color of a tomato
example of usage: the length of the circumference of your waist
example of usage: the mass of this piece of gold.
example of usage: the shape of your nose
example of usage: the shape of your nostril
imported from: ogg.owl
imported from: ro.owl
imported from: vo.owl
elucidation: a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])
has associated axiom(nl): If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])
has associated axiom(fol): (forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001]
has associated axiom(fol): (forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001]

Axiom
annotated source: quality
annotated property: elucidation
annotated target: a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/055-001

Axiom
annotated source: quality
annotated property: has associated axiom(nl)
annotated target: If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/105-001

Axiom
annotated source: quality
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/055-001

Axiom
annotated source: quality
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/105-001

specifically dependent continuant
type: Class
subclass of: continuant
subclass of: Restriction
  on property: inheres in at all times
  some values from: Class
    intersection of: independent continuant
    intersection of: Class
      complement of: spatial region
subclass of: Restriction
  on property: part of
  all values from: specifically dependent continuant
subclass of: Restriction
  on property: part of continuant at some time
  all values from: Class
    complement of: Class
      union of: independent continuant
      union of: generically dependent continuant
subclass of: Restriction
  on property: part of continuant at all times that whole exists
  all values from: Class
    complement of: Class
      union of: independent continuant
      union of: generically dependent continuant
disjoint with: generically dependent continuant
BFO OWL specification label: sdc
BFO CLIF specification label: SpecificallyDependentContinuant
editor preferred term: specifically dependent continuant
example of usage: Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key
example of usage: of one-sided specifically dependent continuants: the mass of this tomato
example of usage: of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates.
example of usage: the color of a tomato
example of usage: the disposition of fish to decay
example of usage: the disposition of this fish to decay
example of usage: the function of the heart in the body: to pump blood, to receive de-oxygenated and oxygenated blood, etc.
example of usage: the function of this heart: to pump blood
example of usage: the liquidity of blood
example of usage: the mass of a cloud
example of usage: the mutual dependence of proton donors and acceptors in chemical reactions [79
example of usage: the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction
example of usage: the pink color of a medium rare piece of grilled filet mignon at its center
example of usage: the role of being a doctor
example of usage: the shape of this hole.
example of usage: the smell of mozzarella
example of usage: the smell of this portion of mozzarella
definition: A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.
definition: b is a relational specifically dependent continuant = Def. b is a specifically dependent continuant and there are n > 1 independent continuants c1, … cn which are not spatial regions are such that for all 1 i < j n, ci and cj share no common parts, are such that for each 1 i n, b s-depends_on ci at every time t during the course of b’s existence (axiom label in BFO2 Reference: [131-004])
definition: b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
editor note: Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
alternative term: mode
alternative term: property
alternative term: trope
imported from: ico.owl
imported from: oae.owl
imported from: obi.owl
imported from: ogg.owl
imported from: ro.owl
imported from: vo.owl
has associated axiom(fol): (iff (RelationalSpecificallyDependentContinuant a) (and (SpecificallyDependentContinuant a) (forall (t) (exists (b c) (and (not (SpatialRegion b)) (not (SpatialRegion c)) (not (= b c)) (not (exists (d) (and (continuantPartOfAt d b t) (continuantPartOfAt d c t)))) (specificallyDependsOnAt a b t) (specificallyDependsOnAt a c t)))))) // axiom label in BFO2 CLIF: [131-004]
has associated axiom(fol): (iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]
comment: A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same.

Axiom
annotated source: specifically dependent continuant
annotated property: definition
annotated target: b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/050-003

Axiom
annotated source: specifically dependent continuant
annotated property: editor note
annotated target: Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc.
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000005
comment: per discussion with Barry Smith

Axiom
annotated source: specifically dependent continuant
annotated property: has associated axiom(fol)
annotated target: (iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/050-003

role
type: Class
subclass of: realizable entity
subclass of: Restriction
  on property: part of continuant at some time
  all values from: Class
    complement of: disposition
subclass of: Restriction
  on property: part of continuant at all times that whole exists
  all values from: Class
    complement of: disposition
BFO OWL specification label: role
BFO CLIF specification label: Role
editor preferred term: role
example of usage: John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.
example of usage: the priest role
example of usage: the role of a biological grandfather as legal guardian in the context of a system of laws
example of usage: the role of a boundary to demarcate two neighboring administrative territories
example of usage: the role of a building in serving as a military target
example of usage: the role of a chemical compound in an experiment
example of usage: the role of a patient relative as defined by a hospital administrative form
example of usage: the role of a person as a surgeon
example of usage: the role of a stone in marking a property boundary
example of usage: the role of a student in a university
example of usage: the role of a woman as a legal mother in the context of system of laws
example of usage: the role of ingested matter in digestion
example of usage: the role of subject in a clinical trial
example of usage: the student role
definition: A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts.
editor note: BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives.
imported from: ico.owl
imported from: obi.owl
imported from: ogg.owl
imported from: vo.owl
elucidation: b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
has associated axiom(fol): (forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]

Axiom
annotated source: role
annotated property: elucidation
annotated target: b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/061-001

Axiom
annotated source: role
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/061-001

fiat object part
type: Class
subclass of: material entity
BFO OWL specification label: fiat-object-part
BFO CLIF specification label: FiatObjectPart
example of usage: or with divisions drawn by cognitive subjects for practical reasons, such as the division of a cake (before slicing) into (what will become) slices (and thus member parts of an object aggregate). However, this does not mean that fiat object parts are dependent for their existence on divisions or delineations effected by cognitive subjects. If, for example, it is correct to conceive geological layers of the Earth as fiat object parts of the Earth, then even though these layers were first delineated in recent times, still existed long before such delineation and what holds of these layers (for example that the oldest layers are also the lowest layers) did not begin to hold because of our acts of delineation.Treatment of material entity in BFOExamples viewed by some as problematic cases for the trichotomy of fiat object part, object, and object aggregate include: a mussel on (and attached to) a rock, a slime mold, a pizza, a cloud, a galaxy, a railway train with engine and multiple carriages, a clonal stand of quaking aspen, a bacterial community (biofilm), a broken femur. Note that, as Aristotle already clearly recognized, such problematic cases – which lie at or near the penumbra of instances defined by the categories in question – need not invalidate these categories. The existence of grey objects does not prove that there are not objects which are black and objects which are white; the existence of mules does not prove that there are not objects which are donkeys and objects which are horses. It does, however, show that the examples in question need to be addressed carefully in order to show how they can be fitted into the proposed scheme, for example by recognizing additional subdivisions [29
example of usage: the FMA:regional parts of an intact human body.
example of usage: the Western hemisphere of the Earth
example of usage: the division of the brain into regions
example of usage: the division of the planet into hemispheres
example of usage: the dorsal and ventral surfaces of the body
example of usage: the upper and lower lobes of the left lung
editor note: BFO 2 Reference: Most examples of fiat object parts are associated with theoretically drawn divisions
elucidation: b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])
has associated axiom(fol): (forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004]

Axiom
annotated source: fiat object part
annotated property: elucidation
annotated target: b is a fiat object part = Def. b is a material entity which is such that for all times t, if b exists at t then there is some object c such that b proper continuant_part of c at t and c is demarcated from the remainder of c by a two-dimensional continuant fiat boundary. (axiom label in BFO2 Reference: [027-004])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/027-004

Axiom
annotated source: fiat object part
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (FiatObjectPart x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y) (and (Object y) (properContinuantPartOfAt x y t)))))))) // axiom label in BFO2 CLIF: [027-004]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/027-004

one-dimensional spatial region
type: Class
subclass of: spatial region
disjoint with: three-dimensional spatial region
BFO OWL specification label: 1d-s-region
BFO CLIF specification label: OneDimensionalSpatialRegion
example of usage: an edge of a cube-shaped portion of space.
elucidation: A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001])
has associated axiom(fol): (forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001]

Axiom
annotated source: one-dimensional spatial region
annotated property: elucidation
annotated target: A one-dimensional spatial region is a line or aggregate of lines stretching from one point in space to another. (axiom label in BFO2 Reference: [038-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/038-001

Axiom
annotated source: one-dimensional spatial region
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (OneDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [038-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/038-001

object aggregate
type: Class
subclass of: material entity
BFO OWL specification label: object-aggregate
BFO CLIF specification label: ObjectAggregate
example of usage: a collection of cells in a blood biobank.
example of usage: a swarm of bees is an aggregate of members who are linked together through natural bonds
example of usage: a symphony orchestra
example of usage: an organization is an aggregate whose member parts have roles of specific types (for example in a jazz band, a chess club, a football team)
example of usage: defined by fiat: the aggregate of members of an organization
example of usage: defined through physical attachment: the aggregate of atoms in a lump of granite
example of usage: defined through physical containment: the aggregate of molecules of carbon dioxide in a sealed container
example of usage: defined via attributive delimitations such as: the patients in this hospital
example of usage: the aggregate of bearings in a constant velocity axle joint
example of usage: the aggregate of blood cells in your body
example of usage: the nitrogen atoms in the atmosphere
example of usage: the restaurants in Palo Alto
example of usage: your collection of Meissen ceramic plates.
editor note: An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
editor note: BFO 2 Reference: object aggregates may gain and lose parts while remaining numerically identical (one and the same individual) over time. This holds both for aggregates whose membership is determined naturally (the aggregate of cells in your body) and aggregates determined by fiat (a baseball team, a congressional committee).
definition source: ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
elucidation: b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
has associated axiom(fol): (forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]

Axiom
annotated source: object aggregate
annotated property: editor note
annotated target: An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000011

Axiom
annotated source: object aggregate
annotated property: editor note
annotated target: An entity a is an object aggregate if and only if there is a mutually exhaustive and pairwise disjoint partition of a into objects
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000301

Axiom
annotated source: object aggregate
annotated property: definition source
annotated target: ISBN:978-3-938793-98-5pp124-158#Thomas Bittner and Barry Smith, 'A Theory of Granular Partitions', in K. Munn and B. Smith (eds.), Applied Ontology: An Introduction, Frankfurt/Lancaster: ontos, 2008, 125-158.
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000300

Axiom
annotated source: object aggregate
annotated property: elucidation
annotated target: b is an object aggregate means: b is a material entity consisting exactly of a plurality of objects as member_parts at all times at which b exists. (axiom label in BFO2 Reference: [025-004])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/025-004

Axiom
annotated source: object aggregate
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (ObjectAggregate x) (and (MaterialEntity x) (forall (t) (if (existsAt x t) (exists (y z) (and (Object y) (Object z) (memberPartOfAt y x t) (memberPartOfAt z x t) (not (= y z)))))) (not (exists (w t_1) (and (memberPartOfAt w x t_1) (not (Object w)))))))) // axiom label in BFO2 CLIF: [025-004]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/025-004

three-dimensional spatial region
type: Class
subclass of: spatial region
BFO OWL specification label: 3d-s-region
BFO CLIF specification label: ThreeDimensionalSpatialRegion
example of usage: a cube-shaped region of space
example of usage: a sphere-shaped region of space,
imported from: ogg.owl
imported from: vo.owl
elucidation: A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001])
has associated axiom(fol): (forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001]

Axiom
annotated source: three-dimensional spatial region
annotated property: elucidation
annotated target: A three-dimensional spatial region is a spatial region that is of three dimensions. (axiom label in BFO2 Reference: [040-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/040-001

Axiom
annotated source: three-dimensional spatial region
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (ThreeDimensionalSpatialRegion x) (SpatialRegion x))) // axiom label in BFO2 CLIF: [040-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/040-001

site
type: Class
subclass of: immaterial entity
BFO OWL specification label: site
BFO CLIF specification label: Site
example of usage: Manhattan Canyon)
example of usage: a hole in the interior of a portion of cheese
example of usage: a rabbit hole
example of usage: an air traffic control region defined in the airspace above an airport
example of usage: the Grand Canyon
example of usage: the Piazza San Marco
example of usage: the cockpit of an aircraft
example of usage: the hold of a ship
example of usage: the interior of a kangaroo pouch
example of usage: the interior of the trunk of your car
example of usage: the interior of your bedroom
example of usage: the interior of your office
example of usage: the interior of your refrigerator
example of usage: the lumen of your gut
example of usage: your left nostril (a fiat part – the opening – of your left nasal cavity)
imported from: bfo.owl
elucidation: b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])
has associated axiom(fol): (forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002]

Axiom
annotated source: site
annotated property: elucidation
annotated target: b is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/034-002

Axiom
annotated source: site
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (Site x) (ImmaterialEntity x))) // axiom label in BFO2 CLIF: [034-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/034-002

object
type: Class
subclass of: material entity
BFO OWL specification label: object
BFO CLIF specification label: Object
example of usage: atom
example of usage: cell
example of usage: cells and organisms
example of usage: engineered artifacts
example of usage: grain of sand
example of usage: molecule
example of usage: organelle
example of usage: organism
example of usage: planet
example of usage: solid portions of matter
example of usage: star
editor note: BFO 2 Reference: BFO rests on the presupposition that at multiple micro-, meso- and macroscopic scales reality exhibits certain stable, spatially separated or separable material units, combined or combinable into aggregates of various sorts (for example organisms into what are called ‘populations’). Such units play a central role in almost all domains of natural science from particle physics to cosmology. Many scientific laws govern the units in question, employing general terms (such as ‘molecule’ or ‘planet’) referring to the types and subtypes of units, and also to the types and subtypes of the processes through which such units develop and interact. The division of reality into such natural units is at the heart of biological science, as also is the fact that these units may form higher-level units (as cells form multicellular organisms) and that they may also form aggregates of units, for example as cells form portions of tissue and organs form families, herds, breeds, species, and so on. At the same time, the division of certain portions of reality into engineered units (manufactured artifacts) is the basis of modern industrial technology, which rests on the distributed mass production of engineered parts through division of labor and on their assembly into larger, compound units such as cars and laptops. The division of portions of reality into units is one starting point for the phenomenon of counting.
editor note: BFO 2 Reference: Each object is such that there are entities of which we can assert unproblematically that they lie in its interior, and other entities of which we can assert unproblematically that they lie in its exterior. This may not be so for entities lying at or near the boundary between the interior and exterior. This means that two objects – for example the two cells depicted in Figure 3 – may be such that there are material entities crossing their boundaries which belong determinately to neither cell. Something similar obtains in certain cases of conjoined twins (see below).
editor note: BFO 2 Reference: To say that b is causally unified means: b is a material entity which is such that its material parts are tied together in such a way that, in environments typical for entities of the type in question,if c, a continuant part of b that is in the interior of b at t, is larger than a certain threshold size (which will be determined differently from case to case, depending on factors such as porosity of external cover) and is moved in space to be at t at a location on the exterior of the spatial region that had been occupied by b at t, then either b’s other parts will be moved in coordinated fashion or b will be damaged (be affected, for example, by breakage or tearing) in the interval between t and t.causal changes in one part of b can have consequences for other parts of b without the mediation of any entity that lies on the exterior of b. Material entities with no proper material parts would satisfy these conditions trivially. Candidate examples of types of causal unity for material entities of more complex sorts are as follows (this is not intended to be an exhaustive list):CU1: Causal unity via physical coveringHere the parts in the interior of the unified entity are combined together causally through a common membrane or other physical covering\. The latter points outwards toward and may serve a protective function in relation to what lies on the exterior of the entity [13, 47
editor note: BFO 2 Reference: an object is a maximal causally unified material entity
editor note: BFO 2 Reference: ‘objects’ are sometimes referred to as ‘grains’ [74
elucidation: b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001])

Axiom
annotated source: object
annotated property: elucidation
annotated target: b is an object means: b is a material entity which manifests causal unity of one or other of the types CUn listed above & is of a type (a material universal) instances of which are maximal relative to this criterion of causal unity. (axiom label in BFO2 Reference: [024-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/024-001

generically dependent continuant
type: Class
subclass of: continuant
subclass of: Restriction
  on property: concretized by at some time
  some values from: specifically dependent continuant
subclass of: Restriction
  on property: part of
  all values from: generically dependent continuant
subclass of: Restriction
  on property: part of continuant at some time
  all values from: Class
    complement of: Class
      union of: independent continuant
      union of: specifically dependent continuant
subclass of: Restriction
  on property: part of continuant at all times that whole exists
  all values from: Class
    complement of: Class
      union of: independent continuant
      union of: specifically dependent continuant
BFO OWL specification label: gdc
BFO CLIF specification label: GenericallyDependentContinuant
editor preferred term: generically dependent continuant
example of usage: The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity.
example of usage: a certain PDF file that exists in different and in several hard drives
example of usage: the pdf file on your laptop, the pdf file that is a copy thereof on my laptop
example of usage: the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule.
definition: A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.
definition: b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
imported from: ico.owl
imported from: obi.owl
imported from: ogg.owl
imported from: vo.owl
has associated axiom(fol): (iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]
comment: A continuant that is dependent on one or other independent continuant bearers. For every instance of A requires some instance of (an independent continuant type) B but which instance of B serves can change from time to time.

Axiom
annotated source: generically dependent continuant
annotated property: definition
annotated target: b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/074-001

Axiom
annotated source: generically dependent continuant
annotated property: has associated axiom(fol)
annotated target: (iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/074-001

function
type: Class
subclass of: disposition
BFO OWL specification label: function
BFO CLIF specification label: Function
example of usage: the function of a hammer to drive in nails
example of usage: the function of a heart pacemaker to regulate the beating of a heart through electricity
example of usage: the function of amylase in saliva to break down starch into sugar
editor note: BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc.
elucidation: A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])
has associated axiom(fol): (forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001]

Axiom
annotated source: function
annotated property: elucidation
annotated target: A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/064-001

Axiom
annotated source: function
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/064-001

process boundary
type: Class
subclass of: occurrent
subclass of: Restriction
  on property: exists at
  all values from: zero-dimensional temporal region
subclass of: Restriction
  on property: has occurrent part
  all values from: process boundary
subclass of: Restriction
  on property: occupies spatiotemporal region
  all values from: Class
    intersection of: spatiotemporal region
    intersection of: Restriction
      on property: temporal part of
      some values from: spatiotemporal region
subclass of: Restriction
  on property: part of occurrent
  all values from: Class
    union of: process
    union of: process boundary
BFO OWL specification label: p-boundary
BFO CLIF specification label: ProcessBoundary
example of usage: the boundary between the 2nd and 3rd year of your life.
definition: p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001])
imported from: ogg.owl
imported from: vo.owl
has associated axiom(nl): Every process boundary occupies_temporal_region a zero-dimensional temporal region. (axiom label in BFO2 Reference: [085-002])
has associated axiom(fol): (forall (x) (if (ProcessBoundary x) (exists (y) (and (ZeroDimensionalTemporalRegion y) (occupiesTemporalRegion x y))))) // axiom label in BFO2 CLIF: [085-002]
has associated axiom(fol): (iff (ProcessBoundary a) (exists (p) (and (Process p) (temporalPartOf a p) (not (exists (b) (properTemporalPartOf b a)))))) // axiom label in BFO2 CLIF: [084-001]

Axiom
annotated source: process boundary
annotated property: definition
annotated target: p is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/084-001

Axiom
annotated source: process boundary
annotated property: has associated axiom(nl)
annotated target: Every process boundary occupies_temporal_region a zero-dimensional temporal region. (axiom label in BFO2 Reference: [085-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/085-002

Axiom
annotated source: process boundary
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (ProcessBoundary x) (exists (y) (and (ZeroDimensionalTemporalRegion y) (occupiesTemporalRegion x y))))) // axiom label in BFO2 CLIF: [085-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/085-002

Axiom
annotated source: process boundary
annotated property: has associated axiom(fol)
annotated target: (iff (ProcessBoundary a) (exists (p) (and (Process p) (temporalPartOf a p) (not (exists (b) (properTemporalPartOf b a)))))) // axiom label in BFO2 CLIF: [084-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/084-001

one-dimensional temporal region
type: Class
subclass of: temporal region
disjoint with: zero-dimensional temporal region
BFO OWL specification label: 1d-t-region
BFO CLIF specification label: OneDimensionalTemporalRegion
example of usage: the temporal region during which a process occurs.
editor note: BFO 2 Reference: A temporal interval is a special kind of one-dimensional temporal region, namely one that is self-connected (is without gaps or breaks).
elucidation: A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001])
has associated axiom(fol): (forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001]

Axiom
annotated source: one-dimensional temporal region
annotated property: elucidation
annotated target: A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/103-001

Axiom
annotated source: one-dimensional temporal region
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (OneDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [103-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/103-001

material entity
type: Class
subclass of: independent continuant
subclass of: Restriction
  on property: occupies spatial region at some time
  all values from: three-dimensional spatial region
subclass of: Restriction
  on property: part of continuant at some time
  all values from: material entity
subclass of: Restriction
  on property: has continuant part at some time
  all values from: Class
    union of: material entity
    union of: immaterial entity
subclass of: Restriction
  on property: part of continuant at all times that whole exists
  all values from: material entity
subclass of: Restriction
  on property: has continuant part at all times that part exists
  all values from: Class
    union of: material entity
    union of: immaterial entity
disjoint with: immaterial entity
BFO OWL specification label: material
BFO CLIF specification label: MaterialEntity
editor preferred term: material entity
example of usage: a flame
example of usage: a forest fire
example of usage: a human being
example of usage: a hurricane
example of usage: a photon
example of usage: a puff of smoke
example of usage: a sea wave
example of usage: a tornado
example of usage: an aggregate of human beings.
example of usage: an energy wave
example of usage: an epidemic
example of usage: the undetached arm of a human being
definition: An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.
editor note: BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60
editor note: BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity.
editor note: BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here.
editor note: Elucidation: An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time.
editor note: Examples: collection of random bacteria, a chair, dorsal surface of the body
editor note: Material entity [snap:MaterialEntity] subsumes object [snap:Object], fiat object part [snap:FiatObjectPart], and object aggregate [snap:ObjectAggregate], which assume a three level theory of granularity, which is inadequate for some domains, such as biology.
imported from: BFO
imported from: ico.owl
imported from: obi.owl
imported from: ogg.owl
imported from: vo.owl
elucidation: A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
has associated axiom(nl): Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
has associated axiom(nl): every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
has associated axiom(fol): (forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
has associated axiom(fol): (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
has associated axiom(fol): (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]

Axiom
annotated source: material entity
annotated property: elucidation
annotated target: A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/019-002

Axiom
annotated source: material entity
annotated property: has associated axiom(nl)
annotated target: Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/020-002

Axiom
annotated source: material entity
annotated property: has associated axiom(nl)
annotated target: every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/021-002

Axiom
annotated source: material entity
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/019-002

Axiom
annotated source: material entity
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/021-002

Axiom
annotated source: material entity
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/020-002

continuant fiat boundary
type: Class
subclass of: immaterial entity
BFO OWL specification label: cf-boundary
BFO CLIF specification label: ContinuantFiatBoundary
definition: b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])
editor note: BFO 2 Reference: In BFO 1.1 the assumption was made that the external surface of a material entity such as a cell could be treated as if it were a boundary in the mathematical sense. The new document propounds the view that when we talk about external surfaces of material objects in this way then we are talking about something fiat. To be dealt with in a future version: fiat boundaries at different levels of granularity.More generally, the focus in discussion of boundaries in BFO 2.0 is now on fiat boundaries, which means: boundaries for which there is no assumption that they coincide with physical discontinuities. The ontology of boundaries becomes more closely allied with the ontology of regions.
editor note: BFO 2 Reference: a continuant fiat boundary is a boundary of some material entity (for example: the plane separating the Northern and Southern hemispheres; the North Pole), or it is a boundary of some immaterial entity (for example of some portion of airspace). Three basic kinds of continuant fiat boundary can be distinguished (together with various combination kinds [29
editor note: Continuant fiat boundary doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the mereological sum of two-dimensional continuant fiat boundary and a one dimensional continuant fiat boundary that doesn't overlap it. The situation is analogous to temporal and spatial regions.
has associated axiom(nl): Every continuant fiat boundary is located at some spatial region at every time at which it exists
has associated axiom(fol): (iff (ContinuantFiatBoundary a) (and (ImmaterialEntity a) (exists (b) (and (or (ZeroDimensionalSpatialRegion b) (OneDimensionalSpatialRegion b) (TwoDimensionalSpatialRegion b)) (forall (t) (locatedInAt a b t)))) (not (exists (c t) (and (SpatialRegion c) (continuantPartOfAt c a t)))))) // axiom label in BFO2 CLIF: [029-001]

Axiom
annotated source: continuant fiat boundary
annotated property: definition
annotated target: b is a continuant fiat boundary = Def. b is an immaterial entity that is of zero, one or two dimensions and does not include a spatial region as part. (axiom label in BFO2 Reference: [029-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/029-001

Axiom
annotated source: continuant fiat boundary
annotated property: editor note
annotated target: Continuant fiat boundary doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the mereological sum of two-dimensional continuant fiat boundary and a one dimensional continuant fiat boundary that doesn't overlap it. The situation is analogous to temporal and spatial regions.
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000008

Axiom
annotated source: continuant fiat boundary
annotated property: has associated axiom(fol)
annotated target: (iff (ContinuantFiatBoundary a) (and (ImmaterialEntity a) (exists (b) (and (or (ZeroDimensionalSpatialRegion b) (OneDimensionalSpatialRegion b) (TwoDimensionalSpatialRegion b)) (forall (t) (locatedInAt a b t)))) (not (exists (c t) (and (SpatialRegion c) (continuantPartOfAt c a t)))))) // axiom label in BFO2 CLIF: [029-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/029-001

immaterial entity
type: Class
subclass of: independent continuant
subclass of: Restriction
  on property: has continuant part at some time
  all values from: immaterial entity
subclass of: Restriction
  on property: has continuant part at some time
  all values from: Class
    complement of: material entity
subclass of: Restriction
  on property: has continuant part at all times that part exists
  all values from: immaterial entity
subclass of: Restriction
  on property: has continuant part at all times that part exists
  all values from: Class
    complement of: material entity
BFO OWL specification label: immaterial
BFO CLIF specification label: ImmaterialEntity
editor note: BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10
imported from: bfo.owl
imported from: ogg.owl
imported from: vo.owl

one-dimensional continuant fiat boundary
type: Class
subclass of: continuant fiat boundary
disjoint with: two-dimensional continuant fiat boundary
disjoint with: zero-dimensional continuant fiat boundary
BFO OWL specification label: 1d-cf-boundary
BFO CLIF specification label: OneDimensionalContinuantFiatBoundary
example of usage: The Equator
example of usage: all geopolitical boundaries
example of usage: all lines of latitude and longitude
example of usage: the line separating the outer surface of the mucosa of the lower lip from the outer surface of the skin of the chin.
example of usage: the median sulcus of your tongue
elucidation: a one-dimensional continuant fiat boundary is a continuous fiat line whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [032-001])
has associated axiom(fol): (iff (OneDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (OneDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [032-001]

Axiom
annotated source: one-dimensional continuant fiat boundary
annotated property: elucidation
annotated target: a one-dimensional continuant fiat boundary is a continuous fiat line whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [032-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/032-001

Axiom
annotated source: one-dimensional continuant fiat boundary
annotated property: has associated axiom(fol)
annotated target: (iff (OneDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (OneDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [032-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/032-001

process profile
type: Class
subclass of: process
disjoint with: history
BFO OWL specification label: process-profile
BFO CLIF specification label: ProcessProfile
example of usage: On a somewhat higher level of complexity are what we shall call rate process profiles, which are the targets of selective abstraction focused not on determinate quality magnitudes plotted over time, but rather on certain ratios between these magnitudes and elapsed times. A speed process profile, for example, is represented by a graph plotting against time the ratio of distance covered per unit of time. Since rates may change, and since such changes, too, may have rates of change, we have to deal here with a hierarchy of process profile universals at successive levels
example of usage: One important sub-family of rate process profiles is illustrated by the beat or frequency profiles of cyclical processes, illustrated by the 60 beats per minute beating process of John’s heart, or the 120 beats per minute drumming process involved in one of John’s performances in a rock band, and so on. Each such process includes what we shall call a beat process profile instance as part, a subtype of rate process profile in which the salient ratio is not distance covered but rather number of beat cycles per unit of time. Each beat process profile instance instantiates the determinable universal beat process profile. But it also instantiates multiple more specialized universals at lower levels of generality, selected from rate process profilebeat process profileregular beat process profile3 bpm beat process profile4 bpm beat process profileirregular beat process profileincreasing beat process profileand so on.In the case of a regular beat process profile, a rate can be assigned in the simplest possible fashion by dividing the number of cycles by the length of the temporal region occupied by the beating process profile as a whole. Irregular process profiles of this sort, for example as identified in the clinic, or in the readings on an aircraft instrument panel, are often of diagnostic significance.
example of usage: The simplest type of process profiles are what we shall call ‘quality process profiles’, which are the process profiles which serve as the foci of the sort of selective abstraction that is involved when measurements are made of changes in single qualities, as illustrated, for example, by process profiles of mass, temperature, aortic pressure, and so on.
definition: b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002])
elucidation: b process_profile_of c holds when b proper_occurrent_part_of c& there is some proper_occurrent_part d of c which has no parts in common with b & is mutually dependent on b& is such that b, c and d occupy the same temporal region (axiom label in BFO2 Reference: [094-005])
has associated axiom(fol): (forall (x y) (if (processProfileOf x y) (and (properContinuantPartOf x y) (exists (z t) (and (properOccurrentPartOf z y) (TemporalRegion t) (occupiesSpatioTemporalRegion x t) (occupiesSpatioTemporalRegion y t) (occupiesSpatioTemporalRegion z t) (not (exists (w) (and (occurrentPartOf w x) (occurrentPartOf w z))))))))) // axiom label in BFO2 CLIF: [094-005]
has associated axiom(fol): (iff (ProcessProfile a) (exists (b) (and (Process b) (processProfileOf a b)))) // axiom label in BFO2 CLIF: [093-002]

Axiom
annotated source: process profile
annotated property: definition
annotated target: b is a process_profile =Def. there is some process c such that b process_profile_of c (axiom label in BFO2 Reference: [093-002])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/093-002

Axiom
annotated source: process profile
annotated property: elucidation
annotated target: b process_profile_of c holds when b proper_occurrent_part_of c& there is some proper_occurrent_part d of c which has no parts in common with b & is mutually dependent on b& is such that b, c and d occupy the same temporal region (axiom label in BFO2 Reference: [094-005])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/094-005

Axiom
annotated source: process profile
annotated property: has associated axiom(fol)
annotated target: (forall (x y) (if (processProfileOf x y) (and (properContinuantPartOf x y) (exists (z t) (and (properOccurrentPartOf z y) (TemporalRegion t) (occupiesSpatioTemporalRegion x t) (occupiesSpatioTemporalRegion y t) (occupiesSpatioTemporalRegion z t) (not (exists (w) (and (occurrentPartOf w x) (occurrentPartOf w z))))))))) // axiom label in BFO2 CLIF: [094-005]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/094-005

Axiom
annotated source: process profile
annotated property: has associated axiom(fol)
annotated target: (iff (ProcessProfile a) (exists (b) (and (Process b) (processProfileOf a b)))) // axiom label in BFO2 CLIF: [093-002]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/093-002

relational quality
type: Class
subclass of: quality
BFO OWL specification label: r-quality
BFO CLIF specification label: RelationalQuality
example of usage: John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married.
example of usage: a marriage bond, an instance of requited love, an obligation between one person and another.
definition: b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])
has associated axiom(fol): (iff (RelationalQuality a) (exists (b c t) (and (IndependentContinuant b) (IndependentContinuant c) (qualityOfAt a b t) (qualityOfAt a c t)))) // axiom label in BFO2 CLIF: [057-001]

Axiom
annotated source: relational quality
annotated property: definition
annotated target: b is a relational quality = Def. for some independent continuants c, d and for some time t: b quality_of c at t & b quality_of d at t. (axiom label in BFO2 Reference: [057-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/057-001

Axiom
annotated source: relational quality
annotated property: has associated axiom(fol)
annotated target: (iff (RelationalQuality a) (exists (b c t) (and (IndependentContinuant b) (IndependentContinuant c) (qualityOfAt a b t) (qualityOfAt a c t)))) // axiom label in BFO2 CLIF: [057-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/057-001

two-dimensional continuant fiat boundary
type: Class
subclass of: continuant fiat boundary
BFO OWL specification label: 2d-cf-boundary
BFO CLIF specification label: TwoDimensionalContinuantFiatBoundary
elucidation: a two-dimensional continuant fiat boundary (surface) is a self-connected fiat surface whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [033-001])
has associated axiom(fol): (iff (TwoDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (TwoDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [033-001]

Axiom
annotated source: two-dimensional continuant fiat boundary
annotated property: elucidation
annotated target: a two-dimensional continuant fiat boundary (surface) is a self-connected fiat surface whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [033-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/033-001

Axiom
annotated source: two-dimensional continuant fiat boundary
annotated property: has associated axiom(fol)
annotated target: (iff (TwoDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (TwoDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [033-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/033-001

zero-dimensional continuant fiat boundary
type: Class
subclass of: continuant fiat boundary
BFO OWL specification label: 0d-cf-boundary
BFO CLIF specification label: ZeroDimensionalContinuantFiatBoundary
example of usage: the geographic North Pole
example of usage: the point of origin of some spatial coordinate system.
example of usage: the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet
editor note: zero dimension continuant fiat boundaries are not spatial points. Considering the example 'the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet' : There are many frames in which that point is zooming through many points in space. Whereas, no matter what the frame, the quadripoint is always in the same relation to the boundaries of Colorado, Utah, New Mexico, and Arizona.
elucidation: a zero-dimensional continuant fiat boundary is a fiat point whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [031-001])
has associated axiom(fol): (iff (ZeroDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (ZeroDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [031-001]

Axiom
annotated source: zero-dimensional continuant fiat boundary
annotated property: editor note
annotated target: zero dimension continuant fiat boundaries are not spatial points. Considering the example 'the quadripoint where the boundaries of Colorado, Utah, New Mexico, and Arizona meet' : There are many frames in which that point is zooming through many points in space. Whereas, no matter what the frame, the quadripoint is always in the same relation to the boundaries of Colorado, Utah, New Mexico, and Arizona.
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/0000001
comment: requested by Melanie Courtot

Axiom
annotated source: zero-dimensional continuant fiat boundary
annotated property: elucidation
annotated target: a zero-dimensional continuant fiat boundary is a fiat point whose location is defined in relation to some material entity. (axiom label in BFO2 Reference: [031-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/031-001

Axiom
annotated source: zero-dimensional continuant fiat boundary
annotated property: has associated axiom(fol)
annotated target: (iff (ZeroDimensionalContinuantFiatBoundary a) (and (ContinuantFiatBoundary a) (exists (b) (and (ZeroDimensionalSpatialRegion b) (forall (t) (locatedInAt a b t)))))) // axiom label in BFO2 CLIF: [031-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/031-001

zero-dimensional temporal region
type: Class
subclass of: temporal region
subclass of: Restriction
  on property: has proper occurrent part
  all values from: Nothing
BFO OWL specification label: 0d-t-region
BFO CLIF specification label: ZeroDimensionalTemporalRegion
example of usage: a temporal region that is occupied by a process boundary
example of usage: right now
example of usage: the moment at which a child is born
example of usage: the moment at which a finger is detached in an industrial accident
example of usage: the moment of death.
alternative term: temporal instant.
imported from: ogg.owl
imported from: vo.owl
elucidation: A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001])
has associated axiom(fol): (forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001]

Axiom
annotated source: zero-dimensional temporal region
annotated property: elucidation
annotated target: A zero-dimensional temporal region is a temporal region that is without extent. (axiom label in BFO2 Reference: [102-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/102-001

Axiom
annotated source: zero-dimensional temporal region
annotated property: has associated axiom(fol)
annotated target: (forall (x) (if (ZeroDimensionalTemporalRegion x) (TemporalRegion x))) // axiom label in BFO2 CLIF: [102-001]
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/102-001

history
type: Class
subclass of: process
BFO OWL specification label: history
BFO CLIF specification label: History
elucidation: A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])

Axiom
annotated source: history
annotated property: elucidation
annotated target: A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by a material entity or site, including processes on the surface of the entity or within the cavities to which it serves as host. (axiom label in BFO2 Reference: [138-001])
has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/138-001

gross anatomical part
type: Class
subclass of: material entity
editor preferred term: gross anatomical part
definition: Anatomical structure that is part of a multicellular organism and is at the gross anatomical level, e.g. above the level of a cell. Included are portions of organism substances such as blood, multi-cell-part structures such as axon tracts, acellular anatomical structures such as hair, and organism subdivisions such as head. Excluded is the whole organism and more granular parts of the organism, such as atoms, molecules, macromolecular complexes and cells.
imported from: caro.owl
imported from: obi.owl
imported from: vo.owl

urea
type: Class
subclass of: molecular entity
definition: A carbonyl group with two C-bound amine groups.
imported from: chebi.owl
imported from: vo.owl
has_alternative_id: CHEBI:15292
has_alternative_id: CHEBI:27218
has_alternative_id: CHEBI:46379
has_alternative_id: CHEBI:9888
database_cross_reference: Beilstein:635724
database_cross_reference: ChemIDplus:57-13-6
database_cross_reference: CiteXplore:22770225
database_cross_reference: DrugBank:DB03904
database_cross_reference: Gmelin:1378
database_cross_reference: HMDB:HMDB00294
database_cross_reference: KEGG COMPOUND:57-13-6
database_cross_reference: KEGG COMPOUND:C00086
database_cross_reference: KEGG DRUG:D00023
database_cross_reference: MetaCyc:UREA
database_cross_reference: NIST Chemistry WebBook:57-13-6
database_cross_reference: PDBeChem:URE
database_cross_reference: Reaxys:635724
database_cross_reference: UM-BBD:c0165
database_cross_reference: Wikipedia:Urea
has_exact_synonym: UREA
has_exact_synonym: Urea
has_exact_synonym: urea
has_obo_namespace: chebi_ontology
has_related_synonym: CH4N2O
has_related_synonym: Carbamide
has_related_synonym: E927b
has_related_synonym: H2NC(O)NH2
has_related_synonym: Harnstoff
has_related_synonym: InChI=1S/CH4N2O/c2-1(3)4/h(H4,2,3,4)
has_related_synonym: InChIKey=XSQUKJJJFZCRTK-UHFFFAOYSA-N
has_related_synonym: Karbamid
has_related_synonym: NC(N)=O
has_related_synonym: carbamide
has_related_synonym: carbonyldiamide
has_related_synonym: ur
has_related_synonym: uree
id: CHEBI:16199

formaldehyde
type: Class
subclass of: molecular entity
definition: The simplest aldehyde.
imported from: chebi.owl
imported from: vo.owl
has_alternative_id: CHEBI:14274
has_alternative_id: CHEBI:24077
has_alternative_id: CHEBI:337763
has_alternative_id: CHEBI:5142
database_cross_reference: Beilstein:1209228
database_cross_reference: ChEMBL:7381846
database_cross_reference: ChemIDplus:50-00-0
database_cross_reference: CiteXplore:18837732
database_cross_reference: DrugBank:DB03843
database_cross_reference: Gmelin:445
database_cross_reference: KEGG COMPOUND:50-00-0
database_cross_reference: KEGG COMPOUND:C00067
database_cross_reference: NIST Chemistry WebBook:50-00-0
database_cross_reference: PDBeChem:FLH
database_cross_reference: UM-BBD:c0122
database_cross_reference: Wikipedia:Formaldehyde
has_exact_synonym: FORMALDEHYDE
has_exact_synonym: Formaldehyde
has_exact_synonym: formaldehyde
has_obo_namespace: chebi_ontology
has_related_synonym: CH2O
has_related_synonym: FORMALIN
has_related_synonym: Formaldehyd
has_related_synonym: Formalin
has_related_synonym: InChI=1S/CH2O/c1-2/h1H2
has_related_synonym: InChIKey=WSFSSNUMVMOOMR-UHFFFAOYSA-N
has_related_synonym: Methanal
has_related_synonym: Methylene oxide
has_related_synonym: Oxomethane
has_related_synonym: Oxomethylene
has_related_synonym: [H]C([H])=O
id: CHEBI:16842

streptomycin
type: Class
subclass of: molecular entity
definition: A amino cyclitol glycoside that consists of streptidine having a disaccharyl moiety attached at the 4-position. The parent of the streptomycin class
imported from: chebi.owl
imported from: vo.owl
has_alternative_id: CHEBI:15119
has_alternative_id: CHEBI:26784
has_alternative_id: CHEBI:45745
has_alternative_id: CHEBI:9284
database_cross_reference: Beilstein:74498
database_cross_reference: ChemIDplus:57-92-1
database_cross_reference: CiteXplore:11228320
database_cross_reference: CiteXplore:11905029
database_cross_reference: CiteXplore:12118520
database_cross_reference: CiteXplore:13030054
database_cross_reference: CiteXplore:13116094
database_cross_reference: CiteXplore:13136149
database_cross_reference: CiteXplore:13596285
database_cross_reference: CiteXplore:13691614
database_cross_reference: CiteXplore:13985260
database_cross_reference: CiteXplore:13990247
database_cross_reference: CiteXplore:14623118
database_cross_reference: CiteXplore:14828344
database_cross_reference: CiteXplore:14852338
database_cross_reference: CiteXplore:14939639
database_cross_reference: CiteXplore:15081082
database_cross_reference: CiteXplore:15137533
database_cross_reference: CiteXplore:15207172
database_cross_reference: CiteXplore:15686853
database_cross_reference: CiteXplore:15736038
database_cross_reference: CiteXplore:16904706
database_cross_reference: CiteXplore:17105735
database_cross_reference: CiteXplore:17238915
database_cross_reference: CiteXplore:17429930
database_cross_reference: CiteXplore:18173084
database_cross_reference: CiteXplore:18916143
database_cross_reference: CiteXplore:19052412
database_cross_reference: CiteXplore:19335957
database_cross_reference: CiteXplore:21350946
database_cross_reference: CiteXplore:21362244
database_cross_reference: CiteXplore:21593257
database_cross_reference: CiteXplore:21937264
database_cross_reference: DrugBank:DB01082
database_cross_reference: KEGG COMPOUND:57-92-1
database_cross_reference: KEGG COMPOUND:C00413
database_cross_reference: KEGG DRUG:D08531
database_cross_reference: PDBeChem:SRY
database_cross_reference: Reaxys:74498
database_cross_reference: Wikipedia:Streptomycin
has_exact_synonym: N,N'''-[(1R,2R,3S,4R,5R,6S)-4-{5-deoxy-2-O-[2-deoxy-2-(methylamino)-alpha-L-glucopyranosyl]-3-C-formyl-alpha-L-lyxofuranosyloxy}-2,5,6-trihydroxycyclohexane-1,3-diyl]diguanidine
has_exact_synonym: STREPTOMYCIN
has_obo_namespace: chebi_ontology
has_related_synonym: 2,4-Diguanidino-3,5,6-trihydroxycyclohexyl 5-deoxy-2-O-(2-deoxy-2-methylamino-alpha-L-glucopyranosyl)-3-C-formyl-beta-L-lyxopentanofuranoside
has_related_synonym: C21H39N7O12
has_related_synonym: InChI=1S/C21H39N7O12/c1-5-21(36,4-30)16(40-17-9(26-2)13(34)10(31)6(3-29)38-17)18(37-5)39-15-8(28-20(24)25)11(32)7(27-19(22)23)12(33)14(15)35/h4-18,26,29,31-36H,3H2,1-2H3,(H4,22,23,27)(H4,24,25,28)/t5-,6-,7+,8-,9-,10-,11+,12-,13-,14+,15+,16-,17-,18-,21+/m0/s1
has_related_synonym: InChIKey=UCSJYZPVAKXKNQ-HZYVHMACSA-N
has_related_synonym: Kantrex
has_related_synonym: SM
has_related_synonym: [2-deoxy-2-(dimethylamino)-alpha-L-glucopyranosyl]-(1->2)-[5-deoxy-3-C-formyl-alpha-L-lyxofuranosyl]-(1->4)-{N',N'''-[(1,3,5/2,4,6)-2,4,5,6-tetrahydroxycyclohexane-1,3-diyl]diguanidine}
has_related_synonym: streptomycin
id: CHEBI:17076

lactose
type: Class
subclass of: molecular entity
definition: A disaccharide, found most notably in milk, that consists of D-galactose and D-glucose fragments bonded through a beta-1->4 glycosidic linkage. The glucose fragment can be in either the alpha- or beta-pyranose form, whereas the galactose fragment can only have the beta-pyranose form.
imported from: chebi.owl
imported from: vo.owl
has_alternative_id: CHEBI:10296
has_alternative_id: CHEBI:10380
has_alternative_id: CHEBI:14497
has_alternative_id: CHEBI:22460
has_alternative_id: CHEBI:22760
has_alternative_id: CHEBI:25005
has_alternative_id: CHEBI:27755
has_alternative_id: CHEBI:613009
database_cross_reference: Beilstein:1292745
database_cross_reference: ChEMBL:19053747
database_cross_reference: ChemIDplus:63-42-3
database_cross_reference: CiteXplore:1292745
database_cross_reference: CiteXplore:17329833
database_cross_reference: CiteXplore:18300214
database_cross_reference: CiteXplore:19846069
database_cross_reference: CiteXplore:19913595
database_cross_reference: CiteXplore:20094999
database_cross_reference: CiteXplore:20503067
database_cross_reference: CiteXplore:20699559
database_cross_reference: CiteXplore:20873837
database_cross_reference: CiteXplore:20961532
database_cross_reference: CiteXplore:21403918
database_cross_reference: CiteXplore:2432147
database_cross_reference: CiteXplore:2456994
database_cross_reference: CiteXplore:6194884
database_cross_reference: CiteXplore:7574700
database_cross_reference: Gmelin:882872
database_cross_reference: KEGG COMPOUND:C00243
database_cross_reference: KEGG GLYCAN:G10504
database_cross_reference: NIST Chemistry WebBook:63-42-3
database_cross_reference: Reaxys:1292745
has_exact_synonym: beta-D-galactopyranosyl-(1->4)-D-glucopyranose
has_exact_synonym: lactose
has_obo_namespace: chebi_ontology
has_related_synonym: (+)-lactose
has_related_synonym: (Gal)1 (Glc)1
has_related_synonym: 1-beta-D-Galactopyranosyl-4-D-glucopyranose
has_related_synonym: 4-(beta-D-galactosido)-D-glucose
has_related_synonym: 4-O-beta-D-galactopyranosyl-D-glucose
has_related_synonym: C12H22O11
has_related_synonym: D-lactose
has_related_synonym: Galbeta1-4-Glc
has_related_synonym: InChI=1S/C12H22O11/c13-1-3-5(15)6(16)9(19)12(22-3)23-10-4(2-14)21-11(20)8(18)7(10)17/h3-20H,1-2H2/t3-,4-,5+,6+,7-,8-,9-,10-,11?,12+/m1/s1
has_related_synonym: InChIKey=GUBGYTABKSRVRQ-QKKXKWKRSA-N
has_related_synonym: Lac
has_related_synonym: Laktobiose
has_related_synonym: Laktose
has_related_synonym: Milchzucker
has_related_synonym: beta-D-Gal-(1->4)-D-Glc
has_related_synonym: beta-D-Galp-(1->4)-D-Glcp
has_related_synonym: beta-Gal1,4-Glc
has_related_synonym: lactobiose
has_related_synonym: milk sugar
id: CHEBI:17716

gentamycin
type: Class
subclass of: molecular entity
definition: Any of a group of aminoglycoside antibiotics produced by fermentation of some Micromonospora spp.
imported from: chebi.owl
imported from: vo.owl
has_alternative_id: CHEBI:14293
has_alternative_id: CHEBI:24206
has_alternative_id: CHEBI:24212
has_alternative_id: CHEBI:5306
database_cross_reference: DrugBank:DB00798
database_cross_reference: KEGG COMPOUND:1403-66-3
database_cross_reference: KEGG COMPOUND:C00505
has_exact_synonym: 4,6-diamino-3-[3-deoxy-4-C-methyl-3-(methylamino)pentopyranosyloxy]-2-hydroxycyclohexyl 2-amino-2,3,4,6,7-pentadeoxy-6-(methylamino)heptopyranoside
has_obo_namespace: chebi_ontology
has_related_synonym: Gentamicin
has_related_synonym: gentamicin
has_related_synonym: gentamycins
id: CHEBI:17833

sucrose
type: Class
subclass of: molecular entity
definition: Sucrose is a disaccharide formed by glucose and fructose units joined by an acetal oxygen bridge from hemiacetal of glucose to the hemiketal of the fructose.
imported from: chebi.owl
imported from: vo.owl
has_alternative_id: CHEBI:15128
has_alternative_id: CHEBI:26812
has_alternative_id: CHEBI:45795
has_alternative_id: CHEBI:9314
database_cross_reference: Beilstein:90825
database_cross_reference: ChemIDplus:57-50-1
database_cross_reference: CiteXplore:11021636
database_cross_reference: CiteXplore:11093712
database_cross_reference: CiteXplore:11111003
database_cross_reference: CiteXplore:12065720
database_cross_reference: CiteXplore:12706980
database_cross_reference: CiteXplore:13508893
database_cross_reference: CiteXplore:15291457
database_cross_reference: CiteXplore:15660210
database_cross_reference: CiteXplore:15792978
database_cross_reference: CiteXplore:15845855
database_cross_reference: CiteXplore:16228482
database_cross_reference: CiteXplore:16304615
database_cross_reference: CiteXplore:16313996
database_cross_reference: CiteXplore:16525719
database_cross_reference: CiteXplore:16660545
database_cross_reference: CiteXplore:16663947
database_cross_reference: CiteXplore:16665852
database_cross_reference: CiteXplore:17233733
database_cross_reference: CiteXplore:17439666
database_cross_reference: CiteXplore:17597061
database_cross_reference: CiteXplore:18625236
database_cross_reference: CiteXplore:19199566
database_cross_reference: CiteXplore:19726178
database_cross_reference: CiteXplore:21703290
database_cross_reference: CiteXplore:21972845
database_cross_reference: CiteXplore:22085755
database_cross_reference: CiteXplore:22311778
database_cross_reference: CiteXplore:22404833
database_cross_reference: CiteXplore:22751876
database_cross_reference: DrugBank:DB02772
database_cross_reference: Gmelin:97695
database_cross_reference: HMDB:HMDB00258
database_cross_reference: KEGG COMPOUND:57-50-1
database_cross_reference: KEGG COMPOUND:C00089
database_cross_reference: KEGG DRUG:D00025
database_cross_reference: KEGG GLYCAN:G00370
database_cross_reference: MetaCyc:SUCROSE
database_cross_reference: NIST Chemistry WebBook:57-50-1
database_cross_reference: PDBeChem:SUC
database_cross_reference: Reaxys:1435311
database_cross_reference: Reaxys:90825
database_cross_reference: Wikipedia:Sucrose
has_exact_synonym: SUCROSE
has_exact_synonym: Sucrose
has_exact_synonym: beta-D-fructofuranosyl alpha-D-glucopyranoside
has_obo_namespace: chebi_ontology
has_related_synonym: 1-alpha-D-Glucopyranosyl-2-beta-D-fructofuranoside
has_related_synonym: C12H22O11
has_related_synonym: Cane sugar
has_related_synonym: InChI=1S/C12H22O11/c13-1-4-6(16)8(18)9(19)11(21-4)23-12(3-15)10(20)7(17)5(2-14)22-12/h4-11,13-20H,1-3H2/t4-,5-,6-,7-,8+,9-,10+,11-,12+/m1/s1
has_related_synonym: InChIKey=CZMRCDWAGMRECN-UGDNZRGBSA-N
has_related_synonym: Saccharose
has_related_synonym: Sacharose
has_related_synonym: White sugar
has_related_synonym: beta-D-Fruf-(2<->1)-alpha-D-Glcp
has_related_synonym: sacarosa
has_related_synonym: table sugar
id: CHEBI:17992

molecular entity
type: Class
subclass of: material entity
definition: Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.
imported from: chebi.owl
imported from: vo.owl
has_exact_synonym: molecular entity
has_obo_namespace: chebi_ontology
has_related_synonym: entidad molecular
has_related_synonym: entidades moleculares
has_related_synonym: entite moleculaire
has_related_synonym: molecular entities
has_related_synonym: molekulare Entitaet
id: CHEBI:23367

aspartame
type: Class
subclass of: molecular entity
definition: A dipeptide that has formula C14H18N2O5.
imported from: chebi.owl
imported from: vo.owl
database_cross_reference: Beilstein:2223850
database_cross_reference: ChemIDplus:22839-47-0
database_cross_reference: DrugBank:DB00168
database_cross_reference: KEGG COMPOUND:C11045
database_cross_reference: KEGG DRUG:D02381
has_exact_synonym: Aspartame
has_exact_synonym: methyl L-alpha-aspartyl-L-phenylalaninate
has_obo_namespace: chebi_ontology
has_related_synonym: 1-methyl N-L-alpha-aspartyl-L-phenylalanate
has_related_synonym: 3-Amino-N-(alpha-carboxyphenethyl)succinamic acid N-methyl ester
has_related_synonym: 3-Amino-N-(alpha-methoxycarbonylphenethyl) succinamic acid
has_related_synonym: Asp-phe-ome
has_related_synonym: Aspartylphenylalanine methyl ester
has_related_synonym: C14H18N2O5
has_related_synonym: InChI=1S/C14H18N2O5/c1-21-14(20)11(7-9-5-3-2-4-6-9)16-13(19)10(15)8-12(17)18/h2-6,10-11H,7-8,15H2,1H3,(H,16,19)(H,17,18)/t10-,11-/m0/s1
has_related_synonym: InChIKey=IAOZJIPTCAWIRG-QWRGUYRKSA-N
has_related_synonym: L-Aspartyl-L-phenylalanine methyl ester
has_related_synonym: aspartam
has_related_synonym: aspartame
has_related_synonym: aspartamo
has_related_synonym: aspartamum
id: CHEBI:2877

glucitol
type: Class
subclass of: molecular entity
imported from: chebi.owl
imported from: vo.owl
has_alternative_id: CHEBI:15093
has_alternative_id: CHEBI:26724
has_alternative_id: CHEBI:26726
has_alternative_id: CHEBI:33795
has_alternative_id: CHEBI:33796
has_alternative_id: CHEBI:9201
database_cross_reference: Beilstein:1721909
database_cross_reference: Gmelin:83165
has_exact_synonym: glucitol
has_obo_namespace: chebi_ontology
has_related_synonym: C6H14O6
has_related_synonym: Sorbitol
has_related_synonym: gulitol
has_related_synonym: rel-(2R,3R,4R,5S)-hexane-1,2,3,4,5,6-hexol
has_related_synonym: sorbitol
id: CHEBI:30911

dextran
type: Class
subclass of: molecular entity
definition: A (1->6)-alpha-D-glucan which has extra branching consisting of (1->2), (1->3) or (1->4) linkages.
imported from: chebi.owl
imported from: vo.owl
database_cross_reference: ChemIDplus:9004-54-0
database_cross_reference: CiteXplore:8154046
database_cross_reference: KEGG DRUG:D00060
has_obo_namespace: chebi_ontology
has_related_synonym: (C12H20O10)n
has_related_synonym: Dextran 40
has_related_synonym: Dextran 70
has_related_synonym: dextran
has_related_synonym: dextrano
has_related_synonym: dextrans
has_related_synonym: dextranum
id: CHEBI:52071

monosodium glutamate
type: Class
subclass of: molecular entity
definition: An organic sodium salt that is the monosodium salt of glutamic acid.
imported from: chebi.owl
imported from: vo.owl
database_cross_reference: CiteXplore:22293291
database_cross_reference: Reaxys:17003240
has_exact_synonym: sodium 2-azaniumylpentanedioate
has_obo_namespace: chebi_ontology
has_related_synonym: C5H8NNaO4
has_related_synonym: InChI=1S/C5H9NO4.Na/c6-3(5(9)10)1-2-4(7)8;/h3H,1-2,6H2,(H,7,8)(H,9,10);/q;+1/p-1
has_related_synonym: InChIKey=LPUQAYUQRXPFSQ-UHFFFAOYSA-M
has_related_synonym: MSG
has_related_synonym: [Na+].[NH3+]C(CCC([O-])=O)C([O-])=O
has_related_synonym: sodium 2-ammoniopentanedioate
has_related_synonym: sodium glutamate
id: CHEBI:64220

neomycin
type: Class
subclass of: molecular entity
definition: A broad-spectrum highly toxic antibiotic or mixture of antibiotics produced by a streptomyces (Streptomyces fradiae) and used medically especially to treat local infections.
imported from: chebi.owl
imported from: vo.owl
database_cross_reference: DrugBank:DB00994
database_cross_reference: KEGG COMPOUND:C00384
has_exact_synonym: Neomycin
has_obo_namespace: chebi_ontology
id: CHEBI:7507

thimerosal
type: Class
subclass of: molecular entity
definition: An organomercury compound (approximately 49% mercury by weight) used as an antiseptic and antifungal agent.
imported from: chebi.owl
imported from: vo.owl
database_cross_reference: Beilstein:8169555
database_cross_reference: ChemIDplus:54-64-8
database_cross_reference: CiteXplore:18837732
database_cross_reference: CiteXplore:21616561
database_cross_reference: Gmelin:1677155
database_cross_reference: KEGG COMPOUND:C08044
has_exact_synonym: Thimerosal
has_exact_synonym: sodium [(2-carboxylatophenyl)sulfanyl](ethyl)mercurate(1-)
has_exact_synonym: sodium ethyl[2-(sulfanyl-kappaS)benzoato(2-)]mercurate(1-)
has_obo_namespace: chebi_ontology
has_related_synonym: C9H9HgNaO2S
has_related_synonym: C9H9HgO2S.Na
has_related_synonym: InChI=1S/C7H6O2S.C2H5.Hg.Na/c8-7(9)5-3-1-2-4-6(5)10;1-2;;/h1-4,10H,(H,8,9);1H2,2H3;;/q;;2*+1/p-2
has_related_synonym: InChIKey=RTKIYNMVFMVABJ-UHFFFAOYSA-L
has_related_synonym: Merthiolate
has_related_synonym: Thiomersal
has_related_synonym: [(o-carboxyphenyl)thio]ethylmercury sodium salt
has_related_synonym: [Na+].CC[Hg]Sc1ccccc1C([O-])=O
has_related_synonym: ethyl(2-mercaptobenzoato-S)mercury sodium salt
has_related_synonym: ethylmercurithiosalicylate sodium
has_related_synonym: mercurothiolate
has_related_synonym: o-(ethylmercurithio)benzoic acid sodium salt
has_related_synonym: sodium ethylmercurithiosalicylate
has_related_synonym: thiomersalate
id: CHEBI:9546

cardiomyopathy
type: Class
subclass of: heart disease
definition: A heart disease and a myopathy that is characterized by deterioration of the function of the heart muscle.
imported from: doid.owl
created by: lschriml
creation date: 2012-01-03T02:54:11Z
database_cross_reference: ICD10CM:I42
database_cross_reference: ICD10CM:I42.9
database_cross_reference: ICD10CM:I51.5
database_cross_reference: ICD9CM:425
database_cross_reference: ICD9CM:425.9
database_cross_reference: MSH:D009202
database_cross_reference: NCI:C34830
database_cross_reference: NCI:C53654
database_cross_reference: SNOMEDCT_US_2015_03_01:155351008
database_cross_reference: SNOMEDCT_US_2015_03_01:155353006
database_cross_reference: SNOMEDCT_US_2015_03_01:195035002
database_cross_reference: SNOMEDCT_US_2015_03_01:195037005
database_cross_reference: SNOMEDCT_US_2015_03_01:20072003
database_cross_reference: SNOMEDCT_US_2015_03_01:266244008
database_cross_reference: SNOMEDCT_US_2015_03_01:266301006
database_cross_reference: SNOMEDCT_US_2015_03_01:57809008
database_cross_reference: SNOMEDCT_US_2015_03_01:85898001
database_cross_reference: SNOMEDCT_US_2015_03_01:89461002
database_cross_reference: SNOMEDCT_US_2015_03_01:89600009
database_cross_reference: UMLS_CUI:C0033141
database_cross_reference: UMLS_CUI:C0036529
database_cross_reference: UMLS_CUI:C0878544
has_exact_synonym: Cardiomyopathies
has_obo_namespace: disease_ontology
id: DOID:0050700
comment: MSH:D009202 added from NeuroDevNet [WAK].

lymphoma
type: Class
subclass of: cancer
definition: A hematologic cancer that affects lymphocytes that reside in the lymphatic system and in blood-forming organs.
imported from: doid.owl
has_alternative_id: DOID:1033
has_alternative_id: DOID:353
database_cross_reference: ICD10CM:C85.9
database_cross_reference: MSH:D008223
database_cross_reference: NCI:C3208
database_cross_reference: NCI:C7065
database_cross_reference: SNOMEDCT_US_2015_03_01:115244002
database_cross_reference: SNOMEDCT_US_2015_03_01:118600007
database_cross_reference: SNOMEDCT_US_2015_03_01:134218000
database_cross_reference: SNOMEDCT_US_2015_03_01:188676008
database_cross_reference: SNOMEDCT_US_2015_03_01:188694002
database_cross_reference: SNOMEDCT_US_2015_03_01:188695001
database_cross_reference: SNOMEDCT_US_2015_03_01:188704004
database_cross_reference: SNOMEDCT_US_2015_03_01:189959002
database_cross_reference: SNOMEDCT_US_2015_03_01:189965002
database_cross_reference: SNOMEDCT_US_2015_03_01:21964009
database_cross_reference: SNOMEDCT_US_2015_03_01:269627002
database_cross_reference: SNOMEDCT_US_2015_03_01:414628006
database_cross_reference: UMLS_CUI:C0024299
database_cross_reference: UMLS_CUI:C0598798
has_exact_synonym: lymphoid cancer
has_obo_namespace: disease_ontology
id: DOID:0060058
in_subset: DO cancer slim

heart disease
type: Class
subclass of: disease
definition: A cardiovascular system disease that involves the heart.
imported from: doid.owl
database_cross_reference: ICD10CM:I51.9
database_cross_reference: ICD9CM:429.9
database_cross_reference: MSH:D006331
database_cross_reference: NCI:C3079
database_cross_reference: SNOMEDCT_US_2015_03_01:155263000
database_cross_reference: SNOMEDCT_US_2015_03_01:194707003
database_cross_reference: SNOMEDCT_US_2015_03_01:195152001
database_cross_reference: SNOMEDCT_US_2015_03_01:266275004
database_cross_reference: SNOMEDCT_US_2015_03_01:266311004
database_cross_reference: SNOMEDCT_US_2015_03_01:56265001
database_cross_reference: UMLS_CUI:C0018799
has_obo_namespace: disease_ontology
id: DOID:114

hypersensitivity reaction type I disease
type: Class
subclass of: disease
definition: An immune system disease that is an exaggerated immune response to allergens, such as insect venom, dust mites, pollen, pet dander, drugs or some foods.
imported from: doid.owl
database_cross_reference: ICD10CM:T78.40
database_cross_reference: MSH:D006967
database_cross_reference: NCI:C3114
database_cross_reference: SNOMEDCT_US_2015_03_01:106190000
database_cross_reference: SNOMEDCT_US_2015_03_01:127072000
database_cross_reference: SNOMEDCT_US_2015_03_01:157754004
database_cross_reference: SNOMEDCT_US_2015_03_01:157758001
database_cross_reference: SNOMEDCT_US_2015_03_01:212998004
database_cross_reference: SNOMEDCT_US_2015_03_01:212999007
database_cross_reference: SNOMEDCT_US_2015_03_01:21957007
database_cross_reference: SNOMEDCT_US_2015_03_01:257550005
database_cross_reference: SNOMEDCT_US_2015_03_01:269284003
database_cross_reference: SNOMEDCT_US_2015_03_01:269432007
database_cross_reference: SNOMEDCT_US_2015_03_01:274211000
database_cross_reference: SNOMEDCT_US_2015_03_01:282092005
database_cross_reference: SNOMEDCT_US_2015_03_01:418168000
database_cross_reference: SNOMEDCT_US_2015_03_01:418634005
database_cross_reference: SNOMEDCT_US_2015_03_01:418925002
database_cross_reference: SNOMEDCT_US_2015_03_01:421668005
database_cross_reference: SNOMEDCT_US_2015_03_01:421961002
database_cross_reference: SNOMEDCT_US_2015_03_01:91232002
database_cross_reference: UMLS_CUI:C0020517
has_exact_synonym: allergy
has_exact_synonym: hypersensitivity
has_obo_namespace: disease_ontology
id: DOID:1205

leukemia
type: Class
subclass of: cancer
definition: A cancer that affects the blood or bone marrow characterized by an abnormal proliferation of blood cells.
imported from: doid.owl
has_alternative_id: DOID:9145
database_cross_reference: ICD10CM:C95
database_cross_reference: ICD10CM:C95.9
database_cross_reference: ICD10CM:C95.90
database_cross_reference: ICD9CM:208
database_cross_reference: ICD9CM:208.9
database_cross_reference: MSH:D007938
database_cross_reference: NCI:C3161
database_cross_reference: SNOMEDCT_US_2015_03_01:154598008
database_cross_reference: SNOMEDCT_US_2015_03_01:188762002
database_cross_reference: SNOMEDCT_US_2015_03_01:188767008
database_cross_reference: SNOMEDCT_US_2015_03_01:190024009
database_cross_reference: SNOMEDCT_US_2015_03_01:190025005
database_cross_reference: SNOMEDCT_US_2015_03_01:190029004
database_cross_reference: SNOMEDCT_US_2015_03_01:190071003
database_cross_reference: SNOMEDCT_US_2015_03_01:255049003
database_cross_reference: SNOMEDCT_US_2015_03_01:87163000
database_cross_reference: SNOMEDCT_US_2015_03_01:93143009
database_cross_reference: UMLS_CUI:C0023418
has_obo_namespace: disease_ontology
id: DOID:1240
in_subset: DO cancer slim

Guillain-Barre syndrome
type: Class
subclass of: hypersensitivity reaction type II disease
definition: An autoimmune disease of peripheral nervous system that causes body's immune system to attack part of the peripheral nervous system.
imported from: doid.owl
database_cross_reference: ICD10CM:G61.0
database_cross_reference: ICD9CM:357.0
database_cross_reference: MSH:D020275
database_cross_reference: NCI:C26790
database_cross_reference: OMIM:139393
database_cross_reference: SNOMEDCT_US_2015_03_01:128085000
database_cross_reference: SNOMEDCT_US_2015_03_01:129131007
database_cross_reference: SNOMEDCT_US_2015_03_01:155082001
database_cross_reference: SNOMEDCT_US_2015_03_01:193173004
database_cross_reference: SNOMEDCT_US_2015_03_01:193174005
database_cross_reference: SNOMEDCT_US_2015_03_01:193176007
database_cross_reference: SNOMEDCT_US_2015_03_01:267707000
database_cross_reference: SNOMEDCT_US_2015_03_01:40956001
database_cross_reference: UMLS_CUI:C0018378
has_exact_synonym: Guillain-Barre syndrome (disorder)
has_exact_synonym: Infectious neuronitis (disorder)
has_exact_synonym: Post-infectious polyneuritis (disorder)
has_exact_synonym: Postinfectious polyneuritis
has_exact_synonym: acute Infective Polyneuritis
has_exact_synonym: acute inf. polyneuritis
has_exact_synonym: acute infective polyneuritis
has_exact_synonym: acute infective polyneuritis (disorder)
has_exact_synonym: acute infective polyneuritis NOS (disorder)
has_exact_synonym: acute postinfectious polyneuropathy
has_obo_namespace: disease_ontology
id: DOID:12842
comment: OMIM mapping confirmed by DO. [SN].

diarrhea
type: Class
subclass of: disease
definition: A gastrointestinal system disease described as the condition of having frequent loose or liquid bowel movements. Acute diarrhea is a common cause of death in developing countries and the second most common cause of infant deaths worldwide. The loss of fluids through diarrhea can cause severe dehydration which is one cause of death in diarrhea sufferers. Along with water, sufferers also lose dangerous amounts of important salts, electrolytes, and other nutrients. There are at least four types of diarrhea: secretory diarrhea, osmotic diarrhea, motility-related diarrhea, and inflammatory diarrhea.
imported from: doid.owl
has_alternative_id: DOID:0050006
database_cross_reference: ICD9CM:009.2
database_cross_reference: MSH:D004403
database_cross_reference: SNOMEDCT_US_2015_03_01:111939009
database_cross_reference: SNOMEDCT_US_2015_03_01:154268000
database_cross_reference: SNOMEDCT_US_2015_03_01:154279005
database_cross_reference: SNOMEDCT_US_2015_03_01:186165000
database_cross_reference: SNOMEDCT_US_2015_03_01:186167008
database_cross_reference: SNOMEDCT_US_2015_03_01:19213003
database_cross_reference: SNOMEDCT_US_2015_03_01:236076004
database_cross_reference: SNOMEDCT_US_2015_03_01:266173000
database_cross_reference: SNOMEDCT_US_2015_03_01:266180003
database_cross_reference: UMLS_CUI:C0013369
has_obo_namespace: disease_ontology
has_related_synonym: diarrhea of presumed infectious origin
has_related_synonym: diarrhoea
id: DOID:13250
in_subset: GOLD

thrombocytopenia
type: Class
subclass of: disease
definition: A blood platelet disease characterized by low a platelet count in the blood.
imported from: doid.owl
database_cross_reference: ICD10CM:D69.6
database_cross_reference: ICD9CM:287.5
database_cross_reference: MSH:D013921
database_cross_reference: NCI:C3408
database_cross_reference: OMIM:188000
database_cross_reference: OMIM:273900
database_cross_reference: OMIM:300367
database_cross_reference: OMIM:313900
database_cross_reference: OMIM:612004
database_cross_reference: ORDO:852
database_cross_reference: SNOMEDCT_US_2015_03_01:142969008
database_cross_reference: SNOMEDCT_US_2015_03_01:154827000
database_cross_reference: SNOMEDCT_US_2015_03_01:165556002
database_cross_reference: SNOMEDCT_US_2015_03_01:191326009
database_cross_reference: SNOMEDCT_US_2015_03_01:302215000
database_cross_reference: SNOMEDCT_US_2015_03_01:415116008
database_cross_reference: SNOMEDCT_US_2015_03_01:70786006
database_cross_reference: UMLS_CUI:C0040034
has_obo_namespace: disease_ontology
id: DOID:1588
in_subset: DO MGI slim
comment: Xref MGI.

cancer
type: Class
subclass of: disposition
subclass of: disease
definition: A disease of cellular proliferation that is malignant and primary, characterized by uncontrolled cellular proliferation, local cell invasion and metastasis.
imported from: doid.owl
imported from: vo.owl
database_cross_reference: ICD10CM:C80
database_cross_reference: ICD10CM:C80.1
database_cross_reference: ICD9CM:199
database_cross_reference: ICD9CM:239.4
database_cross_reference: MSH:D009369
database_cross_reference: NCI:C9305
database_cross_reference: SNOMEDCT_2010_1_31:189535002
database_cross_reference: SNOMEDCT_US_2015_03_01:154432008
database_cross_reference: SNOMEDCT_US_2015_03_01:154433003
database_cross_reference: SNOMEDCT_US_2015_03_01:154577008
database_cross_reference: SNOMEDCT_US_2015_03_01:187597000
database_cross_reference: SNOMEDCT_US_2015_03_01:188475001
database_cross_reference: SNOMEDCT_US_2015_03_01:188482002
database_cross_reference: SNOMEDCT_US_2015_03_01:190150006
database_cross_reference: SNOMEDCT_US_2015_03_01:269513004
database_cross_reference: SNOMEDCT_US_2015_03_01:269623003
database_cross_reference: SNOMEDCT_US_2015_03_01:269626006
database_cross_reference: SNOMEDCT_US_2015_03_01:269634000
database_cross_reference: SNOMEDCT_US_2015_03_01:363346000
database_cross_reference: SNOMEDCT_US_2015_03_01:38807002
database_cross_reference: UMLS_CUI:C0006826
database_cross_reference: UMLS_CUI:C0027639
has_exact_synonym: malignant neoplasm
has_exact_synonym: malignant tumor
has_exact_synonym: primary cancer
has_obo_namespace: disease_ontology
id: DOID:162
comment: Updating out dated UMLS CUI.

transient cerebral ischemia
type: Class
subclass of: disease
imported from: doid.owl
has_alternative_id: DOID:2315
database_cross_reference: ICD10CM:G45.9
database_cross_reference: ICD9CM:435.8
database_cross_reference: MSH:D002546
database_cross_reference: NCI:C50781
database_cross_reference: SNOMEDCT_US_2015_03_01:155404005
database_cross_reference: SNOMEDCT_US_2015_03_01:195196001
database_cross_reference: SNOMEDCT_US_2015_03_01:195207009
database_cross_reference: SNOMEDCT_US_2015_03_01:266257000
database_cross_reference: SNOMEDCT_US_2015_03_01:266314007
database_cross_reference: SNOMEDCT_US_2015_03_01:313242003
database_cross_reference: SNOMEDCT_US_2015_03_01:38609002
database_cross_reference: UMLS_CUI:C0007787
database_cross_reference: UMLS_CUI:C0155728
has_exact_synonym: TIA
has_exact_synonym: TIA - Transient ischaemic attack
has_exact_synonym: TRANSIENT ISCHEMIC ATTACK
has_exact_synonym: Transient cerebral ischaemia
has_exact_synonym: Transient cerebral ischaemia NOS
has_exact_synonym: Transient cerebral ischemia (disorder) [Ambiguous]
has_exact_synonym: Transient ischemic attacks (disorder)
has_exact_synonym: transient ischemic attack
has_obo_namespace: disease_ontology
id: DOID:224

anemia
type: Class
subclass of: disease
definition: A hematopoietic system disease that is characterized by a decrease in the normal number of red blood cells.
imported from: doid.owl
database_cross_reference: EFO:0004272
database_cross_reference: ICD10CM:D64.9
database_cross_reference: ICD9CM:285.9
database_cross_reference: MSH:D000740
database_cross_reference: NCI:C2869
database_cross_reference: SNOMEDCT_US_2015_03_01:154786001
database_cross_reference: SNOMEDCT_US_2015_03_01:154812000
database_cross_reference: SNOMEDCT_US_2015_03_01:191277004
database_cross_reference: SNOMEDCT_US_2015_03_01:267531008
database_cross_reference: SNOMEDCT_US_2015_03_01:271737000
database_cross_reference: SNOMEDCT_US_2015_03_01:64593003
database_cross_reference: UMLS_CUI:C0002871
has_exact_synonym: anaemia
has_obo_namespace: disease_ontology
id: DOID:2355
comment: PRISM.

agammaglobulinemia
type: Class
subclass of: disease
definition: A B cell deficiency that is caused by a reduction in all types of gamma globulins.
imported from: doid.owl
has_alternative_id: DOID:618
database_cross_reference: ICD10CM:D80.1
database_cross_reference: ICD9CM:279.00
database_cross_reference: MSH:D000361
database_cross_reference: NCI:C26931
database_cross_reference: OMIM:601495
database_cross_reference: OMIM:612692
database_cross_reference: OMIM:613500
database_cross_reference: OMIM:613501
database_cross_reference: OMIM:613502
database_cross_reference: OMIM:613506
database_cross_reference: OMIM:615214
database_cross_reference: SNOMEDCT_US_2015_03_01:119249001
database_cross_reference: SNOMEDCT_US_2015_03_01:119250001
database_cross_reference: SNOMEDCT_US_2015_03_01:190977001
database_cross_reference: SNOMEDCT_US_2015_03_01:190978006
database_cross_reference: SNOMEDCT_US_2015_03_01:267512002
database_cross_reference: SNOMEDCT_US_2015_03_01:81282009
database_cross_reference: UMLS_CUI:C0001768
database_cross_reference: UMLS_CUI:C0086438
has_exact_synonym: IGHM
has_exact_synonym: hypogammaglobulinemia
has_exact_synonym: mu heavy chain deficiency
has_obo_namespace: disease_ontology
id: DOID:2583
comment: OMIM mapping confirmed by DO. [SN].

dermatitis
type: Class
subclass of: disease
definition: A skin disease characterized by itchy, erythematous, vesicular, weeping and crusting patches of skin.
imported from: doid.owl
has_alternative_id: DOID:8614
has_alternative_id: DOID:8917
database_cross_reference: ICD10CM:L30.9
database_cross_reference: MSH:D003872
database_cross_reference: NCI:C2983
database_cross_reference: SNOMEDCT_US_2015_03_01:156358005
database_cross_reference: SNOMEDCT_US_2015_03_01:156388001
database_cross_reference: SNOMEDCT_US_2015_03_01:182782007
database_cross_reference: SNOMEDCT_US_2015_03_01:200884006
database_cross_reference: SNOMEDCT_US_2015_03_01:238538009
database_cross_reference: SNOMEDCT_US_2015_03_01:267847004
database_cross_reference: SNOMEDCT_US_2015_03_01:267856007
database_cross_reference: SNOMEDCT_US_2015_03_01:43116000
database_cross_reference: SNOMEDCT_US_2015_03_01:4979002
database_cross_reference: UMLS_CUI:C0011603
has_exact_synonym: eczema
has_exact_synonym: skin inflammation
has_obo_namespace: disease_ontology
id: DOID:2723

keratosis follicularis
type: Class
subclass of: disease
imported from: doid.owl
database_cross_reference: ICD10CM:E50.8
database_cross_reference: MSH:D007644
database_cross_reference: NCI:C84665
database_cross_reference: OMIM:124200
database_cross_reference: SNOMEDCT_US_2015_03_01:157017000
database_cross_reference: SNOMEDCT_US_2015_03_01:205582000
database_cross_reference: SNOMEDCT_US_2015_03_01:240633005
database_cross_reference: SNOMEDCT_US_2015_03_01:268355000
database_cross_reference: SNOMEDCT_US_2015_03_01:48611009
database_cross_reference: UMLS_CUI:C0022595
has_exact_synonym: DARIER-WHITE DISEASE
has_exact_synonym: Darier's disease
has_exact_synonym: Keratosis follicularis (disorder)
has_obo_namespace: disease_ontology
id: DOID:2734
comment: OMIM mapping confirmed by DO. [SN].

asthma
type: Class
subclass of: disease
definition: A bronchial disease that is characterized by chronic inflammation and narrowing of the airways, which is caused by a combination of environmental and genetic factors. The disease has_symptom recurring periods of wheezing (a whistling sound while breathing), has_symptom chest tightness, has_symptom shortness of breath, has_symptom mucus production and has_symptom coughing. The symptoms appear due to a variety of triggers such as allergens, irritants, respiratory infections, weather changes, exercise, stress, reflux disease, medications, foods and emotional anxiety.
imported from: doid.owl
has_alternative_id: DOID:12703
has_alternative_id: DOID:13829
has_alternative_id: DOID:13830
has_alternative_id: DOID:2840
has_alternative_id: DOID:5783
database_cross_reference: EFO:0000270
database_cross_reference: ICD10CM:J45
database_cross_reference: ICD10CM:J45.90
database_cross_reference: ICD10CM:J45.909
database_cross_reference: ICD9CM:493
database_cross_reference: ICD9CM:493.9
database_cross_reference: KEGG:05310
database_cross_reference: MSH:D001249
database_cross_reference: NCI:C28397
database_cross_reference: OMIM:600807
database_cross_reference: SNOMEDCT_US_2015_03_01:155574008
database_cross_reference: SNOMEDCT_US_2015_03_01:155579003
database_cross_reference: SNOMEDCT_US_2015_03_01:187687003
database_cross_reference: SNOMEDCT_US_2015_03_01:195967001
database_cross_reference: SNOMEDCT_US_2015_03_01:195979001
database_cross_reference: SNOMEDCT_US_2015_03_01:195983001
database_cross_reference: SNOMEDCT_US_2015_03_01:21341004
database_cross_reference: SNOMEDCT_US_2015_03_01:266365004
database_cross_reference: SNOMEDCT_US_2015_03_01:266398009
database_cross_reference: SNOMEDCT_US_2015_03_01:278517007
database_cross_reference: UMLS_CUI:C0004096
has_exact_synonym: Exercise induced asthma
has_exact_synonym: bronchial hyperreactivity
has_exact_synonym: chronic obstructive asthma
has_exact_synonym: chronic obstructive asthma with acute exacerbation
has_exact_synonym: chronic obstructive asthma with status asthmaticus
has_exact_synonym: exercise-induced asthma
has_obo_namespace: disease_ontology
id: DOID:2841
in_subset: DO MGI slim
comment: Xref MGI.

food allergy
type: Class
subclass of: hypersensitivity reaction type I disease
definition: A hypersensitivity reaction type I disease that is an abnormal response to a food, triggered by the body's immune system.
imported from: doid.owl
database_cross_reference: MSH:D005512
database_cross_reference: SNOMEDCT_US_2015_03_01:157801005
database_cross_reference: SNOMEDCT_US_2015_03_01:213018006
database_cross_reference: SNOMEDCT_US_2015_03_01:414285001
database_cross_reference: SNOMEDCT_US_2015_03_01:52332009
database_cross_reference: UMLS_CUI:C0016470
has_exact_synonym: food hypersensitivity
has_obo_namespace: disease_ontology
id: DOID:3044

chronic obstructive pulmonary disease
type: Class
subclass of: lung disease
imported from: doid.owl
has_alternative_id: DOID:11500
has_alternative_id: DOID:6144
database_cross_reference: EFO:0000341
database_cross_reference: ICD10CM:J44.9
database_cross_reference: MSH:D029424
database_cross_reference: NCI:C3199
database_cross_reference: SNOMEDCT_US_2015_03_01:10169006
database_cross_reference: SNOMEDCT_US_2015_03_01:13645005
database_cross_reference: SNOMEDCT_US_2015_03_01:155565006
database_cross_reference: SNOMEDCT_US_2015_03_01:155569000
database_cross_reference: SNOMEDCT_US_2015_03_01:155585005
database_cross_reference: SNOMEDCT_US_2015_03_01:155617000
database_cross_reference: SNOMEDCT_US_2015_03_01:195935004
database_cross_reference: SNOMEDCT_US_2015_03_01:195948000
database_cross_reference: SNOMEDCT_US_2015_03_01:196003006
database_cross_reference: SNOMEDCT_US_2015_03_01:413846005
database_cross_reference: UMLS_CUI:C0024117
has_exact_synonym: COLD (chronic obstructive lung disease)
has_exact_synonym: COPD
has_exact_synonym: chronic obstructive airway disease
has_exact_synonym: chronic obstructive lung disease
has_obo_namespace: disease_ontology
id: DOID:3083

thymoma
type: Class
subclass of: cancer
definition: A thymus cancer that derives_from epithelial cells located_in the thymus. The tumor cells in a thymoma look similar to the normal cells of the thymus, grow slowly, and rarely spread beyond the thymus.
imported from: doid.owl
database_cross_reference: MSH:D013945
database_cross_reference: NCI:C3411
database_cross_reference: SNOMEDCT_US_2015_03_01:128856005
database_cross_reference: SNOMEDCT_US_2015_03_01:189721001
database_cross_reference: SNOMEDCT_US_2015_03_01:444231005
database_cross_reference: UMLS_CUI:C0040100
has_obo_namespace: disease_ontology
id: DOID:3275
in_subset: DO cancer slim

disease
type: Class
subclass of: disposition
definition: A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
imported from: doid.owl
database_cross_reference: MSH:D004194
database_cross_reference: NCI:C2991
database_cross_reference: SNOMEDCT_US_2015_03_01:64572001
database_cross_reference: UMLS_CUI:C0012634
has_obo_namespace: disease_ontology
id: DOID:4

liver disease
type: Class
subclass of: disease
imported from: doid.owl
has_alternative_id: DOID:2164
has_alternative_id: DOID:2165
has_alternative_id: DOID:46
database_cross_reference: ICD10CM:K70-K77
database_cross_reference: ICD10CM:K76.9
database_cross_reference: ICD9CM:573.9
database_cross_reference: MSH:D008107
database_cross_reference: NCI:C3196
database_cross_reference: SNOMEDCT_US_2015_03_01:155807008
database_cross_reference: SNOMEDCT_US_2015_03_01:155817003
database_cross_reference: SNOMEDCT_US_2015_03_01:155822003
database_cross_reference: SNOMEDCT_US_2015_03_01:197375001
database_cross_reference: SNOMEDCT_US_2015_03_01:197551000
database_cross_reference: SNOMEDCT_US_2015_03_01:235856003
database_cross_reference: SNOMEDCT_US_2015_03_01:266535008
database_cross_reference: SNOMEDCT_US_2015_03_01:62857009
database_cross_reference: UMLS_CUI:C0023895
has_exact_synonym: disorder of liver (disorder)
has_exact_synonym: hepatic disorder
has_obo_namespace: disease_ontology
id: DOID:409

hypersensitivity reaction type II disease
type: Class
subclass of: disease
definition: An immune system disease that is an overactive immune response of the body against substances and tissues normally present in the body resulting from an abnormal functioning of the immune system that results in the production of antibodies or T cell directed against the host tissues.
imported from: doid.owl
database_cross_reference: ICD9CM:720
database_cross_reference: UMLS_CUI:C0003089
has_exact_synonym: autoimmune disease
has_obo_namespace: disease_ontology
id: DOID:417
in_subset: DO MGI slim
comment: Xref MGI.

egg allergy
type: Class
subclass of: food allergy
definition: A food allergy that is an allergy or hypersensitivity to dietary substances from the yolk or whites of eggs, causing an overreaction of the immune system which may lead to severe physical symptoms.
imported from: doid.owl
database_cross_reference: MSH:D021181
database_cross_reference: SNOMEDCT_US_2015_03_01:157802003
database_cross_reference: SNOMEDCT_US_2015_03_01:213019003
database_cross_reference: SNOMEDCT_US_2015_03_01:91930004
database_cross_reference: UMLS_CUI:C0559469
has_exact_synonym: Allergy to eggs (disorder)
has_exact_synonym: Egg allergy
has_obo_namespace: disease_ontology
id: DOID:4377

thymus gland disease
type: Class
subclass of: disease
imported from: doid.owl
has_alternative_id: DOID:11024
database_cross_reference: ICD10CM:E32
database_cross_reference: ICD10CM:E32.9
database_cross_reference: ICD9CM:254
database_cross_reference: ICD9CM:254.9
database_cross_reference: NCI:C26962
database_cross_reference: SNOMEDCT_US_2015_03_01:154703006
database_cross_reference: SNOMEDCT_US_2015_03_01:190500009
database_cross_reference: SNOMEDCT_US_2015_03_01:20673009
database_cross_reference: SNOMEDCT_US_2015_03_01:267482009
database_cross_reference: UMLS_CUI:C0154199
has_exact_synonym: disease of thymus gland
has_obo_namespace: disease_ontology
id: DOID:533

kidney disease
type: Class
subclass of: disease
definition: A urinary system disease that is located_in the kidney.
imported from: doid.owl
database_cross_reference: EFO:0003086
database_cross_reference: ICD10CM:N08
database_cross_reference: ICD10CM:N28.9
database_cross_reference: MSH:D007674
database_cross_reference: NCI:C3149
database_cross_reference: NCI:C34843
database_cross_reference: SNOMEDCT_US_2015_03_01:155871008
database_cross_reference: SNOMEDCT_US_2015_03_01:266612003
database_cross_reference: SNOMEDCT_US_2015_03_01:266624005
database_cross_reference: SNOMEDCT_US_2015_03_01:266627003
database_cross_reference: SNOMEDCT_US_2015_03_01:274108006
database_cross_reference: SNOMEDCT_US_2015_03_01:90708001
database_cross_reference: UMLS_CUI:C0022658
has_exact_synonym: nephropathy
has_obo_namespace: disease_ontology
id: DOID:557

myocardial infarction
type: Class
subclass of: disease
definition: A coronary artery disease characterized by myocardial cell death (myocardial necrosis) due to prolonged ischaemia.
imported from: doid.owl
database_cross_reference: EFO:0000612
database_cross_reference: ICD10CM:I21
database_cross_reference: ICD10CM:I22
database_cross_reference: MSH:D009203
database_cross_reference: NCI:C27996
database_cross_reference: OMIM:608446
database_cross_reference: OMIM:608557
database_cross_reference: SNOMEDCT_US_2015_03_01:155304006
database_cross_reference: SNOMEDCT_US_2015_03_01:194796000
database_cross_reference: SNOMEDCT_US_2015_03_01:22298006
database_cross_reference: SNOMEDCT_US_2015_03_01:233824008
database_cross_reference: SNOMEDCT_US_2015_03_01:266288001
database_cross_reference: SNOMEDCT_US_2015_03_01:66514008
database_cross_reference: UMLS_CUI:C0027051
has_exact_synonym: Myocardial infarct
has_exact_synonym: heart attack
has_obo_namespace: disease_ontology
id: DOID:5844
in_subset: DO MGI slim
comment: Xref MGI.

congestive heart failure
type: Class
subclass of: heart disease
definition: A heart disease that is characterized by any structural or functional cardiac disorder that impairs the ability of the heart to fill with or pump a sufficient amount of blood throughout the body.
imported from: doid.owl
has_alternative_id: DOID:395
database_cross_reference: ICD10CM:I50
database_cross_reference: ICD10CM:I50.9
database_cross_reference: ICD9CM:428
database_cross_reference: ICD9CM:428.0
database_cross_reference: ICD9CM:428.9
database_cross_reference: MSH:D006333
database_cross_reference: NCI:C3080
database_cross_reference: NCI:C50577
database_cross_reference: SNOMEDCT_US_2015_03_01:155374007
database_cross_reference: SNOMEDCT_US_2015_03_01:155375008
database_cross_reference: SNOMEDCT_US_2015_03_01:155377000
database_cross_reference: SNOMEDCT_US_2015_03_01:195108009
database_cross_reference: SNOMEDCT_US_2015_03_01:195117009
database_cross_reference: SNOMEDCT_US_2015_03_01:266248006
database_cross_reference: SNOMEDCT_US_2015_03_01:266308000
database_cross_reference: SNOMEDCT_US_2015_03_01:42343007
database_cross_reference: SNOMEDCT_US_2015_03_01:84114007
database_cross_reference: UMLS_CUI:C0018801
database_cross_reference: UMLS_CUI:C0018802
has_exact_synonym: CHF
has_exact_synonym: Cardiac Failure Congestive
has_exact_synonym: Congestive heart disease
has_exact_synonym: Weak heart
has_obo_namespace: disease_ontology
id: DOID:6000

acquired immunodeficiency syndrome
type: Class
subclass of: disease
definition: A Human immunodeficiency virus infectious disease that results_in reduction in the numbers of CD4-bearing helper T cells below 200 per µL of blood or 14% of all lymphocytes thereby rendering the subject highly vulnerable to life-threatening infections and cancers, has_material_basis_in Human immunodeficiency virus 1 or has_material_basis_in Human immunodeficiency virus 2, which are transmitted_by sexual contact, transmitted_by transfer of blood, semen, vaginal fluid, pre-ejaculate, or breast milk, transmitted_by congenital method, and transmitted_by contaminated needles. Opportunistic infections are common in people with AIDS.
imported from: doid.owl
database_cross_reference: EFO:0000765
database_cross_reference: ICD10CM:B20
database_cross_reference: MSH:D000163
database_cross_reference: NCI:C2851
database_cross_reference: OMIM:609423
database_cross_reference: SNOMEDCT_US_2015_03_01:186705005
database_cross_reference: SNOMEDCT_US_2015_03_01:186715004
database_cross_reference: SNOMEDCT_US_2015_03_01:234644008
database_cross_reference: SNOMEDCT_US_2015_03_01:266201009
database_cross_reference: SNOMEDCT_US_2015_03_01:62479008
database_cross_reference: UMLS_CUI:C0001175
has_exact_synonym: AIDS
has_exact_synonym: acquired Immune deficiency
has_obo_namespace: disease_ontology
has_related_synonym: acquired immune deficiency syndrome
id: DOID:635
in_subset: zoonotic infectious disease

acne
type: Class
subclass of: disease
definition: A sebaceous gland disease characterized by areas of blackheads, whiteheads, pimples, greasy skin, and possibly scarring.
imported from: doid.owl
has_alternative_id: DOID:9906
database_cross_reference: ICD10CM:L70
database_cross_reference: ICD10CM:L70.2
database_cross_reference: ICD10CM:L70.9
database_cross_reference: ICD9CM:706.0
database_cross_reference: MTH:217
database_cross_reference: NCI:C27195
database_cross_reference: OMIM:604324
database_cross_reference: SNOMEDCT_US_2015_03_01:11381005
database_cross_reference: SNOMEDCT_US_2015_03_01:201210008
database_cross_reference: SNOMEDCT_US_2015_03_01:201211007
database_cross_reference: SNOMEDCT_US_2015_03_01:201212000
database_cross_reference: SNOMEDCT_US_2015_03_01:201229002
database_cross_reference: SNOMEDCT_US_2015_03_01:201408008
database_cross_reference: SNOMEDCT_US_2015_03_01:23894009
database_cross_reference: SNOMEDCT_US_2015_03_01:267815009
database_cross_reference: UMLS_CUI:C0152249
database_cross_reference: UMLS_CUI:C0702166
has_exact_synonym: Acne varioliformis
has_exact_synonym: acne vulgaris
has_exact_synonym: frontalis acne
has_obo_namespace: disease_ontology
id: DOID:6543

cerebrovascular disease
type: Class
subclass of: disease
definition: An artery disease that is characterized by dysfunction of the blood vessels supplying the brain.
imported from: doid.owl
has_alternative_id: DOID:12214
has_alternative_id: DOID:3455
has_alternative_id: DOID:8231
database_cross_reference: EFO:0000712
database_cross_reference: ICD10CM:I60-I69
database_cross_reference: ICD10CM:I63.9
database_cross_reference: ICD10CM:I67.9
database_cross_reference: ICD9CM:430-438.99
database_cross_reference: ICD9CM:437.9
database_cross_reference: MSH:D002561
database_cross_reference: MSH:D020521
database_cross_reference: NCI:C2938
database_cross_reference: NCI:C3390
database_cross_reference: OMIM:601367
database_cross_reference: SNOMEDCT_US_2015_03_01:155388006
database_cross_reference: SNOMEDCT_US_2015_03_01:155405006
database_cross_reference: SNOMEDCT_US_2015_03_01:155412002
database_cross_reference: SNOMEDCT_US_2015_03_01:195208004
database_cross_reference: SNOMEDCT_US_2015_03_01:195249004
database_cross_reference: SNOMEDCT_US_2015_03_01:195595007
database_cross_reference: SNOMEDCT_US_2015_03_01:230690007
database_cross_reference: SNOMEDCT_US_2015_03_01:266312006
database_cross_reference: SNOMEDCT_US_2015_03_01:266315008
database_cross_reference: SNOMEDCT_US_2015_03_01:270883006
database_cross_reference: SNOMEDCT_US_2015_03_01:313267000
database_cross_reference: SNOMEDCT_US_2015_03_01:62914000
database_cross_reference: SNOMEDCT_US_2015_03_01:82797006
database_cross_reference: UMLS_CUI:C0007820
database_cross_reference: UMLS_CUI:C0038454
has_exact_synonym: CVA (cerebral vascular accident)
has_exact_synonym: Cerebrovascular accident (disorder)
has_exact_synonym: cerebrovascular accident
has_exact_synonym: cerebrovascular disorder
has_exact_synonym: stroke
has_obo_namespace: disease_ontology
id: DOID:6713
comment: OMIM mapping confirmed by DO. [SN].

ankylosing spondylitis
type: Class
subclass of: disease
definition: A bone inflammation disease that results_in inflammation in the joints of the spine and pelvis. The disease has_symptom pain, has_symptom stiffness in the spine, has_symptom stiffness in the neck, has_symptom stiffness in the hips, has_symptom stiffness in the jaw and has_symptom stiffness in the rib cage.
imported from: doid.owl
database_cross_reference: EFO:0003898
database_cross_reference: ICD10CM:M45
database_cross_reference: ICD9CM:720.0
database_cross_reference: MSH:D013167
database_cross_reference: NCI:C84564
database_cross_reference: ORDO:825
database_cross_reference: SNOMEDCT_US_2015_03_01:156619005
database_cross_reference: SNOMEDCT_US_2015_03_01:9631008
database_cross_reference: UMLS_CUI:C0038013
has_exact_synonym: Bekhterev syndrome
has_exact_synonym: Bekhterev's disease
has_exact_synonym: Marie-Strumpell disease
has_obo_namespace: disease_ontology
id: DOID:7147

rheumatoid arthritis
type: Class
subclass of: disease
definition: An arthritis that is an autoimmune disease which attacks healthy cells and tissue located_in joint.
imported from: doid.owl
database_cross_reference: EFO:0000685
database_cross_reference: ICD10CM:M06.9
database_cross_reference: ICD9CM:714.0
database_cross_reference: KEGG:05323
database_cross_reference: MSH:D001172
database_cross_reference: NCI:C27206
database_cross_reference: NCI:C2884
database_cross_reference: OMIM:180300
database_cross_reference: SNOMEDCT_US_2015_03_01:156471009
database_cross_reference: SNOMEDCT_US_2015_03_01:156481008
database_cross_reference: SNOMEDCT_US_2015_03_01:287010008
database_cross_reference: SNOMEDCT_US_2015_03_01:69896004
database_cross_reference: UMLS_CUI:C0003873
has_exact_synonym: Arthritis or polyarthritis, rheumatic
has_exact_synonym: atrophic Arthritis
has_obo_namespace: disease_ontology
id: DOID:7148
comment: OMIM mapping confirmed by DO. [SN].

lung disease
type: Class
subclass of: disease
definition: A lower respiratory tract disease in which the function of the lungs is adversely affected by narrowing or blockage of the airways resulting in poor air flow, a loss of elasticity in the lungs that produces a decrease in the total volume of air that the lungs are able to hold, and clotting, scarring, or inflammation of the blood vessels that affect the ability of the lungs to take up oxygen and to release carbon dioxide.
imported from: doid.owl
has_alternative_id: DOID:11894
has_alternative_id: DOID:11895
has_alternative_id: DOID:29
has_alternative_id: DOID:766
database_cross_reference: ICD10CM:J98.4
database_cross_reference: MSH:D008171
database_cross_reference: NCI:C3198
database_cross_reference: SNOMEDCT_US_2015_03_01:196164004
database_cross_reference: SNOMEDCT_US_2015_03_01:19829001
database_cross_reference: SNOMEDCT_US_2015_03_01:266374002
database_cross_reference: UMLS_CUI:C0024115
has_exact_synonym: Non-neoplastic pulmonary disorder
has_exact_synonym: non-neoplastic lung disorder
has_obo_namespace: disease_ontology
id: DOID:850
comment: Updating out dated CUI and removing lung abscess as a synonym.

impetigo
type: Class
subclass of: dermatitis
definition: A pyoderma consisting of three forms of skin lesions having either a thick, adherent, recurrent, dirty yellow crust with an erythematous margin (common or superficial impetigo) or lessions which are superficial, thin-walled, and bullous as found in bullous impetigo. The lesions in bullous (staphylococcal) impetigo, which are always caused by S aureus, are superficial, thin-walled, and bullous.
imported from: doid.owl
database_cross_reference: ICD10CM:L01
database_cross_reference: ICD10CM:L01.0
database_cross_reference: ICD10CM:L01.00
database_cross_reference: ICD9CM:684
database_cross_reference: MSH:D007169
database_cross_reference: NCI:C99088
database_cross_reference: SNOMEDCT_US_2015_03_01:156319000
database_cross_reference: SNOMEDCT_US_2015_03_01:200710001
database_cross_reference: SNOMEDCT_US_2015_03_01:267836006
database_cross_reference: SNOMEDCT_US_2015_03_01:48277006
database_cross_reference: UMLS_CUI:C0021099
has_obo_namespace: disease_ontology
id: DOID:8504
in_subset: gram-positive bacterial infectious disease

herpes zoster
type: Class
subclass of: disease
definition: A viral infectious disease that results_in infection located_in nerve fiber, has_material_basis_in Human herpesvirus 3, which reactivates after appearing as chickenpox in childhood. The virus is transmitted_by direct contact with the rash, which can develop into chickenpox in newly-infected individuals. The infection has_symptom rash which is followed by blisters, has_symptom headache, has_symptom fever, has_symptom malaise, has_symptom itching, has_symptom burning pain, and has_symptom paresthesia.
imported from: doid.owl
has_alternative_id: DOID:8554
has_alternative_id: DOID:8555
has_alternative_id: DOID:8772
has_alternative_id: DOID:8801
has_alternative_id: DOID:9085
database_cross_reference: ICD10CM:B02
database_cross_reference: ICD10CM:B02.9
database_cross_reference: ICD9CM:053
database_cross_reference: MSH:D006562
database_cross_reference: NCI:C71079
database_cross_reference: SNOMEDCT_US_2015_03_01:154326002
database_cross_reference: SNOMEDCT_US_2015_03_01:186514003
database_cross_reference: SNOMEDCT_US_2015_03_01:186533008
database_cross_reference: SNOMEDCT_US_2015_03_01:4740000
database_cross_reference: UMLS_CUI:C0019360
has_exact_synonym: Shingles
has_exact_synonym: herpes zona
has_obo_namespace: disease_ontology
id: DOID:8536

chickenpox
type: Class
subclass of: disease
definition: A viral infectious disease that results_in infection located_in skin, has_material_basis_in Human herpesvirus 3, which is transmitted_by direct contact with secretions from the rash, or transmitted_by droplet spread of respiratory secretions. The infection has_symptom anorexia, has_symptom myalgia, has_symptom nausea, has_symptom fever, has_symptom headache, has_symptom sore throat, and has_symptom blisters.
imported from: doid.owl
has_alternative_id: DOID:8658
has_alternative_id: DOID:8693
has_alternative_id: DOID:9243
database_cross_reference: ICD10CM:B01
database_cross_reference: ICD10CM:B01.9
database_cross_reference: ICD9CM:052
database_cross_reference: MSH:D002644
database_cross_reference: NCI:C97132
database_cross_reference: SNOMEDCT_US_2015_03_01:154325003
database_cross_reference: SNOMEDCT_US_2015_03_01:186508005
database_cross_reference: SNOMEDCT_US_2015_03_01:38907003
database_cross_reference: UMLS_CUI:C0008049
has_exact_synonym: varicella
has_obo_namespace: disease_ontology
id: DOID:8659

Crohn's disease
type: Class
subclass of: disease
definition: An intestinal disease that involves inflammation located_in intestine.
imported from: doid.owl
has_alternative_id: DOID:8784
has_alternative_id: DOID:8855
has_alternative_id: DOID:8942
database_cross_reference: EFO:0000384
database_cross_reference: ICD10CM:K50.0
database_cross_reference: ICD9CM:555.0
database_cross_reference: NCI:C35210
database_cross_reference: SNOMEDCT_US_2015_03_01:155761004
database_cross_reference: SNOMEDCT_US_2015_03_01:196980005
database_cross_reference: SNOMEDCT_US_2015_03_01:56689002
database_cross_reference: UMLS_CUI:C0156146
has_exact_synonym: Crohn disease
has_exact_synonym: Crohn's disease of colon (disorder)
has_exact_synonym: Crohn's disease of large bowel
has_exact_synonym: Granulomatous Colitis
has_exact_synonym: Pediatric Crohn's disease
has_exact_synonym: regional Ileitis
has_exact_synonym: regional colitis
has_exact_synonym: regional enteritis of small intestine with large intestine
has_exact_synonym: regional enteritis of the large bowel
has_exact_synonym: regional ileocolitis
has_obo_namespace: disease_ontology
has_related_synonym: regional enteritis
id: DOID:8778
comment: MSH:C536215 added from NeuroDevNet [WAK].

intermediate coronary syndrome
type: Class
subclass of: disease
imported from: doid.owl
database_cross_reference: ICD10CM:I20.0
database_cross_reference: ICD9CM:411.1
database_cross_reference: MSH:D000789
database_cross_reference: NCI:C66911
database_cross_reference: SNOMEDCT_US_2015_03_01:155308009
database_cross_reference: SNOMEDCT_US_2015_03_01:155313008
database_cross_reference: SNOMEDCT_US_2015_03_01:155314002
database_cross_reference: SNOMEDCT_US_2015_03_01:194814006
database_cross_reference: SNOMEDCT_US_2015_03_01:194816008
database_cross_reference: SNOMEDCT_US_2015_03_01:194817004
database_cross_reference: SNOMEDCT_US_2015_03_01:194819001
database_cross_reference: SNOMEDCT_US_2015_03_01:233818002
database_cross_reference: SNOMEDCT_US_2015_03_01:233820004
database_cross_reference: SNOMEDCT_US_2015_03_01:25106000
database_cross_reference: SNOMEDCT_US_2015_03_01:4557003
database_cross_reference: SNOMEDCT_US_2015_03_01:59021001
database_cross_reference: SNOMEDCT_US_2015_03_01:64333001
database_cross_reference: UMLS_CUI:C0002965
has_exact_synonym: (Angina: [crescendo] or [unstable] or [at rest]) or (preinfarction syndrome) or (impending infarction)
has_exact_synonym: Angina at rest
has_exact_synonym: Anginal chest pain at rest
has_exact_synonym: Impending infarction (disorder)
has_exact_synonym: Preinfarction angina
has_exact_synonym: Preinfarction angina (disorder)
has_exact_synonym: Unstable angina
has_exact_synonym: Worsening angina
has_obo_namespace: disease_ontology
id: DOID:8805

psoriasis
type: Class
subclass of: disease
imported from: doid.owl
database_cross_reference: EFO:0000676
database_cross_reference: ICD10CM:L40
database_cross_reference: ICD10CM:L40.9
database_cross_reference: MSH:D011565
database_cross_reference: NCI:C3346
database_cross_reference: OMIM:177900
database_cross_reference: OMIM:601454
database_cross_reference: OMIM:602723
database_cross_reference: OMIM:603935
database_cross_reference: OMIM:604316
database_cross_reference: OMIM:605364
database_cross_reference: OMIM:605606
database_cross_reference: OMIM:607857
database_cross_reference: OMIM:610707
database_cross_reference: OMIM:612410
database_cross_reference: OMIM:612599
database_cross_reference: OMIM:612950
database_cross_reference: OMIM:614070
database_cross_reference: SNOMEDCT_US_2015_03_01:156369008
database_cross_reference: SNOMEDCT_US_2015_03_01:156371008
database_cross_reference: SNOMEDCT_US_2015_03_01:200961000
database_cross_reference: SNOMEDCT_US_2015_03_01:200978009
database_cross_reference: SNOMEDCT_US_2015_03_01:267851002
database_cross_reference: SNOMEDCT_US_2015_03_01:9014002
database_cross_reference: UMLS_CUI:C0033860
has_obo_namespace: disease_ontology
id: DOID:8893
in_subset: DO MGI slim

systemic lupus erythematosus
type: Class
subclass of: disease
subclass of: hypersensitivity reaction type II disease
definition: A lupus erythematosus that is an inflammation of connective tissue marked by skin rashes, joint pain and swelling, inflammation of the kidneys and inflammation of the tissue surrounding the heart.
imported from: doid.owl
database_cross_reference: EFO:0002690
database_cross_reference: ICD10CM:M32
database_cross_reference: ICD10CM:M32.9
database_cross_reference: ICD9CM:710.0
database_cross_reference: KEGG:05322
database_cross_reference: MSH:D008180
database_cross_reference: NCI:C3201
database_cross_reference: OMIM:152700
database_cross_reference: OMIM:300809
database_cross_reference: OMIM:601744
database_cross_reference: OMIM:605218
database_cross_reference: OMIM:605480
database_cross_reference: OMIM:608437
database_cross_reference: OMIM:609903
database_cross_reference: OMIM:609939
database_cross_reference: OMIM:610065
database_cross_reference: OMIM:610066
database_cross_reference: OMIM:610927
database_cross_reference: OMIM:612251
database_cross_reference: OMIM:612253
database_cross_reference: OMIM:612254
database_cross_reference: OMIM:612378
database_cross_reference: OMIM:613145
database_cross_reference: OMIM:614420
database_cross_reference: ORDO:536
database_cross_reference: SNOMEDCT_US_2015_03_01:156450004
database_cross_reference: SNOMEDCT_US_2015_03_01:201435004
database_cross_reference: SNOMEDCT_US_2015_03_01:201439005
database_cross_reference: SNOMEDCT_US_2015_03_01:55464009
database_cross_reference: UMLS_CUI:C0024141
has_exact_synonym: Lupus Erythematosus, systemic
has_exact_synonym: SLE - Lupus Erythematosus, systemic
has_exact_synonym: disseminated lupus erythematosus
has_obo_namespace: disease_ontology
id: DOID:9074
in_subset: DO MGI slim
comment: Xref MGI.

diabetes mellitus
type: Class
subclass of: disease
definition: A glucose metabolism disease characterized by chronic hyperglycaemia with disturbances of carbohydrate, fat and protein metabolism resulting from defects in insulin secretion, insulin action, or both.
imported from: doid.owl
database_cross_reference: ICD10CM:E08-E13
database_cross_reference: ICD10CM:E11
database_cross_reference: ICD9CM:250
database_cross_reference: MSH:D003920
database_cross_reference: NCI:C2985
database_cross_reference: SNOMEDCT_US_2015_03_01:154671004
database_cross_reference: SNOMEDCT_US_2015_03_01:191044006
database_cross_reference: SNOMEDCT_US_2015_03_01:267467004
database_cross_reference: SNOMEDCT_US_2015_03_01:73211009
database_cross_reference: UMLS_CUI:C0011849
has_obo_namespace: disease_ontology
id: DOID:9351

geographic location
type: Class
subclass of: site
type: NamedIndividual
definition: A reference to a place on the Earth, by its name or by its geographical location.
imported from: gaz.owl
has_alternative_id: GAZ:00000467
has_exact_synonym: geographic region {alternative name}
has_obo_namespace: GAZ
id: GAZ:00000448

United States of America
type: Class
subclass of: geographic location
type: NamedIndividual
definition: A federal constitutional republic comprising fifty states and a federal district. The country is situated mostly in central North America, where its forty-eight contiguous states and Washington, DC, the capital district, lie between the Pacific and Atlantic Oceans, bordered by Canada to the north and Mexico to the south. The State of Alaska is in the northwest of the continent, with Canada to its east and Russia to the west across the Bering Strait, and the State of Hawaii is in the mid-Pacific. The United States also possesses several territories, or insular areas, that are scattered around the Caribbean and Pacific. The states are divided into smaller administrative regions, called counties in most states, exceptions being Alaska (parts of the state are organized into subdivisions called boroughs; the rest of the state's territory that is not included in any borough is divided into "census areas"), and Louisiana (which is divided into county-equivalents that are called parishes). There are also independent cities which are within particular states but not part of any particular county or consolidated city-counties. Another type of organization is where the city and county are unified and function as an independent city. There are thirty-nine independent cities in Virginia and other independent cities or city-counties are San Francisco, California, Baltimore, Maryland, St. Louis, Missouri, Denver, Colorado and Carson City, Nevada. Counties can include a number of cities, towns, villages, or hamlets, or sometimes just a part of a city. Counties have varying degrees of political and legal significance, but they are always administrative divisions of the state. Counties in many states are further subdivided into townships, which, by definition, are administrative divisions of a county. In some states, such as Michigan, a township can file a charter with the state government, making itself into a "charter township", which is a type of mixed municipal and township statu…
imported from: gaz.owl
database_cross_reference: ISO3166-1:840
database_cross_reference: ISO3166-1:US
database_cross_reference: ISO3166-1:USA
database_cross_reference: ISO3166-2:US
has_exact_synonym: U.S.A
has_exact_synonym: USA
has_obo_namespace: GAZ
id: GAZ:00002459

Territory of Guam
type: Class
subclass of: Unincorporated Territory (USA)
type: NamedIndividual
located_in: Micronesia
located_in: Southern Marianas Islands
definition: An unincorporated territory of the United States.
imported from: gaz.owl
database_cross_reference: GNISID:01802705
database_cross_reference: INCITS38:66
database_cross_reference: ISO3166-1:316
database_cross_reference: ISO3166-1:GU
database_cross_reference: ISO3166-1:GUM
database_cross_reference: ISO3166-2:US-GU
has_exact_synonym: GU
has_obo_namespace: GAZ
id: GAZ:00003706
comment: lat_lon: 13deg27minN, 144deg47minE.

Unincorporated Territory (USA)
type: Class
subclass of: geographic location
type: NamedIndividual
located_in: United States of America
definition: An area of the United States of America under United States jurisdiction, to which Congress has determined that only select parts of the United States of America Constitution apply.
imported from: gaz.owl
has_obo_namespace: GAZ
id: GAZ:00003956

American Samoa
type: Class
subclass of: Unincorporated Territory (USA)
type: NamedIndividual
type: Unincorporated Territory (USA)
located_in: Samoan Archipelago
definition: An unincorporated territory of the United States located in the South Pacific Ocean, southeast of the sovereign State of Samoa. The main (largest and most populous) island is Tutuila, with the Manu'a Islands, Rose Atoll, and Swains Island also included in the territory.
imported from: gaz.owl
database_cross_reference: GNISID:01802701
database_cross_reference: INCITS38:60
database_cross_reference: ISO3166-1:016
database_cross_reference: ISO3166-1:AS
database_cross_reference: ISO3166-1:ASM
database_cross_reference: ISO3166-2:AS
database_cross_reference: ISO3166-2:US-AS
has_exact_synonym: AS
has_obo_namespace: GAZ
id: GAZ:00003957

United States Virgin Islands
type: Class
subclass of: Unincorporated Territory (USA)
type: NamedIndividual
located_in: Virgin Islands Archipelago
definition: A group of islands in the Caribbean that are an insular area of the United States. The islands are geographically part of the Virgin Islands archipelago and are located in the Leeward Islands of the Lesser Antilles. The US Virgin Islands are an organized, unincorporated United States territory. The US Virgin Islands are administratively divided into two districts and subdivided into 20 sub-districts.
imported from: gaz.owl
database_cross_reference: GNISID:01802710
database_cross_reference: INCITS38:78
database_cross_reference: ISO3166-1:850
database_cross_reference: ISO3166-1:VI
database_cross_reference: ISO3166-1:VIR
database_cross_reference: ISO3166-2:US-VI
has_exact_synonym: US Virgin Islands
has_exact_synonym: VI
has_obo_namespace: GAZ
id: GAZ:00003959

Republic of the Marshall Islands
type: Class
subclass of: Unincorporated Territory (USA)
type: NamedIndividual
located_in: Marshall Islands
definition: A Micronesian island nation in the western Pacific Ocean, located north of Nauru and Kiribati, east of the Federated States of Micronesia and south of the United States territory of Wake Island, to which it lays claim.
imported from: gaz.owl
database_cross_reference: ISO3166-1:584
database_cross_reference: ISO3166-1:MH
database_cross_reference: ISO3166-1:MHL
database_cross_reference: ISO3166-2:MH
has_obo_namespace: GAZ
id: GAZ:00006470

Commonwealth of Puerto Rico
type: Class
subclass of: Unincorporated Territory (USA)
type: NamedIndividual
type: Unincorporated Territory (USA)
located_in: Greater Antilles
definition: A semi-autonomous territory composed of an archipelago in the northeastern Caribbean, east of the Dominican Republic and west of the Virgin Islands, approximately 2,000 km off the coast of Florida (the nearest of the mainland United States).
imported from: gaz.owl
database_cross_reference: GNISID:01779808
database_cross_reference: INCITS38:72
database_cross_reference: ISO3166-1:630
database_cross_reference: ISO3166-1:PR
database_cross_reference: ISO3166-1:PRI
database_cross_reference: ISO3166-2:US-PR
has_exact_synonym: Estado Libre Asociado de Puerto Rico
has_obo_namespace: GAZ
id: GAZ:00006935

Northern Marianas
type: Class
subclass of: Unincorporated Territory (USA)
type: NamedIndividual
located_in: Northern Mariana Islands
located_in: Micronesia
definition: A commonwealth in political union with the United States.
imported from: gaz.owl
database_cross_reference: GNISID:01779809
database_cross_reference: INCITS38:69
database_cross_reference: ISO3166-1:580
database_cross_reference: ISO3166-1:MNP
database_cross_reference: ISO3166-1:MP
database_cross_reference: ISO3166-2:US-MP
has_exact_synonym: Commonwealth of the Northern Mariana Islands
has_exact_synonym: MP
has_exact_synonym: Sankattan Siha Na Islas Marianas
has_obo_namespace: GAZ
id: GAZ:00007109

Territory of Wake Island
type: Class
subclass of: Unincorporated Territory (USA)
type: NamedIndividual
located_in: Micronesia
located_in: Wake Island
definition: An unorganized, unincorporated territory of the United States, administered by the Office of Insular Affairs, US Department of the Interior.
imported from: gaz.owl
database_cross_reference: ISO3166-2:UM-79
has_obo_namespace: GAZ
id: GAZ:00007110

United States Minor Outlying Islands
type: Class
subclass of: Unincorporated Territory (USA)
type: NamedIndividual
definition: A statistical designation defined by ISO3166-1, consists of nine insular United States possessions. Palmyra Atoll is the only incorporated territory of the United States. Currently, none of the islands have any permanent residents.
imported from: gaz.owl
database_cross_reference: GNISID:01878752
database_cross_reference: INCITS38:74
database_cross_reference: ISO3166-1:581
database_cross_reference: ISO3166-1:UM
database_cross_reference: ISO3166-1:UMI
database_cross_reference: ISO3166-2:US-UM
has_obo_namespace: GAZ
id: GAZ:00007113

governmental organization
type: Class
subclass of: organization
definition: An organization that governs the people living in a particular geographical region or aggregate of geographical regions. The geographical region it governs can change over time (such as the westward expansion of the United States and the addition of Hawaii). Note: this definition was taken over from "geopolitical organization".
definition editor: Amanda Hicks
comment: IMPORTANT: The label "geopolitical organization" was previously used for OMRSE_00000044 (governmental organization). "geopoli organization" is a label for a new and different class.

molecular_function
type: Class
subclass of: process
definition: A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs.
editor note: This is the same as GO molecular function
has_exact_synonym: molecular function
id: GO:0003674
comment: Note that, in addition to forming the root of the molecular function ontology, this term is recommended for the annotation of gene products whose molecular function is unknown. When this term is used for annotation, it indicates that no information was available about the molecular function of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this. Despite its name, this is not a type of 'function' in the sense typically defined by upper ontologies such as Basic Formal Ontology (BFO). It is instead a BFO:process carried out by a single gene product or complex.
label: gene product or complex activity

Axiom
annotated source: molecular_function
annotated property: definition
annotated target: A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs.
database_cross_reference: GOC:pdt

behavior
type: Class
subclass of: biological_process
definition: The internally coordinated responses (actions or inactions) of animals (individuals or groups) to internal or external stimuli, via a mechanism that involves nervous system activity.
database_cross_reference: Wikipedia:Behavior
comment: 1. Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation reviews. 2. While a broader definition of behavior encompassing plants and single cell organisms would be justified on the basis of some usage (see PMID:20160973 for discussion), GO uses a tight definition that limits behavior to animals and to responses involving the nervous system, excluding plant responses that GO classifies under development, and responses of unicellular organisms that has general classifications for covering the responses of cells in multicellular organisms (e.g. cell chemotaxis).

Axiom
annotated source: behavior
annotated property: definition
annotated target: The internally coordinated responses (actions or inactions) of animals (individuals or groups) to internal or external stimuli, via a mechanism that involves nervous system activity.
database_cross_reference: GOC:ems
database_cross_reference: GOC:jl
database_cross_reference: ISBN:0395448956
database_cross_reference: PMID:20160973

biological_process
type: Class
subclass of: process
disjoint with: planned process
definition: A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
created by: jl
creation date: 2012-09-19T15:05:24Z
database_cross_reference: Wikipedia:Biological_process
has_exact_synonym: biological process
has_exact_synonym: physiological process
has_related_synonym: single organism process
has_related_synonym: single-organism process
id: GO:0008150
comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.
label: biological process

Axiom
annotated source: biological_process
annotated property: definition
annotated target: A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
database_cross_reference: GOC:pdt

kinase activity
type: Class
subclass of: molecular_function
subclass of: Restriction
  on property: is kinase activity
  has self: true
definition: Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
database_cross_reference: Reactome:R-HSA-6788855
database_cross_reference: Reactome:R-HSA-6788867
has_exact_synonym: phosphokinase activity
id: GO:0016301
comment: Note that this term encompasses all activities that transfer a single phosphate group; although ATP is by far the most common phosphate donor, reactions using other phosphate donors are included in this term.

Axiom
annotated source: kinase activity
annotated property: definition
annotated target: Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
database_cross_reference: ISBN:0198506732

FN3KRP phosphorylates PsiAm, RibAm
type: Axiom
annotated source: kinase activity
annotated property: database_cross_reference
annotated target: Reactome:R-HSA-6788855

FN3K phosphorylates ketosamines
type: Axiom
annotated source: kinase activity
annotated property: database_cross_reference
annotated target: Reactome:R-HSA-6788867

conditional specification
type: Class
subclass of: directive information entity
editor preferred term: conditional specification
has curation status: metadata complete
definition: A directive information entity that specifies what should happen if the trigger condition is fulfilled.
definition editor: PlanAndPlannedProcess Branch
definition source: OBI branch derived
definition source: OBI_0000349

measurement unit label
type: Class
subclass of: datum label
editor preferred term: measurement unit label
example of usage: Examples of measurement unit labels are liters, inches, weight per volume.
has curation status: pending final vetting
definition: A measurement unit label is as a label that is part of a scalar measurement datum and denotes a unit of measure.
editor note: 2009-03-16: provenance: a term measurement unit was proposed for OBI (OBI_0000176) , edited by Chris Stoeckert and Cristian Cocos, and subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definition of this, different, term.
editor note: 2009-03-16: review of this term done during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Melanie Courtot

objective specification
type: Class
subclass of: generically dependent continuant
subclass of: directive information entity
editor preferred term: objective specification
example of usage: In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction.
example of usage: purpose of a study; support of hypothesis, discovery of new information
has curation status: ready for release
has curation status: pending final vetting
definition: A directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved.
definition: a directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved.
editor note: 2009-03-16: original definition when imported from OBI read: "objective is an non realizable information entity which can serve as that proper part of a plan towards which the realization of the plan is directed."
editor note: 2014-03-31: In the example of usage ("In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction") there is a protocol which is the ChIP assay protocol. In addition to being concretized on paper, the protocol can be concretized as a realizable entity, such as a plan that inheres in a person. The objective specification is the part that says that some protein and DNA interactions are identified. This is a specification of a process endpoint: the boundary in the process before which they are not identified and after which they are. During the realization of the plan, the goal is to get to the point of having the interactions, and participants in the realization of the plan try to do that.
editor note: Answers the question, why did you do this experiment?
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Barry Smith
definition editor: PERSON: Bjoern Peters
definition editor: PERSON: Jennifer Fostel
alternative term: goal specification
definition source: OBI Plan and Planned Process/Roles Branch
definition source: OBI_0000217
imported from: ico.owl
imported from: obi.owl
imported from: vo.owl

narrative object
type: Class
subclass of: information content entity
editor preferred term: narrative object
example of usage: Examples of narrative objects are reports, journal articles, and patents submission.
has curation status: metadata incomplete
definition: A narrative object is an information content entity that is a set of propositions.
editor note: 2009-08-10 Alan Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by 'textual entity' and 'figure'. Alan restored as there are OBI dependencies and this merits further discussion
editor note: agree - DENRIE. Issue(alan) do we only mean text? What about a story told by mime. Does music count? (no) what about an oral report. Regarding definition, saying it is a set of propositions means we loose the idea that wording matters. Maybe adjust saying a narrative object has some relationshop to a set of propositions
definition editor: person:Chris Stoeckert
definition source: OBI_0000013
definition source: group:OBI

action specification
type: Class
subclass of: directive information entity
editor preferred term: action specification
example of usage: Pour the contents of flask 1 into flask 2
has curation status: ready for release
has curation status: metadata incomplete
definition: A directive information entity that describes an action the bearer will take.
definition: a directive information entity that describes an action the bearer will take
definition editor: Alan Ruttenberg
definition source: OBI Plan and Planned Process branch
imported from: ico.owl
imported from: obi.owl

obsolete_artifact
type: Class
subclass of: ObsoleteClass
has obsolescence reason: failed exploratory term
deprecated: true

datum label
type: Class
subclass of: information content entity
editor preferred term: datum label
has curation status: metadata incomplete
definition: A label is a symbol that is part of some other datum and is used to either partially define the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label
editor note: http://www.golovchenko.org/cgi-bin/wnsearch#4n
definition editor: GROUP: IAO
curator note: 9/22/11 BP: changed the rdfs:label for this class from 'label' to 'datum label' to convey that this class is not intended to cover all kinds of labels (stickers, radiolabels, etc.), and not even all kind of textual labels, but rather the kind of labels occuring in a datum.

software
type: Class
subclass of: plan specification
editor preferred term: software
has curation status: metadata complete
definition: Software is a plan specification composed of a series of instructions that can be interpreted by or directly executed by a processing unit.
editor note: see sourceforge tracker discussion at http://sourceforge.net/tracker/index.php?func=detail&aid=1958818&group_id=177891&atid=886178
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Bjoern Peters
definition editor: PERSON: Chris Stoeckert
definition editor: PERSON: Melanie Courtot
definition source: GROUP: OBI

obsolete2_digital entity
type: Class
subclass of: ObsoleteClass
editor preferred term: obsolete_digital entity
definition: A digital entity is an information entity which is a collection of bits that can be interpreted by a computer. Two digital entities are the same if they are bitwise identical.
editor note: 3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4 Superclass was 'digitial quality'
definition editor: person:Chris Stoeckert
definition source: OBI_0000261
definition source: group:OBI
has obsolescence reason: failed exploratory term
deprecated: true

journal article
type: Class
subclass of: report
subclass of: publication
subclass of: Restriction
  on property: is specified output of
  some values from: publishing process
subclass of: Restriction
  on property: is specified output of
  all values from: publishing process
editor preferred term: journal article
example of usage: Examples are articles published in the journals, Nature and Science. The content can often be cited by reference to a paper based encoding, e.g. Authors, Title of article, Journal name, date or year of publication, volume and page number.
has curation status: metadata complete
definition: A report that is published in a journal.
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Chris Stoeckert
definition source: OBI_0000159
definition source: group:OBI

information carrier
type: Class
equivalent class: Class
  intersection of: quality
  intersection of: Restriction
    on property: concretizes
    some values from: information content entity
subclass of: quality
subclass of: Restriction
  on property: concretizes
  some values from: information content entity
editor preferred term: information carrier
example of usage: In the case of a printed paperback novel the physicality of the ink and of the paper form part of the information bearer. The qualities of appearing black and having a certain pattern for the ink and appearing white for the paper form part of the information carrier in this case.
has curation status: pending final vetting
definition: A quality of an information bearer that imparts the information content
editor note: 12/15/09: There is a concern that some ways that carry information may be processes rather than qualities, such as in a 'delayed wave carrier'.
editor note: 2014-03-10: We are not certain that all information carriers are qualities. There was a discussion of dropping it.
definition editor: PERSON: Alan Ruttenberg
definition source: Smith, Ceusters, Ruttenberg, 2000 years of philosophy

model number
type: Class
subclass of: symbol
editor preferred term: model number
has curation status: pending final vetting
definition: A model number is an information content entity specifically borne by catalogs, design specifications, advertising materials, inventory systems and similar that is about manufactured objects of the same class. The model number is an alternative term for the class. The manufactered objects may or may not also bear the model number. Model numbers can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots.
editor note: manufactered items may have more than one model number, sometimes by rebranding, or because companies are sold and the products issued new model numbers
definition editor: Person: Alan Ruttenberg

obsolete_material_entity
type: Class
subclass of: ObsoleteClass
has obsolescence reason: placeholder removed
deprecated: true

obsolete2_binary digital entity
type: Class
subclass of: ObsoleteClass
editor preferred term: binary digital entity
example of usage: MS Word document, ZIP file, DICOM file, JPEG file
definition: A binary digital entity is a digital entity that is encoded in a way that is not easily human readable and that contains other than text characters.
editor note: 3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4 Superclass was 'digital entity'
editor note: digital_entity
definition editor: person:Chris Stoeckert
definition source: OBI_0000244
definition source: group:OBI
has obsolescence reason: failed exploratory term
deprecated: true

obsolete_unit of measure
type: Class
subclass of: ObsoleteClass
example of usage: The length of a ruler.
definition: a unit of measure is the quality of some material entity compared to which another quality is some multiple of.
definition editor: Alan Ruttenberg
definition source: Smith, Ceusters, Ruttenberg, 2000 years of philosophy
has obsolescence reason: failed exploratory term
deprecated: true

programming language
type: Class
subclass of: plan specification
editor preferred term: programming language
example of usage: R, Perl, Java
has curation status: metadata complete
definition: A language in which source code is written that is intended to be executed/run by a software interpreter. Programming languages are ways to write instructions that specify what to do, and sometimes, how to do it.
definition editor: person:Alan Ruttenberg
definition editor: person:Chris Stoeckert
definition source: OBI_0000058
definition source: group:OBI

data item
type: Class
subclass of: information content entity
editor preferred term: data item
example of usage: Data items include counts of things, analyte concentrations, and statistical summaries.
has curation status: ready for release
has curation status: pending final vetting
definition: An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.
definition: a data item is an information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements.
editor note: 2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers.
editor note: 2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum.
editor note: 2009-03-16: removed datum as alternative term as datum specifically refers to singular form, and is thus not an exact synonym.
editor note: 2014-03-31: See discussion at http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/
editor note: JAR: datum -- well, this will be very tricky to define, but maybe some information-like stuff that might be put into a computer and that is meant, by someone, to denote and/or to be interpreted by some process... I would include lists, tables, sentences... I think I might defer to Barry, or to Brian Cantwell Smith JAR: A data item is an approximately justified approximately true approximate belief
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Chris Stoeckert
definition editor: PERSON: Jonathan Rees
alternative term: data
imported from: ico.owl
imported from: obi.owl

symbol
type: Class
subclass of: information content entity
editor preferred term: symbol
example of usage: a serial number such as "12324X"
example of usage: a stop sign
example of usage: a written proper name such as "OBI"
has curation status: pending final vetting
definition: An information content entity that is a mark(s) or character(s) used as a conventional representation of another entity.
editor note: 20091104, MC: this needs work and will most probably change
editor note: 2014-03-31: We would like to have a deeper analysis of 'mark' and 'sign' in the future (see https://code.google.com/p/information-artifact-ontology/issues/detail?id=154).
editor note: 2014-03-31: We would like to have a deeper analysis of 'mark' and 'sign' in the future (see https://github.com/information-artifact-ontology/IAO/issues/154).
definition editor: PERSON: James A. Overton
definition editor: PERSON: Jonathan Rees
definition source: based on Oxford English Dictionary
imported from: ico.owl
imported from: obi.owl

numeral
type: Class
subclass of: symbol
editor preferred term: numeral
has curation status: metadata incomplete
definition: A symbol that denotes a number.
definition editor: PERSON: Jonathan Rees

information content entity
type: Class
subclass of: generically dependent continuant
subclass of: Restriction
  on property: is about
  some values from: entity
editor preferred term: information content entity
example of usage: Examples of information content entites include journal articles, data, graphical layouts, and graphs.
has curation status: ready for release
has curation status: pending final vetting
definition: A generically dependent continuant that is about some thing.
editor note: 2014-03-10: The use of "thing" is intended to be general enough to include universals and configurations (see https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ).
editor note: information_content_entity 'is_encoded_in' some digital_entity in obi before split (040907). information_content_entity 'is_encoded_in' some physical_document in obi before split (040907). Previous. An information content entity is a non-realizable information entity that 'is encoded in' some digital or physical entity.
definition editor: PERSON: Chris Stoeckert
definition source: OBI_0000142
imported from: ico.owl
imported from: obi.owl

integer numeral
type: Class
subclass of: numeral
editor preferred term: integer numeral
has curation status: metadata incomplete
definition: A numeral that denotes an integer
definition editor: PERSON: Jonathan Rees

scalar measurement datum
type: Class
subclass of: measurement datum
subclass of: Restriction
  on property: has measurement unit label
  min cardinality: 1
subclass of: Restriction
  on property: has measurement value
  min cardinality: 1
example of usage: 10 feet. 3 ml.
has curation status: metadata complete
definition: A scalar measurement datum is a measurement datum that is composed of two parts, numerals and a unit label.
editor note: 2009-03-16: we decided to keep datum singular in scalar measurement datum, as in this case we explicitly refer to the singular form
editor note: Would write this as: has_part some 'measurement unit label' and has_part some numeral and has_part exactly 2, except for the fact that this won't let us take advantage of OWL reasoning over the numbers. Instead use has measurment value property to represent the same. Use has measurement unit label (subproperty of has_part) so we can easily say that there is only one of them.
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Melanie Courtot

directive information entity
type: Class
subclass of: information content entity
subclass of: Restriction
  on property: is about
  some values from: realizable entity
editor preferred term: directive information entity
has curation status: ready for release
has curation status: metadata incomplete
definition: An information content entity whose concretizations indicate to their bearer how to realize them in a process.
editor note: 2009-03-16: provenance: a term realizable information entity was proposed for OBI (OBI_0000337) , edited by the PlanAndPlannedProcess branch. Original definition was "is the specification of a process that can be concretized and realized by an actor" with alternative term "instruction".It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term.
editor note: 2013-05-30 Alan Ruttenberg: What differentiates a directive information entity from an information concretization is that it can have concretizations that are either qualities or realizable entities. The concretizations that are realizable entities are created when an individual chooses to take up the direction, i.e. has the intention to (try to) realize it.
editor note: 8/6/2009 Alan Ruttenberg: Changed label from "information entity about a realizable" after discussions at ICBO
editor note: Werner pushed back on calling it realizable information entity as it isn't realizable. However this name isn't right either. An example would be a recipe. The realizable entity would be a plan, but the information entity isn't about the plan, it, once concretized, *is* the plan. -Alan
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Bjoern Peters
imported from: ico.owl
imported from: obi.owl

time trigger
type: Class
subclass of: conditional specification
editor preferred term: time trigger
has curation status: uncurated
definition editor: PlanAndPlannedProcess Branch

obsolete_study interpretation
type: Class
subclass of: ObsoleteClass
editor preferred term: obsolete_study interpretation
has curation status: pending final vetting
definition: A study interpretation is a textual entity about the implications of a study result. Examples include discussion of whether a hypothesis is false, whether the study failed to address the hypothesis, and whether the study results have led to new hypotheses
editor note: 2009-03-16: definition was "A conclusion is a narrative object which can be published in a paper summerizing and interpreting a protocol application."
editor note: 2009-03-16: work has been done on this term during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.
editor note: The obsoleting of narrative object required a modest change in the definition of this term. Circularity with "interpretation... interprets" has been removed, using "about the implications" instead.
definition editor: Lawrence Hunter
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Jennifer Fostel
definition editor: PERSON: Melanie Courtot
alternative term: conclusion
definition source: OBI_0000005
has obsolescence reason: failed exploratory term
deprecated: true

dot plot
type: Class
subclass of: graph
editor preferred term: dot plot
example of usage: Dot plot of SSC-H and FSC-H.
has curation status: example to be eventually removed
definition: A dot plot is a report graph which is a graphical representation of data where each data point is represented by a single dot placed on coordinates corresponding to data point values in particular dimensions.
definition editor: person:Allyson Lister
definition editor: person:Chris Stoeckert
definition source: OBI_0000123
definition source: group:OBI

graph
type: Class
subclass of: diagram
editor preferred term: graph
has curation status: pending final vetting
definition: A diagram that presents one or more tuples of information by mapping those tuples in to a two dimensional space in a non arbitrary way.
definition editor: PERSON: Lawrence Hunter
definition editor: person:Alan Ruttenberg
definition editor: person:Allyson Lister
definition source: OBI_0000240
definition source: group:OBI

obsolete2_text based digital entity
type: Class
subclass of: ObsoleteClass
editor preferred term: text based digital entity
example of usage: XML file, C++ source code file
definition: A text based digital entity is a digital entity that is encoded so that it only contains text characters.
editor note: 3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4 superclass was 'digital document'
editor note: digital_entity
definition editor: person:Chris Stoeckert
definition source: OBI_0000132
definition source: group:OBI
has obsolescence reason: failed exploratory term
deprecated: true

rule
type: Class
subclass of: conditional specification
editor preferred term: rule
example of usage: example to be added
has curation status: metadata incomplete
definition: A rule is an executable which guides, defines, restricts actions.
editor note: MSI
definition editor: PRS
definition source: OBI_0500021
definition source: PRS

contour plot
type: Class
subclass of: graph
editor preferred term: contour plot
example of usage: Contour plot of SSC-H, FSC-H, and FL1-H.
has curation status: example to be eventually removed
editor note: generically_dependent_continuants
definition editor: person:Allyson Lister
definition editor: person:Chris Stoeckert
definition source: OBI_0000246
definition source: group:Flow Cytometry community

obsolete2_report figure
type: Class
subclass of: ObsoleteClass
editor preferred term: report figure
has curation status: uncurated
definition: A report figure is a report display element that has some aspect of illustration, but may be a composite of figures, images, and other elements
editor note: I prepended the 'report ' to make it clear that we mean parts of reports here. We may want a more generic version of 'figure', in which case this would become a defined class - figure and part_of some report
editor note: Replaced by defined version of figure
definition editor: person:Alan Ruttenberg
definition editor: person:Allyson Lister
definition source: OBI_0000027
definition source: group:OBI
has obsolescence reason: failed exploratory term
deprecated: true

algorithm
type: Class
subclass of: plan specification
editor preferred term: algorithm
example of usage: PMID: 18378114.Genomics. 2008 Mar 28. LINKGEN: A new algorithm to process data in genetic linkage studies.
has curation status: metadata complete
definition: A plan specification which describes the inputs and output of mathematical functions as well as workflow of execution for achieving an predefined objective. Algorithms are realized usually by means of implementation as computer programs for execution by automata.
definition editor: Philippe Rocca-Serra
definition editor: PlanAndPlannedProcess Branch
definition source: OBI_0000270
definition source: adapted from discussion on OBI list (Matthew Pocock, Christian Cocos, Alan Ruttenberg)

software interpreter
type: Class
subclass of: algorithm
editor preferred term: software interpreter
example of usage: R program, Perl interpreter, Java virtual machine
has curation status: metadata complete
definition: A software interpreter is a software application that executes some specified input software.
editor note: Do we care? Jennifer: Yes, there was a particular version of R that had a bug and it was fixed later. That would imply that we mean specific version of an interpreter. So an instance of this would be a particular version of the interpreter
definition editor: person:Alan Ruttenberg
definition editor: person:Chris Stoeckert
definition source: OBI_0000199
definition source: group:OBI

curation status specification
type: Class
equivalent class: Class
  one of: example to be eventually removed
  one of: metadata complete
  one of: organizational term
  one of: ready for release
  one of: metadata incomplete
  one of: uncurated
  one of: pending final vetting
  one of: to be replaced with external ontology term
  one of: requires discussion
subclass of: data about an ontology part
editor preferred term: curation status specification
has curation status: pending final vetting
definition: The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.
editor note: Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)
definition editor: PERSON:Bill Bug
definition source: GROUP:OBI:<http://purl.obolibrary.org/obo/obi>
definition source: OBI_0000266
imported from: ico.owl
imported from: obi.owl

density plot
type: Class
subclass of: graph
editor preferred term: density plot
example of usage: Density plot of SSC-H and FSC-H.
has curation status: example to be eventually removed
definition: A density plot is a report graph which is a graphical representation of data where the tint of a particular pixel corresponds to some kind of function corresponding the the amount of data points relativelly with their distance from the the pixel.
definition editor: person:Allyson Lister
definition editor: person:Chris Stoeckert
definition source: OBI_0000179
definition source: group:Flow Cytometry community

report
type: Class
subclass of: document
editor preferred term: report
example of usage: Examples of reports are gene lists and investigation reports. These are not published (journal) articles but may be included in a journal article.
has curation status: pending final vetting
definition: A document assembled by an author for the purpose of providing information for the audience. A report is the output of a documenting process and has the objective to be consumed by a specific audience. Topic of the report is on something that has completed. A report is not a single figure. Examples of reports are journal article, patent application, grant progress report, case report (not patient record).
editor note: 2009-03-16: comment from Darren Natale: I am slightly uneasy with the sentence "Topic of the report is on something that has completed." Should it be restricted to those things that are completed? For example, a progress report is (usually) about something that definitely has *not* been completed, or may include (only) projections. I think the definition would not suffer if the whole sentence is deleted.
editor note: 2009-03-16: this was report of results with definition: A report is a narrative object that is a formal statement of the results of an investigation, or of any matter on which definite information is required, made by some person or body instructed or required to do so.
editor note: 2009-03-16: work has been done on this term during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.
editor note: 2009-08-10 Alan Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by 'document'. Alan restored as there are OBI dependencies and this merits further discussion
editor note: disagreement about where reports go. alan: only some gene lists are reports. Is a report all the content of some document? The example of usage suggests that a report may be part of some article. Term needs clarification
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Chris Stoeckert
definition editor: PERSON: Melanie Courtot
definition source: GROUP: OBI
definition source: OBI_0000099

obsolete_report element
type: Class
subclass of: ObsoleteClass
editor preferred term: report element
has curation status: metadata complete
definition: A report element is a narrative object in which information is presented and consumed by a human being, and is part of a report. Examples of report elements are figure (dot plot), table, text portion (may include a movie or audio clip on a web page).
editor note: 2009-03-16: needs some more work (clarify relations).
editor note: 2009-03-16: was report display element with definition: A report display element is a narrative object that is part of a report. Report display elements are set off from the textual parts of a report and are typically given a label(e.g. Figure 2) which is used to refer to the element from the text. Typically the 2d layout is part of the identity of such elements.
editor note: 2009-03-16: work has been done on this term during during the OBI workshop winter 2009 and the current definition was considered acceptable for use in OBI. If there is a need to modify this definition please notify OBI.
editor note: 2009-08-10 Alan Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by 'textual entity' and 'figure'. Alan restored as there are OBI dependencies and this merits further discussion
editor note: Replaced by textual entity and figure
editor note: There will be some issue here about whether these are defined classes. As intended these are meant to denote the parts of the report that are not textual but are typically boxed and set within the text, labelled with some identifier, and referred to in the text
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Allyson Lister
definition editor: PERSON: Melanie Courtot
definition source: GROUP:OBI
definition source: OBI_0000001
has obsolescence reason: failed exploratory term
deprecated: true

obsolete2_binary executable
type: Class
subclass of: ObsoleteClass
editor preferred term: binary executable
definition: Binary executable is a digital entity consisting of the binary representation of machine instructions of a specific processor or they may be binary pseudocode for a virtual machine. A non-source executable file is also called an object program. It is assumed that the binary executable file contains properly-formatted computer instructions. (derived from Wikipedia, Nov 1, 2007)
editor note: 3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4 superclass was 'digital entity'
definition editor: person:Jennifer Fostel
definition source: OBI_0000222
definition source: group:OBI
has obsolescence reason: failed exploratory term
deprecated: true

source code module
type: Class
subclass of: directive information entity
editor preferred term: source code module
example of usage: The written source code that implements part of an algorithm. Test - if you know that it was written in a specific language, then it can be source code module. We mean here, roughly, the wording of a document such as a perl script.
has curation status: metadata incomplete
definition: A source code module is a directive information entity that specifies, using a programming language, some algorithm.
definition editor: person:Alan Ruttenberg
definition editor: person:Chris Stoeckert
definition source: OBI_0000039
definition source: group:OBI

obsolete_report table
type: Class
subclass of: ObsoleteClass
editor preferred term: report table
has curation status: example to be eventually removed
definition: A report table is a report display element consisting of a matrix of cells layed out in a grid, some set of which are filled with some information content
editor note: 2009-08-10 Alan Ruttenberg: Larry Hunter suggests that this be obsoleted and replaced by 'textual entity table'. Alan restored as there are OBI dependencies and this merits further discussion
definition editor: person:Alan Ruttenberg
definition editor: person:Allyson Lister
definition source: OBI_0000265
definition source: group:OBI
has obsolescence reason: failed exploratory term
deprecated: true

data format specification
type: Class
subclass of: directive information entity
editor preferred term: data format specification
has curation status: metadata incomplete
definition: A data format specification is the information content borne by the document published defining the specification. Example: The ISO document specifying what encompasses an XML document; The instructions in a XSD file
editor note: 2009-03-16: provenance: term imported from OBI_0000187, which had original definition "A data format specification is a plan which organizes information. Example: The ISO document specifying what encompasses an XML document; The instructions in a XSD file"
definition editor: PERSON: Alan Ruttenberg
definition editor: PlanAndPlannedProcess Branch
definition source: OBI branch derived
definition source: OBI_0000187

data set
type: Class
subclass of: data item
editor preferred term: data set
example of usage: Intensity values in a CEL file or from multiple CEL files comprise a data set (as opposed to the CEL files themselves).
has curation status: pending final vetting
definition: A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets.
editor note: 2009/10/23 Alan Ruttenberg. The intention is that this term represent collections of like data. So this isn't for, e.g. the whole contents of a cel file, which includes parameters, metadata etc. This is more like java arrays of a certain rather specific type
editor note: 2014-05-05: Data sets are aggregates and thus must include two or more data items. We have chosen not to add logical axioms to make this restriction.
definition editor: person:Allyson Lister
definition editor: person:Chris Stoeckert
definition source: OBI_0000042
definition source: group:OBI

image
type: Class
subclass of: figure
editor preferred term: image
has curation status: ready for release
definition: An image is an affine projection to a two dimensional surface, of measurements of some quality of an entity or entities repeated at regular intervals across a spatial range, where the measurements are represented as color and luminosity on the projected on surface.
definition editor: person:Alan Ruttenberg
definition editor: person:Allyson
definition editor: person:Chris Stoeckert
definition source: OBI_0000030
definition source: group:OBI

data about an ontology part
type: Class
subclass of: data item
editor preferred term: data about an ontology part
definition: Data about an ontology part is a data item about a part of an ontology, for example a term
definition: data about an ontology part is a data item about a part of an ontology, for example a term
definition editor: Person:Alan Ruttenberg
imported from: ico.owl
imported from: obi.owl

plan specification
type: Class
subclass of: directive information entity
subclass of: Restriction
  on property: has part
  some values from: objective specification
subclass of: Restriction
  on property: has part
  some values from: action specification
editor preferred term: plan specification
example of usage: PMID: 18323827.Nat Med. 2008 Mar;14(3):226.New plan proposed to help resolve conflicting medical advice.
has curation status: metadata complete
has curation status: ready for release
definition: A directive information entity with action specifications and objective specifications as parts that, when concretized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified.
definition: A directive information entity with action specifications and objective specifications as parts, and that may be concretized as a realizable entity that, if realized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified.
editor note: 2009-03-16: provenance: a term a plan was proposed for OBI (OBI_0000344) , edited by the PlanAndPlannedProcess branch. Original definition was " a plan is a specification of a process that is realized by an actor to achieve the objective specified as part of the plan". It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term.
editor note: 2014-03-31: A plan specification can have other parts, such as conditional specifications.
editor note: 2022-01-16 Updated definition to that proposed by Clint Dowloand, IAO Issue 231.
editor note: Alternative previous definition: a plan is a set of instructions that specify how an objective should be achieved
definition editor: Alan Ruttenberg
definition editor: Clint Dowland
definition source: OBI Plan and Planned Process branch
definition source: OBI_0000344
imported from: ico.owl
imported from: obi.owl
comment: 2/3/2009 Comment from OBI review. Action specification not well enough specified. Conditional specification not well enough specified. Question whether all plan specifications have objective specifications. Request that IAO either clarify these or change definitions not to use them

obsolete2_digital document
type: Class
subclass of: ObsoleteClass
editor preferred term: digital document
definition: A digital document is a digital entity consisting of an electronic file which can be rendered into human-readable form by one or more computational applications. The digital document does not refer to the information content of the document but to an instance of the file.
editor note: 3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4 superclass was 'digial entity'
definition editor: person:Jennifer Fostel
definition source: OBI_0000195
definition source: group:OBI
has obsolescence reason: failed exploratory term
deprecated: true

measurement datum
type: Class
subclass of: data item
editor preferred term: measurement datum
example of usage: Examples of measurement data are the recoding of the weight of a mouse as {40,mass,"grams"}, the recording of an observation of the behavior of the mouse {,process,"agitated"}, the recording of the expression level of a gene as measured through the process of microarray experiment {3.4,luminosity,}.
has curation status: pending final vetting
definition: A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device.
editor note: 2/2/2009 is_specified_output of some assay?
definition editor: person:Chris Stoeckert
definition source: OBI_0000305
definition source: group:OBI

obsolete_identifier
type: Class
subclass of: ObsoleteClass
has curation status: organizational term
editor note: _identifier is a container under information content entity for collecting types of terms to indicate a specific instance or clas of what was used or participated in an investigation. Identifiers are borne by a product or its packaging, and can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots. Note: everybody agreed that identifier is probably a too general term. We however felt that it would be appropriate to group "identifiying" terms under some kind of umbrella. We therefore propose to use _identifier for that purpose. As per OBI conventions, the _ prefixing identifier indicates that this is a helper class and shouldn't be considered as final.
has obsolescence reason: placeholder removed
deprecated: true

version number
type: Class
subclass of: symbol
editor preferred term: version number
has curation status: metadata incomplete
definition: A version number is an information content entity which is a sequence of characters borne by part of each of a class of manufactured products or its packaging and indicates its order within a set of other products having the same name.
editor note: Note: we feel that at the moment we are happy with a general version number, and that we will subclass as needed in the future. For example, see 7. genome sequence version
definition editor: GROUP: IAO

serial number
type: Class
subclass of: symbol
editor preferred term: serial number
has curation status: metadata incomplete
definition: A serial number is an information content entity which is a unique sequence of characters borne by part of manufactured product or its packaging that is assigned to each individual in some class of products, and so can serve as a way to identify an individual product within the class. Serial numbers can be encoded in a variety of other information objects, such as bar codes, numerals, or patterns of dots.
editor note: Note: during the call there was some confusion between serial number and model number. We agreed that it would be very helpful for all those terms to have example of usages - please add if you have any :-)
definition editor: GROUP: IAO

lot number
type: Class
subclass of: symbol
editor preferred term: lot number
has curation status: metadata incomplete
definition: A lot number is an information content entity which is an identical sequence of character borne by part of manufactured product or its packaging for each instances of a product class in a discrete batch of an item. Lot numbers are usually assigned to each separate production run of an item. Manufacturing as a lot might be due to a variety of reasons, for example, a single process during which many individuals are made from the same portion of source material. Lot numbers can be encoded in a pattern of other information objects, such as bar codes, numerals, or patterns of dots.
definition editor: GROUP: IAO
alternative term: batch number

setting datum
type: Class
subclass of: data item
has curation status: metadata incomplete
definition: A settings datum is a datum that denotes some configuration of an instrument.
editor note: 2/3/2009 Feedback from OBI This should be a "setting specification". There is a question of whether it is information about a realizable or not. Pro other specification are about realizables. Cons sometimes specifies a quality which is not a realizable.
editor note: Alan grouped these in placeholder for the moment. Name by analogy to measurement datum.

obsolete_digital quality
type: Class
subclass of: ObsoleteClass
editor note: 3/22/2009 Alan Ruttenberg, obsoleted per http://groups.google.com/group/information-ontology/browse_thread/thread/789ad4b7708d5cf4
editor note: Need to rework digital entity. Digital quality was suggested by Barry.
has obsolescence reason: failed exploratory term
deprecated: true

conclusion textual entity
type: Class
subclass of: textual entity
editor preferred term: conclusion textual entity
example of usage: that fucoidan has a small statistically significant effect on AT3 level but no useful clinical effect as in-vivo anticoagulant, a paraphrase of part of the last paragraph of the discussion section of the paper 'Pilot clinical study to evaluate the anticoagulant activity of fucoidan', by Lowenthal et. al.PMID:19696660
has curation status: metadata complete
definition: A textual entity that expresses the results of reasoning about a problem, for instance as typically found towards the end of scientific papers.
editor note: 2009/09/28 Alan Ruttenberg. Fucoidan-use-case
editor note: 2009/10/23 Alan Ruttenberg: We need to work on the definition still
definition editor: Person:Alan Ruttenberg

material information bearer
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: bearer of
    some values from: Restriction
      on property: concretizes
      some values from: information content entity
subclass of: material entity
subclass of: Restriction
  on property: bearer of
  some values from: Restriction
    on property: concretizes
    some values from: information content entity
editor preferred term: material information bearer
example of usage: A page of a paperback novel with writing on it. The paper itself is a material information bearer, the pattern of ink is the information carrier.
example of usage: a brain
example of usage: a hard drive
has curation status: ready for release
definition: A material entity in which a concretization of an information content entity inheres.
definition editor: GROUP: IAO

histogram
type: Class
subclass of: graph
editor preferred term: histogram
has curation status: ready for release
definition: A histogram is a report graph which is a statistical description of a distribution in terms of occurrence frequencies of different event classes.
definition editor: PERSON:Chris Stoeckert
definition editor: PERSON:James Malone
definition editor: PERSON:Melanie Courtot
definition source: GROUP:OBI

heatmap
type: Class
subclass of: graph
editor preferred term: heatmap
has curation status: ready for release
definition: A heatmap is a report graph which is a graphical representation of data where the values taken by a variable(s) are shown as colors in a two-dimensional map.
definition editor: PERSON:Chris Stoeckert
definition editor: PERSON:James Malone
definition editor: PERSON:Melanie Courtot
definition source: GROUP:OBI

Venn diagram
type: Class
subclass of: graph
editor preferred term: Venn diagram
has curation status: ready for release
definition: A Venn diagram is a report graph showing all hypothetically possible logical relations between a finite collection of sets.
definition editor: PERSON:Chris Stoeckert
definition editor: PERSON:James Malone
definition editor: PERSON:Melanie Courtot
definition source: WEB: http://en.wikipedia.org/wiki/Venn_diagram

obsolete_survival curve
type: Class
subclass of: ObsoleteClass
editor preferred term: obsolete_survival curve
has curation status: ready for release
definition: A survival curve is a report graph which is a graphical representation of data where the percentage of survival is plotted as a function of time.
definition editor: PERSON:Chris Stoeckert
definition editor: PERSON:James Malone
definition editor: PERSON:Melanie Courtot
definition source: WEB: http://www.graphpad.com/www/book/survive.htm
has obsolescence reason: failed exploratory term
deprecated: true

dendrogram
type: Class
subclass of: graph
editor preferred term: dendrogram
example of usage: Dendrograms are often used in computational biology to illustrate the clustering of genes.
has curation status: ready for release
definition: A dendrogram is a report graph which is a tree diagram frequently used to illustrate the arrangement of the clusters produced by a clustering algorithm.
definition editor: PERSON:Chris Stoeckert
definition editor: PERSON:James Malone
definition editor: PERSON:Melanie Courtot
definition source: WEB: http://en.wikipedia.org/wiki/Dendrogram

scatter plot
type: Class
subclass of: graph
editor preferred term: scatter plot
example of usage: Comparison of gene expression values in two samples can be displayed in a scatter plot
has curation status: ready for release
definition: A scatterplot is a graph which uses Cartesian coordinates to display values for two variables for a set of data. The data is displayed as a collection of points, each having the value of one variable determining the position on the horizontal axis and the value of the other variable determining the position on the vertical axis.
definition editor: PERSON:Chris Stoeckert
definition editor: PERSON:James Malone
definition editor: PERSON:Melanie Courtot
alternative term: scattergraph
definition source: WEB: http://en.wikipedia.org/wiki/Scatterplot

photograph
type: Class
subclass of: image
has curation status: ready for release
definition: A photograph is created by projecting an image onto a photosensitive surface such as a chemically treated plate or film, CCD receptor, etc.
definition editor: PERSON:Alan Ruttenberg
definition editor: PERSON:Joanne Luciano
definition editor: PERSON:Melanie Courtot
definition source: WEB: http://en.wiktionary.org/wiki/photograph

photographic print
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: bearer of
    some values from: Restriction
      on property: concretizes
      some values from: photograph
subclass of: material information bearer
subclass of: Restriction
  on property: bearer of
  some values from: Restriction
    on property: concretizes
    some values from: photograph
editor preferred term: photographic print
has curation status: pending final vetting
definition: A photographic print is a material entity upon which a photograph generically depends.
definition editor: PERSON:Alan Ruttenberg
definition editor: PERSON:Melanie Courtot

obsolescence reason specification
type: Class
equivalent class: Class
  one of: failed exploratory term
  one of: placeholder removed
  one of: terms merged
  one of: term imported
  one of: term split
  one of: out of scope
subclass of: data about an ontology part
editor preferred term: obsolescence reason specification
has curation status: pending final vetting
definition: The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value.
editor note: The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology.
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Melanie Courtot

textual entity
type: Class
subclass of: information content entity
editor preferred term: textual entity
example of usage: Words, sentences, paragraphs, and the written (non-figure) parts of publications are all textual entities
has curation status: metadata incomplete
definition: A textual entity is a part of a manifestation (FRBR sense), a generically dependent continuant whose concretizations are patterns of glyphs intended to be interpreted as words, formulas, etc.
editor note: AR, (IAO call 2009-09-01): a document as a whole is not typically a textual entity, because it has pictures in it - rather there are parts of it that are textual entities. Examples: The title, paragraph 2 sentence 7, etc.
editor note: MC, 2009-09-14 (following IAO call 2009-09-01): textual entities live at the FRBR (http://en.wikipedia.org/wiki/Functional_Requirements_for_Bibliographic_Records) manifestation level. Everything is significant: line break, pdf and html versions of same document are different textual entities.
definition editor: PERSON: Lawrence Hunter
alternative term: text
imported from: ico.owl
imported from: obi.owl

citation
type: Class
subclass of: textual entity
subclass of: Restriction
  on property: is about
  some values from: document
editor preferred term: citation
example of usage: Verspoor, K., Cohen, KB., Hunter, L. Textual characteristics of traditional and Open Access scientific journals are similar, BMC Bioinformatics 2009, 10:183.
has curation status: pending final vetting
definition: A textual entity intended to identify a particular publication.
definition editor: PERSON: Lawrence Hunter

author identification
type: Class
subclass of: written name
editor preferred term: author identification
example of usage: L. Hunter
has curation status: pending final vetting
definition: A textual entity intended to identify a particular author
definition editor: PERSON: Lawrence Hunter

institutional identification
type: Class
subclass of: textual entity
editor preferred term: institutional identification
example of usage: University of Colorado Denver School of Medicine
has curation status: pending final vetting
definition: A textual entity intended to identify a particular institution
definition editor: PERSON: Lawrence Hunter

caption
type: Class
subclass of: textual entity
subclass of: Restriction
  on property: is about
  some values from: figure
editor preferred term: caption
example of usage: Figure 1: A system diagram describing the modules of the Hanalyzer. Reading methods (green) take external sources of knowledge (blue) and extract information from them, either by parsing structured data or biomedical language processing to extract information from unstructured data. Reading modules are responsible for tracking the provenance of all knowledge. Reasoning methods (yellow) enrich the knowledge that results from reading by, for example, noting two genes that are annotated to the same ontology term or database entry. All knowledge sources, read or reasoned, are assigned a reliability score, and all are combined using that score into a knowledge network (orange) that represents the integration of all sorts of relationship between a pair of genes and a combined reliability score. A data network (also orange) is created from experimental results to be analyzed. The reporting modules (pink) integrate the data and knowledge networks, producing visualizations that can be queried with the associated drill-down tool.
has curation status: pending final vetting
definition: A textual entity that describes a figure
definition editor: PERSON: Lawrence Hunter

document title
type: Class
subclass of: textual entity
editor preferred term: document title
example of usage: Textual characteristics of traditional and Open Access scientific journals are similar
has curation status: pending final vetting
definition: A textual entity that names a document
definition editor: PERSON: Lawrence Hunter

table
type: Class
subclass of: textual entity
editor preferred term: table
example of usage: | T F --+----- T | T F F | F F
has curation status: pending final vetting
definition: A textual entity that contains a two-dimensional arrangement of texts repeated at regular intervals across a spatial range, such that the spatial relationships among the constituent texts expresses propositions
definition editor: PERSON: Lawrence Hunter

table of abbreviations
type: Class
subclass of: table
editor preferred term: table of abbreviations
example of usage: IAO information artifact ontology OBI ontology of biomedical investiations GO gene ontology
has curation status: pending final vetting
definition: A table where the constituent texts are abbreviations and their expansions
definition editor: PERSON: Lawrence Hunter

figure
type: Class
subclass of: information content entity
editor preferred term: figure
example of usage: Any picture, diagram or table
has curation status: metadata complete
definition: An information content entity consisting of a two dimensional arrangement of information content entities such that the arrangement itself is about something.
definition editor: PERSON: Lawrence Hunter

diagram
type: Class
subclass of: figure
editor preferred term: diagram
example of usage: A molecular structure ribbon cartoon showing helices, turns and sheets and their relations to each other in space.
has curation status: metadata complete
definition: A figure that expresses one or more propositions
definition editor: PERSON: Lawrence Hunter

document
type: Class
subclass of: information content entity
editor preferred term: document
example of usage: A journal article, patent application, laboratory notebook, or a book
has curation status: metadata complete
definition: A collection of information content entities intended to be understood together as a whole
definition editor: PERSON: Lawrence Hunter
imported from: ico.owl
imported from: obi.owl

publication
type: Class
equivalent class: Class
  intersection of: document
  intersection of: Restriction
    on property: is specified output of
    all values from: publishing process
subclass of: document
editor preferred term: publication
example of usage: journal article, newspaper story, book, etc.
has curation status: metadata complete
definition: A document that is the output of a publishing process.
definition editor: PERSON: Chris Stoeckert
definition editor: PERSON: Jie Zheng
definition editor: PERSON: Lawrence Hunter
alternative term: published document
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/232
comment: Revisit the term in Octorber 2020. Improve the defintion.

publication about an investigation
type: Class
subclass of: publication
subclass of: Restriction
  on property: is about
  some values from: investigation
editor preferred term: publication about an investigation
example of usage: Most scientific journal articles
has curation status: metadata complete
definition: A publication that is about an investigation
definition editor: PERSON: Lawrence Hunter
alternative term: scientific publication

patent
type: Class
subclass of: document
editor preferred term: patent
example of usage: US Patent 6,449,603
has curation status: metadata complete
definition: A document that has been accepted by a patent authority
definition editor: PERSON: Lawrence Hunter

document part
type: Class
subclass of: information content entity
subclass of: Restriction
  on property: part of
  some values from: document
editor preferred term: document part
example of usage: An abstract, introduction, method or results section.
has curation status: metadata complete
definition: An information content entity that is part of a document.
definition editor: PERSON: Lawrence Hunter

abstract
type: Class
subclass of: document part
subclass of: Restriction
  on property: is about
  some values from: document
editor preferred term: abstract
example of usage: The profusion of high-throughput instruments and the explosion of new results in the scientific literature, particularly in molecular biomedicine, is both a blessing and a curse to the bench researcher. Even knowledgeable and experienced scientists can benefit from computational tools that help navigate this vast and rapidly evolving terrain. In this paper, we describe a novel computational approach to this challenge, a knowledge-based system that combines reading, reasoning and reporting methods to facilitate analysis of experimental data. Reading methods extract information from external resources, either by parsing structured data or biomedical language processing to extract information from unstructured data, and track knowledge provenance. Reasoning methods enrich the knowledge that results from reading by, for example, noting two genes that are annotated to the same ontology term or database entry. Reasoning is also used to combine all sources into a knowledge network that represents the integration of all sorts of relationships between a pair of genes, and to calculate a combined reliability score. Reporting methods combine the knowledge network with a congruent network constructed from experimental data and visualize the combined network in a tool that facilitates the knowledge-based analysis of that data.
has curation status: metadata complete
definition: A summary of the entire document that is substantially smaller than the document it summarizes. It is about the document it summarizes.
definition editor: PERSON: Lawrence Hunter
alternative term: precis
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/234

introduction to a publication about an investigation
type: Class
subclass of: document part
subclass of: Restriction
  on property: is about
  some values from: objective specification
editor preferred term: introduction to a publication about an investigation
example of usage: Section labelled 'introduction' of a typical scientific journal article
has curation status: metadata complete
definition: A part of a publication about an investigation that is about the objective specification (why the investigation is being done)
definition editor: PERSON: Lawrence Hunter
alternative term: background
alternative term: introduction
alternative term: overview
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/234

methods section
type: Class
subclass of: document part
subclass of: Restriction
  on property: is about
  some values from: study design
editor preferred term: methods section
example of usage: The section labelled 'Methods' or 'Materials and Methods' in a typical scientific journal article.
has curation status: metadata complete
definition: A part of a publication about an investigation that is about the study design of the investigation
definition editor: PERSON: Lawrence Hunter
alternative term: experimental
alternative term: experimental methods
alternative term: experimental procedures
alternative term: experimental section
alternative term: method
alternative term: methodology
alternative term: methods
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/234

results section
type: Class
subclass of: document part
subclass of: Restriction
  on property: is about
  some values from: study design execution
editor preferred term: results section
example of usage: The section labelled 'results' in a typical scientific journal article
has curation status: metadata complete
definition: A part of a publication about an investigation that is about a study design execution
definition editor: PERSON: Lawrence Hunter
alternative term: results

discussion section of a publication about an investigation
type: Class
subclass of: document part
editor preferred term: discussion section of a publication about an investigation
has curation status: metadata complete
definition: A part of a publication about an investigation that is about the study interpretation of the investigation
definition editor: PERSON: Lawrence Hunter
alternative term: discussion
alternative term: discussion section
alternative term: discussions
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/234

references section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: citation
editor preferred term: references section
example of usage: The list of citations found at the end of a scientific publication, grant proposal or patent application, sometimes called "literature cited" or "bibliography"
has curation status: metadata complete
definition: A part of a document that has citations as parts
definition editor: PERSON: Lawrence Hunter
alternative term: literature cited
alternative term: reference
alternative term: reference list
alternative term: references
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/234

author list
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: author identification
editor preferred term: author list
example of usage: Lawrence Hunter and Kevin Brettonel Cohen
has curation status: metadata complete
definition: A part of a document that enumerates the authors of the document
definition editor: PERSON: Lawrence Hunter

institution list
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: institutional identification
editor preferred term: institution list
example of usage: The University of Colorado Denver School of Medicine and the University of Colorado Boulder.
has curation status: metadata complete
definition: A part of a document that has parts that are institution identifications associated with the authors of the document
definition editor: PERSON: Lawrence Hunter

author contributions section
type: Class
subclass of: document part
editor preferred term: author contributions section
example of usage: LH conceived of the hypothesis, designed the study and contributed to the writing of the manuscript. KBC executed the experiments, analyzed the data, and contributed to the writing of the manuscript.
has curation status: metadata complete
definition: A part of a publication that is about the specific contributions of each author
definition editor: PERSON: Lawrence Hunter
alternative term: author contributions
alternative term: authors' contribution
alternative term: authors' contributions
alternative term: authors' roles
alternative term: contributions by the authors
alternative term: contributorship
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/234

acknowledgements section
type: Class
subclass of: document part
editor preferred term: acknowledgements section
example of usage: The authors wish to thank Alan Ruttenberg for his constructive comments about an earlier draft of this manuscript
has curation status: metadata complete
definition: Part of a publication that is about the contributions of people or institutions other than the authors.
definition editor: PERSON: Lawrence Hunter
alternative term: acknowledgement
alternative term: acknowledgements
alternative term: acknowledgment
alternative term: acknowledgments
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/234

footnote
type: Class
subclass of: document part
subclass of: Restriction
  on property: is about
  some values from: document part
editor preferred term: footnote
example of usage: The referent in the text is usually indicated by a special typographic character such as * or a superscripted number, which is also used to indicate the footnote that refers to that text.
has curation status: metadata complete
definition: A part of a document that is about a specific other part of the document. Usually footnotes are spatially segregated from the rest of the document.
definition editor: PERSON: Lawrence Hunter
alternative term: endnote
alternative term: footnotes
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/234

supplementary material to a document
type: Class
subclass of: document part
editor preferred term: supplementary material to a document
has curation status: metadata complete
definition: A part of a document that is segregated from the rest of the document due to its size
definition editor: PERSON: Lawrence Hunter
alternative term: additional file
alternative term: additional files
alternative term: additional information
alternative term: appendix
alternative term: electronic supplementary material
alternative term: electronic supplementary materials
alternative term: supplemental data
alternative term: supplemental information
alternative term: supplemental material
alternative term: supplementary data
alternative term: supplementary files
alternative term: supplementary information
alternative term: supplementary material
alternative term: supplementary materials
alternative term: supporting information
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/234

table of contents
type: Class
subclass of: table
editor preferred term: table of contents
has curation status: pending final vetting
definition: A table that relates document parts to specific locations in a document (usually page numbers). This is also a document part (subsumption there should be inferred).
definition editor: PERSON: Lawrence Hunter

table of figures
type: Class
subclass of: table
editor preferred term: table of figures
has curation status: pending final vetting
definition: A table that relates figures in a document to specific locations in that document (usually page numbers). This is also a document part (subsumption there should be inferred).
definition editor: PERSON: Lawrence Hunter

running title
type: Class
subclass of: document title
editor preferred term: running title
has curation status: pending final vetting
definition: A shorter version of a document title
definition editor: PERSON: Lawrence Hunter

copyright section
type: Class
subclass of: document part
editor preferred term: copyright section
example of usage: This work is licensed under a Creative Commons Attribution-Share Alike 3.0 United States License.
has curation status: metadata complete
definition: A document part that describes legal restrictions on making or distributing copies of the document
definition editor: PERSON: Lawrence Hunter

cartesian spatial coordinate datum
type: Class
subclass of: data item
subclass of: Restriction
  on property: denotes
  some values from: zero-dimensional spatial region
subclass of: Restriction
  on property: has coordinate unit label
  cardinality: 1
has curation status: metadata complete
definition: A cartesian spatial coordinate datum is a representation of a point in a spatial region, in which equal changes in the magnitude of a coordinate value denote length qualities with the same magnitude
editor note: 2009-08-18 Alan Ruttenberg - question to BFO list about whether the BFO sense of the lower dimensional regions is that they are always part of actual space (the three dimensional sort) http://groups.google.com/group/bfo-discuss/browse_thread/thread/9d04e717e39fb617
definition editor: Alan Ruttenberg
curator note: AR notes: We need to discuss whether it should include site.

one dimensional cartesian spatial coordinate datum
type: Class
subclass of: cartesian spatial coordinate datum
subclass of: Restriction
  on property: denotes
  some values from: Class
    intersection of: zero-dimensional spatial region
    intersection of: Restriction
      on property: part of
      some values from: one-dimensional spatial region
subclass of: Restriction
  on property: has x coordinate value
  cardinality: 1
has curation status: metadata incomplete
definition: A cartesion spatial coordinate datum that uses one value to specify a position along a one dimensional spatial region
definition editor: Alan Ruttenberg

two dimensional cartesian spatial coordinate datum
type: Class
subclass of: cartesian spatial coordinate datum
subclass of: Restriction
  on property: denotes
  some values from: Class
    intersection of: zero-dimensional spatial region
    intersection of: Restriction
      on property: part of
      some values from: two-dimensional spatial region
subclass of: Restriction
  on property: has x coordinate value
  cardinality: 1
subclass of: Restriction
  on property: has y coordinate value
  cardinality: 1
has curation status: metadata incomplete
definition: A cartesion spatial coordinate datum that uses two values to specify a position within a two dimensional spatial region
definition editor: Alan Ruttenberg

three dimensional cartesian spatial coordinate datum
type: Class
subclass of: cartesian spatial coordinate datum
subclass of: Restriction
  on property: denotes
  some values from: Class
    intersection of: zero-dimensional spatial region
    intersection of: Restriction
      on property: part of
      some values from: three-dimensional spatial region
subclass of: Restriction
  on property: has x coordinate value
  cardinality: 1
subclass of: Restriction
  on property: has z coordinate value
  cardinality: 1
subclass of: Restriction
  on property: has y coordinate value
  cardinality: 1
has curation status: metadata incomplete
definition: A cartesion spatial coordinate datum that uses three values to specify a position within a three dimensional spatial region
definition editor: Alan Ruttenberg

length measurement datum
type: Class
subclass of: scalar measurement datum
subclass of: Restriction
  on property: has measurement unit label
  some values from: length unit
subclass of: Restriction
  on property: is quality measurement of
  some values from: length
has curation status: metadata incomplete
definition: A scalar measurement datum that is the result of measurement of length quality
definition editor: Alan Ruttenberg

denotator type
type: Class
equivalent class: Class
  one of: universal
  one of: defined class
  one of: named class expression
subclass of: data about an ontology part
editor preferred term: denotator type
example of usage: The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are "natural kinds" and the latter arbitrary collections of entities.
definition: A denotator type indicates how a term should be interpreted from an ontological perspective.
definition editor: Alan Ruttenberg
definition source: Barry Smith, Werner Ceusters

mass measurement datum
type: Class
subclass of: scalar measurement datum
subclass of: Class
  intersection of: Restriction
    on property: has measurement unit label
    all values from: mass unit
  intersection of: Restriction
    on property: is quality measurement of
    all values from: mass
has curation status: metadata incomplete
definition: A scalar measurement datum that is the result of measurement of mass quality
editor note: 2009/09/28 Alan Ruttenberg. Fucoidan-use-case
definition editor: Person:Alan Ruttenberg

hypothesis textual entity
type: Class
subclass of: textual entity
editor preferred term: hypothesis textual entity
example of usage: that fucoidan has a small statistically significant effect on AT3 level but no useful clinical effect as in-vivo anticoagulant, a paraphrase of part of the last paragraph of the discussion section of the paper 'Pilot clinical study to evaluate the anticoagulant activity of fucoidan', by Lowenthal et. al.PMID:19696660
has curation status: metadata complete
definition: A textual entity that expresses an assertion that is intended to be tested.
editor note: 2009/09/28 Alan Ruttenberg. Fucoidan-use-case
definition editor: Person:Alan Ruttenberg

time measurement datum
type: Class
subclass of: scalar measurement datum
subclass of: Class
  intersection of: Restriction
    on property: has measurement unit label
    all values from: time unit
  intersection of: Restriction
    on property: is duration of
    all values from: process
has curation status: metadata incomplete
definition: A scalar measurement datum that is the result of measuring a temporal interval
editor note: 2009/09/28 Alan Ruttenberg. Fucoidan-use-case
definition editor: Person:Alan Ruttenberg

postal address
type: Class
subclass of: textual entity
has curation status: metadata incomplete
definition: A textual entity that is used as directive to deliver something to a person, or organization
editor note: 2010-05-24 Alan Ruttenberg. Use label for the string representation. See issue https://github.com/information-artifact-ontology/IAO/issues/59

email address
type: Class
subclass of: information content entity
editor preferred term: email address
has curation status: metadata incomplete
editor note: Alan Ruttenberg 1/3/2012 - Provisional id, see issue at https://github.com/information-artifact-ontology/IAO/issues/130&thanks=130&ts=1325636583
definition editor: Person:Alan Ruttenberg
definition editor: Person:Chris Stoeckart

author role
type: Class
subclass of: role
editor preferred term: author role
has curation status: pending final vetting
definition: A role inhering in a person or organization that is realized when the bearer participates in the work which is the basis of the document, in the writing of the document, and signs it with their name.
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Melanie Courtot

data item extraction from journal article
type: Class
subclass of: planned process
subclass of: Restriction
  on property: has_specified_input
  some values from: journal article
subclass of: Restriction
  on property: has_specified_output
  some values from: data item
has curation status: metadata complete
definition: A planned process in which journal articles are read or processed and data items are extracted, typically for further analysis or indexing
definition editor: Person:Alan Ruttenberg

publishing process
type: Class
subclass of: planned process
has curation status: metadata complete
definition: A planned process of making information, such as literature, music, and software etc., available to the public for sale or for free.
definition editor: Person: Jie Zheng
definition source: https://en.wikipedia.org/wiki/Publishing
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/232
ontology term requester: VEuPathDB

document in preparation for publication
type: Class
subclass of: document
has curation status: metadata complete
definition: A document that is in preparation for submission to be published.
definition editor: PERSON: Jie Zheng
definition source: EFO_0001795 in preparation
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/232
ontology term requester: VEuPathDB

documenting
type: Class
subclass of: planned process
subclass of: Restriction
  on property: has_specified_input
  some values from: information content entity
subclass of: Restriction
  on property: has_specified_output
  some values from: document
editor preferred term: documenting
example of usage: Recording the current temperature in a laboratory notebook. Writing a journal article. Updating a patient record in a database.
has curation status: pending final vetting
definition: A planned process in which a document is created or added to by including the specified input in it.
definition: a planned process in which a document is created or added to by including the specified input in it.
editor note: 6/11/9: Edited at OBI workshop. We need to be able identify a child form of information artifact which corresponds to something enduring (not brain like). This used to be restricted to physical document or digital entity as the output, but that excludes e.g. an audio cassette tape
definition editor: Bjoern Peters
definition source: wikipedia http://en.wikipedia.org/wiki/Documenting
imported from: ico.owl
imported from: obi.owl
term_mapping_to_UMLS: C1548385
term_mapping_to_HL7v3: 11609

line graph
type: Class
subclass of: graph
editor preferred term: line graph
has curation status: ready for release
definition: A line graph is a type of graph created by connecting a series of data points together with a line.
definition editor: PERSON:Chris Stoeckert
definition editor: PERSON:Melanie Courtot
alternative term: line chart
definition source: GROUP:OBI
definition source: WEB: http://en.wikipedia.org/wiki/Line_chart

assigning a centrally registered identifier
type: Class
subclass of: planned process
subclass of: Restriction
  on property: has_specified_output
  some values from: centrally registered identifier symbol
subclass of: Restriction
  on property: has participant
  some values from: centrally registered identifier registry
example of usage: A new pubmed ID being created for a journal article, and the associated pubmed record containing information to the journal article. A license plate number registered at the DMV to be belonging to a specific vehicle and owner. Placing a barcode on a product and entering information in a database that this barcode is assigned.
has curation status: metadata complete
definition: A planned process in which a new CRID is created, associated with an entity, and stored in the CRID registry thereby registering it as being associated with some entity
editor note: 2014-05-05: It is the CRID registry that assigns CRIDs, not the users of the registry.
definition editor: Person:Alan Ruttenberg
definition editor: Person:Bjoern Peters
definition editor: Person:Melanie Courtot
alternative term: assigning a CRID

associating information with a centrally registered identifier in its registry
type: Class
subclass of: planned process
subclass of: Restriction
  on property: has_specified_input
  some values from: centrally registered identifier symbol
subclass of: Restriction
  on property: has participant
  some values from: centrally registered identifier registry
example of usage: Articles in Pubmed are reviewed by curators who add MESH terms to the Pubmed records in order to categorize them better and improve the ability to search for them.
has curation status: metadata complete
definition: A planned process in which a CRID registry associates an information content entity with a CRID symbol
definition editor: PERSON:Alan Ruttenberg
alternative term: associating information with a CRID in the CRID registry

obsolete_establishing a CRID registry
type: Class
subclass of: ObsoleteClass
definition: a planned process with the objective to establish a system that allows to refer to specific entities of a certain kind and store information about them, by establishing a CRID registry and plan specifications for the process of 1) assigning a CRID and 2) looking up a CRID.
editor note: MC, 20101124: deprecated following discussion at IAO call 20101124. Term was deemed not necessary - no use case for now.
has obsolescence reason: failed exploratory term
deprecated: true

centrally registered identifier symbol
type: Class
subclass of: symbol
subclass of: Restriction
  on property: part of
  some values from: centrally registered identifier
example of usage: The sentence "The article has Pubmed ID 12345." contains a CRID that has two parts: one part is the CRID symbol, which is '12345'; the other part denotes the CRID registry, which is Pubmed.
has curation status: metadata complete
definition: A symbol that is part of a CRID and that is sufficient to look up a record from the CRID's registry.
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Bill Hogan
definition editor: PERSON: Bjoern Peters
definition editor: PERSON: Melanie Courtot
alternative term: CRID symbol
definition source: Original proposal from Bjoern, discussions at IAO calls

centrally registered identifier
type: Class
subclass of: identifier
subclass of: Restriction
  on property: has part
  some values from: centrally registered identifier symbol
subclass of: Restriction
  on property: has part
  some values from: Restriction
    on property: denotes
    some values from: centrally registered identifier registry
example of usage: The sentence "The article has Pubmed ID 12345." contains a CRID that has two parts: one part is the CRID symbol, which is '12345'; the other part denotes the CRID registry, which is Pubmed.
has curation status: metadata complete
definition: An information content entity that consists of a CRID symbol and additional information about the CRID registry to which it belongs.
editor note: 2014-05-05: In defining this term we take no position on what the CRID denotes. In particular do not assume it denotes a *record* in the CRID registry (since the registry might not have 'records').
editor note: Alan, IAO call 20101124: potentially the CRID denotes the instance it was associated with during creation.
editor note: Note, IAO call 20101124: URIs are not always CRID, as not centrally registered. We acknowledge that CRID is a subset of a larger identifier class, but this subset fulfills our current needs. OBI PURLs are CRID as they are registered with OCLC. UPCs (Universal Product Codes from AC Nielsen)are not CRID as they are not centrally registered.
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Bill Hogan
definition editor: PERSON: Bjoern Peters
definition editor: PERSON: Melanie Courtot
alternative term: CRID
definition source: Original proposal from Bjoern, discussions at IAO calls

centrally registered identifier registry
type: Class
subclass of: code set
example of usage: PubMed is a CRID registry. It has a code set of PubMed identifiers associated with journal articles.
has curation status: metadata complete
definition: A code set of CRID records, each consisting of a CRID symbol and additional information which was recorded in the code set through an assigning a centrally registered identifier process.
definition editor: Justin Whorton
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Bill Hogan
definition editor: PERSON: Bjoern Peters
definition editor: PERSON: Melanie Courtot
alternative term: CRID registry
definition source: Original proposal from Bjoern, discussions at IAO calls
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/237

looking up a centrally registered identifier
type: Class
subclass of: planned process
subclass of: Restriction
  on property: has_specified_input
  some values from: centrally registered identifier symbol
subclass of: Restriction
  on property: has_specified_output
  some values from: information content entity
subclass of: Restriction
  on property: has participant
  some values from: centrally registered identifier registry
example of usage: Going to the PubMed website and entering a PubMed ID in order to retrieve the Pubmed information associated with that ID.
has curation status: metadata complete
definition: A planned process in which a request to a CRID registry is made to return the information associated with a CRID symbol
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Bill Hogan
definition editor: PERSON: Bjoern Peters
definition editor: PERSON: Melanie Courtot
alternative term: looking up a CRID

time stamped measurement datum
type: Class
subclass of: measurement datum
subclass of: Class
  intersection of: Restriction
    on property: has time stamp
    some values from: time measurement datum
  intersection of: Restriction
    on property: has measurement datum
    some values from: measurement datum
has curation status: metadata incomplete

time sampled measurement data set
type: Class
subclass of: data set
subclass of: Restriction
  on property: has part
  some values from: time stamped measurement datum
example of usage: pmid:20604925 - time-lapse live cell microscopy
has curation status: metadata complete
definition: A data set that is an aggregate of data recording some measurement at a number of time points. The time series data set is an ordered list of pairs of time measurement data and the corresponding measurement data acquired at that time.
definition editor: Alan Ruttenberg
alternative term: experimental time series

written name
type: Class
subclass of: textual entity
editor preferred term: written name
example of usage: "Bill Clinton"
example of usage: "The Eiffel Tower"
example of usage: "United States of America"
has curation status: pending final vetting
definition: A textual entity that denotes a particular in reality.
definition editor: PERSON: Bill Hogan
definition source: https://github.com/information-artifact-ontology/IAO/issues/114
curator note: The qualifier "written" is to set it apart from spoken names. Also, note the restrictions to particulars. We are not naming universals. We could however, be naming, attributive collections which are particulars, so "All people located in the boundaries of the city of Little Rock, AR on June 18, 2011 at 9:50a CDT" would be a name.

software method
type: Class
subclass of: software
has curation status: metadata incomplete
definition: A software method (also called subroutine, subprogram, procedure, method, function, or routine) is software designed to execute a specific task.
definition editor: PERSON: Melanie Courtot
definition editor: PERSON: Michel Dumontier
definition source: https://github.com/information-artifact-ontology/IAO/issues/80

software module
type: Class
subclass of: software
has curation status: metadata incomplete
definition: A software module is software composed of a collection of software methods.
definition editor: PERSON: Melanei Courtot
definition editor: PERSON: Michel Dumontier
definition source: https://github.com/information-artifact-ontology/IAO/issues/80

software library
type: Class
subclass of: software
has curation status: metadata incomplete
definition: A software library is software composed of a collection of software modules and/or software methods in a form that can be statically or dynamically linked to some software application.
definition editor: PERSON: Melanie Courtot
definition editor: PERSON: Michel Dumontier
definition source: https://github.com/information-artifact-ontology/IAO/issues/80

software application
type: Class
subclass of: software
has curation status: metadata incomplete
definition: A software application is software that can be directly executed by some processing unit.
definition editor: PERSON: Melanie Courtot
definition editor: PERSON: Michel Dumontier
definition source: https://github.com/information-artifact-ontology/IAO/issues/80

software script
type: Class
subclass of: software
has curation status: metadata incomplete
definition: A software script is software whose instructions can be executed using a software interpreter.
definition editor: PERSON: Melanie Courtot
definition editor: PERSON: Michel Dumontier
definition source: https://github.com/information-artifact-ontology/IAO/issues/80

abbreviation textual entity
type: Class
subclass of: textual entity
editor preferred term: abbreviation textual entity
example of usage: From Shiba et al. Acta Neuropathol Commun. 2013; 1: 45. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3893467/): BAC: Bacterial artificial chromosome; CR: Calretinin; GFAP: Glial fibrillary acidic protein; MAP: Microtubule-associated protein; MRI: Magnetic resonance imaging; NSC: Neural stem cell; PDA: Patent ductus arteriosus; PMG: Polymicrogyria; PNH: Periventricular nodular heterotopia; VSD: Ventricular septal defect.
definition: A textual entity listing abbreviations and their expansions that are used in a document.
definition editor: PERSON: Bill Baumgartner
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

abbreviations section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: abbreviation textual entity
editor preferred term: abbreviations section
example of usage: The section labelled 'abbreviations' in a typical scientific journal article.
definition: A part of a document where abbreviations and their long-forms used within the document are listed.
definition editor: PERSON: Bill Baumgartner
alternative term: abbreviation and acronyms
alternative term: abbreviation list
alternative term: abbreviations
alternative term: abbreviations and acronyms
alternative term: abbreviations list
alternative term: abbreviations used
alternative term: definitions for abbreviations
alternative term: list of abbreviations
alternative term: list of abbreviations used
alternative term: non-standard abbreviations
alternative term: nonstandard abbreviations
alternative term: nonstandard abbreviations and acronyms
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/234

author information section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: author information textual entity
editor preferred term: author information section
example of usage: The section labelled 'author information' in a typical scientific journal article, e.g. in Takon. Ann Gen Psychiatry. 2011; 10: 25. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3204268/)
definition: A part of a document about the authors that provides biographical information and may discuss how the authors' professional experiences are relevant to the work described in the document.
definition editor: PERSON: Bill Baumgartner
alternative term: author information
alternative term: authors’ information
alternative term: biographies
alternative term: contributor information
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/234

author information textual entity
type: Class
subclass of: textual entity
editor preferred term: author information textual entity
example of usage: From Takon. Ann Gen Psychiatry. 2011; 10: 25. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3204268/): IT [the author] is the lead paediatrician for ADHD services in East Hertfordshire, UK, where she runs a weekly joint ADHD clinic with the Child and Adolescent psychiatrist and works within an ADHD specialist team. IT also sees children with other neurodisability issues who may have comorbid ADHD, where the presentation may be more complex and challenging to manage. IT has vast experience in managing children with complex ADHD. She has 18 years of experience in paediatrics and also has extensive experience in the use of psychopharmacologic agents in managing children with ADHD.
definition: A textual entity expression information about an author of a document. This information may include biographical information and may discuss how the authors' professional experiences are relevant to the work described in the document.
definition editor: PERSON: Bill Baumgartner
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

author summary section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: author summary textual entity
editor preferred term: author summary section
example of usage: The section labelled 'synopsis' in a typical scientific journal article, e.g. in Pendse et al. BMC Genomics. 2013; 14: 136. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3608171/)
definition: A part of a document, distinct from the abstract, that describes the significance and broader context of the document content. The author summary is often written in a non-technical manner and is aimed at both scientists and non-scientist readers.
definition editor: PERSON: Bill Baumgartner
alternative term: author summary
alternative term: summary
alternative term: synopsis
definition source: Article submission guidelines for PLoS Genetics (http://journals.plos.org/plosgenetics/s/submission-guidelines)
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

author summary textual entity
type: Class
subclass of: textual entity
editor preferred term: author summary textual entity
example of usage: From Pendse et al. BMC Genomics. 2013; 14: 136. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3608171/): The search for genetic risk factors for common human diseases often relies on the use of linkage and association studies to establish correlation between genomic markers and disease risk. These studies require additional functional evaluation of candidate genes, including their possible interaction with diet and environment. The number of candidate genes is typically large and the development of appropriate genetic tools in mammalian systems is slow. By contrast, large-scale genetic screens, using widely available genetic tools, are routinely conducted in the fruit fly Drosophila melanogaster. In this study, we used Drosophila to screen candidate genes identified in human genome-wide scans as associated with risk of metabolic abnormalities such as type 2 diabetes. We show that a number of human candidate genes have fly orthologs that play an important role in Drosophila tolerance to high dietary sucrose. We further explored some of the specific metabolic abnormalities that can result when these genes’ activities are reduced in flies, focusing on a gene we call dHHEX (CG7056), the fly ortholog of human HHEX.
definition: A textual entity, distinct from the abstract, that describes the significance and broader context of the document content. The author summary is often written in a non-technical manner and is aimed at both scientists and non-scientist readers, e.g as described in the article submission guidelines for PLoS Genetics (http://journals.plos.org/plosgenetics/s/submission-guidelines).
definition editor: PERSON: Bill Baumgartner
definition source: Article submission guidelines for PLoS Genetics (http://journals.plos.org/plosgenetics/s/submission-guidelines).
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

availability section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: availability textual entity
editor preferred term: availability section
example of usage: The section labelled 'availability and requirements' in a typical scientific journal article, e.g. Qi et al. BMC Bioinformatics. 2014; 15: 11. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897912/).
definition: A part of a document about a resource described in the document, e.g. software, that describes where and/or how that resource can be obtained.
definition editor: PERSON: Bill Baumgartner
alternative term: availability
alternative term: availability of data
alternative term: data archiving
alternative term: data availability
alternative term: data availability statement
alternative term: data sharing statement
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/234

availability textual entity
type: Class
subclass of: textual entity
editor preferred term: availability textual entity
example of usage: From Qi et al. BMC Bioinformatics. 2014; 15: 11. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897912/): Project home page:http://krux.googlecode.com
definition: A textual entity expressing the location of a resource, e.g. software, or the manner in which a resource can be obtained.
definition editor: PERSON: Bill Baumgartner
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

case report section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: case report textual entity
editor preferred term: case report section
example of usage: The section labelled 'case report' in a typical scientific journal article, e.g. in Taglia et al. Acta Myol. 2012 Dec; 31(3): 201–203. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3631801/)
definition: A part of a document about the medical history of a specific patient as it relates to the topic of the document.
definition editor: PERSON: Bill Baumgartner
alternative term: case presentation
alternative term: case report
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

case report textual entity
type: Class
subclass of: textual entity
editor preferred term: case report textual entity
example of usage: Excerpt from Taglia et al. Acta Myol. 2012 Dec; 31(3): 201–203. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3631801/): The patient is a 50-year-old man. His medical history was not contributory. At the age of 37 years, he complained of persistent fatigue and dyspnoea even for modest efforts and oedema of lower limbs. The patient was examined at the department of internal medicine of the local hospital, and hospitalised with a diagnosis of dilated cardiomyopathy probably consequence of a myocarditis process. Soon after he was transferred to the cardiologic department of the regional hospital, and pharmacologically treated for heart failure and pulmonary hypertension.
definition: A textual entity that expresses a detailed account of a portion of the medical history for a specific patient.
definition editor: PERSON: Bill Baumgartner
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

conclusion section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: conclusion textual entity
editor preferred term: conclusion section
example of usage: The section labelled 'conclusion' in a typical scientific journal article.
definition: A part of a document used to summarize the findings discussed in the document. The conclusion section is typically found near the end of a document.
definition editor: PERSON: Bill Baumgartner
alternative term: concluding remarks
alternative term: conclusion
alternative term: conclusions
alternative term: findings
alternative term: summary
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

conflict of interest section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: conflict of interest textual entity
editor preferred term: conflict of interest section
example of usage: The section labelled 'conflict of interest statement' in a typical scientific journal article.
definition: A part of a document used to declare any competing interests regarding the authors and/or funding organization for the work described in the document.
definition editor: PERSON: Bill Baumgartner
alternative term: authors' disclosures of potential conflicts of interest
alternative term: competing financial interests
alternative term: competing interests
alternative term: conflict of interest
alternative term: conflict of interest statement
alternative term: conflict of interests
alternative term: conflicts of interest
alternative term: declaration of competing interest
alternative term: declaration of competing interests
alternative term: declaration of interest
alternative term: declaration of interests
alternative term: disclosure of conflict of interest
alternative term: disclosure of potential conflicts of interest
alternative term: duality of interest
alternative term: statement of interest
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/234

conflict of interest textual entity
type: Class
subclass of: textual entity
editor preferred term: conflict of interest statement
example of usage: SD [an author] is a Merck employee and Merck is the sponsor of this study. [Taken from 'Effects of obstructive sleep apnoea risk on postoperative respiratory complications: protocol for a hospital-based registry study' Shin et al. 2016 (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4735131/)]
definition: A textual entity that expresses a situation involving one or more of the authors, or the funding source of a document whereby the authors or funding source stand to potentially gain (typically financially) from the results reported in the document.
definition editor: PERSON: Bill Baumgartner
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

consent section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: consent textual entity
editor preferred term: consent section
example of usage: The section labelled 'consent' in a typical scientific journal article, e.g. Shiba et al. Acta Neuropathol Commun. 2013; 1: 45. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3893467/)
definition: A part of a document about the consent process that was used to enroll patients in a study.
definition editor: PERSON: Bill Baumgartner
alternative term: consent
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

consent textual entity
type: Class
subclass of: textual entity
editor preferred term: consent textual entity
example of usage: From Shiba et al. Acta Neuropathol Commun. 2013; 1: 45. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3893467/): Written informed consent was obtained from the patient’s parents for publication of this Case report and any accompanying images. A copy of the written consent is available for review by the Editor-in chief of this journal.
definition: A textual entity that documents the consenting process used to enroll patients in a study.
definition editor: PERSON: Bill Baumgartner
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

ethical approval section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: ethical approval textual entity
editor preferred term: ethical approval section
example of usage: The section labelled 'ethical approval' in a typical scientific journal article.
definition: A part of a document about the governance body responsible for approving the work discussed in a document on an ethical basis.
definition editor: PERSON: Bill Baumgartner
alternative term: ethical approval
alternative term: ethical requirements
alternative term: ethics
alternative term: ethics statement
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/234

ethical approval textual entity
type: Class
subclass of: textual entity
subclass of: Restriction
  on property: is about
  some values from: study design
editor preferred term: ethical approval textual entity
example of usage: From McLean et al. Br J Gen Pract. 2014 Jul; 64(624): e440–e447 (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073730/): The NHS National Research Ethics Service had previously approved the use of these anonymised data for research purposes and this analysis did not require independent review.
definition: A textual entity that documents the ethical approval of some study design.
definition editor: PERSON: Bill Baumgartner
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

figures section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: figure
editor preferred term: figures section
example of usage: The section labelled 'figures' in a typical scientific journal article.
definition: A part of a document that contains one or more figures.
definition editor: PERSON: Bill Baumgartner
alternative term: figures
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

funding source declaration section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: funding source declaration textual entity
editor preferred term: funding source declaration section
example of usage: The section labelled 'funding' in a typical scientific journal article.
definition: A part of a document used to detail information regarding the source of funding used in support of the generation of the document content.
definition editor: PERSON: Bill Baumgartner
alternative term: financial support
alternative term: funding
alternative term: funding information
alternative term: funding sources
alternative term: funding statement
alternative term: funding/support
alternative term: grants
alternative term: role of the funding source
alternative term: source of funding
alternative term: sources of funding
alternative term: study funding
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/234

funding source declaration textual entity
type: Class
subclass of: textual entity
editor preferred term: funding souce declaration textual entity
example of usage: From Stephan et al. Accid Anal Prev. 2011 May; 43(3): 1062–1067. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3062852/): This study was supported by the International Collaborative Research Grants Scheme with joint grants from the Wellcome Trust UK (GR071587MA) and the Australian NHMRC (268055). The funding sources played no role in study design, data collection, analysis or interpretation, writing the report, or the decision to submit the paper for publication.
definition: A textual entity documenting the source of funding that supported some study.
definition editor: PERSON: Bill Baumgartner
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

future directions section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: future directions textual entity
editor preferred term: future directions section
example of usage: The section labelled 'future directions' in a typical scientific journal article.
definition: A part of a document detailing extensions of the described work that may be implemented at some future point in time.
definition editor: PERSON: Bill Baumgartner
alternative term: future challenges
alternative term: future considerations
alternative term: future developments
alternative term: future directions
alternative term: future outlook
alternative term: future perspectives
alternative term: future plans
alternative term: future prospects
alternative term: future research
alternative term: future research directions
alternative term: future studies
alternative term: future work
alternative term: outlook
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/234

future directions textual entity
type: Class
subclass of: textual entity
editor preferred term: future directions textual entity
example of usage: Excerpt from Wang and Li. Acta Pharmacol Sin. 2016 Jan; 37(1): 25–33. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4722976/): In the future, several questions will need to be resolved regarding the physiological assembly of KCNQ channels and their functional implications in complex neural circuits. First, we still lack sufficiently selective inhibitors and activators among the KCNQ family members.
definition: A textual entity expressing ideas regarding future work relevant to work described in a document that could be done.
definition editor: PERSON: Bill Baumgartner
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

genome announcement section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: genome announcement textual entity
editor preferred term: genome announcement section
example of usage: The section labelled 'genome announcement' in a typical scientific journal article, e.g. in Kim et al. J Bacteriol. 2011 Oct; 193(19): 5537. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3187466/)
definition: A document part announcing the publication of a novel draft genome sequence.
definition editor: PERSON: Bill Baumgartner
alternative term: genome announcement
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

genome announcement textual entity
type: Class
subclass of: textual entity
editor preferred term: genome announcement textual entity
example of usage: Excerpt from Kim et al. J Bacteriol. 2011 Oct; 193(19): 5537. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3187466/): Here we report the genome sequence of Lactobacillus malefermentans KCTC 3548, which we obtained using a whole-genome shotgun strategy (4) with Roche 454 GS (FLX Titanium) pyrosequencing (257,559 reads totaling ∼89.8 Mb; ∼45-fold coverage of the genome) at the Genome Resource Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB).
definition: A textual entity that describes the generation and public release of a novel, draft genome sequence.
definition editor: PERSON: Bill Baumgartner
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

keyword textual entity
type: Class
subclass of: textual entity
editor preferred term: keyword textual entity
example of usage: From: Fu and Lin. Identification of gene-oriented exon orthology between human and mouse. BMC Genomics. 2012; 13(Suppl 1): S10. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3303729/): Exon orthology; alternative splicing; exon duplication; intron-exon structure.
definition: A textual entity listing keywords indicating the major theme(s) of a document.
definition editor: PERSON: Bill Baumgartner
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

keywords section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: keyword textual entity
editor preferred term: keywords section
example of usage: The section labelled 'keywords' in a typical scientific journal article.
definition: A part of a document where keywords selected by the author to categorize the major theme(s) of a document are listed.
definition editor: PERSON: Bill Baumgartner
alternative term: keywords
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

study limitations section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: study limitations textual entity
subclass of: Restriction
  on property: is about
  some values from: study design
editor preferred term: study limitations section
example of usage: The section labelled 'limitations' in a typical scientific journal article.
definition: A part of a document about biases or short comings related to the study design and execution.
definition editor: PERSON: Bill Baumgartner
alternative term: limitations
alternative term: study limitations
definition source: Author guidelines published by The Society for Academic Emergency Medicine. (http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1553-2712/homepage/ForAuthors.html)
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

study limitations textual entity
type: Class
subclass of: textual entity
editor preferred term: study limitations textual entity
example of usage: Excerpt from the Limitations section of Fermann et al 2015, Acad Emerg Med. 2015 Mar; 22(3): 299–307 (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4405051/). Owing to the nature of a post hoc study, any significant values must be interpreted with caution. In the current analysis, no multiple testing was conducted and p-values remain unadjusted. Moreover, a selection bias arising from the randomized open-label design of the original EINSTEIN PE study cannot be ruled out.
definition: A textual entity addressing a shortcoming or bias of a study design or execution.
definition editor: PERSON: Bill Baumgartner
definition source: Author guidelines published by The Society for Academic Emergency Medicine. (http://onlinelibrary.wiley.com/journal/10.1111/(ISSN)1553-2712/homepage/ForAuthors.html)
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

materials section
type: Class
subclass of: document part
editor preferred term: materials section
example of usage: The section labelled 'materials' in a typical scientific journal article, e.g. Nguyen et al. BMC Bioinformatics. 2010; 11: 279. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2889936/)
definition: A part of a document about the materials required to reproduce the content of the document.
definition editor: PERSON: Bill Baumgartner
alternative term: materials
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

notes section
type: Class
subclass of: document part
editor preferred term: notes section
example of usage: The section labelled 'notes' in a typical scientific journal article, e.g. McLean et al. Br J Gen Pract. 2014 Jul; 64(624): e440–e447 (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4073730/):
definition: A part of a document containing typically short notes about the document itself and/or the authors. Often the notes section contains subsections related to funding, competing interests, ethical approval, etc.
definition editor: PERSON: Bill Baumgartner
alternative term: notes
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

patients section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: patients textual entity
editor preferred term: patients section
example of usage: The section labelled 'patients' in a typical scientific journal article, e.g. in Citak et al. Acta Orthop. 2013 Jun; 84(3): 326–327. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3715825/)
definition: A part of a document about the patients that participated in a study.
definition editor: PERSON: Bill Baumgartner
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

patients textual entity
type: Class
subclass of: textual entity
editor preferred term: patients textual entity
example of usage: Excerpt from Citak et al. Acta Orthop. 2013 Jun; 84(3): 326–327. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3715825/): Between January 1996 and February 2012, we treated 4 patients with interprosthetic femoral fractures (3 of them women) (Figure 2) using a custom-made interposition device (Waldemar Link GmbH, Hamburg, Germany) (Figure 1). Mean age was 74 (59–86) years. The fractures occurred mean 18 (13–28) years after primary THA and mean 14 (10–17) years after primary TKA. At the latest follow-up, after mean 8 (0.5–16) years, revision surgery with a total femur replacement was required in 1 case due to aseptic loosening. No other complications requiring revision surgery occurred.
definition: A textual entity expressing information regarding the patients used in a study.
definition editor: PERSON: Bill Baumgartner
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

pre-publication history section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: pre-publication history textual entity
editor preferred term: pre-publication history section
example of usage: The section labelled 'pre-publication history' in a typical scientific journal article, e.g. in Xiao et al. BMC Anesthesiol. 2013; 13: 33. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4016475/)
definition: A part of the document about the publication history of a document. This section typically details dates of document submission to a journal and dates of any re-submissions as well as reviewer comments and responses to reviewers by the authors.
definition editor: PERSON: Bill Baumgartner
alternative term: notice of republication
alternative term: pre-publication history
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

pre-publication history textual entity
type: Class
subclass of: textual entity
editor preferred term: pre-publication history textual entity
example of usage: From Xiao et al. BMC Anesthesiol. 2013; 13: 33. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4016475/): The pre-publication history for this paper can be accessed here: http://www.biomedcentral.com/1471-2253/13/33/prepub
definition: A textual entity that expresses the pre-publication history (submission dates, reviewer comments, etc) for a document, often including a hyperlink to a web page detailing the information.
definition editor: PERSON: Bill Baumgartner
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

related work section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: related work textual entity
editor preferred term: related work section
example of usage: The section labelled 'related work' in a typical scientific journal article, e.g. Žitnik and Zupan. Bioinformatics. 2015 Jun 15; 31(12): i230–i239. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4542780/)
definition: A part of a document about work in other publications that is relevant to the content of the document.
definition editor: PERSON: Bill Baumgartner
alternative term: related literature
alternative term: related work
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

related work textual entity
type: Class
subclass of: textual entity
editor preferred term: related work textual entity
example of usage: Excerpt from Žitnik and Zupan. Bioinformatics. 2015 Jun 15; 31(12): i230–i239. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4542780/): Our work presented here is similar in spirit to our recently developed methodology for data fusion via collective matrix factorization (Žitnik and Zupan, 2015).
definition: A textual entity that discusses work from other publications and expresses their relevancy to the content of a document.
definition editor: PERSON: Bill Baumgartner
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

requirements section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: requirements textual entity
editor preferred term: requirements section
example of usage: The section labelled 'availability and requirements' in a typical scientific journal article, e.g. Qi et al. BMC Bioinformatics. 2014; 15: 11. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897912/).
definition: A part of a document about a resource described in the document, e.g. software, that describes the requirements necessary to use the resource, e.g. operating systems, hardware, etc. in the case of a software resource.
definition editor: PERSON: Bill Baumgartner
alternative term: requirements
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

requirements textual entity
type: Class
subclass of: textual entity
editor preferred term: requirements textual entity
example of usage: From Qi et al. BMC Bioinformatics. 2014; 15: 11. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897912/): • Operating systems: Platform independent • Programming language: Matlab, R, Python • Other requirements: None • License: GNU GPL v3 • Any restrictions to use by non-academics: None
definition: A textual entity that expresses the requirements necessary to use a resource, e.g. software.
definition editor: PERSON: Bill Baumgartner
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

statistical analysis textual entity
type: Class
subclass of: textual entity
editor preferred term: statistical analysis textual entity
example of usage: From Mondo et al. Cardiovasc J Afr. 2013 Mar; 24(2): 28–33. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3734881/): Data were captured into EPI-DATA (version 3.1), cleaned and then exported to Stata version 10 for analysis. Continuous variables were summarised as mean (± standard deviation) and median (inter-quartile range), and presented in the tables. Categorical data were analysed using frequency and percentages, and results are presented in frequency tables and bar charts. Test of significance (p-value) was determined using the chi-square test. A p-value of less than 0.05 was considered significant.
definition: A textual entity documenting statistical analysis tools and techniques employed.
definition editor: PERSON: Bill Baumgartner
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

statistical analysis section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: statistical analysis textual entity
editor preferred term: statistical analysis section
example of usage: The section labelled 'statistical analysis' in a typical scientific journal article, e.g. Mondo et al. Cardiovasc J Afr. 2013 Mar; 24(2): 28–33. (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3734881/)
definition: A part of the document used to describe the statistical methodologies employed in the work presented in the document.
definition editor: PERSON: Bill Baumgartner
alternative term: statistical analysis
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

tables section
type: Class
subclass of: document part
subclass of: Restriction
  on property: has part
  some values from: table
editor preferred term: tables section
example of usage: The section labelled 'tables' in a typical scientific journal article.
definition: A part of a document that contains one or more tables.
definition editor: PERSON: Bill Baumgartner
alternative term: tables
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/183

postal code
type: Class
subclass of: identifier
definition: An identifier that denotes some postal delivery route, some aggregate of postal delivery routes or a geographical region and was created for the purpose of sorting and delivering mail.
definition editor: Mathias Brochhausen

Postal delivery route
type: Class
subclass of: plan specification
definition: A plan specification that if realized, is realized by the delivery of mail to some facility or mailbox within some geographical region.
definition editor: Mathias Brochhausen

zone improvement plan code
type: Class
subclass of: postal code
definition: A postal code that is used in the United States for the purpose of sorting and delivering mail, and that denotes some postal delivery route or some aggregate of postal delivery routes.
definition editor: Mathias Brochhausen
alternative term: ZIP code

database extract, transform, and load process
type: Class
subclass of: planned process
subclass of: Restriction
  on property: has_specified_input
  some values from: information content entity
subclass of: Restriction
  on property: has_specified_output
  some values from: information content entity
editor preferred term: database extract, transform, and load process
definition: A planned process which takes as input a database and fills another database by extracting concretizations of information entities from the first, transforming them, and loading the transformed concretizations into the second.
editor note: Alan Ruttenberg 12/21/16: Maybe this definition instead: A planned process which takes as input a database and copies concretizations from the first, optionally transforms then copies the result to the second
editor note: Alan Ruttenberg 12/21/16: We don't define database in IAO, currently, as the bare word is ambiguous. Reasonable interpretations of the word might be the material entity, an information structure, an information content entity. However this definition commits, at least, to there being some material thing which bear concretizations of information entities and that there are new concretizations created during the process. We consider the ETL process in terms of information entities rather than the concretizations. No committment is made as to whether the specified output.
definition editor: PERSON:Alan Ruttenberg
alternative term: ETL
definition source: WEB:https://en.wikipedia.org/wiki/Extract,_transform,_load
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/187

descriptive data section
type: Class
subclass of: document part
editor preferred term: descriptive data section
has curation status: metadata complete
definition: A document part that lists and defines data variables, describes data characteristics (e.g. missing data information) and any assumptions and simplifications made.
definition editor: PERSON: Chen Yang
definition editor: PERSON: Jie Zheng
definition source: https://www.equator-network.org/reporting-guidelines/prisma/
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/235
ontology term requester: ONE ontology

additional results section
type: Class
subclass of: results section
editor preferred term: additional results section
has curation status: metadata complete
definition: A results section that reports analyses other than main results of the study (e.g. subgroups analyses, adjusted analyses, sensitivity analyses, etc.)
definition editor: PERSON: Chen Yang
definition editor: PERSON: Jie Zheng
definition source: https://www.equator-network.org/reporting-guidelines/consort/
definition source: https://www.equator-network.org/reporting-guidelines/prisma/
definition source: https://www.equator-network.org/reporting-guidelines/strobe/
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/235
ontology term requester: ONE ontology

research participants section
type: Class
subclass of: document part
editor preferred term: research participants section
has curation status: metadata complete
definition: A document part that describes human subject(s) that participated in a study (e.g. inclusion & exclusion criteria, recruitment methods, reasons for non-participation, grouping and randomisation, methods of follow-up, etc.).
definition editor: PERSON: Chen Yang
definition editor: PERSON: Jie Zheng
definition source: https://www.equator-network.org/reporting-guidelines/consort/
definition source: https://www.equator-network.org/reporting-guidelines/prisma/
definition source: https://www.equator-network.org/reporting-guidelines/strobe-nut/
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/235
ontology term requester: ONE ontology

measurement methods section
type: Class
subclass of: methods section
editor preferred term: measurement methods section
has curation status: metadata complete
definition: A methods section that describes details of data assessment methods (data measurement).
definition editor: PERSON: Chen Yang
definition editor: PERSON: Jie Zheng
definition source: https://www.equator-network.org/reporting-guidelines/strobe/
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/235
ontology term requester: ONE ontology

research settings section
type: Class
subclass of: document part
editor preferred term: research settings section
has curation status: metadata complete
definition: A document part that describes the physical/social/cultural conditions around a research trial.
definition editor: PERSON: Chen Yang
definition editor: PERSON: Jie Zheng
definition source: https://www.ncbi.nlm.nih.gov/books/NBK262175/
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/235
ontology term requester: ONE ontology

study bias section
type: Class
subclass of: study limitations section
editor preferred term: study bias section
has curation status: metadata complete
definition: A study limitations section that describes systematic error introduced into sampling or testing by selecting or encouraging one outcome or answer over others.
definition editor: PERSON: Chen Yang
definition editor: PERSON: Jie Zheng
definition source: DOI: 10.1097/PRS.0b013e3181de24bc
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/235
ontology term requester: ONE ontology

graphical abstract
type: Class
subclass of: abstract
editor preferred term: graphical abstract
has curation status: metadata complete
definition: An abstract that is pictorial summary of the main findings described in the document.
definition editor: PERSON: Jie Zheng
definition editor: PERSON: Tim Beck
alternative term: visual abstract
definition source: https://www.elsevier.com/authors/journal-authors/graphical-abstract
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/234
ontology term requester: Biomedical literature NLP project

ORCID identifier
type: Class
subclass of: centrally registered identifier
has curation status: pending final vetting
definition: A centrally registered identifier that is issued by ORCID (https://orcid.org/) and used to persistantly identify oneself as a human researcher or contributor.
editor note: "You can connect your iD with your professional information — affiliations, grants, publications, peer review, and more. You can use your iD to share your information with other systems, ensuring you get recognition for all your contributions, saving you time and hassle, and reducing the risk of errors." [https://orcid.org/]
editor note: This class was originally defined in Apollo_SV (http://purl.obolibrary.org/obo/APOLLO_SV_00000496) but due to it being more in scope of IAO, it was decided to add it to IAO and deprecate its Apollo_SV equivalent. (2022-10-25)
definition editor: http://orcid.org/0000-0002-1595-3213
alternative term: ORCID ID
alternative term: ORCiD
alternative term: Open Researcher and Contributor ID
alternative term: Open Researcher and Contributor Identifier
definition source: https://orcid.org/
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/259

identifier
type: Class
equivalent class: Class
  intersection of: information content entity
  intersection of: Restriction
    on property: denotes
    some values from: entity
  intersection of: Restriction
    on property: is specified output of
    some values from: identifier creating process
subclass of: information content entity
subclass of: Restriction
  on property: denotes
  some values from: entity
subclass of: Restriction
  on property: is specified output of
  some values from: identifier creating process
editor preferred term: identifier
definition: An information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity.
definition editor: Justin Whorton
definition editor: Mathias Brochhausen
alternative term: proper name
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/237
creator: Mathias Brochhausen
comment: Sep 29, 2016: The current definition has been amended from the previous version: "A proper name is an information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity." to more accuratly reflect the necessary and sufficient condition on the class. (MB)

grapheme
type: Class
subclass of: information content entity
example of usage: alphabetic letters, Chinese characters, numerical digits, punctuation marks, and the individual symbols of any of the world's writing systems
definition: An information content entity that is a fundamental unit in a written language.
definition editor: Justin Whorton
definition source: http://en.wikipedia.org/wiki/Grapheme
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/237
creator: Mathias Brochhausen
comment: Grapheme is not about anything and hence is likely to not be an information content entity. If a new subclass of GDC for information structure entities is created it should move there.

identifier creating process
type: Class
equivalent class: Class
  intersection of: planned process
  intersection of: Restriction
    on property: has_specified_output
    some values from: identifier
subclass of: planned process
subclass of: Restriction
  on property: has_specified_output
  some values from: identifier
definition: A planned process that provides a reference to an individual entity shared by a group of subscribers to refer to that individual entity.
definition editor: Justin Whorton
definition editor: Mathias Brochhausen
alternative term: dubbing process
alternative term: naming
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/237
creator: Mathias Brochhausen

personal name
type: Class
subclass of: identifier
definition: An identifier referring to an individual entity that is ascribed personhood by the user of the identifier.
definition editor: Justin Whorton
definition editor: Mathias Brochhausen
definition source: http://en.wikipedia.org/wiki/Personal_name
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/237
comment: Personal names "today usually comprises a given name bestowed at birth or at a young age plus a surname. It is nearly universal for a human to have a name; except in rare cases, for example feral children growing up in isolation, or infants orphaned by natural disaster for whom no written record survives.[citation needed] The Convention on the Rights of the Child specifies that a child has the right from birth to a name. Certain isolated tribes, such as the Machiguenga of the Amazon, also lack personal names." (http://en.wikipedia.org/wiki/Personal_name)
comment: Personal names to not include names of fictional characters, e.g. Sherlock Holmes.
comment: Sep 29, 2016: The comment that including the wikipedia definition of personal name is not to be interpreted in a way that restricts this class to only contain strings of letters. A numerical or alphanumerical identifier that denotes a human is being is a personal name, too. (MB)

given name
type: Class
subclass of: personal name
definition: A personal name that specifies and differentiates between members of a group of individuals, especially in a family, all of whose members usually share the same family name (surname). A given name is purposefully given, usually by a child's parents at or near birth, in contrast to an inherited one such as a family name
definition editor: Justin Whorton
definition editor: Mathias Brochhausen
alternative term: first name
definition source: http://en.wikipedia.org/wiki/Given_name
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/237

family name
type: Class
subclass of: identifier
definition: An identifier that is typically a part of a person's name which has been passed, according to law or custom, from one or both parents to their children.
definition editor: Justin Whorton
definition editor: Mathias Brochhausen
alternative term: last name
alternative term: surname
definition source: http://en.wikipedia.org/wiki/Family_name
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/237

code set
type: Class
subclass of: information content entity
subclass of: Restriction
  on property: has part
  some values from: identifier
definition: An information content entity that is a collection of other information content entities that has been created to identify or annotate things in a specified domain, and where the intention of its creators is that the collection has a one-to-one correspondence with those things.
definition editor: Alan Ruttenberg
definition editor: Justin Whorton
definition editor: Mathias Brochhausen
alternative term: code map
alternative term: code system
alternative term: codeset
alternative term: coding system
alternative term: controlled vocabulary
term tracker item: https://github.com/information-artifact-ontology/IAO/issues/237
contributor: Alan Ruttenberg
contributor: Clint Dowland
contributor: Matt Diller
contributor: Sarah Bost
contributor: William R. Hogan
comment: Code sets might include non-entities/things (e.g. missing thumbs).
comment: Does not imply absence vs. presence of any taxonomy.
comment: Does not imply that aggregated entities denote particulars, universals, or defined classes (a.k.a. attributive collections) or even that they denote only one of these three types of entities.
comment: Each aggregated entity is often (but not necessarily) associated with a text string—variously called a “description,” “name,” “title,” or “label”—that helps humans reach the target of denotation. When there is no such string, it is almost always because the entities take the form of human language words. For example, a “sex” or “gender” code set could contain “MALE” and “FEMALE,” or even “M” and “F” (by convention, we understand what these mean).
comment: For National Drug Codes (NDCs) and similar code sets, there doesn’t even have to be a single, fully-concretized copy somewhere (for example, for NDCs there is no centralized database or repository where they all live as one instance of concretization of code set). The code set can be “distributively” concretized. This seems like an unusual exception, but it also likely applies to Universal Product Codes (UPCs) and their follow on Global Trade Item Numbers (GTINs).
comment: For each given domain, there can potentially exist multiple code sets. The multiplicity of code sets is partially due to the different specific purposes of those code sets.
comment: Many code sets are created for a specific purpose in addition to merely identifying or annotating core ideas of a specified domain.
comment: The information content entities do not denote each other.

identity document
type: Class
subclass of: document
definition: A document that denotes some identity and is concretized by the bearer of some credential role.
definition editor: Amanda Hicks

documented identity
type: Class
subclass of: information content entity
definition: A documented identity is the aggregate of all data items about an entity. Notice that a documented identity is not itself a document since a document is intended to be understood as a whole and data items about an individual are usually scattered across different documents.
definition editor: Amanda Hicks
comment: is an aggregate of ICEs also an ICE? yes Is part_of the appropriate relation to use for data items and documented identities?

authentication
type: Class
subclass of: process
example of usage: I order a beer and the bartender authenticates my age by looking at my DOB on my driver's license. I sign into my email account, and the system authenticates my permission to read the email by checking the password I enter against my password listed in the database.
definition: Authentication is the act of checking or verifying an identity claim (that is either tacit or explicit).
definition editor: Amanda Hicks

credential role
type: Class
subclass of: role
definition: A role that inheres in a concretization of an identity document and is realized by an authentication process.
definition editor: Amanda Hicks

deontic document act
type: Class
subclass of: deontic declaration
example of usage: my filling in an immigration form, a judge's signing and stamping a court order
definition: A deontic declaration creating or revoking a deontic role by lawfully manipulating (signing, stamping, publishing) a document.
definition editor: Mathias Brochhausen

social act
type: Class
subclass of: planned process
example of usage: Colonel Klink giving Sergeant Schultz an order, Jake promising Jill to take her to the junior prom
definition: A planned process that is carried out by a conscious being or an organization, and is self-generated, directed towards another conscious being or an aggregate of conscious beings, an organization or an aggregate of organizations, and that is in need of being perceived.
definition editor: Mathias Brochhausen
comment: The phrase "in need of being perceived" does not imply that only planned processes that are in fact perceived can be social acts. Reinach clarifies that by exemplifying these matters for commands: "The command is according to its essence in need of being heard (vernehmungsbedürtig". It can of course happen that commands are given without being heard. Then they fail to fulfil their purpose. They are like thrown spears which fall to the ground without hitting their target." (A. Reinach: The Apriori Foundations of the Civil Law." Edited by J. Crosby, Heusenstamm: ontos Verlag, 2012). Reinach clearly does not imply that a command that does not fulfill its prupose would not be a command. Thanks to W.R. Hogan for finding the Reinach quote.

deontic declaration
type: Class
subclass of: social act
definition: A social act that creates or revokes a deontic role.
definition editor: Mathias Brochhausen

document act performer role
type: Class
subclass of: role
example of usage: a judge's role of signing a court order
definition: A role inhering in a human being or an organization or an aggregate of any of the aforementioned that is realized by the bearer being the agent in a document act.
definition editor: Mathias Brochhausen

ontology module
type: Class
subclass of: data about an ontology part
editor preferred term: ontology module
editor note: I have placed this under 'data about an ontology part', but this can be discussed. I think this is OK if 'part' is interpreted reflexively, as an ontology module is the whole ontology rather than part of it.
alternative term: ontology file
curator note: This class and it's subclasses are applied to OWL ontologies. Using an rdf:type triple will result in problems with OWL-DL. I propose that dcterms:type is instead used to connect an ontology URI with a class from this hierarchy. The class hierarchy is not disjoint, so multiple assertions can be made about a single ontology.

base ontology module
type: Class
subclass of: ontology module
editor preferred term: base ontology module
definition: An ontology module that comprises only of asserted axioms local to the ontology, excludes import directives, and excludes axioms or declarations from external ontologies.

editors ontology module
type: Class
subclass of: ontology module
editor preferred term: editors ontology module
definition: An ontology module that is intended to be directly edited, typically managed in source control, and typically not intended for direct consumption by end-users.
alternative term: source ontology module

main release ontology module
type: Class
subclass of: ontology module
editor preferred term: main release ontology module
definition: An ontology module that is intended to be the primary release product and the one consumed by the majority of tools.
editor note: TODO: Add logical axioms that state that a main release ontology module is derived from (directly or indirectly) an editors module

bridge ontology module
type: Class
subclass of: ontology module
editor preferred term: bridge ontology module
definition: An ontology module that consists entirely of axioms that connect or bridge two distinct ontology modules. For example, the Uberon-to-ZFA bridge module.

import ontology module
type: Class
subclass of: subset ontology module
editor preferred term: import ontology module
definition: A subset ontology module that is intended to be imported from another ontology.
editor note: TODO: add axioms that indicate this is the output of a module extraction process.
alternative term: import file

subset ontology module
type: Class
subclass of: ontology module
editor preferred term: subset ontology module
definition: An ontology module that is extracted from a main ontology module and includes only a subset of entities or axioms.
alternative term: ontology slim
alternative term: subset ontology

curation subset ontology module
type: Class
subclass of: subset ontology module
editor preferred term: curation subset ontology module
definition: A subset ontology that is intended as a whitelist for curators using the ontology. Such a subset will exclude classes that curators should not use for curation.

analysis subset ontology module
type: Class
subclass of: subset ontology module
editor preferred term: analysis ontology module
definition: An ontology module that is intended for usage in analysis or discovery applications.

single layer subset ontology module
type: Class
subclass of: subset ontology module
editor preferred term: single layer ontology module
definition: A subset ontology that is largely comprised of a single layer or strata in an ontology class hierarchy. The purpose is typically for rolling up for visualization. The classes in the layer need not be disjoint.
alternative term: ribbon subset

exclusion subset ontology module
type: Class
subclass of: subset ontology module
editor preferred term: exclusion subset ontology module
definition: A subset of an ontology that is intended to be excluded for some purpose. For example, a blacklist of classes.
alternative term: antislim

external import ontology module
type: Class
subclass of: import ontology module
editor preferred term: external import ontology module
definition: An imported ontology module that is derived from an external ontology. Derivation methods include the OWLAPI SLME approach.
alternative term: external import

species subset ontology module
type: Class
subclass of: subset ontology module
editor preferred term: species subset ontology module
definition: A subset ontology that is crafted to either include or exclude a taxonomic grouping of species.
alternative term: taxon subset

reasoned ontology module
type: Class
subclass of: ontology module
editor preferred term: reasoned ontology module
definition: An ontology module that contains axioms generated by a reasoner. The generated axioms are typically direct SubClassOf axioms, but other possibilities are available.

generated ontology module
type: Class
subclass of: ontology module
editor preferred term: generated ontology module
definition: An ontology module that is automatically generated, for example via a SPARQL query or via template and a CSV.
editor note: TODO: Add axioms (using PROV-O?) that indicate this is the output-of some reasoning process

template generated ontology module
type: Class
subclass of: generated ontology module
editor preferred term: template generated ontology module
definition: An ontology module that is automatically generated from a template specification and fillers for slots in that template.

taxonomic bridge ontology module
type: Class
subclass of: bridge ontology module
editor preferred term: taxonomic bridge ontology module

ontology module subsetted by expressivity
type: Class
subclass of: subset ontology module
editor preferred term: ontology module subsetted by expressivity

obo basic subset ontology module
type: Class
subclass of: ontology module subsetted by expressivity
editor preferred term: obo basic subset ontology module
definition: A subset ontology that is designed for basic applications to continue to make certain simplifying assumptions; many of these simplifying assumptions were based on the initial version of the Gene Ontology, and have become enshrined in many popular and useful tools such as term enrichment tools. Examples of such assumptions include: traversing the ontology graph ignoring relationship types using a naive algorithm will not lead to cycles (i.e. the ontology is a DAG); every referenced term is declared in the ontology (i.e. there are no dangling clauses). An ontology is OBO Basic if and only if it has the following characteristics: DAG Unidirectional No Dangling Clauses Fully Asserted Fully Labeled No equivalence axioms Singly labeled edges No qualifier lists No disjointness axioms No owl-axioms header No imports

ontology module subsetted by OWL profile
type: Class
subclass of: ontology module subsetted by expressivity
editor preferred term: ontology module subsetted by OWL profile

EL++ ontology module
type: Class
subclass of: ontology module subsetted by OWL profile
editor preferred term: EL++ ontology module

informed consent form
type: Class
subclass of: document
subclass of: Restriction
  on property: is associated with review board approval number
  some values from: review board approval number
definition: A document that explains all relevant study information to assist a human subject in understanding the expectations and requirements of participation in a research study. This form document is presented to and signed by the study subject.
editor note: The term definition is adapted from NCIt definition of 'consent form' (C16468) with modification. Compared to the NCIt definition, the ICO definition does not restrict the form to a clinical trial.
definition editor: AK, FM, YH, YL, MH, EE
definition source: NCIt C16468
imported from: ico.owl
term_mapping_to_UMLS: C0009797
term_mapping_to_NCIT: C16468

informed consent form design
type: Class
subclass of: planned process
subclass of: Restriction
  on property: has_specified_output
  some values from: informed consent form
definition: a planned process that involves the design of an informed consent form.
definition editor: AK, FM, YH
imported from: ico.owl

informed consent regulatory body
type: Class
subclass of: organization
definition: an organization that approves the clinical study protocol, and ensures the applicable governing rules and laws are upheld.
definition editor: AK, FM, YH
imported from: ico.owl

study requiring informed consent
type: Class
subclass of: investigation
definition: a planned process that is a study requiring an official informed consent process.
definition editor: YH
imported from: ico.owl

consenter role
type: Class
subclass of: role
definition: a role that inheres in a patient or the legal guadian when he/she participates the consenting process.
imported from: ico.owl
creator: YL

review board approval number
type: Class
subclass of: symbol
subclass of: Restriction
  on property: is assigned by organization
  some values from: informed consent regulatory body
definition: A character string that is assigned by the review board upon approval of the study.
editor note: For the review board approval, different countries or continents may have different responsible entities for approving the study. For example, in USA, the board is called "Institutional Review Board" (IRB). In many countries in Europe, it is called Ethics committee.
editor note: This term definition is adapted from the definition of the NCIt term 'Review Board Approval Number Text'.
definition editor: YL, EE, YH, AK, MH
imported from: ico.owl
term_mapping_to_UMLS: C2985863
term_mapping_to_NCIT: C93662

vaccination informed consent form
type: Class
subclass of: informed consent form
definition: an informed consent form that is used for vaccination
definition editor: YH, YL
alternative term: immunization consent form
imported from: ico.owl

question textual entity
type: Class
subclass of: textual entity
subclass of: Restriction
  on property: is about
  some values from: study requiring informed consent
definition: a textual entity that provides a question in text.
definition editor: YL, YH
imported from: ico.owl

filled questionnaire
type: Class
equivalent class: Class
  intersection of: questionnaire
  intersection of: Restriction
    on property: is specified output of
    some values from: filling questionnaire
subclass of: questionnaire
definition: A questionaire that is filled up with answers.
definition editor: YH, YL
imported from: ico.owl

answer option text entity
type: Class
subclass of: textual entity
subclass of: Restriction
  on property: is about
  some values from: study requiring informed consent
definition: a textual entity that answers a question with an option.
definition editor: YL, YH, JZ
imported from: ico.owl

yes answer text entity
type: Class
subclass of: answer option text entity
subclass of: Restriction
  on property: is about
  some values from: study requiring informed consent
definition: an answer option textual entity that answers a question with a yes.
definition editor: YL, YH, JZ
imported from: ico.owl

no answer text entity
type: Class
subclass of: answer option text entity
subclass of: Restriction
  on property: is about
  some values from: study requiring informed consent
definition: an answer option textual entity that answers a question with a no.
definition editor: YL, YH, JZ
imported from: ico.owl

filling informed consent form
type: Class
subclass of: planned process
definition: a planned process that involves the filling of an informed consent form.
definition editor: YH, YL
imported from: ico.owl

filling questionnaire
type: Class
subclass of: planned process
definition: a planned process that involves the filling of a questionnaire form that includes a list of questions.
definition editor: YH, YL
imported from: ico.owl

representation
type: Class
subclass of: specifically dependent continuant
definition: A dependent continuant which is about a portion of reality.
definition source: http://www.jbiomedsem.com/content/1/1/10

cognitive representation
type: Class
subclass of: representation
definition: A representation which specifically depends on an anatomical structure in the cognitive system of an organism.
definition source: http://www.jbiomedsem.com/content/1/1/10

Viruses
type: Class
subclass of: organism
editor preferred term: Viruses
imported from: ico.owl
imported from: ncbitaxon.owl
imported from: obi.owl
imported from: vo.owl
has_rank: NCBITaxon superkingdom
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Vira
has_related_synonym: Viridae
has_related_synonym: viruses

Variola virus
type: Class
subclass of: dsDNA viruses, no RNA stage
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:12871
database_cross_reference: GC_ID:1
has_exact_synonym: small pox virus
has_exact_synonym: smallpox
has_exact_synonym: smallpox virus
has_obo_namespace: ncbi_taxonomy
has_related_synonym: variola virus VAR

H5N1 subtype
type: Class
subclass of: Influenza A virus
imported from: ncbitaxon.owl
imported from: vo.owl
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy
has_related_synonym: H5N1

Human herpesvirus 3
type: Class
subclass of: dsDNA viruses, no RNA stage
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
has_broad_synonym: HHV-3
has_broad_synonym: VZV
database_cross_reference: GC_ID:1
has_exact_synonym: Varicella-zoster virus
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Human alphaherpesvirus 3
has_related_synonym: Varicella Zoster Virus
has_related_synonym: varicella zoster virus VZV
has_related_synonym: varicella-zoster virus VZV

Hepatitis B virus
type: Class
subclass of: Viruses
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
has_broad_synonym: HBV
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Human hepatitis B virus
has_related_synonym: hepatitis B virus (HBV)
has_related_synonym: hepatitis B virus HBV
has_related_synonym: hepatitis B virus, HBV
has_related_synonym: human hepatitis B virus HBV

Human papillomavirus
type: Class
subclass of: dsDNA viruses, no RNA stage
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Human Papilloma Virus
has_related_synonym: human papillomavirus HPV

Rotavirus
type: Class
subclass of: Viruses
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon genus
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Rotaviruses

Rubella virus
type: Class
subclass of: ssRNA positive-strand viruses, no DNA stage
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy

Flavivirus
type: Class
subclass of: ssRNA positive-strand viruses, no DNA stage
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon genus
database_cross_reference: GC_ID:1
has_exact_synonym: arboviruses group B
has_obo_namespace: ncbi_taxonomy

Japanese encephalitis virus
type: Class
subclass of: Flavivirus
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Japanese encephalitis
has_related_synonym: Japanese encephalitis (JE) virus
has_related_synonym: Japanese encephalitis virus JE
has_related_synonym: Japanese encephalitis virus JEV

Tick-borne encephalitis virus
type: Class
subclass of: Flavivirus
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
has_broad_synonym: TBEV
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy
has_related_synonym: FSME virus
has_related_synonym: tick-borne encephalitis virus TBE virus
has_related_synonym: tick-borne encephalitis virus TBEV

Yellow fever virus
type: Class
subclass of: Flavivirus
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
has_broad_synonym: YFV
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Flavivirus febricis
has_related_synonym: yellow fever virus YFV

Mononegavirales
type: Class
subclass of: ssRNA negative-strand viruses
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon order
database_cross_reference: GC_ID:1
has_exact_synonym: negative-sense genome single-stranded RNA viruses
has_obo_namespace: ncbi_taxonomy

Paramyxovirinae
type: Class
subclass of: Mononegavirales
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon subfamily
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy

Mumps virus
type: Class
subclass of: Paramyxovirinae
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy

Measles virus
type: Class
subclass of: Paramyxovirinae
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:11230
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Cell-associated subacute sclerosing panencephalitis
has_related_synonym: Subacute sclerosing panencephalitis virus
has_related_synonym: measles virus MV
has_related_synonym: rougeole virus
has_related_synonym: rubeola virus
has_related_synonym: subacute sclerose panencephalitis virus
has_related_synonym: subacute sclerosing panencephalitis virus, SSPEV

Rabies virus
type: Class
subclass of: Mononegavirales
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy

Orthomyxoviridae
type: Class
subclass of: ssRNA negative-strand viruses
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon family
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy

Influenza A virus
type: Class
subclass of: Orthomyxoviridae
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
has_broad_synonym: FLUAV
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Influenza virus type A
has_related_synonym: influenza A virus INF A

H1N1 subtype
type: Class
subclass of: Influenza A virus
imported from: ncbitaxon.owl
imported from: vo.owl
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy
has_related_synonym: H1N1

Euteleostomi
type: Class
subclass of: Vertebrata <Metazoa>
editor preferred term: Euteleostomi
alternative term: bony vertebrates
imported from: ico.owl
imported from: ncbitaxon.owl
imported from: obi.owl

Hepatitis A virus
type: Class
subclass of: ssRNA positive-strand viruses, no DNA stage
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy

Proteobacteria
type: Class
subclass of: Bacteria
subclass of: Restriction
  on property: has part
  some values from: genome of Proteobacteria
imported from: ncbitaxon.owl
imported from: ogg.owl
imported from: vo.owl
has_rank: NCBITaxon phylum
database_cross_reference: GC_ID:11
database_cross_reference: PMID:11321122
database_cross_reference: PMID:11542017
database_cross_reference: PMID:11837318
database_cross_reference: PMID:16280474
has_exact_synonym: purple bacteria
has_exact_synonym: purple bacteria and relatives
has_exact_synonym: purple non-sulfur bacteria
has_exact_synonym: purple photosynthetic bacteria
has_exact_synonym: purple photosynthetic bacteria and relatives
has_obo_namespace: ncbi_taxonomy
has_related_synonym: proteobacteria

Gammaproteobacteria
type: Class
subclass of: Proteobacteria
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon class
database_cross_reference: GC_ID:11
database_cross_reference: PMID:16280474
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Gammaproteobacteria Garrity et al. 2005
has_related_synonym: Proteobacteria gamma subdivision
has_related_synonym: Purple bacteria, gamma subdivision
has_related_synonym: g-proteobacteria
has_related_synonym: gamma proteobacteria
has_related_synonym: gamma subdivision
has_related_synonym: gamma subgroup

Firmicutes
type: Class
subclass of: Bacteria
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon phylum
has_alternative_id: NCBITaxon:31968
database_cross_reference: GC_ID:11
database_cross_reference: PMID:10555317
database_cross_reference: PMID:11034484
database_cross_reference: PMID:11542017
database_cross_reference: PMID:15143038
has_exact_synonym: Gram-positive bacteria
has_exact_synonym: low G+C Gram-positive bacteria
has_exact_synonym: low GC Gram+
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Bacillus/Clostridium group
has_related_synonym: Clostridium group firmicutes
has_related_synonym: Firmacutes
has_related_synonym: Gram positive bacteria
has_related_synonym: Low G+C firmicutes
has_related_synonym: clostridial firmicutes
has_related_synonym: firmicutes

Streptococcus pneumoniae
type: Class
subclass of: Bacilli
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
database_cross_reference: GC_ID:11
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Diplococcus pneumoniae
has_related_synonym: Micrococcus pneumoniae

cellular organisms
type: Class
subclass of: organism
database_cross_reference: GC_ID:1

Bacillus anthracis
type: Class
subclass of: Bacilli
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
database_cross_reference: GC_ID:11
database_cross_reference: PMID:8123566
has_exact_synonym: anthrax
has_exact_synonym: anthrax bacterium
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Bacillus cereus var. anthracis
has_related_synonym: Bacteridium anthracis

Clostridium tetani
type: Class
subclass of: Firmicutes
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
database_cross_reference: GC_ID:11
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Bacillus tetani

Corynebacterium diphtheriae
type: Class
subclass of: Corynebacterineae
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
database_cross_reference: GC_ID:11
database_cross_reference: PMID:7729671
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Bacillus diphtheriae
has_related_synonym: Bacterium diphtheriae
has_related_synonym: Microsporon diphthericum
has_related_synonym: Microsporon diphtheriticum
has_related_synonym: Mycobacterium diphtheriae
has_related_synonym: Pacinia loeffleri

Mycobacterium tuberculosis
type: Class
subclass of: Corynebacterineae
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
database_cross_reference: GC_ID:11
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Bacillus tuberculosis
has_related_synonym: Bacterium tuberculosis
has_related_synonym: Mycobacterium tuberculosis typus humanus
has_related_synonym: Mycobacterium tuberculosis var. hominis

Influenzavirus B
type: Class
subclass of: Orthomyxoviridae
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon genus
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy

Bacteria
type: Class
subclass of: organism
subclass of: Restriction
  on property: has part
  some values from: genome of Bacteria
editor preferred term: Bacteria
alternative term: eubacteria
imported from: ico.owl
imported from: ncbitaxon.owl
imported from: obi.owl
imported from: ogg.owl
imported from: vo.owl
has_rank: NCBITaxon superkingdom
database_cross_reference: GC_ID:11
database_cross_reference: PMID:10425795
database_cross_reference: PMID:10425796
database_cross_reference: PMID:10425797
database_cross_reference: PMID:10490293
database_cross_reference: PMID:10843050
database_cross_reference: PMID:10939651
database_cross_reference: PMID:10939673
database_cross_reference: PMID:10939677
database_cross_reference: PMID:11211268
database_cross_reference: PMID:11321083
database_cross_reference: PMID:11321113
database_cross_reference: PMID:11411719
database_cross_reference: PMID:11540071
database_cross_reference: PMID:11542017
database_cross_reference: PMID:11542087
database_cross_reference: PMID:11760965
database_cross_reference: PMID:12054223
database_cross_reference: PMID:2112744
database_cross_reference: PMID:270744
database_cross_reference: PMID:8123559
database_cross_reference: PMID:8590690
database_cross_reference: PMID:9103655
database_cross_reference: PMID:9336922
has_exact_synonym: eubacteria
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Monera
has_related_synonym: Procaryotae
has_related_synonym: Prokaryota
has_related_synonym: Prokaryotae
has_related_synonym: bacteria
has_related_synonym: not Bacteria Haeckel 1894
has_related_synonym: prokaryote
has_related_synonym: prokaryotes

Archaea
type: Class
subclass of: organism
editor preferred term: Archaea
imported from: ico.owl
imported from: ncbitaxon.owl
imported from: obi.owl

Eukaryota
type: Class
subclass of: cellular organisms
subclass of: organism
editor preferred term: Eukaryota
alternative term: eucaryotes
alternative term: eukaryotes
imported from: ico.owl
imported from: ncbitaxon.owl
imported from: obi.owl
database_cross_reference: GC_ID:1
database_cross_reference: PMID:23020233
database_cross_reference: PMID:30257078

Betaproteobacteria
type: Class
subclass of: Proteobacteria
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon class
database_cross_reference: GC_ID:11
has_obo_namespace: ncbi_taxonomy
has_related_synonym: 'Betaproteobacteria'
has_related_synonym: Proteobacteria beta subdivision
has_related_synonym: Purple bacteria, beta subdivision
has_related_synonym: b-proteobacteria
has_related_synonym: beta proteobacteria
has_related_synonym: beta subdivision
has_related_synonym: beta subgroup

Euarchontoglires
type: Class
subclass of: Mammalia
editor preferred term: Euarchontoglires
imported from: ico.owl
imported from: ncbitaxon.owl
imported from: obi.owl

Tetrapoda
type: Class
subclass of: Euteleostomi
editor preferred term: Tetrapoda
alternative term: tetrapods
imported from: ico.owl
imported from: ncbitaxon.owl
imported from: obi.owl

Amniota
type: Class
subclass of: Tetrapoda
editor preferred term: Amniota
alternative term: amniotes
imported from: ico.owl
imported from: ncbitaxon.owl
imported from: obi.owl

Opisthokonta
type: Class
subclass of: Eukaryota
editor preferred term: Opisthokonta
imported from: ico.owl
imported from: ncbitaxon.owl
imported from: obi.owl

Bilateria
type: Class
subclass of: Opisthokonta
subclass of: organism
editor preferred term: Bilateria
imported from: ico.owl
imported from: ncbitaxon.owl
imported from: obi.owl
imported from: vo.owl
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy

dsDNA viruses, no RNA stage
type: Class
subclass of: Viruses
imported from: ncbitaxon.owl
imported from: vo.owl
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy

ssRNA positive-strand viruses, no DNA stage
type: Class
subclass of: ssRNA viruses
imported from: ncbitaxon.owl
imported from: vo.owl
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy

ssRNA negative-strand viruses
type: Class
subclass of: ssRNA viruses
imported from: ncbitaxon.owl
imported from: vo.owl
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy

Mammalia
type: Class
subclass of: Eukaryota
subclass of: Amniota
editor preferred term: Mammalia
alternative term: mammals
imported from: ico.owl
imported from: ncbitaxon.owl
imported from: obi.owl
database_cross_reference: GC_ID:1

ssRNA viruses
type: Class
subclass of: Viruses
imported from: ncbitaxon.owl
imported from: vo.owl
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy

Neisseria meningitidis
type: Class
subclass of: Betaproteobacteria
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
database_cross_reference: GC_ID:11
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Diplokokkus intracellularis meningitidis
has_related_synonym: Micrococcus intracellularis
has_related_synonym: Micrococcus meningitidis
has_related_synonym: Micrococcus meningitidis cerebrospinalis
has_related_synonym: Neisseria meningitidis.
has_related_synonym: Neisseria weichselbaumii

Bordetella pertussis
type: Class
subclass of: Betaproteobacteria
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
database_cross_reference: GC_ID:11
database_cross_reference: PMID:8240949
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Bacterium tussis-convulsivae
has_related_synonym: Haemophilus pertussis
has_related_synonym: Hemophilus pertussis
has_related_synonym: Microbe de la coqueluche

Enterobacteriaceae
type: Class
subclass of: Gammaproteobacteria
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon family
database_cross_reference: GC_ID:11
database_cross_reference: PMID:10555323
database_cross_reference: PMID:10555334
database_cross_reference: PMID:16166704
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Enterobacteraceae
has_related_synonym: Enterobacteraceae (ex Lapage 1979) Lapage 1982, fam. nov., nom. rev.
has_related_synonym: Enterobacteriaceae (ex Rahn 1937) Ewing et al. 1980, fam. nov., nom. rev.
has_related_synonym: Enterobacteriaceae Rahn 1937
has_related_synonym: gamma-3 proteobacteria

Dintheria
type: Class
subclass of: Bilateria
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon genus
database_cross_reference: GC_ID:1
has_obo_namespace: ncbi_taxonomy

Escherichia coli
type: Class
subclass of: Enterobacteriaceae
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
has_alternative_id: NCBITaxon:662101
has_alternative_id: NCBITaxon:662104
database_cross_reference: GC_ID:11
database_cross_reference: PMID:10319482
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Bacillus coli
has_related_synonym: Bacterium coli
has_related_synonym: Bacterium coli commune
has_related_synonym: Enterococcus coli
has_related_synonym: Escherchia coli
has_related_synonym: Eschericia coli
has_related_synonym: bacterium E3

Yersinia pestis
type: Class
subclass of: Enterobacteriaceae
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
database_cross_reference: GC_ID:11
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Bacillus pestis
has_related_synonym: Bacterium pestis
has_related_synonym: Pasteurella pestis
has_related_synonym: Pestisella pestis
has_related_synonym: Yersinia pseudotuberculosis subsp. pestis

Vibrio cholerae
type: Class
subclass of: Gammaproteobacteria
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon species
database_cross_reference: GC_ID:11
database_cross_reference: PMID:9272984
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Bacillo virgola del Koch
has_related_synonym: Bacillus cholerae
has_related_synonym: Bacillus cholerae-asiaticae
has_related_synonym: Kommabacillus
has_related_synonym: Liquidivibrio cholerae
has_related_synonym: Microspira comma
has_related_synonym: Pacinia cholerae-asiaticae
has_related_synonym: Spirillum cholerae
has_related_synonym: Spirillum cholerae-asiaticae
has_related_synonym: Vibrio choleae
has_related_synonym: Vibrio cholera
has_related_synonym: Vibrio cholerae-asiaticae
has_related_synonym: Vibrio comma

Vertebrata <Metazoa>
type: Class
subclass of: Bilateria
editor preferred term: Vertebrata <Metazoa>
alternative term: Vertebrata
alternative term: vertebrates
imported from: ico.owl
imported from: ncbitaxon.owl
imported from: obi.owl

Corynebacterineae
type: Class
subclass of: Bacteria
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon suborder
has_alternative_id: NCBITaxon:1761
database_cross_reference: GC_ID:11
database_cross_reference: PMID:11837321
database_cross_reference: PMID:1736962
database_cross_reference: PMID:19244447
has_obo_namespace: ncbi_taxonomy

Salmonella enterica subsp. enterica serovar Typhi
type: Class
subclass of: Enterobacteriaceae
imported from: ncbitaxon.owl
imported from: vo.owl
has_alternative_id: NCBITaxon:41530
has_alternative_id: NCBITaxon:601
has_alternative_id: NCBITaxon:72667
database_cross_reference: GC_ID:11
database_cross_reference: PMID:10319519
database_cross_reference: PMID:10758910
database_cross_reference: PMID:15653930
database_cross_reference: PMID:16558776
database_cross_reference: PMID:9336938
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Bacillus typhi
has_related_synonym: Bacterium (subgen. Eberthella) typhi
has_related_synonym: Salmonella choleraesuis serovar Typhi
has_related_synonym: Salmonella choleraesuis typhi
has_related_synonym: Salmonella enterica ser. typhi
has_related_synonym: Salmonella enterica serotype Typhi
has_related_synonym: Salmonella enterica serovar Typhi
has_related_synonym: Salmonella typhi

Bacilli
type: Class
subclass of: Firmicutes
imported from: ncbitaxon.owl
imported from: vo.owl
has_rank: NCBITaxon class
database_cross_reference: GC_ID:11
database_cross_reference: PMID:20212322
has_obo_namespace: ncbi_taxonomy
has_related_synonym: Bacillus/Lactobacillus/Streptococcus group
has_related_synonym: Firmibacteria

Primates
type: Class
subclass of: Mammalia
database_cross_reference: GC_ID:1

Homo sapiens
type: Class
subclass of: Euarchontoglires
subclass of: Bilateria
subclass of: Primates
editor preferred term: Homo sapiens
alternative term: human
alternative term: human being
alternative term: man
imported from: ico.owl
imported from: ncbitaxon.owl
imported from: obi.owl
imported from: vo.owl
has_rank: NCBITaxon species
database_cross_reference: GC_ID:1
has_exact_synonym: human
has_exact_synonym: man
has_obo_namespace: ncbi_taxonomy

adverse event
type: Class
subclass of: process
definition: a pathological bodily process that occurs after a medical intervention. An adverse event is likely caused by the medical intervention; however, such a causal association is not required to be an adverse event.
editor note: Melanie Courtot and YH: More work is needed on how to restrict the scope of a term to be an 'adverse event', notably regarding temporal association. When is an appropirate time interval between a medical intervention and an adverse event observed? One week, one month, one year, or a lifetime? For some well-studied medical interventions (e.g., administration of many vaccines or drugs), we probably have a general idea. For many new interventions, we don't know much. In OAE, this issue is associated with defining the 'adverse event incubation time'.
editor note: YH: An adverse event is a process that has specified output of some adverse medical outcome (e.g., symptom, sign or accident) after a medical intervention (or process) (e.g., administration of drug or vaccine). The medical intervention can be an administration of a drug, a vaccine (i.e., vaccination), or a special nutritional product (for example, dietary supplement, infant formula, medical food), surgery, or usage of a medical device.
editor note: YH: An adverse event is possibly induced by the medical intervention. It can be caused by the medical intervention, or may not be caused by the medical intervention. One ultimate goal (or the goal in clinics) of study adverse events is to assess if the adverse event outcome is due to the medical intervention.
editor note: YH: The main scope of OAE includes: (1) represent terms and relations in the area of adverse events, (2) assess possible associations between an adverse event and a medical intervention, particularly, identify any causal effect of a medical intervention to an adverse event; and (2) understand the mechanism (including molecular mechanisms) of causal adverse events.
editor note: YH: There has been discussion regarding whether the term 'side effect' is an alternative term for 'adverse event'. In AERO, the term 'AERO:adverse event' represents a subset of those adverse events for which causality has been established. In OAE, an adverse event for which causality has been established is called 'causal adverse event'.
definition editor: Yongqun He
alternative term: AE
alternative term: adverse reaction
definition source: WEB: http://en.wikipedia.org/wiki/Adverse_event
definition source: WEB: http://www.fda.gov/Safety/MedWatch/HowToReport/ucm053087.htm
definition source: WEB: http://www.ncbi.nlm.nih.gov/pubmed/25093068
imported from: oae.owl
comment: The OAE official website is: http://www.oae-ontology.org/.

medical intervention
type: Class
subclass of: planned process
definition: medical intervention is a planned process that has the goal of diagnosing, preventing or relieving illness or injury.
editor note: The act of intervening, interfering or interceding with the intent of modifying the outcome. In medicine, an intervention is usually undertaken to help treat or cure a condition. For example, "Acupuncture as a therapeutic intervention is widely practiced in the United States," Reference: http://www.medterms.com/script/main/art.asp?articlekey=34214 . Some interventions can be used for diagnosis.
definition editor: YH
definition source: WEB: http://wiki.answers.com/Q/What_is_medical_intervention

vaccine adverse event
type: Class
subclass of: adverse event
subclass of: Restriction
  on property: is reported by
  some values from: Class
    one of: Vaccine Adverse Event Reporting System (VAERS)
subclass of: Restriction
  on property: has vaccine adverse signs
  some values from: symptom
definition: an adverse event that occurs after a vaccination.
definition editor: YH
imported from: oae.owl

surgery
type: Class
subclass of: medical procedure
definition: Surgery is a medical procedure that uses operative manual and instrumental techniques on a patient to investigate and/or treat a pathological condition such as disease or injury, to help improve bodily function or appearance. The key difference between a surgery and a general procedure is the need for an incision. Making an incision, or cutting into the skin to gain access to the body’s deeper tissues or organs, is a defining characteristic of surgery.
definition editor: YH, SS
alternative term: surgical procedure
definition source: WEB: http://en.wikipedia.org/wiki/Surgery
definition source: WEB: http://www.wisegeekhealth.com/what-is-the-difference-between-a-surgery-and-a-procedure.htm
has_MedDRA_id: 10042609

dizziness AE
type: Class
subclass of: adverse event
definition: a sensory capability AE that has an outcome of dizziness
definition editor: YH, SS, MW
imported from: oae.owl
comment: Dizziness describes a number of subjective symptoms, which the patient may describe as feelings of lightheadedness, floating, wooziness, giddiness, confusion, disorientation or loss of balance. Medical terms include vertigo, disequilibrium, pre-syncope or syncoptic episode. Causes may stem from a variety of failures of equilibrioception, hypotension, cerebral hypoxia or a reaction to environmental chemicals or drugs.
see also: HPO: HP_0002321
see also: MedDRA ID: 10013573
see also: SIDER: C0012833

syncope AE
type: Class
subclass of: adverse event
definition: a sensory capability AE that has an outcome of loss of consciousness, fainting
definition editor: YH, SS, MW
alternative term: Syncope is the medical term for fainting, a sudden, usually temporary, loss of consciousness.
alternative term: fainting
definition source: WEB: http://en.wikipedia.org/wiki/Syncope_%28medicine%29
definition source: WEB: http://en.wikipedia.org/wiki/Unconsciousness
imported from: oae.owl
see also: HPO: HP_0001279
see also: MedDRA: 10024855
see also: SIDER: C0039070

Guillain-Barre syndrome AE
type: Class
subclass of: adverse event
definition: a nervous system AE that has the symptom of GBS. Guillain-Barre syndrome (GBS) is a disorder in which the body's immune system attacks part of the peripheral nervous system. The first symptoms of this disorder include varying degrees of weakness or tingling sensations in the legs. In many instances, the weakness and abnormal sensations spread to the arms and upper body. These symptoms can increase in intensity until the muscles cannot be used at all and the patient is almost totally paralyzed. In these cases, the disorder is life-threatening and is considered a medical emergency. Usually Guillain-Barre occurs a few days or weeks after the patient has had symptoms of a respiratory or gastrointestinal viral infection. Occasionally, surgery or vaccinations will trigger the syndrome. Reference: http://www.ninds.nih.gov/disorders/gbs/gbs.htm.
definition editor: YH, SS
alternative term: GBS AE
definition source: WEB: http://www.ncbi.nlm.nih.gov/pubmed/23299621
imported from: oae.owl
see also: HPO: HP_0007131
see also: MedDRA ID: 10018767
see also: MedDRA: 10018767
see also: SIDER: C0018378

serious adverse event
type: Class
subclass of: adverse event
definition: serious adverse event is an adverse event that requires in-patient hospitalization, or prolongation of existing hospitalization, or that causes congenital malformation, or that results in persistent or significant disability or incapacity, or that is life threatening or results in death.
definition editor: YH, MC
alternative term: serious adverse event
alternative term: severe adverse event
definition source: WEB: http://en.wikipedia.org/wiki/Serious_adverse_event
definition source: WEB: http://www.fda.gov/Safety/MedWatch/HowToReport/ucm053087.htm
definition source: WEB: http://www.google.ca/url?sa=t&source=web&ct=res&cd=1&ved=0CA4QFjAA&url=http%3A%2F%2Fwww.irrd.ca%2Fethics%2Fimages%2FAdverse-event-definition.doc&ei=eqFMS-yFNZSoswOt6siKAQ&usg=AFQjCNGnQcwI8OXH7dqxwo4RgZEEn8X6lg&sig2=UNngkCdO5ZTFvbIB1pKuaA
imported from: oae.owl

medical procedure
type: Class
subclass of: medical intervention
definition: a medical intervention that refers to any series of pre-defined steps that should be followed to achieve a desired result.
definition editor: YH, SS
definition source: WEB: http://www.wisegeekhealth.com/what-is-the-difference-between-a-surgery-and-a-procedure.htm

survey data
type: Class
subclass of: data item
definition: A data item that contains the outcome of a survey.
definition editor: Alice Nzinga
definition editor: Mathias Brochhausen

survey plan specification
type: Class
subclass of: plan specification
definition: A plan specification that is realized by process of gathering information (e.g. by asking questions).
definition editor: Alice Nzinga
definition editor: Mathias Brochhausen

survey execution
type: Class
subclass of: planned process
definition: A planned process that realizes the concretization of a survey to generate an output(survey data.)

planned process
type: Class
equivalent class: Restriction
  on property: realizes
  some values from: Restriction
    on property: concretizes
    some values from: plan specification
subclass of: process
editor preferred term: planned process
example of usage: Injecting mice with a vaccine in order to test its efficacy
has curation status: ready for release
definition: A process that realizes a plan which is the concretization of a plan specification.
definition: A processual entity that realizes a plan which is the concretization of a plan specification.
editor note: 'Plan' includes a future direction sense. That can be problematic if plans are changed during their execution. There are however implicit contingencies for protocols that an agent has in his mind that can be considered part of the plan, even if the agent didn't have them in mind before. Therefore, a planned process can diverge from what the agent would have said the plan was before executing it, by adjusting to problems encountered during execution (e.g. choosing another reagent with equivalent properties, if the originally planned one has run out.)
editor note: We are only considering successfully completed planned processes. A plan may be modified, and details added during execution. For a given planned process, the associated realized plan specification is the one encompassing all changes made during execution. This means that all processes in which an agent acts towards achieving some objectives is a planned process.
definition editor: Bjoern Peters
definition source: branch derived
curator note: 6/11/9: Edited at workshop. Used to include: is initiated by an agent
curator note: This class merges the previously separated objective driven process and planned process, as they the separation proved hard to maintain. (1/22/09, branch call)
imported from: ico.owl
imported from: obi.owl
imported from: vo.owl

processed material
type: Class
subclass of: material entity
editor preferred term: processed material
example of usage: Examples include gel matrices, filter paper, parafilm and buffer solutions, mass spectrometer, tissue samples
has curation status: ready for release
definition: Is a material entity that is created or changed during material processing.
definition editor: PERSON: Alan Ruttenberg
imported from: obi.owl
imported from: vo.owl

investigation
type: Class
subclass of: planned process
subclass of: Restriction
  on property: has part
  some values from: documenting
subclass of: Restriction
  on property: has part
  some values from: drawing a conclusion based on data
subclass of: Restriction
  on property: has part
  some values from: study design execution
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: planning
    intersection of: Restriction
      on property: has_specified_output
      some values from: study design
editor preferred term: investigation
example of usage: Lung cancer investigation using expression profiling, a stem cell transplant investigation, biobanking is not an investigation, though it may be part of an investigation
has curation status: ready for release
definition: a planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s).
definition editor: Bjoern Peters
definition source: OBI branch derived
curator note: Could add specific objective specification
imported from: ico.owl
imported from: obi.owl
ISA alternative term: study

investigation agent role
type: Class
equivalent class: Class
  intersection of: role
  intersection of: Restriction
    on property: characteristic of
    some values from: Restriction
      on property: bearer of
      some values from: Restriction
        on property: concretizes
        some values from: Restriction
subclass of: role
subclass of: Restriction
  on property: realized in
  all values from: investigation
editor preferred term: investigation agent role
example of usage: The person perform microarray experiments and submit microarray results (including raw data, processed data) with experiment description to ArrayExpress.
has curation status: ready for release
definition: A role borne by an entity and that is realized in a process that is part of an investigation in which an objective is achieved. These processes include, among others: planning, overseeing, funding, reviewing.
editor note: Implementing a study means carrying out or performing the study and providing reagents or other materials used in the study and other tasks without which the study would not happen.
editor note: Philly2013: Historically, this role would have been borne only by humans or organizations. However, we now also want to enable representing investigations run by robot scientists such as ADAM (King et al, Science, 2009)
definition editor: GROUP: Role Branch
alternative term: investigator
definition source: OBI
curator note: Feb 10, 2009. changes after discussion at OBI Consortium Workshop Feb 2-6, 2009. accepted as core term.
imported from: ico.owl
imported from: obi.owl
ISA alternative term: study person role
comment: Philly2013: Historically, this role would have been borne only by humans or organizations. However, we now also want to enable investigations run by robot scientists such as ADAM (King et al, Science, 2009)

organization
type: Class
subclass of: material entity
editor preferred term: organization
example of usage: PMID: 16353909.AAPS J. 2005 Sep 22;7(2):E274-80. Review. The joint food and agriculture organization of the United Nations/World Health Organization Expert Committee on Food Additives and its role in the evaluation of the safety of veterinary drug residues in foods.
has curation status: ready for release
definition: An entity that can bear roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members.
editor note: BP: The definition summarizes long email discussions on the OBI developer, roles, biomaterial and denrie branches. It leaves open if an organization is a material entity or a dependent continuant, as no consensus was reached on that. The current placement as material is therefore temporary, in order to move forward with development. Here is the entire email summary, on which the definition is based: 1) there are organization_member_roles (president, treasurer, branch editor), with individual persons as bearers 2) there are organization_roles (employer, owner, vendor, patent holder) 3) an organization has a charter / rules / bylaws, which specify what roles there are, how they should be realized, and how to modify the charter/rules/bylaws themselves. It is debatable what the organization itself is (some kind of dependent continuant or an aggregate of people). This also determines who/what the bearer of organization_roles' are. My personal favorite is still to define organization as a kind of 'legal entity', but thinking it through leads to all kinds of questions that are clearly outside the scope of OBI. Interestingly enough, it does not seem to matter much where we place organization itself, as long as we can subclass it (University, Corporation, Government Agency, Hospital), instantiate it (Affymetrix, NCBI, NIH, ISO, W3C, University of Oklahoma), and have it play roles. This leads to my proposal: We define organization through the statements 1 - 3 above, but without an 'is a' statement for now. We can leave it in its current place in the is_a hierarchy (material entity) or move it up to 'continuant'. We leave further clarifications to BFO, and close this issue for now.
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Bjoern Peters
definition editor: PERSON: Philippe Rocca-Serra
definition editor: PERSON: Susanna Sansone
definition source: GROUP: OBI
imported from: ico.owl
imported from: obi.owl

protocol
type: Class
subclass of: plan specification
editor preferred term: protocol
example of usage: PCR protocol, has objective specification, amplify DNA fragment of interest, and has action specification describes the amounts of experimental reagents used (e..g. buffers, dNTPS, enzyme), and the temperature and cycle time settings for running the PCR.
has curation status: ready for release
definition: A plan specification which has sufficient level of detail and quantitative information to communicate it between investigation agents, so that different investigation agents will reliably be able to independently reproduce the process.
definition editor: PlanAndPlannedProcess Branch
definition source: OBI branch derived + wikipedia (http://en.wikipedia.org/wiki/Protocol_%28natural_sciences%29)
imported from: ico.owl
imported from: obi.owl
ISA alternative term: study protocol

material to be added role
type: Class
subclass of: role
editor preferred term: material to be added role
example of usage: drug added to a buffer contained in a tube; substance injected into an animal;
has curation status: metadata complete
definition: material to be added role is a protocol participant role realized by a material which is added into a material bearing the target of material addition role in a material addition process
definition editor: Role Branch
definition source: OBI
curator note: 9 March 09 from discussion with PA branch
imported from: obi.owl
imported from: vo.owl

drawing a conclusion based on data
type: Class
subclass of: planned process
subclass of: Restriction
  on property: has_specified_input
  some values from: data item
subclass of: Restriction
  on property: has_specified_output
  some values from: conclusion based on data
editor preferred term: drawing a conclusion based on data
example of usage: Concluding that a gene is upregulated in a tissue sample based on the band intensity in a western blot. Concluding that a patient has a infection based on measurement of an elevated body temperature and reported headache. Concluding that there were problems in an investigation because data from PCR and microarray are conflicting. Concluding that 'defects in gene XYZ cause cancer due to improper DNA repair' based on data from experiments in that study that gene XYZ is involved in DNA repair, and the conclusion of a previous study that cancer patients have an increased number of mutations in this gene.
has curation status: metadata complete
has curation status: ready for release
definition: A planned process in which data gathered in an investigation is evaluated in the context of existing knowledge with the objective to generate more general conclusions or to conclude that the data does not allow one to draw general conclusion
definition editor: PERSON: Bjoern Peters
definition editor: PERSON: Jennifer Fostel
definition source: Bjoern Peters
imported from: ico.owl
imported from: obi.owl

planning
type: Class
subclass of: process
subclass of: Class
  intersection of: process
  intersection of: Restriction
    on property: has participant
    some values from: plan specification
editor preferred term: planning
example of usage: The process of a scientist thinking about and deciding what reagents to use as part of a protocol for an experiment. Note that the scientist could be human or a "robot scientist" executing software.
has curation status: ready for release
definition: a process of creating or modifying a plan specification
editor note: 7/18/2011 BP: planning used to itself be a planned process. Barry Smith pointed out that this would lead to an infinite regression, as there would have to be a plan to conduct a planning process, which in itself would be the result of planning etc. Therefore, the restrictions on 'planning' were loosened to allow for informal processes that result in an 'ad hoc plan '. This required changing from 'has_specified_output some plan specifiction' to 'has_participant some plan specification'.
definition editor: Bjoern Peters
definition source: Bjoern Peters
definition source: Plans and Planned Processes Branch
imported from: ico.owl
imported from: obi.owl

target of material addition role
type: Class
subclass of: role
editor preferred term: target of material addition role
example of usage: peritoneum of an animal receiving an interperitoneal injection; solution in a tube receiving additional material; location of absorbed material following a dermal application.
has curation status: metadata complete
definition: target of material addition role is a role realized by an entity into which a material is added in a material addition process
editor note: From Branch discussion with BP, AR, MC -- there is a need for the recipient to interact with the administered material. for example, a tooth receiving a filling was not considered to be a target role.
definition editor: GROUP: Role Branch
definition source: OBI
imported from: obi.owl
imported from: vo.owl

study design execution
type: Class
equivalent class: Class
  intersection of: planned process
  intersection of: Restriction
    on property: realizes
    some values from: Restriction
      on property: concretizes
      some values from: study design
subclass of: planned process
editor preferred term: study design execution
example of usage: injecting a mouse with PBS solution, weighing it, and recording the weight according to a study design.
has curation status: ready for release
definition: a planned process that carries out a study design
definition: a planned process that realizes the concretization of a study design
editor note: removed axiom has_part some (assay or 'data transformation') per discussion on protocol application mailing list to improve reasoner performance. The axiom is still desired.
definition source: branch derived
curator note: 6/11/9: edited at workshop. Used to be: study design execution is a process with the objective to generate data according to a concretized study design. The execution of a study design is part of an investigation, and minimally consists of an assay or data transformation.
imported from: ico.owl
imported from: obi.owl

informed consent process
type: Class
subclass of: planned process
subclass of: Restriction
  on property: has participant
  some values from: Restriction
    on property: has role at some time
    some values from: consenter role
subclass of: Restriction
  on property: has_specified_input
  some values from: informed consent form
subclass of: Restriction
  on property: has_specified_input
  some values from: Homo sapiens
subclass of: Restriction
  on property: has participant
  some values from: Restriction
    on property: has role
    some values from: investigation agent role
editor preferred term: informed consent process
has curation status: metadata complete
has curation status: ready for release
definition: A planned process in which a person or their legal representative is informed about key facts about potential risks and benefits of a process and makes a documented decision as to whether the person in question will participate.
editor note: 09/28/2009 Alan Ruttenberg: This is made a subclass of the higher level processual entity in BFO because I don't want to take a stand on whether it is a process aggregate. Analogous to the situation with Material entity.
definition editor: Person:Alan Ruttenberg
definition source: http://clinicaltrials.gov/ct2/info/glossary#informed
curator note: 2009/09/28 Alan Ruttenberg. Fucoidan-use-case
imported from: ico.owl
imported from: obi.owl

questionnaire
type: Class
subclass of: document
editor preferred term: questionnaire
has curation status: metadata complete
definition: A document with a set of printed or written questions with a choice of answers, devised for the purposes of a survey or statistical study.
editor note: Need to clarify if this is a document or a directive information entity (or what their connection is))
definition editor: PERSON: Jessica Turner
definition source: Merriam-Webster
imported from: ico.owl
imported from: obi.owl

conclusion based on data
type: Class
subclass of: information content entity
subclass of: Restriction
  on property: is_supported_by_data
  some values from: data item
subclass of: Restriction
  on property: is specified output of
  some values from: drawing a conclusion based on data
editor preferred term: conclusion based on data
has curation status: ready for release
definition: An information content entity that is inferred from data.
editor note: In the Philly 2013 workshop, we recognized the limitations of "conclusion textual entity", and we introduced this as more general. The need for the 'textual entity' term going forward is up for future debate.
definition editor: Group:2013 Philly Workshop group
definition source: Group:2013 Philly Workshop group
imported from: ico.owl
imported from: obi.owl

organism
type: Class
equivalent class: Class
  union of: Viruses
  union of: Bacteria
  union of: Archaea
  union of: Eukaryota
subclass of: material entity
editor preferred term: organism
example of usage: animal
example of usage: fungus
example of usage: plant
example of usage: virus
has curation status: organizational term
has curation status: ready for release
definition: A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs.
editor note: 10/21/09: This is a placeholder term, that should ideally be imported from the NCBI taxonomy, but the high level hierarchy there does not suit our needs (includes plasmids and 'other organisms')
editor note: 13-02-2009: OBI doesn't take position as to when an organism starts or ends being an organism - e.g. sperm, foetus. This issue is outside the scope of OBI.
definition editor: GROUP: OBI Biomaterial Branch
definition source: WEB: http://en.wikipedia.org/wiki/Organism
imported from: ico.owl
imported from: obi.owl
imported from: ogg.owl
imported from: vo.owl

data transformation
type: Class
subclass of: planned process
editor preferred term: data transformation
example of usage: The application of a clustering protocol to microarray data or the application of a statistical testing method on a primary data set to determine a p-value.
has curation status: ready for release
definition: A planned process that produces output data from input data.
definition editor: Elisabetta Manduchi
definition editor: Helen Parkinson
definition editor: James Malone
definition editor: Melanie Courtot
definition editor: Philippe Rocca-Serra
definition editor: Richard Scheuermann
definition editor: Ryan Brinkman
definition editor: Tina Hernandez-Boussard
alternative term: data analysis
alternative term: data processing
definition source: Branch editors
imported from: obi.owl

study design
type: Class
subclass of: plan specification
subclass of: Restriction
  on property: has part
  some values from: protocol
editor preferred term: study design
example of usage: a matched pairs study design describes criteria by which subjects are identified as pairs which then undergo the same protocols, and the data generated is analyzed by comparing the differences between the paired subjects, which constitute the results of the executed study design.
has curation status: ready for release
has curation status: pending final vetting
definition: A plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution.
editor note: Editor note: there is at least an implicit restriction on the kind of data transformations that can be done based on the measured data available.
definition editor: PERSON: Chris Stoeckert
alternative term: experimental design
curator note: rediscussed at length (MC/JF/BP). 12/9/08). The definition was clarified to differentiate it from protocol.
imported from: ico.owl
imported from: obi.owl

dialysis
type: Class
subclass of: planned process
subclass of: Restriction
  on property: has_specified_output
  some values from: material entity
editor preferred term: dialysis
example of usage: the use of a dialysis bag of select pore size to remove salt from collagen isolated from mouse cartilage
has curation status: pending final vetting
definition: a protocol application that uses diffusion through a semi-permeable membrane to separate an input material into two fractions of different composition
definition editor: PERSON:Kevin Clancy
definition source: OBI branch derived

genome of Bacteria
type: Class
subclass of: material entity
subclass of: Restriction
  on property: has part
  some values from: gene of Bacteria
subclass of: Restriction
  on property: is genome of organism
  some values from: Bacteria
definition: The genome of an organism of Bacteria
definition editor: Yue Liu, Bin Zhao, Oliver He
imported from: ogg.owl
imported from: vo.owl
organism NCBITaxon ID: 2

genome of Proteobacteria
type: Class
subclass of: genome of Bacteria
subclass of: Restriction
  on property: has part
  some values from: gene of Proteobacteria
subclass of: Restriction
  on property: is genome of organism
  some values from: Proteobacteria
definition: The genome of an organism of Proteobacteria
definition editor: Yue Liu, Bin Zhao, Oliver He
imported from: ogg.owl
imported from: vo.owl
organism NCBITaxon ID: 1224

gene of Bacteria
type: Class
subclass of: material entity
subclass of: Restriction
  on property: is gene of organism
  some values from: Bacteria
definition: A gene of an organism of Bacteria
definition editor: Yue Liu, Bin Zhao, Oliver He
imported from: ogg.owl
imported from: vo.owl
organism NCBITaxon ID: 2

gene of Proteobacteria
type: Class
subclass of: gene of Bacteria
subclass of: Restriction
  on property: is gene of organism
  some values from: Proteobacteria
definition: A gene of an organism of Proteobacteria
definition editor: Yue Liu, Bin Zhao, Oliver He
imported from: ogg.owl
imported from: vo.owl
organism NCBITaxon ID: 1224

health care encounter
type: Class
subclass of: planned process
definition: A temporally-connected health care process that has as participants an organization or person realizing the health care provider role and a person realizing the patient role. The health care provider role and patient are realized during the health care encounter
definition editor: Albert Goldfain
definition source: http://groups.google.com/group/ogms-discuss/browse_thread/thread/a2dbc2ed1dff99d6
curator note: creation date: 2011-02-21T09:57:44Z

inpatient encounter
type: Class
subclass of: health care encounter
definition: A health care encounter involving a patient who has been admitted to a health care facility and remains in a hospital facility for at least one night.
definition editor: Albert Goldfain
definition source: http://groups.google.com/group/ogms-discuss/browse_thread/thread/a2dbc2ed1dff99d6
curator note: creation date: 2011-02-21T09:57:44Z

injury
type: Class
subclass of: material entity
definition: A disorder that involves some structural damage that is immediately caused by a catastrophic external force.
editor note: At the scale of organism (as opposed to the cellular scale or the population scale), an injury is typically the result of a catastrophic event. Consider the implications of making 'injury' a subtype of 'disorder'. Note: Adopted subtype of disorder, and injury can occur at the scale of organism down to cellular level.
definition editor: Albert Goldfain Sagar Jain
definition source: http://groups.google.com/group/ogms-discuss/browse_thread/thread/ca0ad373f27774c5 OGMS call adoption- 16 SEPT 2015 https://docs.google.com/document/d/1iiV1-fTS7BUUSzDw3N_Afx42698YWf54-FOTY2NkAxo/edit
curator note: creation date: 2011-09-20T09:57:44Z edited date: 30 SEPT 2015

obsolete survey data
type: Class
subclass of: ObsoleteClass
definition editor: Alice Nzinga
definition editor: Mathias Brochhausen
term replaced by: survey data
deprecated: true

obsolete survey plan specification
type: Class
subclass of: ObsoleteClass
definition editor: Alice Nzinga
definition editor: Mathias Brochhausen
term replaced by: survey plan specification
deprecated: true

obsolete survey execution
type: Class
subclass of: ObsoleteClass
term replaced by: survey execution
deprecated: true

social security number
type: Class
subclass of: centrally registered identifier
definition: Social Security Number(SSN) is a Centrally Registered IDentifier that is a nine-digit number issued to U.S. citizens, permanent residents, and temporary (working) residents under section 205(c) of the Social Security Act, codified as 42 U.S.C. § 405(c). The number is issued to an individual by the Social Security Administration, an independent agency of the United States government. Its primary purpose is to track individuals for Social Security purposes.
alternative term: SSN
definition source: http://en.wikipedia.org/wiki/Social_Security_number
creator: Cheng Chen(cxchen1@ualr.edu)

human social role
type: Class
subclass of: organism social role
subclass of: Homo sapiens role
definition: A social role inhering in a human being.
definition editor: Mathias Brochhausen
definition editor: William R. Hogan

party to a legal entity
type: Class
subclass of: role in human social processes
subclass of: Class
  intersection of: Restriction
    on property: characteristic of
    some values from: Class
      union of: Homo sapiens
      union of: organization
  intersection of: Restriction
    on property: characteristic of
    all values from: Class
      union of: Homo sapiens
      union of: organization

party to a legal proceeding
type: Class
subclass of: party to a legal entity

party to a legal agreement
type: Class
subclass of: party to a legal entity

party to a marriage contract
type: Class
subclass of: party to a legal agreement
subclass of: Homo sapiens role

party to a power of attorney
type: Class
subclass of: party to a legal entity

gender role
type: Class
subclass of: organism role
definition: A human social role borne by a human being being realized in behaviour which is considered socially appropriate for individuals of a specific sex in the context of a specific culture.
definition editor: Mathias Brochhausen
definition source: http://en.wikipedia.org/wiki/Gender_role

male gender role
type: Class
subclass of: gender role
subclass of: Class
  intersection of: Restriction
    on property: characteristic of
    some values from: organism
  intersection of: Restriction
    on property: characteristic of
    all values from: organism
definition: A gender role borne by a human being that is realized in behaviour which is considered socially appropriate for individuals of the male sex in the context of the culture in question.
definition editor: Mathias Brochhausen
alternative term: male gender

female gender role
type: Class
subclass of: gender role
subclass of: Class
  intersection of: Restriction
    on property: characteristic of
    some values from: organism
  intersection of: Restriction
    on property: characteristic of
    all values from: organism
definition: A gender role borne by a human being that is realized in behaviour which is considered socially appropriate for individuals of the female sex in the context of the culture in question.
definition editor: Mathias Brochhausen
alternative term: female gender

health care role
type: Class
subclass of: role in human social processes
subclass of: Restriction
  on property: realized in
  some values from: health care encounter
definition: A role in human social processes that is realized by health care processes such as seeking or providing treatment for disease and injury, diagnosing disease and injury, or undergoing diagnosis.
definition editor: Mathias Brochhausen
definition editor: William R. Hogan

patient role
type: Class
subclass of: health care role
subclass of: organism role
definition: A health care role borne by an organism and that is realized by presenting to a health care provider in a clinical encounter.
definition editor: Amanda Hicks
definition editor: Mathias Brochhausen
alternative term: patient
definition source: CAFE domain expert working group.
comment: In order to avoid the presumption of the formal structures and institutions of Western civilization, bearing a patient role does not entail that the organism presents at an official place of business, with an organization formally and legally registered with various gov't entities, with a person endowed by the gov't with certain certifications.

health care provider role
type: Class
subclass of: health care role
subclass of: Class
  intersection of: Restriction
    on property: characteristic of
    some values from: Class
      union of: Homo sapiens
      union of: organization
  intersection of: Restriction
    on property: characteristic of
    all values from: Class
      union of: Homo sapiens
      union of: organization
definition: A health care role inhering in an organization or human being that is realized by a process of providing health care services to an organism.
definition editor: Mathias Brochhausen
definition editor: William R. Hogan

physician role
type: Class
subclass of: institutional health care provider role
definition: A health care role borne by a human being and realized by promoting, maintaining or restoring human health through the study, diagnosis, and treatment of disease, injury and other physical and mental impairments.
definition editor: Mathias Brochhausen
alternative term: physician
definition source: http://en.wikipedia.org/wiki/Physician

nurse role
type: Class
subclass of: institutional health care provider role
definition: A health care role borne by a human being and realized by the care of individuals, families, and communities so they may attain, maintain, or recover optimal health and quality of life.
definition editor: Mathias Brochhausen
alternative term: nurse
definition source: based on: http://en.wikipedia.org/wiki/Nursing

health care provider organization role
type: Class
subclass of: organization health care role
subclass of: Restriction
  on property: realized in
  some values from: health care encounter
definition: A role that inheres in an organization and that is realized by the providing of services in a health care encounter.
contributor: Mathias Brochhausen
creator: Amanda Hicks

obsolete person health care provider role
type: Class
subclass of: ObsoleteClass
deprecated: true

physician practice
type: Class
subclass of: health care provider organization role
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: organization
    intersection of: Restriction
      on property: has organization member
      min qualified cardinality: 2
      on class: Restriction
        on property: bearer of
        some values from: physician role
definition: A health care provider organization role that inheres in an organization consisting of two or more physicians.
definition editor: Amanda Hicks

obsolete_hospital role
type: Class
subclass of: ObsoleteClass
definition: A role borne by an organization and realized by providing healthcare services by healthcare professionals of multiple different disciplines of medicine and enabling stationary treatment.
definition editor: Mathias Brochhausen
alternative term: hospital
deprecated: true

integrated delivery network
type: Class
subclass of: health care provider organization role
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: organization
    intersection of: Restriction
      on property: has organization member
      all values from: organization
definition: A health care provider organization role that inheres in an organization that is comprised of other organizations.
definition editor: Amanda Hicks

aggregate of objectual organisms
type: Class
subclass of: object aggregate
subclass of: Restriction
  on property: has member
  all values from: Class
    intersection of: object
    intersection of: organism
definition: An object aggregate of objectual organisms.
comment: Any arbitrary collection of organisms. They need not be of the same taxonomic class.

collection of humans
type: Class
subclass of: aggregate of objectual organisms
subclass of: Restriction
  on property: has member
  all values from: Homo sapiens
definition: An object aggregate all of whose components are human beings.

obsolete role in human social processes
type: Class
subclass of: ObsoleteClass
definition: A role inhering in an entity realized by social interactions in human society.
definition editor: Mathias Brochhausen
comment: Previous definition: A role played by an entity in human social processes.
deprecated: true

organization social role
type: Class
subclass of: organization role
subclass of: role in human social processes
definition: A role in human social processes that inheres in an organization.
definition editor: William R. Hogan
comment: Defined class that we will ultimately move to an application ontology. We are leaving here for now until we determine which application ontology: it is likely going to be an ontology that does not currently (2012-06-05) exist. Ditto for its current descendants.

organism social role
type: Class
subclass of: organism role
subclass of: role in human social processes
definition: A role in human social processes that inheres in an organism.
definition editor: William R. Hogan Mathias Brochhausen
comment: Defined class that we will ultimately move to an application ontology. We are leaving here for now until we determine which application ontology: it is likely going to be an ontology that does not currently (2012-06-05) exist. Ditto for its current descendants.
comment: Includes animals as well as humans. For example, pet, assistance animal, animal grown for food, work animal, domesticated animal, K-9, etc. Human roles include gender role, party to legal entities, health care provider roles like doctor, nurse, etc.
comment: Previous definition: A role in human social processes played by an organism.

organization health care role
type: Class
subclass of: organization social role
definition: An organization social role that, if realized, is realized by either a health care process or an ancillary health care process
comment: Previous definition: An organization social role played by an organization in health care processes.

obsolete geopolitical organization
type: Class
subclass of: ObsoleteClass
definition: An organization that governs the people living in a particular geographical region or aggregate of geographical regions. The geographical region it governs can change over time (such as the westward expansion of the United States and the addition of Hawaii).
definition editor: William R. Hogan
alternative term: geopolitical organization
deprecated: true

obsolete geopoli organization
type: Class
subclass of: ObsoleteClass
alternative term: geopoli organization
deprecated: true

human patient role
type: Class
equivalent class: Class
  intersection of: patient role
  intersection of: Restriction
    on property: characteristic of
    some values from: Homo sapiens
subclass of: patient role
subclass of: Homo sapiens role
definition: A patient role that inheres in a human being.

obsolete major administrative subdivision
type: Class
subclass of: ObsoleteClass
definition: A subnational entity that is the primary organizational member of a nation, is subject to the full set of laws of the nation, enjoys all the privileges established under the laws of the nation, is not a member of any other geopolitical entity, and itself governs a part of the geographical region governed by the nation.
alternative term: major administrative subdivision
comment: example: Northern Ireland
deprecated: true

obsolete geopolitical dependency
type: Class
subclass of: ObsoleteClass
definition: A subnational entity that does not possess full political independence or sovereignty as a sovereign state, but remains politically outside of the controlling state and controls a geographical region that is outside the controlling state's integral region.
alternative term: geopolitical dependency
comment: Typically, the common feature is that the dependency does not conduct foreign affairs, and relegates this authority to the sovereign state. BUt otherwise, it is largely or completely autonomous relative to the administrative subdivisions. Examples include Puerto Rico (U.S.), Guam (U.S.), Greenland (Denmark), French Polynesia (France), and Falkland Islands (United Kingdom).
deprecated: true

aggregate of organizations
type: Class
equivalent class: Class
  intersection of: Class
    complement of: organization
  intersection of: Restriction
    on property: has member
    all values from: organization
  intersection of: Restriction
    on property: has member
    min qualified cardinality: 2
    on class: organization
subclass of: material entity
subclass of: Restriction
  on property: has member
  some values from: organization
definition: An object aggregate that is not itself an organization and whose members are only organizations that have some feature in common
definition editor: William R. Hogan Amanda Hicks
comment: It is often convenient to group organizations together that otherwise might not even interact with one another.

obsolete aggregate of sovereign states
type: Class
subclass of: ObsoleteClass
definition: An aggregate of sovereign states that share some feature in common, but is not an organization nor necessarily the outcome of some treaty among them.
definition editor: An aggregate of geopoli organizations that is not itself a sovereign state and whose members are only sovereign states that have some feature in common
definition editor: William R. Hogan
alternative term: aggregate of sovereign states
deprecated: true

obsolete aggregate of geopoli organizations
type: Class
subclass of: ObsoleteClass
definition: An object aggregate that is not itself a geopolitical organization and whose members are only geopolitical organizations that have some feature in common
definition editor: Amanda Hicks
definition editor: William R. Hogan
alternative term: aggregate of geopoli organizations
deprecated: true

obsolete aggregate of dependencies
type: Class
subclass of: ObsoleteClass
definition: An aggregate of geopoli organizations that is not itself a geopolitical dependency and whose members are only geopolitical dependencies that have some feature in common.
definition editor: Amanda Hicks
alternative term: aggregate of dependencies
deprecated: true

obsolete aggregate of major administrative subdivisions
type: Class
subclass of: ObsoleteClass
definition: An aggregate of geopoli organizations that is not itself a major administrative subdivision and whose members are only major administrative subdivisions that have some feature in common
definition editor: Amanda Hicks
alternative term: aggregate of major administrative subdivisions
deprecated: true

legal person role
type: Class
subclass of: role in human social processes
subclass of: Class
  intersection of: Restriction
    on property: characteristic of
    some values from: Class
      union of: Homo sapiens
      union of: collection of humans
  intersection of: Restriction
    on property: characteristic of
    all values from: Class
      union of: Homo sapiens
      union of: collection of humans
definition: A role borne by a human individual or by a collection of humans regarded as possessing rights and duties enforeable at law.
definition editor: Mathias Brochhausen
definition source: Malcolm N. Shaw: International Law. Cambridge University Press, Cambridge, 2008.
comment: We are aware of the fact that Wikipedia's definition differs from ours by saying that "Legal personality (...) is the characteristic of a non-living entity regarded by law to have the status of personhood" (http://en.wikipedia.org/wiki/Legal_personality) However, Shaw explicates: "In any legal system, certain entities, whether they be individuals or companies, will be regarded as possessing rights and duties enforceable at law. Thus an individual may prosecute or be prosecuted for assault and a company can sue for breach of contract. They are able to do this because the law recognises them as 'legal persons' possessing the capacity to have and to maintain certain rights, and being subject to perform specific duties. (...) In municipal law individuals, limited companies and public corporations are recognized as each possessing a distinct legal personality, the terms of which are circumscribed by the relevant legislation" (Shaw MN: International Law. Sixth Edition. Cambridge University Press, Cambridge, 2008). We hold that Shaw's position is ontological more prolific since it not only allows to explain how groups of individuals become recognized as unities at law, but also how different individuals can hold different legal personality roles (always against the context of one legal system). The latter will proof useful when dealing with the representing comatous patients or minorsat law in ontologies.

smoker role
type: Class
subclass of: Homo sapiens role
definition: A role that inheres in an organism and is realized by habitually smoking tobacco products.

intravenous drug user
type: Class
subclass of: Homo sapiens role

obsolete intergovernmental organization
type: Class
subclass of: ObsoleteClass
definition: an intergovernmental organization that has at least three member states, that has activies in at least three states, and that is unified by some formal intergovernmental agreement
definition editor: Amanda Hicks
alternative term: intergovernmental organization
definition source: "IGOs are organizations whose memebers include at lesat three states, that have activities in several states, and whose members are held together by a formal intergovernmental agreement ... These organizations range in size from three members (North American Free Trade Argreement [NAFTA]) to more than 190 memembers (Universal Postal Union (UPU)]. Memebers may come from primarily one georgraphic regioni (Oragnaization of American States [OAS]) or from all geographic regions (World Bank). although soem IGOs are designed to achieve a single purpose (Organization of Petroleum exporting countries [OPEC]), others have been developed for multiple tasks (United Nations [UN}). ... IGOs are recognized subjects of international law with separate standing fromt heir member states." Karns and Mingst I(2004) p. 7
contributor: Katrina Donovan
comment: examples: North American Free Trade Argreement [NAFTA] , Universal Postal Union [UPU], Oragnaization of American States [OAS], World Bank), Organization of Petroleum exporting countries [OPEC] United Nations [UN[, The World Trade Organization [WTO], The World Health Organization [WHO], UNICEF
deprecated: true

obsolete nongovernmental organization
type: Class
subclass of: ObsoleteClass
definition: a geopolitical organization that is voluntary and private, whose members are individual persons or organizations that come together to acheive a common purpose.
alternative term: nongovernmental organizations
definition source: NGOs are private voluntary organizations whose members are individuals or associations that come together to acheive a common purpose. Some organizations are formed to advocate a particular cause such as human rights, peace, or envirnomental projetion. Others are established to provide services such as disaster relief, humantarian aid in war-torn socieities, or development assistance. ... National level groups are often called interest or pressure groups, and many of them are now linked to counterpart groups in other countries through transnational networks or federations. International NGOs, like IGOs, may draw their members from one region or several regions, and they may have very specific functions or be multi-functional. Karns and Mingst (2004) p. 10f.
contributor: Katrina Donovan
comment: Examples: Internaltion Federation of Red Cross and Red Crescent Societies, Oxfam, CARE, Doctors Without Borders, World Wildlife Fund, Transparency International, Human Rights Watch, Amnesty International, and Save the Children.
deprecated: true

obsolete private governance organizations
type: Class
subclass of: ObsoleteClass
definition editor: Amanda Hicks
alternative term: private governance organizations
definition source: "Although the very meaning of the term is controversial, it involves authoritative decsionmaking in areas that once were part of national legal frameworks, the government, the sovereign state, or the public sector." Karns and Mingst (2004) p. 14.
contributor: Katrina Donovan
comment: Examples: private bond-rating agencies such as Moody's Investors Service, International Chamber of Commerce, Worldwide Responsible Apparel Manufacturing Principles, Forest Stewardship
deprecated: true

obsolete governmental organization
type: Class
subclass of: ObsoleteClass
definition: An organization that governs the people living in a particular geographical region or aggregate of geographical regions. The geographical region it governs can change over time (such as the westward expansion of the United States and the addition of Hawaii). Note: this definition was taken over from "geopolitical organization".
definition editor: Amanda Hicks
alternative term: governmental organization
comment: IMPORTANT: The label "geopolitical organization" was previously used for OMRSE_00000044 (governmental organization). "geopoli organization" is a label for a new and different class.
deprecated: true

obsolete sovereign state
type: Class
subclass of: ObsoleteClass
definition: A governmental organization with a defined territory on which it exercises internal and external sovereignty, a permanent population, a government, and the capacity to enter into relations with other sovereign states.
definition editor: William R. Hogan
alternative term: nation
alternative term: nation state
alternative term: sovereign state
definition source: http://en.wikipedia.org/wiki/Sovereign_state
comment: Per Wikipedia, the word 'nation' does not always refer to soverign states. For example, the "nation of Islam".
deprecated: true

obsolete subnational entity
type: Class
subclass of: ObsoleteClass
definition: a governmental organization that has a local, regional, or territorial government that recognizes a sovereign state as its higher political authority
definition editor: Amanda Hicks
definition editor: William R. Hogan
alternative term: subnational entity
deprecated: true

obsolete supranational entity
type: Class
subclass of: ObsoleteClass
definition editor: Amanda Hicks
alternative term: supranational entity
comment: e.g., the EU
deprecated: true

material entity role
type: Class
equivalent class: Class
  intersection of: role
  intersection of: Restriction
    on property: characteristic of
    some values from: material entity
subclass of: role
subclass of: Restriction
  on property: characteristic of
  some values from: material entity
subclass of: Restriction
  on property: characteristic of
  all values from: material entity

organism role
type: Class
equivalent class: Class
  intersection of: material entity role
  intersection of: Restriction
    on property: characteristic of
    some values from: organism
subclass of: material entity role
subclass of: Restriction
  on property: characteristic of
  some values from: organism
subclass of: Restriction
  on property: characteristic of
  all values from: organism

Homo sapiens role
type: Class
equivalent class: Class
  intersection of: organism role
  intersection of: Restriction
    on property: characteristic of
    some values from: Homo sapiens
subclass of: organism role
subclass of: Restriction
  on property: characteristic of
  some values from: Homo sapiens
subclass of: Restriction
  on property: characteristic of
  all values from: Homo sapiens

organization role
type: Class
equivalent class: Class
  intersection of: role
  intersection of: Restriction
    on property: characteristic of
    some values from: organization
subclass of: material entity role
subclass of: Restriction
  on property: characteristic of
  some values from: organization
subclass of: Restriction
  on property: characteristic of
  all values from: organization

hospital function
type: Class
subclass of: function
definition: A function inhering in a material entity that, if realized, is realized by the material entity being the site at which inpatient and outpatient healthcare is provided to a patient population.
definition editor: Mathias Brochhausen

school function
type: Class
subclass of: function
definition: A function inhering in a material entity that, if realized, is realized by that material entity being the site at which formal education is provided to a student population.
definition editor: Mathias Brochhausen

hospital role
type: Class
subclass of: health care provider organization role
definition: A healthcare provider role that inheres in an organization and is realized by providing inpatient care.
definition editor: Mathias Brochhausen

school role
type: Class
subclass of: organization social role
definition editor: An organization social role that inheres in an organization and is realized by providing formal education to students.
definition editor: Mathias Brochhausen

hospital organization
type: Class
equivalent class: Class
  intersection of: organization
  intersection of: Restriction
    on property: bearer of
    some values from: hospital role
subclass of: organization
subclass of: Restriction
  on property: bearer of
  some values from: hospital role
definition: An organization that is the bearer of a hospital role.
definition editor: Mathias Brochhausen

school organization
type: Class
equivalent class: Class
  intersection of: organization
  intersection of: Restriction
    on property: bearer of
    some values from: school role
subclass of: organization
subclass of: Restriction
  on property: bearer of
  some values from: school role
definition: An organization that is the bearer of a school role.
definition editor: Mathias Brochhausen

student role
type: Class
subclass of: Class
  intersection of: human role within an organization
  intersection of: Restriction
    on property: is specified output of
    some values from: Class
      intersection of: deontic declaration
      intersection of: Restriction
        on property: process has causal agent
        some values from: school organization
definition: A human social role that, if realized, is realized by the process of formal education that the bearer undergoes.
definition editor: Mathias Brochhausen

nursery school role
type: Class
subclass of: school role
definition editor: Mathias Brochhausen

primary school role
type: Class
subclass of: school role
definition editor: Mathias Brochhausen

architectural structure
type: Class
subclass of: material entity
definition: A material entity that is a human made strcuture with firm connection between its foundation and the ground.
definition editor: Mathias Brochhausen
definition source: http://de.wikipedia.org/wiki/Bauwerk
comment: "Building" is a subclass of this.
comment: This type of entity is referred to as "Bauwerk" or "Bauliche Anlage".

facility
type: Class
equivalent class: Class
  intersection of: architectural structure
  intersection of: Restriction
    on property: bearer of
    some values from: function
subclass of: architectural structure
subclass of: Restriction
subclass of: Restriction
  on property: bearer of
  some values from: function
definition: An architectural structure that bears some function.
definition editor: Mathias Brochhausen

Axiom
annotated source: facility
annotated property: subClassOf
annotated target: Restriction
version info: 09/09/2017

hospital facility
type: Class
equivalent class: Class
  intersection of: Class
    union of: Restriction
      on property: is owned by
      some values from: hospital organization
    union of: Restriction
      on property: is administered by
      some values from: hospital organization
  intersection of: Restriction
    on property: bearer of
    some values from: hospital function
subclass of: health care facility
subclass of: Restriction
  on property: contains process
  some values from: acute care encounter
subclass of: Restriction
  on property: bearer of
  some values from: hospital function
definition: A health care facility that bears the function to provide acute and intensive healthcare services and that is run by a hospital organization and is the bearer of a hospital function.
definition editor: Mathias Brochhausen
definition editor: William Hogan

school facility
type: Class
equivalent class: Class
  intersection of: facility
  intersection of: Class
    union of: Restriction
      on property: is owned by
      some values from: school organization
    union of: Restriction
      on property: is administered by
      some values from: school organization
  intersection of: Restriction
    on property: bearer of
    some values from: school function
subclass of: facility
subclass of: Restriction
  on property: bearer of
  some values from: school function
definition: A facility that is run by a school organization and is the bearer of a school function.
definition editor: Mathias Brochhausen

secondary school role
type: Class
subclass of: school role
definition editor: Mathias Brochhausen

pediatric trauma patient role
type: Class
subclass of: trauma patient role
definition: A trauma patient role that inheres in a homo sapiens who is under the age of 15 years.
definition editor: Amanda Hicks
alternative term: pediatric trauma patient
definition source: The following definition for 'pediatric trauma patient' was approved by the CAFE team of domain experts (experts in trauma care) May 29, 2015. "A trauma patient who is under the age of 15 years."

injured patient role
type: Class
equivalent class: Class
  intersection of: patient role
  intersection of: Restriction
    on property: characteristic of
    some values from: Class
      intersection of: organism
      intersection of: Restriction
        on property: has part
        some values from: injury
subclass of: patient role
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: organism
    intersection of: Restriction
      on property: has part
      some values from: injury
definition: A patient role that inheres an organism suffering one or more injuries.
definition editor: Amanda Hicks
alternative term: injured patient
definition source: The following definition for 'injured patient' was approved by the CAFE team of domain experts (experts in trauma care) May 29, 2015. A patient suffering one or more injuries.

burn patient role
type: Class
subclass of: injured patient role
definition: A patient role that inheres in an organism suffering a thermal, electrical, chemical or radiation burn.
definition editor: Amanda Hicks
definition editor: The following definition for 'burn patient' was approved by the CAFE team of domain experts (experts in trauma care) May 29, 2015. A patient suffering a thermal, electrical, chemical or radiation burn.
definition editor: burn patient

physiatrist role
type: Class
subclass of: physician role
definition: A physician role that is created by training and certification in rehabilitation/physical medicine and that is realized by the provision of or supervising of the provision of rehabilitation or physical therapy to a patient.
definition editor: Amanda Hicks
alternative term: physiatrist
definition source: The following definition for 'physiatrist' was approved by the CAFE team of domain experts (experts in trauma care) May 29, 2015. A physician with training and certification in rehabilitation/physical medicine.
comment: Definition updated May 5, 2016. Original definitions was, a health care role borne by a human being and realized by training and certification in rehabilitation medicine.

trauma patient role
type: Class
subclass of: patient role
definition: A patient role that inheres in an organism with some non-superficial traumatic injury. The role is realized by admision to a hospital, transfer from one hospital to another for the purpose of trauma care, or has death as a result of the traumatic injury.
definition editor: Amanda Hicks
alternative term: trauma patient
definition source: The following definition for 'trauma patient' was approved by the CAFE team of domain experts (experts in trauma care) May 29, 2015. A patient sustaining an injury who has been admitted to the hospital, transferred from one hospital to another for the purpose of trauma care, or has died as a result of the traumatic injury.

housing unit
type: Class
subclass of: material entity
subclass of: Class
  intersection of: material entity
  intersection of: Restriction
    on property: has part
    some values from: site
  intersection of: Restriction
    on property: has part
    some values from: material entity
  intersection of: Restriction
    on property: bearer of
    qualified cardinality: 1
    on class: residence function
definition: A material entity that has as parts one or more sites large enough to contain humans, has as part one or more material entities that separates it from other sites, and bears a residence function.
definition editor: Amanda Hicks
definition source: https://github.com/ufbmi/OMRSE/wiki/Housing-unit-and-Household
comment: Housing units are individuated by their residence functions.

residence function
type: Class
subclass of: function
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: material entity
    intersection of: Restriction
      on property: has part
      some values from: site
definition: A function that inheres in a material entity and, if realized, is realized by protecting persons and their possessions from weather and by some person or group of persons habitually sleeping in at least one site that is contained by that material entity.
definition editor: Amanda Hicks

household
type: Class
equivalent class: Class
  intersection of: Class
    union of: Homo sapiens
    union of: collection of humans
  intersection of: Restriction
    on property: participates in
    some values from: Class
      intersection of: process
      intersection of: Restriction
        on property: realizes
        some values from: residence function
      intersection of: Restriction
        on property: occurs in
        some values from: housing unit
subclass of: material entity
subclass of: Restriction
  on property: participates in
  some values from: Class
    intersection of: process
    intersection of: Restriction
      on property: realizes
      some values from: residence function
    intersection of: Restriction
      on property: occurs in
      some values from: housing unit
definition: A human or collection of humans that occupies a housing unit by storing their possessions there and habitually sleeping there thereby participating in the realization of that housing unit's residence function.
definition editor: Amanda Hicks
comment: Note in OMRSE it is the housing unit, not the people living there, that are the bearers of a "residence function". Note the distinction between being a residence and a resident.
comment: Note that it is not possible in OWL 2, at least that we have yet found, to say that the housing unit in which the process occurs is the same one that is the bearer of the residence function (that the process realizes).

job role
type: Class
subclass of: role in human social processes
subclass of: Restriction
  on property: realized in
  some values from: employment process
subclass of: Restriction
  on property: is specified output of
  some values from: Class
    intersection of: deontic declaration
    intersection of: Restriction
      on property: process has causal agent
      some values from: Class
        intersection of: Class
        intersection of: Restriction
definition: A role in human social processes that, if realized, is realized when the bearer provides labor or services in exchange for a wage or salary as specified by some deontic declaration.
definition editor: Amanda hicks
alternative term: employee

workplace facility
type: Class
subclass of: facility
subclass of: Restriction
  on property: bearer of
  some values from: workplace function
definition editor: Amanda Hicks

workplace function
type: Class
subclass of: function
definition: a function inhering in a material entity that, if realized, is realized by that material entity being the site where the work of some organization is carried out
definition editor: Amanda Hicks

US census householder role
type: Class
subclass of: human social role
definition: A US Census householder role is a human social role that, if realized, is realized by that person being a member of a household and either owning or renting the housing unit in which that household resides and being designated as the householder. If there is only one member of the household who owns or rents the housing unit, that person is designated the householder by default.
definition editor: Amanda Hicks
definition source: http://www.census.gov/cps/about/cpsdef.html last accessed on June 30, 2015

US Census reference person role
type: Class
subclass of: human social role
subclass of: Restriction
  on property: realized in
  some values from: documenting
subclass of: Restriction
  on property: characteristic of
  some values from: Class
    intersection of: Homo sapiens
    intersection of: Restriction
      on property: member of
      some values from: household
definition: A US cenus reference person role is a human social role that inheres in a Homo sapiens who is a member of a household and is realized by other persons in the household being recorded in the US census in relation to that person.
definition editor: Amanda Hicks
definition source: http://www.census.gov/cps/about/cpsdef.html last accessed June 30, 2015

obsolete OMB ethnic identity datum
type: Class
subclass of: ObsoleteClass
definition: An ethnic identity datum that is the output of an ethnic identification process that uses OMB terminology for ethnicity or terminology that is mapped the OMB ethnicity terms.
definition editor: Amanda Hicks
term replaced by: OMB ethnic identity information content entity
deprecated: true

enrollment end date
type: Class
subclass of: one-dimensional temporal region

obsolete socio-legal human social role
type: Class
subclass of: ObsoleteClass
definition editor: A role that concretizes a socio-lega generically dependent continuant
definition editor: Amanda Hicks
deprecated: true

human role within an organization
type: Class
subclass of: Class
  intersection of: human social role
  intersection of: Restriction
    on property: is specified output of
    some values from: Class
      intersection of: deontic declaration
      intersection of: Restriction
        on property: process has causal agent
        some values from: Class
definition: A human social role that is created by a deontic declaration performed by an organization.
definition editor: Amanda Hicks
alternative term: human organizational role

employer role
type: Class
subclass of: role in human social processes
subclass of: Restriction
  on property: realized in
  some values from: employment process
definition: a role in human social processes that is realized when the bearer provides a wage or salary in exchange for some labour or services as specified by some declaration

age measurement datum
type: Class
subclass of: time measurement datum

contract
type: Class
subclass of: document
definition: A document that records a legally binding agreement between two or more parties.
editor note: A contract is a document that is the specified output of a legally binding document act and records a legally binding agreement between two or more parties.

indemnity contract
type: Class
subclass of: Class
  intersection of: contract
  intersection of: Restriction
    on property: has part
    some values from: conditional specification
  intersection of: Restriction
    on property: has part
    some values from: objective specification
  intersection of: Restriction
    on property: has part
    some values from: action specification
  intersection of: Restriction
    on property: has part
    some values from: plan specification
definition: A contract by which one party secures the other against pecuniary loss by payment of a sum of money if a specified event occurs.
definition editor: Amanda Hicks

insurance policy
type: Class
subclass of: indemnity contract
subclass of: Class
  intersection of: indemnity contract
  intersection of: Restriction
    on property: is specified output of
    some values from: Class
      intersection of: deontic document act
      intersection of: Restriction
        on property: process has causal agent
        some values from: insurance organization
      intersection of: Restriction
        on property: process has causal agent
        some values from: Class
definition: An indemnity contract that distributes risk among a group of people
definition editor: Amanda Hicks

insured party role
type: Class
subclass of: role in human social processes
subclass of: Class
  intersection of: role in human social processes
  intersection of: Restriction
    on property: participates in
    some values from: Class
      intersection of: deontic document act
      intersection of: Restriction
        on property: has_specified_output
        some values from: insurance policy
  intersection of: Restriction
    on property:
      inverse of: is about
    some values from: Class
      intersection of: conditional specification
      intersection of: Restriction
        on property: part of
        some values from: insurance policy
definition: A role that inheres in an organism that is able to receive benefits from an insurance policy. The role, if realized, is realized by receiving benefits that are covered by the insurance policy.
definition editor: Amanda Hicks

insurance organization
type: Class
subclass of: organization
subclass of: Class
  intersection of: organization
  intersection of: Restriction
    on property: bearer of
    some values from: party to an insurance policy
  intersection of: Restriction
    on property: bearer of
    some values from: Class
      intersection of: payer role
      intersection of: Restriction
        on property: is specified output of
        some values from: deontic document act
  intersection of: Restriction
    on property:
      inverse of: is about
    some values from: Class
      intersection of: action specification
      intersection of: Restriction
        on property: part of
        some values from: insurance policy
definition: An organization that secures a group of people against pecuniary loss by payment of a sum of money if a a specified event occurs.
definition editor: Amanda Hicks

policy holder role
type: Class
subclass of: Class
  intersection of: insured party role
  intersection of: Restriction
    on property: characteristic of
    some values from: Restriction
      on property: bearer of
      some values from: party to an insurance policy
definition: An insured party role that inheres in a person who participates in the creation of the insurance contract and is eligible to receive benefits as specified by the insurance contract.
definition editor: Amanda Hicks

payer role
type: Class
subclass of: role in human social processes

party to an insurance policy
type: Class
subclass of: party to a legal agreement

enrollment start date
type: Class
subclass of: one-dimensional temporal region

obsolete racial identity datum
type: Class
subclass of: ObsoleteClass
definition: A racial identity is an information content entity that is the output of some racial identitification process and is intended to be a truthful statement about the genetic or cultural race of a person. Unlike data items they are not necessilary contributed or acquired by a reliable method.
term replaced by: racial identity information content entity
deprecated: true

racial identification process
type: Class
subclass of: Class
  intersection of: identification process
  intersection of: Restriction
    on property: has_specified_output
    some values from: Restriction
      on property: part of
      some values from: obsolete racial identity datum

obsolete ethnic identity datum
type: Class
subclass of: ObsoleteClass
definition: An ethnic identity datum is an information content entity that is the output of some ethnic identitification process and is intended to be a truthful statement about the cultural or national heritage of a person. Unlike data items they are not necessilary contributed or acquired by a reliable method.
definition editor: Amanda Hicks
term replaced by: ethnic identity information content entity
deprecated: true

ethnic identification process
type: Class
subclass of: Class
  intersection of: identification process
  intersection of: Restriction
    on property: has_specified_output
    some values from: Restriction
      on property: part of
      some values from: obsolete ethnic identity datum

health care facility
type: Class
subclass of: facility
subclass of: Class
  union of: Class
    intersection of: facility
    intersection of: Restriction
      on property: is owned by
      some values from: Restriction
        on property: bearer of
        some values from: health care provider organization role
  union of: Restriction
    on property: is administered by
    some values from: Restriction
      on property: bearer of
      some values from: health care provider organization role
definition: A facility bearing the function to provide healthcare and that is administered by a health care organization for the purpose of providing health care to a patient or patient population.
definition editor: William Hogan

US Census unemployed role
type: Class
subclass of: human social role
definition: A human social role that inheres in a human who is legally eligible to work, is conferred by the U.S. Census Bureau, and is realized by the bearer not working and either making active efforts to find employment in the four weeks prior to the reference week or waiting to be recalled from temporary layoff.
definition editor: Amanda Hicks

hospice facility
type: Class
subclass of: health care facility
subclass of: Restriction
  on property: contains process
  some values from: skilled nursing encounter
subclass of: Restriction
  on property: bearer of
  some values from: hospice function
definition: A health care facility that bears a function to provide healthcare to the sick or terminally ill
definition editor: Amanda Hicks
definition editor: Emma Norris
definition editor: William Hogan
definition source: Human Behaviour Change Project

skilled nursing facility
type: Class
subclass of: community living health care facility
subclass of: Restriction
  on property: contains process
  some values from: skilled nursing encounter
subclass of: Restriction
  on property: bearer of
  some values from: skilled nursing function
definition editor: Amanda Hicks

rehabilitation facility
type: Class
subclass of: community living health care facility
subclass of: Restriction
  on property: contains process
  some values from: skilled nursing encounter
subclass of: Restriction
  on property: bearer of
  some values from: rehabilitation function
definition: A facility to assist in physical or addiction recovery
definition editor: Amanda Hicks
definition editor: Emma Norris
definition editor: William Hogan
definition source: Human Behaviour Change Project

nursing home facility
type: Class
subclass of: community living health care facility
subclass of: Restriction
  on property: contains process
  some values from: skilled nursing encounter
subclass of: Restriction
  on property: bearer of
  some values from: nursing home function
definition: A facility that is run by a nursing home organization and is the bearer of a nursing home function.
definition editor: Amanda Hicks

residential health care facility
type: Class
subclass of: community living health care facility
definition: A community living health care facility that provides health care services in a home-like setting
definition editor: Amanda Hicks
definition editor: William Hogan

overnight dialysis facility
type: Class
subclass of: health care facility
subclass of: Restriction
  on property: contains process
  some values from: dialysis
subclass of: Restriction
  on property: contains process
  some values from: skilled nursing encounter
subclass of: Restriction
  on property: bearer of
  some values from: overnight dialysis function
definition editor: Amanda Hicks

outpatient clinic facility
type: Class
subclass of: health care facility
subclass of: Restriction
  on property: bearer of
  some values from: outpatient clinic function
definition: A health care facility that bears a function to provide low intensity healthcare services to patients on a short-term basis, with patients leaving on the same date as arriving (i.e., without them staying overnight)
definition editor: Amanda Hicks
definition editor: Emma Norris
definition editor: William Hogan
definition source: Human Behaviour Change Project
comment: Broadened from treatment to healthcare services generally. "Low intensity" is not defined at the moment, but is needed to differentiate from same-day surgery centers or observation stays in hospitals that last <24 hours. The idea is that few invasive procedures are performed, and the ones that are invasive are not typically much worse than a blood draw. Maybe bone marrow biopsy is as aggressive as it gets. I wonder if hematologists do that on an outpatient basis.

physician office facility
type: Class
subclass of: health care facility
subclass of: Restriction
  on property: bearer of
  some values from: physician office function
definition editor: Amanda Hicks

ambulatory surgery facility
type: Class
subclass of: health care facility
subclass of: Restriction
  on property: contains process
  some values from: surgery
subclass of: Restriction
  on property: bearer of
  some values from: ambulatory surgery function
definition editor: Amanda Hicks

urgent care facility
type: Class
subclass of: health care facility
subclass of: Restriction
  on property: bearer of
  some values from: urgent care function
definition editor: Amanda Hicks

emergency department facility
type: Class
subclass of: health care facility
subclass of: Restriction
  on property: contains process
  some values from: acute care encounter
subclass of: Restriction
  on property: bearer of
  some values from: emergency department function
definition: A health care facility that bears a function to provide emergency healthcare services and the acute care of patients who present without prior appointment, having arrived either by their own means or by ambulance
definition editor: Amanda Hicks
definition editor: Emma Norris
definition editor: William Hogan
definition source: Adapted from Human Behaviour Change Project

urgent care function
type: Class
subclass of: function

ambulatory surgery function
type: Class
subclass of: function
subclass of: Restriction
  on property: realized in
  some values from: surgery
definition editor: Amanda Hicks

hospice function
type: Class
subclass of: palliative function

emergency department function
type: Class
subclass of: function

physician office function
type: Class
subclass of: function

outpatient clinic function
type: Class
subclass of: function

overnight dialysis function
type: Class
subclass of: function
subclass of: Restriction
  on property: realized in
  some values from: dialysis

rehabilitation function
type: Class
subclass of: function

skilled nursing function
type: Class
subclass of: function

obsolete residential function
type: Class
subclass of: ObsoleteClass
term replaced by: residence function (OMRSE:00000075)
deprecated: true

nursing home function
type: Class
subclass of: function

patient discharge
type: Class
subclass of: deontic document act
subclass of: Class
  intersection of: Restriction
    on property: has_specified_output
    some values from: Class
      intersection of: document
      intersection of: Restriction
        on property: has part
        some values from: plan specification
  intersection of: Restriction
    on property: process has causal agent
    some values from: Class
      intersection of: Homo sapiens
      intersection of: Restriction
        on property: bearer of
        some values from: health care provider role
subclass of: Restriction
  on property: ends
  some values from: inpatient encounter
subclass of: Restriction
  on property:
    inverse of: before
  some values from: admission process
definition: A deontic document act that concludes an inpatient encounter.
definition editor: Amanda Hicks
alternative term: discharge process

obsolete hispanic or latino identity datum
type: Class
subclass of: ObsoleteClass
definition: An OMB ethnic identity datum that indicates the person identified is of Cuban, Mexican, Puerto Rican, South or Central American, or other Spanish culture or origin regardless of race.
definition editor: Amanda Hicks
term replaced by: OMB Hispanic or Latino identity information content entity
deprecated: true

obsolete not hispanic or latino identity datum
type: Class
subclass of: ObsoleteClass
definition: An OMB ethnic identity datum that indicates the person identified is not of Cuban, Mexican, Puerto Rican, South or Central American, or other Spanish culture or origin regardless of race.
definition editor: Amanda Hicks
term replaced by: OMB not Hispanic or Latino identity information content entity
deprecated: true

US physician assistant role
type: Class
subclass of: institutional health care provider role
definition: A human health care provider role that inheres in a human being that is created by state licensing and that is realized by taking patient histories, performing physical exams, diagnosing illnesses, developing treatment plans, ordering lab tests, prescribing medications, counselling and educating patients, suturing wounds, and assisting in surgery under the supervision of a physician or a surgeon.

anesthesiologist role
type: Class
subclass of: physician role
definition: A physician role that inheres a human being and, if it is realized, is realized either by administering medication for the temporary general or local suppression of sensory or motor nerve function during some health care encounter or by making decisions independently of a supervising physician regarding the adminstration of such medication.

obsolete OMB racial identification process
type: Class
subclass of: ObsoleteClass
deprecated: true

obsolete identity datum
type: Class
subclass of: ObsoleteClass
definition: An identity datum is an information content entity that is the output of some identitification process and is intended to be a truthful statement about a person's social identity. Unlike data items they are not necessilary contributed or acquired by a reliable method.
term replaced by: social identity information content entity
creator: Amanda Hicks
deprecated: true

obsolete gender identity datum
type: Class
subclass of: ObsoleteClass
definition: A gender identity is an information content entity that is the output of some gender identitification process and is intended to be a truthful statement about a person's subjective sense of their gender. Unlike data items they are not necessilary contributed or acquired by a reliable method.
term replaced by: gender identity information content entity
creator: Amanda Hicks
deprecated: true

identification process
type: Class
subclass of: social act
creator: Amanda Hicks

gender identification process
type: Class
subclass of: Class
  intersection of: identification process
  intersection of: Restriction
    on property: has_specified_output
    some values from: Restriction
      on property: part of
      some values from: obsolete gender identity datum

obsolete female gender identity datum
type: Class
subclass of: ObsoleteClass
definition: a gender identity datum resulting from a gender identification process in which ‘female’ is selected based on the participant's subjective sense of gender
definition editor: Amanda Hicks
term replaced by: female gender identity information content entity
deprecated: true

surgeon role
type: Class
subclass of: physician role
subclass of: Restriction
  on property: realized in
  some values from: surgery
definition: A physician role that, if realized, is realized by its bearer using operative manual and instrumental techniques to investigate, treat, or modify a patient's anatomical or physiological state for health, functional, or aesthetic purposes.
definition editor: Matthew Diller
contributor: William R. Hogan

neurosurgeon role
type: Class
subclass of: surgeon role
definition: A surgeon role realized by its bearer using performing neurosurgery.

obsolete male gender identity datum
type: Class
subclass of: ObsoleteClass
definition: a gender identity datum resulting from a gender identification process in which ‘male’ is selected based on the participant's subjective sense of gender
definition editor: Amanda Hicks
term replaced by: male gender identity information content entity
deprecated: true

human traveling information
type: Class
equivalent class: Class
  intersection of: information content entity
  intersection of: Restriction
    on property: is about
    some values from: human travel
subclass of: information content entity
subclass of: Restriction
  on property: is about
  some values from: human travel
definition: An information content entity that is about human travel.
definition source: https://github.com/ufbmi/OMRSE/issues/79
contributor: Jie Zheng
creator: Amanda Hicks

household identifier
type: Class
equivalent class: Class
  intersection of: symbol
  intersection of: Restriction
    on property: denotes
    some values from: household
subclass of: symbol
subclass of: Restriction
  on property: denotes
  some values from: household
contributor: A symbol that denotes a specific household
contributor: Jie Zheng
creator: Amanda Hicks

family identifier
type: Class
equivalent class: Class
  intersection of: symbol
  intersection of: Restriction
    on property: denotes
    some values from: family
subclass of: symbol
subclass of: Restriction
  on property: denotes
  some values from: family
definition: A symbol that denotes a family.
contributor: Jie Zheng
creator: Amanda Hicks

obsolete self-identity data item
type: Class
subclass of: ObsoleteClass
definition: an identity datum that has been asserted by the person whom it is about
definition editor: Amanda Hicks
deprecated: true

employment process
type: Class
subclass of: planned process
subclass of: Class
  intersection of: Restriction
    on property: realizes
    some values from: job role
  intersection of: Restriction
    on property: realizes
    some values from: employer role
definition: A planned process in which the bearer of an employer role provides wages or salary to the bearer of an employee roll in fullfillment of the arrangements specified in some declaration

pediatric surgeon role
type: Class
subclass of: surgeon role
definition: A surgeon role that, if realized, is realized by its bearer by performing procedures on a child.
definition editor: Amanda Hicks

adult foster home facility
type: Class
subclass of: community living health care facility
subclass of: Restriction
  on property: bearer of
  some values from: adult foster home function
definition: a facility that is run by an adult foster home organization and is the bearer of an adult foster home organization
definition editor: Amanda Hicks

adult foster home function
type: Class
subclass of: function

community living health care facility
type: Class
subclass of: health care facility
subclass of: Restriction
  on property: contains process
  some values from: assistance with activities of daily living care encounter
subclass of: Restriction
  on property: contains process
  some values from: assistance with instrumental activities of daily living encounter
subclass of: Restriction
  on property: bearer of
  some values from: residence function
definition: a health care facility that also bears a residence function and thus one in which the patients are also residents of the facility

registered nurse role
type: Class
subclass of: nurse role

skilled nursing encounter
type: Class
subclass of: health care encounter
subclass of: Restriction
  on property: realizes
  some values from: registered nurse role

assistive care encounter
type: Class
subclass of: planned process
definition: They include assistance with activities of daily living, assistance with instrumental activities of daily living, medication assistance, and health support http://ahca.myflorida.com/Medicaid/acs/index.shtml
definition editor: Amanda Hicks

assistance with activities of daily living care encounter
type: Class
subclass of: assistive care encounter

assistance with instrumental activities of daily living encounter
type: Class
subclass of: assistive care encounter

medication assistance care encounter
type: Class
subclass of: assistive care encounter

assisted living facility
type: Class
subclass of: community living health care facility
definition: A facility that is run by an assisted living facility organization and is the bearer of an assisted living facility function.

assisted living function
type: Class
subclass of: function

post-acute health care encounter
type: Class
subclass of: health care encounter
subclass of: Restriction
  on property: occurs in
  some values from: community living health care facility
disjoint with: acute care encounter
definition: temporally located after some acute care encounter Somehow involves skilled nursing encounters

acute care encounter
type: Class
subclass of: health care encounter

leaving a health care facility after receiving care
type: Class
subclass of: process
subclass of: Restriction
  on property: has participant
  some values from: Restriction
    on property: bearer of
    some values from: patient role
subclass of: Restriction
  on property: immediately preceded by
  some values from: health care encounter
definition: A process (1) where the active participant, who at the beginning of the process is located in a healthcare facility, exits the facility and no longer stands in a "located in" relationship to the facility and (2) is immediately preceded by a healthcare encounter in which the active participant also participated.
definition editor: William R. Hogan

obsolete medical advice
type: Class
subclass of: ObsoleteClass
deprecated: true

response to a question asking process
type: Class
subclass of: information content entity
subclass of: Restriction
  on property: participates in
  some values from: obsolete questions asking process
comment: Note that not all responses to a question asking process are answers. For example, a refusal to answer is not an answer. A refusal to answer is also not a specified output of the question asking process since it does not acheive the objective of asking the question, which is to get an answer.

home health care organization
type: Class
subclass of: organization
subclass of: Restriction
  on property: bearer of
  some values from: function

home health care function
type: Class
subclass of: health care function
subclass of: Restriction
  on property: realized in
  some values from: assistance with activities of daily living care encounter
subclass of: Restriction
  on property: realized in
  some values from: assistance with instrumental activities of daily living encounter
subclass of: Restriction
  on property: realized in
  some values from: home health care encounter

home health care encounter
type: Class
subclass of: health care encounter
subclass of: Restriction
  on property: occurs in
  some values from: housing unit

obsolete questions asking process
type: Class
subclass of: ObsoleteClass
term replaced by: information content entity-request process
deprecated: true

palliative function
type: Class
subclass of: health care function
subclass of: Restriction
  on property: realized in
  some values from: assistance with activities of daily living care encounter
subclass of: Restriction
  on property: realized in
  some values from: assistance with instrumental activities of daily living encounter
subclass of: Restriction
  on property: realized in
  some values from: palliative care encounter

palliative care encounter
type: Class
subclass of: health care encounter

hospice organization
type: Class
subclass of: organization
subclass of: Restriction
  on property: bearer of
  some values from: hospice function

health care function
type: Class
equivalent class: Class
  intersection of: function
  intersection of: Restriction
    on property: realized in
    some values from: health care encounter
subclass of: function
subclass of: Restriction
  on property: realized in
  some values from: health care encounter

obsolete material information bearer of question text plus answer set
type: Class
subclass of: ObsoleteClass
deprecated: true

refusal to answer datum
type: Class
subclass of: response to a question asking process

response to an identity question asking process
type: Class
subclass of: response to a question asking process

obsolete identity question asking process
type: Class
subclass of: ObsoleteClass
deprecated: true

obsolete ethnic identity question asking process
type: Class
subclass of: ObsoleteClass
term replaced by: information content entity request about ethnic identity
deprecated: true

obsolete race identity question asking process
type: Class
subclass of: ObsoleteClass
term replaced by: information content entity request about racial identity
deprecated: true

answer to identity question
type: Class
subclass of: response to an identity question asking process

obsolete American Indian or Alaska Native identity datum
type: Class
subclass of: ObsoleteClass
definition: A racial identity that is the output of a racial identification process that uses OMB terminology for race or terminology that is mapped the OMB race terms and that indicates that the subject of the identity has origins in any of the original peoples of North and South America (including Central America), and maintains tribal affiliation or community attachment.
definition editor: Amanda Hicks
term replaced by: OMB American Indian or Alaska Native identity information content entity
deprecated: true

obsolete Asian identity datum
type: Class
subclass of: ObsoleteClass
definition: A racial identity that is the output of a racial identification process that uses OMB terminology for race or terminology that is mapped the OMB race terms and that indicates that the subject of the identity has origins in any of the original peoples of the Far East, Southeast Asia, or the Indian subcontinent.
definition editor: Amanda Hicks
term replaced by: OMB Asian identity information content entity
deprecated: true

obsolete black or African American identity datum
type: Class
subclass of: ObsoleteClass
definition: A racial identity that is the output of a racial identification process that uses OMB terminology for race or terminology that is mapped the OMB race terms and that indicates that the subject of the identity has origins in any of the black racial groups of Africa.
definition editor: Amanda Hicks
term replaced by: OMB black or African American identity information content entity
deprecated: true

obsolete Native Hawaiian or other Pacific Islander identity datum
type: Class
subclass of: ObsoleteClass
definition: A racial identity that is the output of a racial identification process that uses OMB terminology for race or terminology that is mapped the OMB race terms and that indicates that the subject of the identity has origins in any of the original peoples of Hawaii, Guam, Samoa, or other Pacific Islands.
definition editor: Amanda Hicks
term replaced by: OMB Native Hawaiian or other Pacific Islander identity information content entity
deprecated: true

obsolete white identity datum
type: Class
subclass of: ObsoleteClass
definition: A racial identity that is the output of a racial identification process that uses OMB terminology for race or terminology that is mapped the OMB race terms and that indicates that the subject of the identity has origins in any of the original peoples of Europe, the Middle East, or North Africa.
definition editor: Amanda Hicks
term replaced by: OMB white identity information content entity
deprecated: true

obsolete OMB racial identity datum
type: Class
subclass of: ObsoleteClass
definition: A racial identity that is the output of a racial identification process that uses OMB terminology for race or terminology that is mapped the OMB race terms.
definition editor: Amanda Hicks
term replaced by: OMB racial identity information content entity
deprecated: true

heavy smoker role
type: Class
subclass of: smoker role
definition: A role that inheres in an organism and is realized by habitually smoking 10 or more tobacco cigerettes a day or the equivalent in other tobacco products.

light smoker role
type: Class
subclass of: smoker role
definition: A role that inheres in an organism and is realized by habitually smoking 1>10 tobacco cigerettes a day or the equivalent in other tobacco products.

answer set
type: Class
subclass of: information content entity

question text
type: Class
subclass of: information content entity

option as member of some answer set
type: Class
subclass of: information content entity
subclass of: Restriction
  on property: member of
  some values from: answer set

residential facility
type: Class
subclass of: facility
editor preferred term: residential facility
definition: A facility that has at least one housing unit as part in which a person or persons live
definition editor: Emma Norris
definition editor: William Hogan
definition source: Modified version of definition provided by Human Behaviour Change Project

obsolete communication
type: Class
subclass of: ObsoleteClass
definition: A process in which some participant shares some information content entity about some state of that participant with some other participant.
definition editor: S. Clint Dowland
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: William R. Hogan
comment: The term 'participant' in the definition need not refer to a human agent.
deprecated: true

obsolete linguistic competence
type: Class
subclass of: ObsoleteClass
definition: A disposition inhering in a material entity that, if realized, is realized by that material entity’s communicating via some linguistic concretization.
definition editor: S. Clint Dowland
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: William R. Hogan
deprecated: true

obsolete language
type: Class
subclass of: ObsoleteClass
definition: A disposition inhering in a linguistic community that (i) is a maximal aggregate of communicatively compatible linguistic competences, and (ii) if realized, is realized by any and all realizations of those linguistic competences.
definition editor: William R. Hogan
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: S. Clint Dowland
deprecated: true

linguistic community
type: Class
subclass of: material entity
subclass of: Restriction
  on property: bearer of
  some values from: language
subclass of: Restriction
  on property: has member
  all values from: Class
    intersection of: material entity
    intersection of: Restriction
      on property: bearer of
      some values from: linguistic competence
definition: A maximal aggregate of material entities such that each member bears a linguistic competence for the same language.
definition editor: Matthew Diller
contributor: Mathias Brochhausen
contributor: S. Clint Dowland
contributor: William R. Hogan

obsolete expression of preferred language
type: Class
subclass of: ObsoleteClass
definition: A communication in which some participant states a preference for some communicative process to be in a certain language, and that has a concretization of a preferred language information content entity as its specified output.
definition editor: S. Clint Dowland
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: William R. Hogan
deprecated: true

obsolete preferred language information content entity
type: Class
subclass of: ObsoleteClass
definition: An information content entity that (i) is about some person, some language, and some linguistic competence; and (ii) conveys the language with which that person prefers to communicate within some given context.
definition editor: Mathias Brochhausen
contributor: Matthew Diller
contributor: S. Clint Dowland
contributor: William R. Hogan
deprecated: true

information content entity-request process
type: Class
subclass of: communication
definition: a communication in which some participant requests of some other participant an information content entity about some portion of reality
definition editor: S. Clint Dowland
comment: As with the parent class, 'participant' in the definition need not refer to a human agent.
comment: The medium and grammatical form are irrelevant. For example, the request may be written or spoken, and while it may be in the form of a question, it need not be.

information content entity request about ethnic identity
type: Class
subclass of: information content entity-request process
definition: an information content entity-request process in which some participant requests of some other participant an information content entity that indicates the ethnic identity of that other participant
definition editor: S. Clint Dowland

information content entity request about racial identity
type: Class
subclass of: information content entity-request process
definition: an information content entity-request process in which some participant requests of some other participant an information content entity that indicates the racial identity of that other participant
definition editor: S. Clint Dowland

admission process
type: Class
subclass of: deontic document act
subclass of: Restriction
  on property: before
  some values from: patient discharge
subclass of: Restriction
  on property: starts
  some values from: inpatient encounter
definition: A deontic document act in which a patient is registered with a health care provider for the purpose of receiving care in an inpatient encounter.
definition editor: Amanda Hicks

cancer summary staging
type: Class
subclass of: planned process
editor preferred term: cancer summary staging
example of usage: The cancer summary staging performed on patient John Doe's clinical picture.
definition: A planned process of determining the extent to which a cancer disease has developed by growing and spreading throughout an organism.
definition editor: Mathias Brochhausen
alternative term: tumor summary staging

cancer summary staging code
type: Class
subclass of: Class
  intersection of: information content entity
  intersection of: Restriction
    on property: is specified output of
    some values from: cancer summary staging
editor preferred term: cancer summary staging code
example of usage: The cancer summary staging code that is the outcome of the cancer summary staging performed on patient John Doe's clinical picture.
definition: An information content entity that is the specified output of cancer summary staging.
definition editor: Mathias Brochhausen
alternative term: tumor summary staging code

social identity information content entity
type: Class
subclass of: information content entity
definition: An information content entity that is intended to be a truthful statement about some person and whether that person identifies as some particular aspect of social identity—such as a gender, an ethnicity, a race, or a sexual orientation—where the sense of identifying may correspond to either (i) an aspect of one’s cognitive representation of oneself, (ii) how one prefers to be regarded by others within some social context, or (iii) how one chooses to present oneself to others within some social context.
definition editor: S. Clint Dowland
contributor: Amanda Hicks
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan
comment: We include (i)-(iii) to acknowledge that there are different senses of "identify" that are relevant here, and that we may not always be sure which sense the person concretizing the social identity information content entity intended. While (i) concerns how one thinks of oneself, (ii) and (iii) are more focused on one's interactions with others. Importantly, some choose not to share with others how they identify in the sense of (i). For example, one can consider oneself to be some certain gender without either wanting others to know or choosing to present oneself in a corresponding way. We distinguish (ii) and (iii) because one can prefer to be regarded some certain way without attempting to present oneself in any corresponding way.

ethnic identity information content entity
type: Class
subclass of: social identity information content entity
definition: A social identity information content entity that is about whether some person identifies as some ethnicity.
definition editor: S. Clint Dowland
contributor: Amanda Hicks
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan
comment: Ethnicity is separate from but related to racial identity. It refers more to identifying with a particular culture than with individuals similar in physical appearance. It includes things like Hispanic ethnicity (which spans many nations) and national cultural identities like Irish and ethnic groups within nations such as Catalan and Armenian.

obsolete OMB ethnic identity information content entity
type: Class
subclass of: ObsoleteClass
definition: An ethnic identity information content entity that uses OMB terminology for ethnicity or terminology that is strictly mapped onto the OMB ethnicity terms.
definition editor: S. Clint Dowland
contributor: Amanda Hicks
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan
comment: OMB dichotomizes ethnicity into Hispanic or Latino and Not Hispanic or Latino, and ignores all other forms of ethnicity.
deprecated: true

obsolete OMB Hispanic or Latino identity information content entity
type: Class
subclass of: ObsoleteClass
definition: An OMB ethnic identity information content entity that is about some person's identifying as Hispanic or Latino, which are intended to mean being of Cuban, Mexican, Puerto Rican, South or Central American, or other Spanish culture or origin, regardless of race.
definition editor: S. Clint Dowland
contributor: Amanda Hicks
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan
comment: It comprehends people of Portuguese culture or origin in Brazil.
deprecated: true

obsolete OMB not Hispanic or Latino identity information content entity
type: Class
subclass of: ObsoleteClass
definition: An OMB ethnic identity information content entity that is about some person's identifying as neither Hispanic nor Latino, which are intended to mean being of Cuban, Mexican, Puerto Rican, South or Central American, or other Spanish culture or origin, regardless of race.
definition editor: S. Clint Dowland
contributor: Amanda Hicks
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan
deprecated: true

gender identity information content entity
type: Class
subclass of: social identity information content entity
definition: A social identity information content entity that is about whether some person identifies as some gender.
definition editor: S. Clint Dowland
contributor: Amanda Hicks
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan

female gender identity information content entity
type: Class
subclass of: gender identity information content entity
definition: A gender identity information content entity that is about some person's identifying as female in gender.
definition editor: S. Clint Dowland
contributor: Amanda Hicks
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan

male gender identity information content entity
type: Class
subclass of: gender identity information content entity
definition: A gender identity information content entity that is about some person's identifying as male in gender.
definition editor: S. Clint Dowland
contributor: Amanda Hicks
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan

non-binary identity information content entity
type: Class
subclass of: gender identity information content entity
definition: A gender identity information content entity that is about some person's identifying as non-binary in gender.
definition editor: S. Clint Dowland
contributor: Amanda Hicks
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan

racial identity information content entity
type: Class
subclass of: social identity information content entity
definition: A social identity information content entity that is about whether some person identifies as some race.
definition editor: S. Clint Dowland
contributor: Amanda Hicks
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan

obsolete OMB racial identity information content entity
type: Class
subclass of: ObsoleteClass
definition: A racial identity information content entity that uses OMB terminology and definitions for race or terminology that is strictly mapped onto the OMB race terms.
definition editor: S. Clint Dowland
contributor: Amanda Hicks
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan
deprecated: true

obsolete OMB American Indian or Alaska Native identity information content entity
type: Class
subclass of: ObsoleteClass
definition: An OMB racial identity information content entity that is about some person's identifying as American Indian or Alaska Native, which is intended to mean having origins in any of the original peoples of North and South America (including Central America), and maintains tribal affiliation or community attachment.
definition editor: S. Clint Dowland
contributor: Amanda Hicks
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan
comment: This definition corresponds to that used by OMB. It is worth noting that the OMB definition from which this one is derived is problematic, in that it implies that one's race cannot be Native American or Alaskan Native unless one maintains tribal affiliations or community attachment.
deprecated: true

obsolete OMB Asian identity information content entity
type: Class
subclass of: ObsoleteClass
definition: An OMB racial identity information content entity that is about some person's identifying as Asian, which is intended to mean having origins in any of the original peoples of the Far East, Southeast Asia, or the Indian subcontinent.
definition editor: S. Clint Dowland
contributor: Amanda Hicks
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan
deprecated: true

obsolete OMB black or African American identity information content entity
type: Class
subclass of: ObsoleteClass
definition: An OMB racial identity information content entity that is about some person's identifying as black or African American which is intended to mean having origins in any of the black racial groups of Africa.
definition editor: S. Clint Dowland
contributor: Amanda Hicks
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan
deprecated: true

obsolete OMB Native Hawaiian or other Pacific Islander identity information content entity
type: Class
subclass of: ObsoleteClass
definition: An OMB racial identity information content entity that is about some person's identifying as Native Hawaiian or other Pacific Islander, which is intended to mean having origins in any of the original peoples of Hawaii, Guam, Samoa, or other Pacific Islands.
definition editor: S. Clint Dowland
contributor: Amanda Hicks
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan
deprecated: true

obsolete OMB white identity information content entity
type: Class
subclass of: ObsoleteClass
definition: An OMB racial identity information content entity that is about some person's identifying as white which is intended to mean having origins in any of the original peoples of Europe, the Middle East, or North Africa.
definition editor: S. Clint Dowland
contributor: Amanda Hicks
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan
deprecated: true

sexual orientation identity information content entity
type: Class
subclass of: social identity information content entity
definition: A social identity information content entity that is about whether some person identifies as having some sexual orientation.
contributor: Amanda Hicks
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan

residence ZIP code information content entity
type: Class
subclass of: information content entity
definition: An information content entity that is about some geographical region, in which a postal delivery route denoted by a particular ZIP code is realized, and that is the specified output of a disclosure of residence.
definition editor: Matthew Diller
contributor: Hansi Zhang
contributor: Mathias Brochhausen
contributor: S. Clint Dowland
contributor: Sarah Bost
contributor: William R. Hogan

debt obligation
type: Class
subclass of: directive information entity
editor preferred term: debt obligation
example of usage: Three Arrows Capital declared bankruptcy on July 1, 2022 after defaulting on a $665 million debt obligation owed to Voyager Digital.
definition: A directive information entity that prescribes that something will be transferred from some human or organization that is the bearer of a duty holder role to another human or organization that is the bearer of a claimant role.
definition editor: Matthew Diller
contributor: William R. Hogan

disclosure of residence
type: Class
subclass of: social act
definition: A social act that creates an information content entity that is about some geographical region in which a human being dwells.
definition editor: Matthew Diller
contributor: Hansi Zhang
contributor: Mathias Brochhausen
contributor: S. Clint Dowland
contributor: Sarah Bost
contributor: William R. Hogan

electronic health record data set
type: Class
subclass of: data set
definition: A data set whose members are obtained from one or more electronic health records.
definition editor: Matthew Diller
alternative term: EHR data set
contributor: Alan Ruttenberg
contributor: Mathias Brocchausen
contributor: S. Clint Dowland
contributor: Sarah Bost
contributor: William R. Hogan

health care claim data set
type: Class
subclass of: data set
definition: A data set whose members are the specified output of some process of adjudicating health care insurance claims (and whose inputs are at least partly some members of a health care billing data set).
definition editor: William R. Hogan
contributor: Alan Ruttenberg
contributor: Mathias Brocchausen
contributor: Matthew Diller
contributor: S. Clint Dowland
contributor: Sarah Bost
comment: It covers prescription claims because pharmacies bill insurance companies for patients’ prescriptions via submitting insurance claims.
comment: The insurance claim is submitted to the insurance company by either the patient or the provider. It is not necessarily always the provider, although in the United States, it typically is.
comment: The outcome of the adjudication of a claim in the claims dataset could be favorable or unfavorable for the healthcare provider, the patient, or both. The idea is just that they’ve been adjudicated, one way or the other (or anything in between if that’s a possibility).
comment: The reason we say billing data are only part of the input is because we are not conflating the insurance claim with the bill. It is our understanding that the provider’s bill of services is either part of the claim or “attached” to it in some manner, but doesn’t constitute the entire claim itself.
comment: The sources of these data are held by insurers or other health plan providers.

health care billing data set
type: Class
subclass of: data set
definition: A data set whose members are obtained from billing-related data sources that (i) are generated by a health care organization as a result of internal administrative processes, and (ii) are about services rendered or materials used during some health care encounter.
definition editor: S. Clint Dowland
contributor: Alan Ruttenberg
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan

health care administrative process
type: Class
subclass of: planned process
example of usage: Recording data in an EHR. Financial tasks for a healthcare organization. Scheduling shifts for health care workers.
definition: A planned process (i) that is neither a health care process nor an ancillary health care process, and (ii) in which some employee of a health care organization manages, or helps to manage, the performance of tasks that realize the functions of that organization.
definition editor: Matthew Diller
contributor: S. Clint Dowland

principal diagnosis-assignment process
type: Class
subclass of: health care administrative process
definition: A health care administrative process that has as input a diagnosis, and has as output a value indicating that diagnosis is about the condition that prompts the admission process that starts the encounter during which the diagnostic process that outputs that diagnosis begins.
definition editor: S. Clint Dowland
contributor: Matthew Diller

secondary diagnosis-assignment process
type: Class
subclass of: health care administrative process
definition: A health care administrative process that has as input a diagnosis, and has as output a value indicating that diagnosis is about an underlying condition that is distinct from the condition that prompts the admission process that starts the encounter during which the diagnostic process that outputs that diagnosis begins.
definition editor: S. Clint Dowland
contributor: Matthew Diller

county smoking survey plan specification
type: Class
subclass of: survey plan specification
example of usage: The Alachua county smoking survey plan specification.
definition: A survey plan specification that aims to collect information about the smoking behavior or lack thereof of a population on a county level. Concretization of a smoking survey plan that is stratified by county.
definition editor: Mathias Brochhausen
contributor: Hansi Zhang
contributor: Jiang Bian
contributor: Matthew Diller
contributor: S. Clint Dowland
contributor: Sarah Bost
contributor: William R. Hogan

county smoking survey execution
type: Class
equivalent class: Restriction
  on property: realizes
  some values from: Restriction
    on property: concretizes
    some values from: county smoking survey plan specification
subclass of: survey execution
subclass of: Restriction
  on property: realizes
  some values from: Restriction
    on property: concretizes
    some values from: county smoking survey plan specification
example of usage: The Alachua county smoking survey execution.
definition: A survey execution that realizes the concretization of a smoking survey plan specification that is stratified by county.
definition editor: Mathias Brochhausen
contributor: Hansi Zhang
contributor: Jiang Bian
contributor: Matthew Diller
contributor: S. Clint Dowland
contributor: Sarah Bost
contributor: William R. Hogan

county smoking survey data
type: Class
equivalent class: Restriction
  on property: is specified output of
  some values from: county smoking survey execution
subclass of: survey data
subclass of: Restriction
  on property: is specified output of
  some values from: county smoking survey execution
example of usage: The Alachua county smoking survey data.
definition: Survey data that is the specified output of a county smoking survey execution.
definition editor: Mathias Brochhausen
contributor: Hansi Zhang
contributor: Jiang Bian
contributor: Matthew Diller
contributor: S. Clint Dowland
contributor: Sarah Bost
contributor: William R. Hogan

smoking rate calculation
type: Class
subclass of: data transformation
example of usage: Calculating the Alachua County smoking rate from Alachua County smoking data.
definition: A data transformation that has data about the smoking status of a population as its specified input and a percentage or ratio of smokers in that population as a specified output.
definition editor: Mathias Brochhausen

county smoking rate data
type: Class
subclass of: data item
example of usage: The Alachua County smoking rate.
definition: A data item that is the specified output of a smoking rate calculation that has data about smoking behavior or lack there of on a county level.
definition editor: Mathias Brochhausen

money
type: Class
subclass of: debt obligation
editor preferred term: money
example of usage: Todd does not have enough money to buy more plants at the horticultural club's poinsettia sale.
definition: A debt obligation between two parties that has part a scalar value specification and whose concretizations indicate that their bearers can be used in a financial transaction or payment of debt, or as a measure of the value of some entity in a financial valuation process or prospective financial valuation process.
definition editor: Matthew Diller
contributor: William R. Hogan

currency
type: Class
subclass of: material entity
editor preferred term: currency
example of usage: US currency is an accepted form of legal tender, not just in the United States, but in many countries around the world, such as El Salvador.
definition: A material entity that is the bearer of a concretization of money and is created by some governmental organization or on behalf of some governmental organization that has authorized its creation.
definition editor: Matthew Diller
contributor: William R. Hogan

exchange of ownership
type: Class
subclass of: planned process
editor preferred term: exchange of ownership
example of usage: Tom exchanged ownership of his computer for Tina's scooter.
definition: A planned process whereby one agent (or active participant) or a group of agents transfer ownership of some property to another agent (or active participant) or group of agents in the process, who in return transfer ownership of some their property to the first agent (or active participant).
definition editor: Matthew Diller
alternative term: barter
contributor: William R. Hogan

financial transaction
type: Class
subclass of: planned process
editor preferred term: financial transaction
example of usage: Apple acquired semiconductors from Samsung in a financial transaction yesterday.
definition: A planned process whereby one participant partly or completely fulfills an obligation to another participant by transferring ownership of some other debt obligation, which is typically money.
definition editor: Matthew Diller
alternative term: monetary transaction
contributor: William R. Hogan

payment of debt
type: Class
subclass of: planned process
editor preferred term: payment of debt
example of usage: I made a debt payment with my credit card company yesterday and no longer owe them money.
definition: A planned process whereby ownership of some entity of value is transferred by one participant to another to fulfill some obligation, on their behalf, after some service is performed or the ownership of some entity is exchanged.
definition editor: Matthew Diller
contributor: William R. Hogan

financial valuation process
type: Class
subclass of: planned process
editor preferred term: financial valuation process
example of usage: The financial valuation of Ravi's car today determined that the car is worth $2000.
definition: A planned process that has as specified output some scalar measurement datum that is about an entity—such as a material good or a service—and is measured in terms of the quantity of some other material entity.
definition editor: Matthew Diller
contributor: William R. Hogan

prospective financial valuation process
type: Class
subclass of: planned process
editor preferred term: prospective financial valuation process
example of usage: The prospective valuation of my company's stock indicates strong optimism for our financial growth over the next few years.
definition: A planned process that has as specified output some predicted value that is about an entity—such as a material good or a service—and is measured in terms of the quantity of some material entity at some point in the future.
definition editor: Matthew Diller
contributor: William R. Hogan

intimate partnership
type: Class
subclass of: relational quality
definition: Relational quality inhering in persons by virtue of being each other’s spouse, boyfriend/girlfriend, dating partner, or ongoing sexual partner.
definition editor: Matthew Diller
contributor: S. Clint Dowland

abusive behavior
type: Class
subclass of: behavior
definition: Behavior that is cruel, violent, demeaning, or invasive.
definition editor: Matthew Diller
contributor: S. Clint Dowland

psychologically abusive behavior
type: Class
subclass of: abusive behavior
definition: Abusive behavior in which the aggressor does or attempts to do the following: mentally or emotionally harm or exert control over another.
definition editor: Matthew Diller
contributor: S. Clint Dowland

physically abusive behavior
type: Class
subclass of: abusive behavior
definition: Abusive behavior in which the aggressor does or attempts to do the following: harm, restrain, or coerce another through physical force.
definition editor: Matthew Diller
contributor: S. Clint Dowland

sexually abusive behavior
type: Class
subclass of: abusive behavior
definition: Abusive behavior in which the aggressor does or attempts to do the following: force or coerce another to participate in a sexual act to which the latter has not freely given consent.
definition editor: Matthew Diller
contributor: S. Clint Dowland

birth attendant role
type: Class
subclass of: institutional health care provider role
definition: A health care provider role that is realized in maintaining the health of a human being during their pregnancy and both them and the neonate during labor, delivery, and postpartum.
definition editor: Matthew Diller
alternative term: skilled birth attendant role
contributor: https://orcid.org/0000-0001-6595-0902

linguistic competence information content entity
type: Class
subclass of: information content entity
subclass of: Restriction
  on property: is about
  some values from: Restriction
    on property: bearer of
    some values from: Class
      intersection of: linguistic competence
      intersection of: Restriction
        on property: has member
        some values from: language
definition: An information content entity that conveys that a particular person has a linguistic competence for a particular language
definition editor: Matthew Diller
contributor: Barry Smith
contributor: Jobst Landgrebe
contributor: S. Clint Dowland
contributor: William R. Hogan

primary language information content entity
type: Class
subclass of: linguistic competence information content entity
definition: A linguistic competence information content entity that conveys the language is the one for which the person has their most proficient linguistic competence.
definition editor: Matthew Diller
contributor: Barry Smith
contributor: Jobst Landgrebe
contributor: S. Clint Dowland
contributor: William R. Hogan

language-at-home information content entity
type: Class
subclass of: linguistic competence information content entity
subclass of: Restriction
  on property: is about
  some values from: Class
    intersection of: linguistic competence
    intersection of: Restriction
      on property: realized in
      some values from: Restriction
        on property: occurs in
        some values from: Restriction
definition: A linguistic competence information content entity that conveys the person uses the language at home.
definition editor: Matthew Diller
contributor: Barry Smith
contributor: Jobst Landgrebe
contributor: S. Clint Dowland
contributor: William R. Hogan

religious gathering
type: Class
subclass of: social act
definition: A social act or aggregate of social acts that include some worship, prayer, or proselytizing.
definition editor: Matthew Diller
contributor: William R. Hogan

hospital bed capacity data item
type: Class
subclass of: count
definition: A count of the number of patients that some hospital facility has the capacity for.
definition editor: Matthew Diller
contributor: William R. Hogan

proportion of population in an elementary occupation
type: Class
subclass of: data item
definition: A data item that is the output of some data transformation that takes as input the number of individuals in a population who are occupation holders and has as output the proportion of those individuals who are classified by the European Skills, Competences, Qualifications and Occupations as door-to-door sales worker, news or street vendors; building cleaning workers; pressers, textile, garment, or related materials; septic tank servicers or sewer pipe cleaners; farmworkers or laborers, crop, nursery, or greenhouse; farmworkers, farm, ranch, or aquacultural animal; agricultural workers, all other; landscaping or groundskeeping workers; grounds maintenance workers, all other; forest or conservation workers; logging workers, all other; fishing or hunting workers; helpers--extraction workers; extraction workers, all other; helpers, construction trades; rail-track laying or maintenance equipment operators; construction laborers; helpers--production workers; production workers, all other; laborers or material movers; refuse or recyclable material collectors; couriers or messengers; material moving workers, all other; aircraft cargo handling supervisors; first-line supervisors of helpers, laborer, or material mover, hand; first-line supervisors of transportation worker, all other; tank car, truck, or ship loaders; cooks, fast food; cooks, short order; food preparation workers; dining room or cafeteria attendants or bartender helpers; dishwashers; food preparation or serving related workers, all other; personal care or service workers, all other; baggage porters or bellhops; maintenance or repair workers, general; installation, maintenance, or repair workers, all other; meter readers, utilities; coin, vending, or amusement machine servicers or repairers; motion picture projectionists; ushers, lobby attendants, or ticket takers; amusement or recreation attendants; locker room, coatroom, or dressing room attendants; and parking attendants.
editor note: Currently, the Occupation Ontology (OccO ) only represents occupations as they are defined by O*NET. We define this class extentionally according to the O*NET-defined occupations that map to occupations in ESCO that are classified as elementary occupations.
definition editor: Matthew Diller
contributor: William R. Hogan

Medicaid policy holder role
type: Class
subclass of: policy holder role
definition: A policy holder role that inheres in a person who participates in the creation of an insurance policy with a US state Medicaid agency.
contributor: Matthew Diller
contributor: William R. Hogan

insurance company
type: Class
subclass of: insurance organization
definition: An insurance organization that is privately owned and that participates in the creation of insurance policies in return for some money from the policy holder.
definition editor: Matthew Diller
contributor: William R. Hogan

private insurance policy holder role
type: Class
subclass of: policy holder role
definition: A policy holder role that inheres in a person who participates in the creation of an insurance policy with an insurance company.
definition editor: Matthew Diller
contributor: William R. Hogan

US state Medicaid agency
type: Class
subclass of: governmental organization
definition: A government organization that administers a given US state's Medicaid program by participating in the creation of insurance policies with eligible people and by participating in some payment of debt for a specified aggregate of health care encounters, specified processes (e.g, treatments, diagnostic tests) that are part of those encounters, and material entities used or prescribed during the encounters (e.g., medicine, prosthetics, glasses).
definition editor: Matthew Diller
contributor: William R. Hogan

highest level of education is below high school completion or equivalent data item
type: Class
subclass of: highest level of education data item
definition: A highest level of education data item that represents the fact that an individual in the United States is has not achieved a level of education that is equivalent to or higher than a complete high school education.
definition editor: William R. Hogan
source: http://orcid.org/0000-0003-1909-9269

categorization scheme
type: Class
subclass of: information content entity
definition: An information content entity that characterizes some aggregate of entities as partitioned into distinct subgroups, thereby demarcating them as categories.
definition editor: Matthew Diller
contributor: S. Clint Dowland
contributor: William R. Hogan

social categorization scheme
type: Class
subclass of: categorization scheme
subclass of: Restriction
  on property: demarcates
  all values from: collection of humans
definition: A categorization scheme that divides humans into groups considered by themselves or others as distinct on the basis of assumed common characteristics.
definition editor: Matthew Diller
contributor: S. Clint Dowland
contributor: William R. Hogan

highest level of education is some college data item
type: Class
subclass of: highest level of education data item
definition: A highest level of education data item that represents the fact that the highest level of education achieved by an individual in the United States is completion of some undergraduate coursework, but without attaining an undergraduate degree.
definition editor: William R. Hogan
Source: http://orcid.org/0000-0003-1909-9269

social category
type: Class
subclass of: collection of humans
subclass of: Restriction
  on property: demarcated by
  some values from: social categorization scheme
definition: A collection of humans demarcated by some social categorization scheme.
definition editor: Matthew Diller
contributor: S. Clint Dowland
contributor: William R. Hogan

racial categorization scheme
type: Class
subclass of: social categorization scheme
definition: A social categorization scheme based on characteristics assumed to be biologically hereditary and to result in part from common locality of ancestors.
definition editor: Matthew Diller
contributor: S. Clint Dowland
contributor: William R. Hogan

racial category
type: Class
subclass of: social category
subclass of: Restriction
  on property: demarcated by
  some values from: racial categorization scheme
definition: A social category demarcated by some racial categorization scheme.
definition editor: Matthew Diller
alternative term: racial group
contributor: S. Clint Dowland
contributor: William R. Hogan

ethnic categorization scheme
type: Class
subclass of: social categorization scheme
definition: A social categorization scheme based on characteristics that are primarily cultural—such as ancestry, history, national or tribal background, cultural attachments or traditions, past linguistic heritage, religious affiliations, caste, or claimed kinship.
definition editor: Matthew Diller
contributor: S. Clint Dowland
contributor: William R. Hogan

ethnic category
type: Class
subclass of: social category
subclass of: Restriction
  on property: demarcated by
  some values from: ethnic categorization scheme
definition: A social category demarcated by some ethnic categorization scheme.
definition editor: Matthew Diller
alternative term: ethnic group
contributor: S. Clint Dowland
contributor: William R. Hogan

personal data disclosure
type: Class
subclass of: communication
subclass of: Restriction
  on property: has part
  some values from: Class
    intersection of: concretization-utilization process
    intersection of: Restriction
      on property: has participant
      some values from: Class
        intersection of: specifically dependent continuant
        intersection of: Restriction
definition: Communication in which a person reports some data items about either that person or another person.
definition editor: Matthew Diller
contributor: S. Clint Dowland
contributor: William R. Hogan

subjective representation
type: Class
subclass of: cognitive representation
definition: A cognitive representation in which the representation’s bearer is represented as being its bearer.
definition editor: Matthew Diller
contributor: S. Clint Dowland
contributor: William R. Hogan

social identity
type: Class
subclass of: subjective representation
subclass of: Restriction
  on property: concretizes
  some values from: Class
    intersection of: generically dependent continuant
    intersection of: Class
      intersection of: Restriction
        on property: is about
        some values from: Homo sapiens
      intersection of: Restriction
        on property: is about
        some values from: social category
definition: A subjective representation of its bearer as being a member of some social category.
definition editor: Matthew Diller
contributor: S. Clint Dowland
contributor: William R. Hogan

racial identity
type: Class
subclass of: social identity
subclass of: Restriction
  on property: concretizes
  some values from: Class
    intersection of: generically dependent continuant
    intersection of: Class
      intersection of: Restriction
        on property: is about
        some values from: Homo sapiens
      intersection of: Restriction
        on property: is about
        some values from: racial category
definition: A social identity for which the category is a racial category.
definition editor: Matthew Diller
contributor: S. Clint Dowland
contributor: William R. Hogan

highest level of education is some but not all high school data item
type: Class
subclass of: highest level of education data item
definition: A highest level of education data item that represents the fact that the highest level of education achieved by an individual in the United States is completion of some high school coursework, but without attaining a diploma or equivalent.
definition editor: William R. Hogan
Source: http://orcid.org/0000-0003-1909-9269

ethnic identity
type: Class
subclass of: social identity
subclass of: Restriction
  on property: concretizes
  some values from: Class
    intersection of: generically dependent continuant
    intersection of: Class
      intersection of: Restriction
        on property: is about
        some values from: Homo sapiens
      intersection of: Restriction
        on property: is about
        some values from: ethnic category
definition: A social identity for which the category is an ethnic category.
definition editor: Matthew Diller
contributor: S. Clint Dowland
contributor: William R. Hogan

behavioral identity
type: Class
subclass of: social identity
definition: A social identity for which the category is also a behaviorally distinct group defined by its members degree of participation in some type of behavior.
definition editor: Matthew Diller
contributor: S. Clint Dowland
contributor: William R. Hogan

highest level of education is completion of high school or equivalent data item
type: Class
subclass of: highest level of education data item
definition: A highest level of education data item that represents the fact that the highest level of education achieved by an individual in the United States is completion of high school or equivalent.
definition editor: William R. Hogan
Source: http://orcid.org/0000-0003-1909-9269

occupation disposition
type: Class
subclass of: disposition
definition: A disposition that, if realized, is realized when the bearer intends to, and does, exercise abilities and skills in pursuit of obtaining or maintaining an job role.
definition editor: Matthew Diller
contributor: Damion Dooley
contributor: Jie Zheng
contributor: John Beverley
contributor: John W. Judkins
contributor: Sam Smith
contributor: William D. Duncan
contributor: William R. Hogan
contributor: Yongqun He

occupation activity
type: Class
subclass of: process
definition: A process in which an occupation holder participates that realizes either an occupation disposition or job role.
definition editor: Matthew Diller
alternative term: occupation process
contributor: Damion Dooley
contributor: Eric Merrell
contributor: Jie Zheng
contributor: John Beverley
contributor: John W. Judkins
contributor: Sam Smith
contributor: William D. Duncan
contributor: William R. Hogan
contributor: Yongqun He

U.S. veteran role
type: Class
subclass of: human role within an organization
definition: A human role within an organization that inheres in a person who has served in a branch of the U.S. military, is not currently serving in the U.S. military, and the person's service ended in accordance to conditions defined by the U.S. government.
definition editor: Matthew Diller
definition source: 38 U.S.C. §101(2), as well as “Determining Veteran Status” by the U.S. Department of Veterans Affairs (VA) Office of Small and Disadvantaged Business Utilization (OSDBU): https://www.va.gov/OSDBU/docs/Determining-Veteran-Status.pdf.
contributor: Mathias Brochhausen
contributor: S. Clint Dowland
contributor: William D. Duncan
contributor: William R. Hogan

public housing function
type: Class
subclass of: residence function
subclass of: Class
  intersection of: residence function
  intersection of: Restriction
    on property: characteristic of
    some values from: housing unit
  intersection of: Restriction
    on property: realized in
    all values from: Restriction
      on property: realizes
      some values from: public housing eligibility role
definition: A residence function that is realized only in processes in which eligible and approved residents participate, and that is a characteristic of a housing unit that is owned by a government and intended for use by seniors, people with disabilities, or those with low incomes.
definition editor: William R. Hogan
Source: S. Clint Dowland

public housing eligibility role
type: Class
subclass of: role in human social processes
subclass of: Class
  intersection of: role in human social processes
  intersection of: Restriction
    on property: characteristic of
    some values from: Homo sapiens
  intersection of: Restriction
    on property: realized in
    all values from: Restriction
      on property: realizes
      some values from: public housing function
definition: A role that inheres in a person who qualifies for public housing according to the criteria set forth by the relevant governmental entity and that is realized in processes that both have the person as a participant and realize the public housing function of some housing unit.
definition editor: William R. Hogan
Source: S. Clint Dowland

human traveler role
type: Class
subclass of: role in human social processes
subclass of: Restriction
  on property: realized in
  some values from: human travel
definition: A role that if realized, is realized by the bearer participating in human travel.
definition editor: William R. Hogan
alternative term: human traveller role
contributor: Matt Diller
comment: See discussion at: https://github.com/mcwdsi/OMRSE/issues/191

gender categorization scheme
type: Class
subclass of: social categorization scheme
definition: A social categorization scheme based on the social identities assumed to be coincident of certain biological traits linked to reproduction and/or reproductive behavior.
definition editor: ORCID: 0000-0002-5039-2052
contributor: S. Clint Dowland

gender category
type: Class
subclass of: social category
subclass of: Restriction
  on property: demarcated by
  some values from: gender categorization scheme
definition: A social category demarcated by some gender categorization scheme.
definition editor: ORCID: 0000-0002-5039-2052
alternative term: gender group
contributor: S. Clint Dowland

social category data item
type: Class
subclass of: data item
subclass of: Restriction
  on property: is about
  some values from: Homo sapiens
subclass of: Restriction
  on property: is about
  some values from: social category
definition: A data item according to which a given person is a member of a given social category.
definition editor: ORCID: 0000-0002-5039-2052
contributor: S. Clint Dowland

ethnic category data item
type: Class
subclass of: social category data item
subclass of: Restriction
  on property: is about
  some values from: ethnic category
definition: A social category data item for which the social category is an ethnic category.
definition editor: ORCID: 0000-0002-5039-2052
contributor: S. Clint Dowland

gender category data item
type: Class
subclass of: social category data item
subclass of: Restriction
  on property: is about
  some values from: gender category
definition: A social category data item for which the social category is a gender category.
definition editor: ORCID: 0000-0002-5039-2052
contributor: S. Clint Dowland

racial category data item
type: Class
subclass of: social category data item
subclass of: Restriction
  on property: is about
  some values from: racial category
definition: A social category data item for which the social category is a racial category.
definition editor: ORCID: 0000-0002-5039-2052
contributor: S. Clint Dowland

gender identity
type: Class
subclass of: social identity
subclass of: Restriction
  on property: concretizes
  some values from: Class
    intersection of: generically dependent continuant
    intersection of: Class
      intersection of: Restriction
        on property: is about
        some values from: Homo sapiens
      intersection of: Restriction
        on property: is about
        some values from: gender category
definition: A social identity for which the category is a gender category.
definition editor: ORCID: 0000-0002-5039-2052
contributor: S. Clint Dowland

nationality categorization scheme
type: Class
subclass of: social categorization scheme
definition: A social categorization scheme based on the social identities assumed as a result of a person's citizenship of a country.
definition editor: ORCID: 0000-0002-5039-2052
contributor: https://orcid.org/0000-0002-5039-2052
comment: A person may be a citizen of multiple countries at once, and a person's citizenship may change over time.

nationality category data item
type: Class
subclass of: social category data item
subclass of: Restriction
  on property: is about
  some values from: nationality category
definition: A social category data item for which the social category is a nationality category.
definition editor: ORCID: 0000-0002-5039-2052
contributor: https://orcid.org/0000-0002-5039-2052

nationality category
type: Class
subclass of: social category
subclass of: Restriction
  on property: demarcated by
  some values from: nationality categorization scheme
definition: A social category demarcated by some nationality categorization scheme.
definition editor: ORCID: 0000-0002-5039-2052
alternative term: nationality group
contributor: https://orcid.org/0000-0002-5039-2052

institutional health care provider role
type: Class
subclass of: human role within an organization
definition: A human role within an organization that itself bears a healthcare provider organization role.
definition editor: Matthew Diller
alternative term: human role within a healthcare organization
contributor: Colbie Reed
contributor: William R. Hogan

job role data item
type: Class
equivalent class: Class
  intersection of: data item
  intersection of: Restriction
    on property: is about
    some values from: Class
      union of: job role
      union of: Class
        intersection of: process
        intersection of: Restriction
subclass of: data item
subclass of: Restriction
  on property: is about
  some values from: Class
    union of: job role
    union of: Class
      intersection of: process
      intersection of: Restriction
        on property: realizes
        some values from: job role
example of usage: Can be about any aspect of employment, such as salary, work location, or employer.
definition: A data item that is about a person's job role and/or its realization.
definition editor: Matthew Diller
alternative term: employment data item
contributor: Chris Stoeckert
contributor: S. Clint. Dowland
contributor: William R. Hogan

income data item
type: Class
subclass of: socio-economic data item

government assistance health care plan data item
type: Class
subclass of: socio-economic data item

health care plan data item
type: Class
subclass of: socio-economic data item

government assistance income data item
type: Class
subclass of: socio-economic data item

WIC data item
type: Class
subclass of: socio-economic data item

socio-economic data item
type: Class
subclass of: data item

Afar
type: Class
subclass of: ObsoleteClass
type: NamedIndividual
type: language
editor preferred term: non-binary gender identity datum
definition: A gender identity datum resulting from a gender identification process in which ‘non binary’ is selected based on the participant's subjective sense of gender.
definition editor: Paul Fabry
definition editor: William Hogan
alternative term: Afaraf @aa
alternative term: Qafar af @aa
alternative term: Qafaraf @aa
alternative term: ’Afar Af @aa
term replaced by: non-binary gender identity information content entity
ISO 639-1 code: aa
ISO 639-2/B code: aar
ISO 639-2/T code: aar
comment: Alternatively: A gender identity datum stating that a person's subjective sense of gender is non-binary.) Examples of usage: ‘Non-binary’, ‘Trigender’, ‘Agender’, ‘Genderfluid’, ‘2’ (intended to refer to a non-binary gender role)
label: obsolete non-binary gender identity datum
deprecated: true

education process
type: Class
subclass of: planned process
editor preferred term: educating
definition: A planned process with an active participant who acquires mental representations of information content entities (ICEs), which had no previous mental representation in the cognitive system, and through repeated use or application of these ICEs either (1) becomes the bearer of a new instance of some type of capability, and the participant was not previously the bearer of that instance of that type of capability, (2) "improves" an existing capability as demonstrated through realization(s) of that capability, and/or (3) loses a capability whose realization is considered negative.
definition editor: William R. Hogan
alternative term: learning process
elucidation: An act of acquiring new information and repeatedly applying that information to develop a new skill, improve an existing skill, and/or losing a skill at doing something "bad".
comment: An interesting question is whether there must be another participant who is the "educator". Some might object that many people are "self taught". A real case of being self taught is the first person who learned to play a stringed instrument, or to spin a ball on the tip of a finger. There was no previous information about that type of skill. The ICEs acquired are via one's sensory systems (vision, proprioception, auditory, etc.). On the other hand, in the case of those who are self-taught by reading books or watching videos, or acquiring some other form of ICEs concretized outside their brain, one argument might be that the author of those ICEs somehow "plays a role" in the education, although they cannot participate in the education process itself (If I read Aristotle, and through repeated application of the information I acquire through doing so, develop the ability to write better ontology definitions, surely Aristotle did not actively participate in my particular education process, although he did influence it in a very real way).
comment: The loss of a "bad" capability is something like losing a bad golf swing and replacing it with a good one. Also a capability to disrupt the classroom might be something an educating process diminishes possibly to the point of "removal" in a student. This addition to the definition notwithstanding, we do not intend to incorporate the receipt of punishment into the definition of educating.

educational objective
type: Class
equivalent class: Class
  intersection of: objective specification
  intersection of: Restriction
    on property: is about
    some values from: Restriction
      on property: realized in
      some values from: education process
subclass of: objective specification
subclass of: Restriction
  on property: is about
  some values from: Restriction
    on property: realized in
    some values from: education process
editor preferred term: educational objective specification
definition: An objective specification that describes the type of capability or capabilities to be imparted or improved by its realization, which is an educating (education process).
definition editor: William R. Hogan
elucidation: An objective specification that describes the new knowledge & skill(s) to be obtained via an education process.

educational program
type: Class
equivalent class: Class
  intersection of: plan specification
  intersection of: Restriction
    on property: has part
    some values from: educational objective
subclass of: plan specification
subclass of: Restriction
  on property: has part
  some values from: educational objective
editor preferred term: educational plan specification
definition: A plan specification with an educational objective specification as part.
definition editor: William R. Hogan
elucidation: A plan specification with one or more educational objectives.
comment: Very broad. Covers everything from grade school to high school to college to graduate education, a MOOC, an individual course, a tutorial at a conference, a continuing education course or program, an informed consent video, etc, etc.

completing a program of education
type: Class
equivalent class: Class
  intersection of: education process
  intersection of: Restriction
    on property: realizes
    some values from: Restriction
      on property: concretizes
      some values from: educational program
subclass of: education process
subclass of: Restriction
  on property: realizes
  some values from: Restriction
    on property: concretizes
    some values from: educational program
editor preferred term: completing a program of education
definition: An educating that realizes a concretization of some program of education.
definition editor: William R. Hogan
comment: Note that parent class 'educating' and referenced class 'program of education' are defined elsewhere in this education module of OMRSE.
comment: This class refers extremely broadly to the successful realization of any program of education: a single course, first grade, MD, PhD, high school, the ninth grade, getting a black belt in karate, getting a master mechanic certification, a bachelor's degree, a masters degree, a graduate certificate, early childhood education program, and even getting a certificate at the end of some week-long workshop, summer camp, a certifcate from a cooking class, an actuarial certification.

early childhood education plan specification
type: Class
subclass of: educational program
subclass of: Class
  intersection of: educational program
  intersection of: Restriction
    on property: is concretized as
    some values from: Restriction
      on property: realized in
      all values from: Class
        intersection of: education process
        intersection of: Restriction
editor preferred term: early childhood education program
definition: An educational program whose intended active participant, when a concretization of it is realized, is a human child of age birth to 8 years or a human fetus prior to birth.
definition editor: William R. Hogan
alternative term: pre-K education program
alternative term: prekindergarten education program
alternative term: preschool education program
definition source: https://apps.who.int/iris/bitstream/handle/10665/69729/a91213.pdf

primary education program
type: Class
equivalent class: Class
  intersection of: educational program
  intersection of: Class
    complement of: Restriction
      on property: has part
      some values from: Class
        complement of: primary education objective
  intersection of: Restriction
    on property: has part
    some values from: primary education objective
subclass of: educational program
subclass of: Restriction
  on property: has part
  some values from: primary education objective
editor preferred term: primary education plan specification
definition: An education plan specification with one or more primary education objective specifications as parts, and these are the only objective specifications it has as parts.
definition editor: William R. Hogan
alternative term: elementary education
comment: In the united states, also called "elementary education"
comment: It can still have action specifications as parts, and possibly other ICEs as parts. That's why we cannot say it has only primary education objectives as parts, and we have to introduce the double negative in the class axiom.
comment: Primary education provides learning and educational activities typically designed to provide students with fundamental skills in reading, writing and mathematics (i.e. literacy and numeracy), and to establish a sound foundation for learning and solid understanding of core areas of knowledge and personal development, preparing for lower secondary education. It aims at learning at a basic level of complexity with little if any specialisation.

primary education objective
type: Class
subclass of: educational objective
editor preferred term: primary education objective specification
definition: An education objective specification that has a concretization that, when realized, results in the active participant's acquisition and development of fundamental skills in reading, writing and mathematics (i.e. literacy and numeracy).
definition editor: William R. Hogan
definition source: http://uis.unesco.org/en/glossary-term/primary-education-isced-1
comment: By the end of primary education, the student has established a sound foundation for learning and solid understanding of core areas of knowledge and personal development, preparing for lower secondary education. It aims at learning at a basic level of complexity with little if any specialisation.

lower secondary education objective
type: Class
subclass of: educational objective
editor preferred term: lower secondary education objective specification
definition: An education objective specification that has a concretization that, when realized, confers to the active participant skills and knowledge in subject areas more specialized than basic reading, writing, and mathematics, with the overall goal of laying the foundation for lifelong learning and human development on which education systems may systematically expand further educational opportunities.
definition editor: William R. Hogan
definition source: http://uis.unesco.org/en/glossary-term/lower-secondary-education-isced-2
comment: Examples of specific subjects could--but are not necessarily required to--include biology, history, science, literature, music, art. Programs at this level are usually organized around a more subject-oriented curriculum, introducing theoretical concepts across a broad range of subjects.
comment: Programmes at ISCED level 2, or ‘lower secondary’ education, are typically designed to build upon the fundamental teaching and learning processes which begin at ISCED level 1. Usually, the educational aim is to lay the foundation for lifelong learning and human development on which education systems may systematically expand further educational opportunities. Programmes at this level are usually organized around a more subject-oriented curriculum, introducing theoretical concepts across a broad range of subjects.

awarding an academic degree
type: Class
equivalent class: Class
  intersection of: deontic document act
  intersection of: Restriction
    on property: has_specified_output
    some values from: academic degree
subclass of: deontic document act
subclass of: Restriction
  on property: has_specified_output
  some values from: academic degree
editor preferred term: awarding of an academic degree
definition: A deontic document act that has as specified output an academic degree and that confers on recipient of the academic degree the recognition and the claims and obligations that accompany the degree.
definition editor: William R. Hogan
comment: Different degrees have different claims and obligations associated with them. For example, having a medical degree (either M.D. or D.O.) entitles a person to sit for stage 3 of the US Medical Licensing Exam (otherwise one may not take the exam).

basic education program
type: Class
equivalent class: Class
  intersection of: educational program
  intersection of: Restriction
    on property: has part
    some values from: primary education objective
  intersection of: Restriction
    on property: has part
    some values from: lower secondary education objective
subclass of: educational program
subclass of: Restriction
  on property: has part
  some values from: primary education objective
subclass of: Restriction
  on property: has part
  some values from: lower secondary education objective
editor preferred term: basic education plan specification
definition: An education plan specification that has as part both a primary educational objective specification and a lower secondary educational objective specification.
definition editor: William R. Hogan
definition source: http://uis.unesco.org/en/glossary-term/basic-education
comment: Most nations in the world mandate that children complete at least a basic education program. Some nations go further and include upper secondary education after basic education.
comment: Whole range of educational activities, taking place in various settings, that aim to meet basic learning needs as defined in the World Declaration on Education for All (Jomtien, Thailand, 1990). According to ISCED standard, basic education comprises primary education (first stage of basic education) and lower secondary education (second stage). It also covers a wide variety of non-formal and informal public and private activities intended to meet the basic learning needs of people of all ages.

lower secondary education program
type: Class
equivalent class: Class
  intersection of: educational program
  intersection of: Class
    complement of: Restriction
      on property: has part
      some values from: Class
        intersection of: educational objective
        intersection of: Class
  intersection of: Restriction
    on property: has part
    some values from: lower secondary education objective
  intersection of: Restriction
    on property: is concretized as
    some values from: Restriction
      on property: realized in
      some values from: completing a program of education
subclass of: educational program
subclass of: Restriction
  on property: has part
  some values from: lower secondary education objective
subclass of: Restriction
  on property: is concretized as
  some values from: Restriction
    on property: realized in
    some values from: completing a program of education
editor preferred term: lower secondary education plan specification
definition: An education plan specification with one or more lower secondary education objective specifications as parts, and these are the only objective specifications it has as parts.
definition editor: William R. Hogan
comment: It can still have action specifications as parts, and possibly other ICEs as parts. That's why we cannot say it has only lower secondary education objectives as parts, and we have to introduce the double negative in the class axiom.
comment: Programmes at ISCED level 2, or ‘lower secondary’ education, are typically designed to build upon the fundamental teaching and learning processes which begin at ISCED level 1. Usually, the educational aim is to lay the foundation for lifelong learning and human development on which education systems may systematically expand further educational opportunities. Programmes at this level are usually organized around a more subject-oriented curriculum, introducing theoretical concepts across a broad range of subjects.
comment: Requires successful completion of a primary education program as a pre-requisite.

upper secondary education objective
type: Class
subclass of: educational objective
editor preferred term: upper secondary education objective specification
definition: An educational objective specification that has a concretization that, when realized, confers on the active participant skills and knowledge that prepare them for tertiary education, or employment, or both.
definition editor: William R. Hogan
definition source: http://uis.unesco.org/en/glossary-term/upper-secondary-education-isced-3
comment: Programmes at ISCED level 3, or ‘upper secondary’ education, are typically designed to complete secondary education in preparation for tertiary education, or to provide skills relevant to employment, or both. Programmes at this level offer students more varied, specialised and in-depth instruction than programmes at lower secondary education (ISCED level 2). They are more differentiated, with an increased range of options and streams available.

upper secondary education program
type: Class
equivalent class: Class
  intersection of: educational program
  intersection of: Class
    complement of: Restriction
      on property: has part
      some values from: Class
        intersection of: educational objective
        intersection of: Class
  intersection of: Restriction
    on property: has part
    some values from: upper secondary education objective
  intersection of: Restriction
    on property: is concretized as
    some values from: Restriction
      on property: realized in
      some values from: completing a program of education
subclass of: educational program
subclass of: Restriction
  on property: has part
  some values from: upper secondary education objective
subclass of: Restriction
  on property: is concretized as
  some values from: Restriction
    on property: realized in
    some values from: completing a program of education
editor preferred term: upper secondary education plan specification
definition: An education plan specification with one or more upper secondary education objective specifications as parts, and these are the only objective specifications it has as parts.
definition editor: William R. Hogan
comment: It can still have action specifications as parts, and possibly other ICEs as parts. That's why we cannot say it has only lower secondary education objectives as parts, and we have to introduce the double negative in the class axiom.
comment: Programmes at ISCED level 3, or ‘upper secondary’ education, are typically designed to complete secondary education in preparation for tertiary education, or to provide skills relevant to employment, or both. Programmes at this level offer students more varied, specialised and in-depth instruction than programmes at lower secondary education (ISCED level 2). They are more differentiated, with an increased range of options and streams available.
comment: Requires successful completion of a lower secondary education program as a pre-requisite.

higher education program
type: Class
equivalent class: Class
  intersection of: educational program
  intersection of: Class
    complement of: Restriction
      on property: has part
      some values from: Class
        intersection of: educational objective
        intersection of: Class
  intersection of: Restriction
    on property: has part
    some values from: higher education objective
  intersection of: Restriction
    on property: is concretized as
    some values from: Restriction
      on property: realized in
      some values from: completing a program of education
subclass of: educational program
subclass of: Restriction
  on property: has part
  some values from: higher education objective
subclass of: Restriction
  on property: is concretized as
  some values from: Restriction
    on property: realized in
    some values from: completing a program of education
editor preferred term: higher education plan specification
definition editor: William R. Hogan
alternative term: post-secondary education plan specification
alternative term: post-secondary education program
comment: Includes college, university, community college, professional schools (MD, RN, PharmD, PT, OT, DDS, dental hygienist, etc.), and so on.
comment: Refers to all higher education beyond secondary education, and thus encompasses ISCED levels 5 and above, which will eventually be subclasses of this one.
comment: Requires successful completion of a secondary education program as a pre-requisite.

higher education objective
type: Class
subclass of: educational objective
editor preferred term: higher education objective specification
definition: An educational objective specification that has a concretization that, when realized, confers on the active participant skills and knowledge in a specialized discipline, and culminates in the awarding of an academic degree.
definition editor: William R. Hogan
alternative term: post-secondary education objective
comment: Refers to all education beyond secondary education that leads to the awarding of an academic degree.

vocational education objective
type: Class
subclass of: educational objective
editor preferred term: vocational education objective specification
definition: An educational objective specification that has a concretization that, when realized, is realized by a process that confers on the active participant knowledge and skills required to realize a particular type of employee role for a given occupation or trade.
definition editor: William R. Hogan
definition source: http://uis.unesco.org/sites/default/files/documents/international-standard-classification-of-education-isced-2011-en.pdf
comment: Usually the skills are a major focus moreso than in other types of education. For example, auto mechanics, plumbers, and electricians.

highest level of education data item
type: Class
subclass of: socio-economic data item
editor preferred term: highest level of education socio-economic data item
definition: A socio-economic data item that is about a person and their completion of at least some of the required courses of an education program, where the set of planned competencies to be acquired by completing that program, as a whole, are of a more advanced nature than the set of competencies acquired through any other educational program completed by the person.
definition editor: William R. Hogan
contributor: Colbie Reed
contributor: Mathias Brochhausen
contributor: Matt Diller
comment: Note that by 'more advanced nature' of the competencies, we do not mean merely having more knowledge, but rather a set of competencies / capabilities that enable the person to do things of a fundamentally different nature than before. This distinction is exemplified by the difference between a Masters and a PhD degree. The PhD has a key objective of enabling the person to function as an investigator in the domain, whereas a Masters does not.
comment: This data item in a typical attribute-value system such as table, XML, JSON takes values like "secondary education", "Associate Degree", "Bachelor Degree", "High School", and so on. Also, note that we revised the definition in collaboration with our APRICOT project colleagues who noted that the individual need not have completed one of the education programs in a sequence, instead demonstrating competencies for admission to the highest level of eductation in some alternative way. For example, the highest level of education might be baccalaureate degree, but the individual did not graduate a secondary education program but instead got a General Educational Development (GED) certification / degree.

vocational education program
type: Class
equivalent class: Class
  intersection of: educational program
  intersection of: Restriction
    on property: has part
    some values from: vocational education objective
subclass of: educational program
subclass of: Restriction
  on property: has part
  some values from: vocational education objective
editor preferred term: vocational education plan specification
definition: An educational plan specification that has a vocational objective specification as part.
definition editor: William R. Hogan
definition source: http://uis.unesco.org/sites/default/files/documents/international-standard-classification-of-education-isced-2011-en.pdf
comment: Vocational education programs are designed for learners to acquire the knowledge, skills and competencies specific to a particular occupation, trade, or class of occupations or trades. Such programs may have work-based components (e.g. apprenticeships, dual-system education programmes). Successful completion of such programs leads to labor market-relevant, vocational qualifications acknowledged as occupationally-oriented by the relevant national authorities and/or the labor market.

kindergarten education program
type: Class
subclass of: primary education program
editor preferred term: kindergarten education plan specification
definition: A primary education plan specification that specifies the competencies and information content entities that should be acquired by students in the first year of primary education in the United States.
definition editor: William R. Hogan
creator: http://orcid.org/0000-0002-9881-1017
date: 2020-09-02T12:38:43Z

undergraduate higher education program
type: Class
subclass of: higher education program
editor preferred term: undergraduate higher education plan specification
definition: A higher education plan specification that specifies the awarding of an associates or bachelors degree in the United States or equivalent degrees in other nations, and specifies as a pre-requisite the completion of some secondary education program.
definition editor: William R. Hogan
alternative term: undergraduate education program
creator: http://orcid.org/0000-0002-9881-1017
date: 2020-09-02T12:52:46Z

graduate higher education program
type: Class
subclass of: higher education program
editor preferred term: graduate higher education plan specification
definition: A higher education plan specification that specifies the awarding of a graduate certificate or degree, and specifies as a pre-requisite the awarding of an undergraduate degree.
alternative term: graduate education program
creator: http://orcid.org/0000-0002-9881-1017
date: 2020-09-02T13:01:34Z
comment: Graduate degrees include masters, PhD, MD, PharmD, and other post-graduate professional degrees. To distinguish MS/PhD from the professional ones, subclass this class.
comment: The prerequisite degree is at the bachelors level or equivalent. An associates degree is almost never sufficient for entry into graduate education programs.

highest level of education is grades 1 through 6 data item
type: Class
subclass of: highest level of education data item
editor preferred term: highest level of education is completion of grades one through six socio-economic data item
definition: A highest level of education socio-economic data item that represents the fact that the highest level of education achieved by an individual in the United States is in the range of first through sixth grade.
definition editor: William R. Hogan
creator: http://orcid.org/0000-0002-9881-1017
date: 2020-09-02T13:23:46Z
comment: Note: this broad, very loose level of grouping emerged as an early requirement from the SODA project, funded by a PCORI Methods Grant, at the University of Florida with Dr. Yonghui Wu as PI. It indicates completion of some to all of primary education in the United States.

highest level of education is grades 7 through 9 data item
type: Class
subclass of: highest level of education data item
editor preferred term: highest level of education is completion of grades seven through nine socio-economic data item
definition: A highest level of education socio-economic data item that represents the fact that the highest level of education achieved by an individual in the United States is in the range of seventh (7th) through ninth (9th) grade.
definition editor: William R. Hogan
creator: http://orcid.org/0000-0002-9881-1017
date: 2020-09-02T13:27:15Z
comment: Note: this broad, very loose level of grouping emerged as an early requirement from the SODA project, funded by a PCORI Methods Grant, at the University of Florida with Dr. Yonghui Wu as PI. It indicates completion of some to all of lower secondary education in the United States.

highest level of education is grades 10 through 12 data item
type: Class
subclass of: highest level of education data item
editor preferred term: highest level of education is completion of grades ten through twelve socio-economic data item
definition: A highest level of education socio-economic data item that represents the fact that the highest level of education achieved by an individual in the United States is in the range of tenth (10th) through twelfth (12th) grade.
definition editor: William R. Hogan
creator: http://orcid.org/0000-0002-9881-1017
date: 2020-09-02T13:27:50Z
comment: Note: this broad, very loose level of grouping emerged as an early requirement from the SODA project, funded by a PCORI Methods Grant, at the University of Florida with Dr. Yonghui Wu as PI. It indicates completion of some to all of upper secondary education in the United States.

highest level of education is completion of undergraduate degree data item
type: Class
subclass of: highest level of education data item
editor preferred term: highest level of education is completion of some undergraduate degree socio-economic data item
definition: A highest level of education socio-economic data item that represents the fact that the highest level of education achieved by an individual in the United States is completion of some undergraduate degree.
definition editor: William R. Hogan
creator: http://orcid.org/0000-0002-9881-1017
date: 2020-09-02T13:28:27Z
comment: Note: The requirement for this class emerged as an early requirement from the SODA project, funded by a PCORI Methods Grant, at the University of Florida with Dr. Yonghui Wu as PI.

highest level of education is completion of graduate certificate or degree data item
type: Class
subclass of: highest level of education data item
editor preferred term: highest level of education is completion of some graduate degree socio-economic data item
definition: A highest level of education socio-economic data item that represents the fact that the highest level of education achieved by an individual in the United States is completion of some graduate certificate or degree.
definition editor: William R. Hogan
creator: http://orcid.org/0000-0002-9881-1017
date: 2020-09-02T13:28:49Z
comment: Note: The requirement for this class emerged as an early requirement from the SODA project, funded by a PCORI Methods Grant, at the University of Florida with Dr. Yonghui Wu as PI.

highest level of education is completion of vocaational education program data item
type: Class
subclass of: highest level of education data item
editor preferred term: highest level of education is completion of some vocational education program socio-economic data item
definition: A highest level of education socio-economic data item that represents the fact that the highest level of education achieved by an individual in the United States is completion of some vocational education program.
definition editor: William R. Hogan
creator: http://orcid.org/0000-0002-9881-1017
date: 2020-09-02T13:29:28Z
comment: Note: The requirement for this class emerged as an early requirement from the SODA project, funded by a PCORI Methods Grant, at the University of Florida with Dr. Yonghui Wu as PI.

highest level of education is completion of kindergarten data item
type: Class
subclass of: highest level of education data item
editor preferred term: highest level of education is completion of kindergarten socio-economic data item
definition: A highest level of education socio-economic data item that represents the fact that the highest level of education achieved by an individual in the United States is pre-kindergarten.
definition editor: William R. Hogan
creator: http://orcid.org/0000-0002-9881-1017
date: 2020-09-02T13:47:38Z
comment: Note: The requirement for this class emerged as an early requirement from the SODA project, funded by a PCORI Methods Grant, at the University of Florida with Dr. Yonghui Wu as PI. It indicates that a person has completed only early childhood education and nothing more.

highest level of education is completion of pre-kindergarten data item
type: Class
subclass of: highest level of education data item
editor preferred term: highest level of education is completion of pre-kindergarten socio-economic data item
definition: A highest level of education socio-economic data item that represents the fact that the highest level of education achieved by an individual in the United States is kindergarten.
definition editor: William R. Hogan
creator: http://orcid.org/0000-0002-9881-1017
date: 2020-09-02T13:48:10Z
comment: Note: The requirement for this class emerged as an early requirement from the SODA project, funded by a PCORI Methods Grant, at the University of Florida with Dr. Yonghui Wu as PI.

linguistic literacy competence
type: Class
subclass of: disposition
editor preferred term: language literacy competence
definition: A disposition borne by a human being that (1) has a linguistic competence as a dispositional part and (2) if realized, is realized by the bearer's achievement of some personal goal.
definition editor: William R. Hogan
alternative term: human literacy
alternative term: linguistic literacy
contributor: Jiang Bian
contributor: Xi Yang
contributor: Yonghui Wu
comment: Other dispositions that it can and likely does have as dispositional parts include cultural competencies, interpersonal competencies, competencies for navigating a society's systems of laws, claims, obligations, deontic declarations, and norms of financial and other economic exchange.
comment: The realization of this disposition by definition realizes the bearer's linguistic competence that is a dispositional part of this disposition. The realization of the linguistic competence would be an occurrent part of the realization of this disposition (and not a temporal part).
comment: Whereas linguistic competence may be afforded to non-human agents, literacy is nearly always considered in the context of human beings.

caregiver role
type: Class
subclass of: human social role
definition: A human social role that, if realized, is realized in providing assistance in the activities of daily living of another human being who possesses reduced capability to complete some of these activities alone.
definition editor: Matthew Diller
contributor: John Judkins
contributor: S. Clint Dowland
contributor: William R. Hogan

family relationship
type: Class
subclass of: relational quality
definition: A relational quality that inheres within two or more persons related as members of a domestic group, or a number of domestic groups linked through descent from a common ancestor, marriage, or adoption.
definition source: http://purl.obolibrary.org/obo/ERO_0002033
contributor: John Judkins
contributor: S. Clint Dowland
contributor: William R. Hogan
comment: We are also intending on including other family arrangements. This is something we are working on.

monetary personal income data item
type: Class
subclass of: data item
example of usage: Examples of monetary forms of payment include: wages, salary, or tips; interest generated by capital; dividends earned; lottery, game, or contest monetary winnings; alimony; royalties; trusts; pensions; receipt of rental payments; unemployment payments; social security payments; worker's compensation; social security payments; or profit from entrepreneurial activities.
definition: A data item that is about the sum of earnings for some person(s) from various forms of payment or profits.
definition editor: Matthew Diller
contributor: Chris Stoeckert
comment: We use the phrase ‘some person’ in the definition because this class can be about an individual's or a household's earnings. Similarly, we use 'personal income' in the label because the term is typically restricted to individuals and households. This class is also restricted to being about monetary forms of income.

concretization-utilization process
type: Class
subclass of: process
subclass of: Restriction
  on property: has participant
  some values from: material entity
subclass of: Restriction
  on property: has participant
  some values from: Class
    intersection of: specifically dependent continuant
    intersection of: Restriction
      on property: concretizes
      some values from: generically dependent continuant
example of usage: Taking notes on a meeting is an example in which the concretization relation is newly established, since the SDCs that concretize the GDCs come into existence as the notes are written. In contrast, using slides prepared by someone else in order to convey information during a presentation is a case of using a concretization in which the performer neither brings the concretizing SDCs into existence nor is responsible for their standing in the concretization relation to the relevant GDCs. A nonlinguistic example is drawing the logo of one’s favorite brand, in which one creates a pattern that concretizes a GDC that is also concretized by patterns on products of the brand.
definition: Process in which some participant utilizes some specifically dependent continuant as a concretization of some generically dependent continuant.
definition editor: S. Clint Dowland
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan
comment: Instances include any process that brings it about that some specifically dependent continuant begins to stand in a concretization relation to some generically dependent continuant, as well as any process in which someone makes use of a pre-established concretization relation. To be clear, instances do not include using concretizations of words or letters for purposes that do not make use of the concretization relations in which they stand (for example, hanging up a sign in a foreign language as a decoration because one likes the colors, despite having no idea what the sign says).
comment: Instances include, but are not limited to, processes that bring about cognitive concretizations.

linguistic concretization-utilization process
type: Class
subclass of: concretization-utilization process
subclass of: Restriction
  on property: has participant
  some values from: Class
    intersection of: material entity
    intersection of: Restriction
      on property: bearer of
      some values from: obsolete linguistic competence
definition: A concretization-utilization process in which the utilized specifically dependent continuant concretizes the generically dependent through use of some language.
definition editor: S. Clint Dowland
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan

concretization-interpretation process
type: Class
subclass of: process
subclass of: Restriction
  on property: has participant
  some values from: specifically dependent continuant
subclass of: Restriction
  on property: has participant
  some values from: material entity
example of usage: For example, reading a text message that says, “It is raining outside,” and inferring that the words on the screen are meant to convey information about the weather. The pattern on the screen that corresponds to the words is the SDC, and the ICE about the rain is the GDC. Or, hearing your spouse say, “Can you come to the kitchen?” and then knowing that your spouse wants you to come to the kitchen. You have interpreted the patterns of the sound as concretizing a GDC about what your spouse wants. Or, seeing a drawing of a basketball player and inferring—perhaps incorrectly—that it is of Michael Jordan.
definition: Process in which some participant infers that some particular specifically dependent continuant stands in the concretization relation to some particular generically dependent continuant.
definition editor: S. Clint Dowland
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan
comment: The interpretation need not be accurate. It may even be the case that the specifically dependent continuant has not previously concretized anything.

linguistic concretization-interpretation process
type: Class
subclass of: concretization-interpretation process
subclass of: Restriction
  on property: has participant
  some values from: Class
    intersection of: material entity
    intersection of: Restriction
      on property: bearer of
      some values from: obsolete linguistic competence
definition: A concretization-interpretation process in which the specifically dependent continuant is inferred to concretize the generically dependent continuant in a way that makes use of some language.
definition editor: S. Clint Dowland
contributor: Matthew Diller
contributor: Sarah Bost
contributor: William R. Hogan

linguistic competence
type: Class
subclass of: disposition
subclass of: Restriction
  on property: characteristic of
  some values from: material entity
subclass of: Restriction
  on property: realized in
  all values from: Class
    union of: linguistic concretization-utilization process
    union of: linguistic concretization-interpretation process
definition: A disposition that inheres in some material entity and is such that that, if realized, it is realized by either some linguistic concretization-utilization process or some linguistic concretization-interpretation process.
definition editor: S. Clint Dowland
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: William R. Hogan
comment: When realized in a concretization-utilization process, the only relevant concretization may in some cases be a cognitive one, but that suffices to realize a linguistic competence. For example, suppose one begins to write a letter, planning out the words ahead of time, but is interrupted before beginning to write and never resumes. During the process of planning out the words and what one intends to communicate, one is already concretizing words cognitively, as well as considering which combinations of words one can use to concretize additional generically dependent continuants. In doing so, one performs processes that realize one's linguistic competence, without producing any concretizations other than those cognitive ones.

communication
type: Class
subclass of: process
subclass of: Restriction
  on property: has participant
  some values from: material entity
subclass of: Restriction
  on property: has participant
  some values from: Class
    intersection of: specifically dependent continuant
    intersection of: Restriction
      on property: concretizes
      some values from: generically dependent continuant
subclass of: Restriction
  on property:
    inverse of: occurrent part of
  some values from: concretization-utilization process
subclass of: Restriction
  on property:
    inverse of: occurrent part of
  some values from: concretization-interpretation process
definition: A process in which some participant shares some generically dependent continuant with some other participant. The former utilizes some specifically dependent continuant that concretizes the generically dependent continuant intended to be shared, while the latter interprets that specifically dependent continuant to concretize some particular generically dependent continuant, aiming to accurately infer the other participant’s intent.
definition editor: S. Clint Dowland
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: William R. Hogan
comment: For example, if you tell someone, “It is raining,” you produce sounds that have patterns that concretize information about the weather. Your utilization of that concretization is part of the communication. When the other person hears you, they interpret those patterns to concretize something, which may or may not be the same as what you intended to convey. In other words, they interpret the sounds you produce to have meanings associated with them, and that interpretation process is another part of the communication. If a process does not have a part of each type, it is not a communication.
comment: The interpretation need not correspond exactly to what was intended by the other participant.
comment: The term 'participant' in the definition need not refer to a human agent.

language
type: Class
subclass of: disposition
subclass of: Class
  intersection of: Restriction
    on property: has member
    some values from: linguistic competence
  intersection of: Restriction
    on property: has member
    all values from: linguistic competence
subclass of: Restriction
  on property: realized in
  all values from: Class
    union of: linguistic concretization-utilization process
    union of: linguistic concretization-interpretation process
definition: A disposition that (i) is an aggregate of linguistic competences, considered as forming a distinct group on the basis of perceived common characteristics, such as mutual intelligibility among their bearers, in addition to historical or cultural factors; (ii) if realized, is realized in any and all realizations of those linguistic competences; and (iii) inheres in a linguistic community.
definition editor: William R. Hogan
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: S. Clint Dowland

disclosure of preferred language
type: Class
subclass of: communication
subclass of: Restriction
  on property:
    inverse of: occurrent part of
  some values from: Class
    intersection of: concretization-utilization process
    intersection of: Restriction
      on property: has_specified_output
      some values from: Class
        intersection of: specifically dependent continuant
        intersection of: Restriction
definition: A communication in which some participant states a preference for some communicative process to be in a certain language, via some concretization of some preferred language information content entity.
definition editor: S. Clint Dowland
contributor: Mathias Brochhausen
contributor: Matthew Diller
contributor: William R. Hogan

preferred language information content entity
type: Class
subclass of: information content entity
subclass of: Restriction
  on property: is about
  some values from: material entity
subclass of: Restriction
  on property: is about
  some values from: language
definition: An information content entity that is about some person and some language, and that conveys the language with which that person prefers to communicate within some given context.
definition editor: Mathias Brochhausen
contributor: Matthew Diller
contributor: S. Clint Dowland
contributor: William R. Hogan

role in human social processes
type: Class
subclass of: material entity role
subclass of: Restriction
  on property: characteristic of
  all values from: material entity
definition: A role that inheres in some entity that is realized in a social act.
definition editor: Matthew Diller
contributor: Mathias Brochhausen
comment: Previous definition: A role played by an entity in human social processes.

academic degree
type: Class
subclass of: information content entity
definition: An information content entity that is the specified outcome of and documents the sucessful completion of a tertiary education program.
definition editor: John Judkins
definition editor: Mathias Brochhausen
OOSTT user-centered description: Recognized degree awarded after successful completion of a college or post-graduate porgram.

associate degree
type: Class
subclass of: academic degree
definition: An academic degree awarded by colleges and universities upon completion of a program of study lasting two years.
definition editor: John Judkins
definition editor: Mathias Brochhausen
definition source: https://en.wikipedia.org/w/index.php
OOSTT user-centered description: Recognition awarded after completion of a specific curriculum from an accredited tertiary education provider that falls between high school and bachelor's degree program.

master's degree
type: Class
subclass of: academic degree
definition: An academic degree awarded by universities upon completion of a course of study demonstrating a mastery or high-order overview of a specific field of study or area of professional practice.[1] Within the area studied, graduates are posited to possess advanced knowledge of a specialized body of theoretical and applied topics; high order skills in analysis, critical evaluation, or professional application; and the ability to solve complex problems and think rigorously and independently.
definition editor: John Judkins
definition editor: Mathias Brochhausen
definition source: https://en.wikipedia.org/w/index.php

bachelor's degree
type: Class
subclass of: academic degree
definition: An academic degree awarded by colleges and universities upon completion of a course of study lasting three to seven years.
definition editor: John Judkins
definition editor: Mathias Brochhausen
definition source: https://en.wikipedia.org/w/index.php

bachelor's of nursing degree
type: Class
subclass of: bachelor's degree
definition: An academic degree in the science and principles of nursing, granted by an accredited tertiary education provider after the successful completion of a bachelor's of nursing program.
definition editor: John Judkins
definition editor: Mathias Brochhausen
definition source: https://en.wikipedia.org/w/index.php

master's in the science of nursing degree
type: Class
subclass of: master's degree
definition: An academic degree in the science and principles of nursing, granted by an accredited tertiary education provider after the successful completion of a master's of nursing program.
definition editor: John Judkins
definition editor: Mathias Brochhausen
OOSTT user-centered description: An advanced academic degree in the principles and practices of nursing, with a focus on administration, education, or advanced nursing practice, granted by an accredited college or university after the successful completion of a master's of nursing program.

quality
type: Class
subclass of: specifically dependent continuant
definition: A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities
id: PATO:0000001

Axiom
annotated source: quality
annotated property: definition
annotated target: A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities
database_cross_reference: PATOC:GVG

age
type: Class
subclass of: quality
subclass of: Restriction
  on property: denoted by
  some values from: birthdate
definition: A time quality inhering in a bearer by virtue of how long the bearer has existed.
imported from: pato.owl
has_obo_namespace: quality
id: PATO:0000011
in_subset: attribute slim
in_subset: scalar slim

biological sex
type: Class
subclass of: quality
definition: An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.
imported from: pato.owl
has_obo_namespace: quality
id: PATO:0000047
in_subset: attribute slim

morphology
type: Class
subclass of: physical object quality
editor preferred term: morphology
definition: A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.
imported from: pato.owl

length
type: Class
subclass of: morphology
editor preferred term: length
definition: A 1-D extent quality which is equal to the distance between two points.
imported from: pato.owl

mass
type: Class
subclass of: physical quality
editor preferred term: mass
definition: A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter.
imported from: pato.owl

female
type: Class
subclass of: biological sex
definition: A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes.
imported from: pato.owl
has_obo_namespace: quality
id: PATO:0000383
in_subset: mpath slim
in_subset: value slim

male
type: Class
subclass of: biological sex
definition: A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes.
imported from: pato.owl
has_obo_namespace: quality
id: PATO:0000384
in_subset: mpath slim
in_subset: value slim

physical quality
type: Class
subclass of: physical object quality
editor preferred term: physical quality
definition: A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
imported from: pato.owl

quality of a single physical entity
type: Class
subclass of: quality
editor preferred term: quality of a single physical entity
definition: A physical object quality which inheres in a single-bearer.
imported from: vo.owl
imported from: PATO

physical object quality
type: Class
subclass of: quality
editor preferred term: physical object quality
definition: A quality which inheres in a continuant.
imported from: pato.owl

family
type: Class
subclass of: aggregate of objectual organisms
has curation status: metadata incomplete
definition: A domestic group, or a number of domestic groups linked through descent (demonstrated or stipulated) from a common ancestor, marriage, or adoption.
editor note: Needs axioms for family relationships.
definition source: http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25173
comment: Family membership through marriage or adoption apply primarily to human families. In most species, family membership is defined by common anscestry.

seizure
type: Class
subclass of: symptom
imported from: symp.owl
has_exact_synonym: seizure
has_obo_namespace: symptoms
id: SYMP:0000124

faint
type: Class
subclass of: symptom
definition: Faint is a alteration of consciousness characterized by a loss of consciousness because of a temporary decrease in the blood supply to the brain.
imported from: symp.owl
has_exact_synonym: fainting
has_exact_synonym: syncope
has_obo_namespace: symptoms
id: SYMP:0000445

symptom
type: Class
subclass of: quality of a single physical entity
definition: A symptom is a perceived change in function, sensation, loss, disturbance or appearance reported by a patient indicative of a disease.
imported from: symp.owl
database_cross_reference: SyOID:14974
has_obo_namespace: symptoms
id: SYMP:0000462

rash
type: Class
subclass of: symptom
definition: A skin and integumentary tissue symptom characterized as an eruption on the body typically with little or no elevation above the surface.
imported from: symp.owl
database_cross_reference: ICD9CM_2005:782.1
database_cross_reference: SyOID:13022
database_cross_reference: UMLS_CUI:C0015230
database_cross_reference: UMLS_ICD9CM_2005_AUI:A0243780
has_exact_synonym: erythema
has_exact_synonym: rubor
has_exact_synonym: skin eruption
has_exact_synonym: skin rash
has_exact_synonym: skin redness
has_obo_namespace: symptoms
id: SYMP:0000487

respiratory system and chest symptom
type: Class
subclass of: symptom
imported from: symp.owl
database_cross_reference: ICD9CM_2005:786
database_cross_reference: SyOID:5868
database_cross_reference: UMLS_CUI:C0476271
database_cross_reference: UMLS_ICD9CM_2005_AUI:A0284200
has_obo_namespace: symptoms
id: SYMP:0000514

chest pain
type: Class
subclass of: symptom
imported from: symp.owl
database_cross_reference: ICD9CM_2005:786.5
database_cross_reference: ICD9CM_2005:786.50
database_cross_reference: SyOID:4705
database_cross_reference: UMLS_CUI:C0008031
database_cross_reference: UMLS_ICD9CM_2005_AUI:A0243830
database_cross_reference: UMLS_ICD9CM_2005_AUI:A0400627
has_obo_namespace: symptoms
id: SYMP:0000576

convulsion
type: Class
subclass of: symptom
imported from: symp.owl
database_cross_reference: ICD9CM_2005:780.3
database_cross_reference: SyOID:6961
database_cross_reference: UMLS_CUI:C0009951
database_cross_reference: UMLS_ICD9CM_2005_AUI:A0042665
has_obo_namespace: symptoms
id: SYMP:0000596

wheezing
type: Class
subclass of: respiratory system and chest symptom
definition: Wheezing is a respiratory abnormality characterized by breathing with difficulty usually with a whistling sound.
imported from: symp.owl
database_cross_reference: ICD9CM_2005:786.07
database_cross_reference: SyOID:7248
database_cross_reference: UMLS_CUI:C0043144
database_cross_reference: UMLS_ICD9CM_2005_AUI:A0133941
has_obo_namespace: symptoms
id: SYMP:0000604

dizziness
type: Class
subclass of: symptom
definition: Dizziness is a neurological and physiological symptom characterized by a sensation of unsteadiness accompanied by a feeling of movement within the head.
imported from: symp.owl
database_cross_reference: ICD9CM_2005:780.4
database_cross_reference: SyOID:7637
database_cross_reference: UMLS_CUI:C0476206
database_cross_reference: UMLS_ICD9CM_2005_AUI:A0243727
has_exact_synonym: dizzy
has_obo_namespace: symptoms
id: SYMP:0000610

fever
type: Class
subclass of: symptom
definition: Fever is a neurological and physiological symptom characterized by a rise of body temperature above the normal whether a natural response (as to infection) or artificially induced for therapeutic reasons.
imported from: symp.owl
database_cross_reference: ICD9CM_2005:780.6
database_cross_reference: SyOID:776
database_cross_reference: UMLS_CUI:C0015967
database_cross_reference: UMLS_ICD9CM_2005_AUI:A0058972
has_exact_synonym: pyrexia
has_obo_namespace: symptoms
id: SYMP:0000613

low-grade fever
type: Class
subclass of: fever
definition: Low-grade fever is a fever that does not exceed 38.5 degree centrigrade.
imported from: symp.owl
created by: lschriml
creation date: 2010-10-15T11:28:26Z
has_obo_namespace: symptoms
id: SYMP:0000879

high fever
type: Class
subclass of: fever
definition: High fever is a fever that involved an elevated temperature.
imported from: symp.owl
created by: lschriml
creation date: 2010-10-15T11:28:26Z
has_obo_namespace: symptoms
id: SYMP:0000882

vomiting
type: Class
subclass of: symptom
definition: Vomiting is a digestive system symptom characterized by throwing up the stomach contents.
imported from: symp.owl
has_exact_synonym: emesis
has_obo_namespace: symptoms
id: SYMP:0019145

dyspnea
type: Class
subclass of: respiratory system and chest symptom
definition: Dyspnea is a respiratory abnormality characterized by difficult or labored respiration.
imported from: symp.owl
has_exact_synonym: breathing difficulty
has_exact_synonym: breathlessness
has_exact_synonym: difficulty breathing
has_exact_synonym: labored respiration
has_exact_synonym: shortness of breath
has_obo_namespace: symptoms
id: SYMP:0019153

mouth
type: Class
subclass of: gross anatomical part
definition: First portion of the digestive tract[WP]. The portion of the digestive that develops from the stomodeum
imported from: uberon.owl
imported from: vo.owl
database_cross_reference: AAO:0010355
database_cross_reference: BTO:0001090
database_cross_reference: EFO:0000825
database_cross_reference: FBbt:00003126
database_cross_reference: FMA:49184
database_cross_reference: GAID:75
database_cross_reference: MA:0002474
database_cross_reference: MAT:0000038
database_cross_reference: MESH:A.01.456.505.631
database_cross_reference: MIAA:0000038
database_cross_reference: OpenCyc:Mx4rvVidh5wpEbGdrcN5Y29ycA
database_cross_reference: TADS:0000040
database_cross_reference: TAO:0000547
database_cross_reference: TGMA:0000131
database_cross_reference: VHOG:0000812
database_cross_reference: XAO:0003029
database_cross_reference: ZFA:0000547
database_cross_reference: galen:Mouth
has_exact_synonym: adult mouth
has_exact_synonym: regio oralis
has_obo_namespace: uberon
has_related_synonym: cavitas oris
has_related_synonym: cavum oris
has_related_synonym: mouth cavity
has_related_synonym: oral vestibule
has_related_synonym: rima oris
has_related_synonym: stoma
has_related_synonym: vestibule of mouth
has_related_synonym: vestibulum oris
id: UBERON:0000165
in_subset: major organ
in_subset: uberon slim
in_subset: vertebrate core
comment: TODO - check fly mouthpart. note in uberon we distinguish between the mouth and the oral opening. the mouth is part of the digestive tract. TODO - check isa parent subdivision of head - is it a subdivision of the head or digestive tract

skeletal muscle tissue
type: Class
subclass of: gross anatomical part
definition: Tissue which consists of skeletal muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue of biceps, Skeletal muscle tissue of diaphragm[FMA]. Striated muscle tissue under control of the somatic nervous system. It is one of three major muscle types, the others being cardiac and smooth muscle. As its name suggests, most skeletal muscle is attached to bones by bundles of collagen fibers known as tendons. Skeletal muscle is made up of individual components known as muscle fibers. These fibers are formed from the fusion of developmental myoblasts. The myofibers are long, cylindrical, multinucleated cells composed of actin and myosin myofibrils repeated as a sarcomere, the basic functional unit of the cell and responsible for skeletal muscle's striated appearance and forming the basic machinery necessary for muscle contraction. The term muscle refers to multiple bundles of muscle fibers held together by connective tissue[WP].
imported from: uberon.owl
imported from: vo.owl
has_alternative_id: UBERON:FMA_14069-MA_0002439
database_cross_reference: AAO:0011099
database_cross_reference: BTO:0001103
database_cross_reference: EFO:0000888
database_cross_reference: EHDAA2:0001842
database_cross_reference: EHDAA:2923
database_cross_reference: EHDAA:5035
database_cross_reference: EHDAA:5043
database_cross_reference: EHDAA:5978
database_cross_reference: EHDAA:5984
database_cross_reference: EHDAA:8277
database_cross_reference: EHDAA:8291
database_cross_reference: EHDAA:8326
database_cross_reference: EHDAA:9146
database_cross_reference: EV:0100377
database_cross_reference: FMA:14069
database_cross_reference: GAID:141
database_cross_reference: MA:0002439
database_cross_reference: MAT:0000302
database_cross_reference: MESH:A.02.633.567
database_cross_reference: MIAA:0000302
database_cross_reference: OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA
database_cross_reference: SCTID:426215008
database_cross_reference: VHOG:0000319
database_cross_reference: XAO:0000174
database_cross_reference: ZFA:0005277
database_cross_reference: ncithesaurus:Skeletal_Muscle_Tissue
has_exact_synonym: skeletal muscle
has_obo_namespace: uberon
has_related_synonym: skeletal muscle organ
has_related_synonym: skeletal muscle system
has_related_synonym: somatic muscle
id: UBERON:0001134
in_subset: uberon slim
in_subset: vertebrate core
comment: TODO - add skeletal muscle organ? See GO:0060538 skeletal muscle organ development. Consider FBbt:00005073 - somatic muscle.

urinary bladder
type: Class
subclass of: gross anatomical part
definition: Organ with organ cavity which is continuous proximally with the right and left ureters and distally with the urethra.
imported from: uberon.owl
imported from: vo.owl
has_alternative_id: UBERON:FMA_15900-FMA_7203-MA_0000368-MA_0000380-MIAA_0000118-MIAA_0000119-MIAA_0000122-WBbt_0005775-XAO_0000154-ZFA_0000529
has_broad_synonym: excretory canal
database_cross_reference: AAO:0000623
database_cross_reference: BTO:0001418
database_cross_reference: EFO:0000290
database_cross_reference: EHDAA2:0000174
database_cross_reference: EHDAA:9328
database_cross_reference: EMAPA:18321
database_cross_reference: EV:0100098
database_cross_reference: FMA:15900
database_cross_reference: GAID:0000004
database_cross_reference: MA:0000380
database_cross_reference: MAT:0000122
database_cross_reference: MESH:A.05.810.161
database_cross_reference: MIAA:0000122
database_cross_reference: OpenCyc:Mx4rvVjMmZwpEbGdrcN5Y29ycA
database_cross_reference: SCTID:302512001
database_cross_reference: VHOG:0000740
database_cross_reference: XAO:0000154
database_cross_reference: galen:UrinaryBladder
database_cross_reference: ncithesaurus:Bladder
has_exact_synonym: bladder
has_obo_namespace: uberon
id: UBERON:0001255
in_subset: major organ
in_subset: organ slim
in_subset: uberon slim
comment: editor note: consider adding a 'bladder' grouping class

hypodermis
type: Class
subclass of: gross anatomical part
definition: Lowermost layer of the integumentary system in vertebrates. Types of cells that are found in the hypodermis are fibroblasts, adipose cells, and macrophages. It is derived from the mesoderm, but unlike the dermis, it is not derived from the dermatome region of the mesoderm. The hypodermis is used mainly for fat storage[WP]. A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane. It contains pigment cells[FMA].
imported from: uberon.owl
imported from: vo.owl
has_alternative_id: UBERON:FMA_70544-MIAA_0000418-ZFA_0000117-ZFA_0001136
database_cross_reference: BTO:0004525
database_cross_reference: FMA:70544
database_cross_reference: FMA:9630
database_cross_reference: GAID:929
database_cross_reference: MESH:A.10.165.887
database_cross_reference: TAO:0001136
database_cross_reference: ZFA:0001136
database_cross_reference: ncithesaurus:Superficial_Fascia
has_exact_synonym: hypoderm
has_exact_synonym: superficial fascia
has_exact_synonym: tela subcutanea
has_exact_synonym: vertebrate hypodermis
has_obo_namespace: uberon
has_related_synonym: subcutaneous tissue
has_related_synonym: subcutis
id: UBERON:0002072
in_subset: uberon slim
in_subset: vertebrate core
comment: Note that this class combines superficial fascia and hypodermis in FMA. Note also BTO has 'subcutis'

skin of body
type: Class
subclass of: gross anatomical part
definition: Nonparenchymatous organ that consists of the dermis and epidermis. Subdivisions of the skin surround various body parts; as a whole, the skin constitutes the external layer of the body. Examples: There is only one skin[FMA]. Surface structure that consists of the external membranous integument of the animal.
imported from: uberon.owl
imported from: vo.owl
has_alternative_id: UBERON:FMA_7163-MA_0000151-MIAA_0000284-XAO_0000023
database_cross_reference: BTO:0001253
database_cross_reference: EFO:0000962
database_cross_reference: EHDAA2:0001844
database_cross_reference: EMAPA:17525
database_cross_reference: FMA:7163
database_cross_reference: MESH:A.17.815
database_cross_reference: OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA
database_cross_reference: SCTID:181469002
database_cross_reference: XAO:0000023
database_cross_reference: galen:Skin
database_cross_reference: ncithesaurus:Skin
has_exact_synonym: entire skin
has_obo_namespace: uberon
has_related_synonym: integument
has_related_synonym: skin
id: UBERON:0002097
in_subset: major organ
in_subset: uberon slim
comment: Note that FMA uses 'skin' for the entire organ. XAO seems consistent. MA seems to use it analagously to zone of skin

length unit
type: Class
subclass of: measurement unit label
editor preferred term: length unit
imported from: uo.owl

mass unit
type: Class
subclass of: measurement unit label
editor preferred term: mass unit
imported from: uo.owl

time unit
type: Class
subclass of: measurement unit label
editor preferred term: time unit
imported from: uo.owl

Manitoba vaccination informed consent form
type: Class
subclass of: vaccination informed consent form
subclass of: Restriction
  on property: has part
  some values from: questionnaire for Manitoba vaccination consent
definition: A vaccination informed consent form that is provided by Manitoba government in Canada
creator: YL, YH

questionnaire for Manitoba vaccination consent
type: Class
subclass of: vaccination screening questionnaire
subclass of: Restriction
  on property: has component
  some values from: question whether currently sick
subclass of: Restriction
  on property: has component
  some values from: allergy question
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to egg
subclass of: Restriction
  on property: has component
  some values from: question on reaction after immunization
subclass of: Restriction
  on property: has component
  some values from: question on long-term health problem
subclass of: Restriction
  on property: has component
  some values from: question on any medication affecting blood clotting
definition: a questionnaire that is part of the Manitoba vaccination informed consent form.
editor note: We may also model the Minatoba Child Informed Consent form: http://www.gov.mb.ca/health/publichealth/cdc/div/docs/7707.pdf
definition editor: YH, YL

vaccination screening questionnaire
type: Class
subclass of: questionnaire
subclass of: Restriction
  on property: part of continuant at some time
  some values from: vaccination informed consent form
definition: A questionnaire that contains different questions of an intended vaccine reciepiant's health history, allergy history, and current condition, in order to assess the contraindication and precaution for administering a vaccine.
definition editor: YL,JZ,YH

question whether allergic to vaccine component
type: Class
subclass of: allergy question
definition: a question textual entity that asks whether the questionee is allergic to a vaccine component
definition editor: YL

don't know answer text entity
type: Class
subclass of: answer option text entity
creator: YL

questionnaire for Rite Aid vaccination consent
type: Class
subclass of: vaccination screening questionnaire
subclass of: Restriction
  on property: documented by
  has value: Rite Aid

filled questionnaire for Costco vaccination consent
type: Class
subclass of: questionnaire for Costco vaccination consent
subclass of: Restriction
  on property: is specified output of
  some values from: filling questionnaire
definition: a questionnaire for Costco vaccination consent that is filled
definition editor: YH, YL

filled questionnaire for Walgreens vaccination consent
type: Class
subclass of: questionnaire for Walgreens vaccination consent
subclass of: Restriction
  on property: is specified output of
  some values from: filling questionnaire
definition: a questionnaire for Walgreens vaccination consent that is filled
definition editor: YH, YL

questionnaire for Rite Aid vaccination consent in California
type: Class
subclass of: questionnaire for Rite Aid vaccination consent
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to vaccine component
subclass of: Restriction
  on property: has component
  some values from: question whether currently sick
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to latex
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to food
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to egg
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to medication
subclass of: Restriction
  on property: has component
  some values from: X-ray treatment question
subclass of: Restriction
  on property: has component
  some values from: question on vaccination in past 4 weeks
subclass of: Restriction
  on property: has component
  some values from: question on long-term heart disease
subclass of: Restriction
  on property: has component
  some values from: question on long-term lung disease
subclass of: Restriction
  on property: has component
  some values from: question on long-term metabolic disease
subclass of: Restriction
  on property: has component
  some values from: question on long-term diabetes
subclass of: Restriction
  on property: has component
  some values from: question on anemia
subclass of: Restriction
  on property: has component
  some values from: prednisone treatment question
subclass of: Restriction
  on property: has component
  some values from: steroids treatment question
subclass of: Restriction
  on property: has component
  some values from: question on current anti-cancer drug usage
subclass of: Restriction
  on property: has component
  some values from: question on seizure, brain, or nerve problem
subclass of: Restriction
  on property: has component
  some values from: question on blood or blood product transfusion, or immune (gamma) globulin in past year
subclass of: Restriction
  on property: has component
  some values from: question on cancer, leukemia, AIDS or any other immune system problem
subclass of: Restriction
  on property: has component
  some values from: question on long-term kidney disease
subclass of: Restriction
  on property: has component
  some values from: question on vaccination caused Guillain-Barre syndrome
subclass of: Restriction
  on property: has component
  some values from: question whether relate to new born infant
subclass of: Restriction
  on property: has component
  some values from: question on asthma history
subclass of: Restriction
  on property: has component
  some values from: question on serious reaction after immunization
subclass of: Restriction
  on property: has component
  some values from: question whether had Pneumococcal vaccination
subclass of: Restriction
  on property: has component
  some values from: question whether had Shingles vaccination
subclass of: Restriction
  on property: has component
  some values from: question whether had Tdap vaccination
subclass of: Restriction
  on property: has component
  some values from: question whether bring imunization record card
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on woman pregnancy now or during the next month
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: female vaccination patient
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on wheezing history
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: Class
        intersection of: 2-4 year old vaccination patient
        intersection of: Restriction
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on long-term aspirin therapy
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: Class
        intersection of: minor vaccination patient
        intersection of: Restriction
subclass of: Restriction
  on property: used in geographic location
  has value: State of California

vaccination patient with asthma
type: Class
subclass of: vaccination patient

questionnaire for Rite Aid injectable flu vaccination consent in South Carolina
type: Class
subclass of: questionnaire for Rite Aid vaccination consent
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to vaccine component
subclass of: Restriction
  on property: has component
  some values from: question whether currently sick
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to egg
subclass of: Restriction
  on property: has component
  some values from: question whether had Pneumococcal vaccination
subclass of: Restriction
  on property: has component
  some values from: question whether had Shingles vaccination
subclass of: Restriction
  on property: has component
  some values from: question whether had Tdap vaccination
subclass of: Restriction
  on property: has component
  some values from: question whether patient is older than 18 years old
subclass of: Restriction
  on property: has component
  some values from: question whether diagnosed with Guillain-Barre syndrome
subclass of: Restriction
  on property: has component
  some values from: question whether bring imunization record card
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on serious reaction after immunization
    intersection of: Restriction
      on property: is about vaccination procedure
      some values from: influenza vaccination
subclass of: Restriction
  on property: is about vaccination procedure
  some values from: injectable influenza vaccination
subclass of: Restriction
  on property: used in geographic location
  has value: State of South Carolina

questionnaire for Rite Aid non-flu vaccination consent in South Carolina
type: Class
subclass of: questionnaire for Rite Aid vaccination consent
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to vaccine component
subclass of: Restriction
  on property: has component
  some values from: question whether currently sick
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to latex
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to food
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to medication
subclass of: Restriction
  on property: has component
  some values from: X-ray treatment question
subclass of: Restriction
  on property: has component
  some values from: question on vaccination in past 4 weeks
subclass of: Restriction
  on property: has component
  some values from: question on long-term health problem
subclass of: Restriction
  on property: has component
  some values from: question on long-term lung disease
subclass of: Restriction
  on property: has component
  some values from: prednisone treatment question
subclass of: Restriction
  on property: has component
  some values from: steroids treatment question
subclass of: Restriction
  on property: has component
  some values from: question on current anti-cancer drug usage
subclass of: Restriction
  on property: has component
  some values from: question on seizure, brain, or nerve problem
subclass of: Restriction
  on property: has component
  some values from: question on blood or blood product transfusion, or immune (gamma) globulin in past year
subclass of: Restriction
  on property: has component
  some values from: question on cancer, leukemia, AIDS or any other immune system problem
subclass of: Restriction
  on property: has component
  some values from: question on vaccination caused disorder
subclass of: Restriction
  on property: has component
  some values from: question on vaccination caused Guillain-Barre syndrome
subclass of: Restriction
  on property: has component
  some values from: question whether relate to new born infant
subclass of: Restriction
  on property: has component
  some values from: question on asthma history
subclass of: Restriction
  on property: has component
  some values from: question on serious reaction after immunization
subclass of: Restriction
  on property: has component
  some values from: question whether smoke
subclass of: Restriction
  on property: has component
  some values from: question whether had Pneumococcal vaccination
subclass of: Restriction
  on property: has component
  some values from: question whether had Shingles vaccination
subclass of: Restriction
  on property: has component
  some values from: question whether had Tdap vaccination
subclass of: Restriction
  on property: has component
  some values from: question whether bring imunization record card
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on woman pregnancy now or during the next month
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: female vaccination patient
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on wheezing history
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: Class
        intersection of: 2-4 year old vaccination patient
        intersection of: Restriction
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on long-term aspirin therapy
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: Class
        intersection of: minor vaccination patient
        intersection of: Restriction
subclass of: Restriction
  on property: used in geographic location
  has value: State of South Carolina

questionnaire for Rite Aid vaccination consent in other states than SC, NC and CA
type: Class
subclass of: questionnaire for Rite Aid vaccination consent
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to vaccine component
subclass of: Restriction
  on property: has component
  some values from: question whether currently sick
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to latex
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to food
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to medication
subclass of: Restriction
  on property: has component
  some values from: X-ray treatment question
subclass of: Restriction
  on property: has component
  some values from: question on vaccination in past 4 weeks
subclass of: Restriction
  on property: has component
  some values from: question on long-term health problem
subclass of: Restriction
  on property: has component
  some values from: question on long-term lung disease
subclass of: Restriction
  on property: has component
  some values from: prednisone treatment question
subclass of: Restriction
  on property: has component
  some values from: steroids treatment question
subclass of: Restriction
  on property: has component
  some values from: question on current anti-cancer drug usage
subclass of: Restriction
  on property: has component
  some values from: question on seizure, brain, or nerve problem
subclass of: Restriction
  on property: has component
  some values from: question on blood or blood product transfusion, or immune (gamma) globulin in past year
subclass of: Restriction
  on property: has component
  some values from: question on cancer, leukemia, AIDS or any other immune system problem
subclass of: Restriction
  on property: has component
  some values from: question on vaccination caused disorder
subclass of: Restriction
  on property: has component
  some values from: question on vaccination caused Guillain-Barre syndrome
subclass of: Restriction
  on property: has component
  some values from: question whether relate to new born infant
subclass of: Restriction
  on property: has component
  some values from: question on asthma history
subclass of: Restriction
  on property: has component
  some values from: question on serious reaction after immunization
subclass of: Restriction
  on property: has component
  some values from: question whether smoke
subclass of: Restriction
  on property: has component
  some values from: question whether had Pneumococcal vaccination
subclass of: Restriction
  on property: has component
  some values from: question whether had Shingles vaccination
subclass of: Restriction
  on property: has component
  some values from: question whether had Tdap vaccination
subclass of: Restriction
  on property: has component
  some values from: question whether bring imunization record card
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on woman pregnancy now or during the next month
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: female vaccination patient
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on wheezing history
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: Class
        intersection of: 2-4 year old vaccination patient
        intersection of: Restriction
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on long-term aspirin therapy
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: Class
        intersection of: minor vaccination patient
        intersection of: Restriction

vaccination patient
type: Class
subclass of: Homo sapiens
subclass of: Restriction
  on property: participates_in
  some values from: vaccination
subclass of: Restriction
  on property: denoted by
  some values from: postal address
subclass of: Restriction
  on property: denoted by
  some values from: personal name
subclass of: Restriction
  on property: denoted by
  some values from: ethnic category data item
subclass of: Restriction
  on property: denoted by
  some values from: racial category data item
subclass of: Restriction
  on property: denoted by
  some values from: email address
subclass of: Restriction
  on property: denoted by
  some values from: gender identifier
subclass of: Restriction
  on property: member of
  some values from: household
subclass of: Restriction
  on property: hasAge
  all values from: real
definition: a human who is going to recieve an administration of a vaccine, who bears a vaccination patient role, which is realized when he/she sits in a vaccination provider's site and is the bject of screening questions for receiving a vaccine.
comment: After the vaccination process, this vaccination patient will bear the role of human vaccinee, and become a human vaccinee.
comment: If the patient is a minor, his/her legal representative will answer the screening question for him/her.

legal representative of minor vaccination patient
type: Class
subclass of: Homo sapiens

Costco vaccination informed consent form
type: Class
subclass of: vaccination informed consent form
subclass of: Restriction
  on property: has part
  some values from: questionnaire for Costco vaccination consent
subclass of: Restriction
  on property: documented by
  has value: Costco
subclass of: Restriction
  on property: used in geographic location
  has value: United States of America
definition: A vaccination informed consent form that is provided by Costco
definition editor: YH, YL

Walgreens vaccination informed consent form
type: Class
subclass of: vaccination informed consent form
subclass of: Restriction
  on property: has part
  some values from: questionnaire for Walgreens vaccination consent
subclass of: Restriction
  on property: documented by
  has value: Walgreens
subclass of: Restriction
  on property: used in geographic location
  has value: United States of America
definition: A vaccination informed consent form that is provided by Walgreens
definition editor: YH, YL

questionnaire for Walgreens vaccination consent
type: Class
subclass of: vaccination screening questionnaire
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to latex
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to egg
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to medication
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to vaccine
subclass of: Restriction
  on property: has component
  some values from: seizure disorder question
subclass of: Restriction
  on property: has component
  some values from: X-ray treatment question
subclass of: Restriction
  on property: has component
  some values from: question on vaccination in past 4 weeks
subclass of: Restriction
  on property: has component
  some values from: question on TB skin test in past 4 weeks
subclass of: Restriction
  on property: has component
  some values from: question on blood transfusion in past year
subclass of: Restriction
  on property: has component
  some values from: question on high-dose steroid therapy for longer than 2 weeks
subclass of: Restriction
  on property: has component
  some values from: question on current aspirin medication
subclass of: Restriction
  on property: has component
  some values from: question on cancer
subclass of: Restriction
  on property: has component
  some values from: question on leukemia
subclass of: Restriction
  on property: has component
  some values from: question on whether fainted or felt dizzy after immunization
subclass of: Restriction
  on property: has component
  some values from: question whether currently sick with a moderate to high fever, vomiting/diarrhea
subclass of: Restriction
  on property: has component
  some values from: question on asplenia
subclass of: Restriction
  on property: has component
  some values from: question on CSF leak
subclass of: Restriction
  on property: has component
  some values from: question on cochlear implant
subclass of: Restriction
  on property: has component
  some values from: question on weekly injection
subclass of: Restriction
  on property: has component
  some values from: question on weekly injection of adalmumab
subclass of: Restriction
  on property: has component
  some values from: question on weekly injection of infliximab
subclass of: Restriction
  on property: has component
  some values from: question on weekly injection of etanercept
subclass of: Restriction
  on property: has component
  some values from: question on home infusion
subclass of: Restriction
  on property: has component
  some values from: question on high-dose methotrexate usage
subclass of: Restriction
  on property: has component
  some values from: question on azathioprine or 6-mercaptopurine usage
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on woman pregnancy
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: female vaccination patient
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on thymus disease
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: Class
        intersection of: vaccination patient
        intersection of: Restriction
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on current antibiotics usage
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: Class
        intersection of: vaccination patient
        intersection of: Restriction
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on asthma or wheezing history
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: Class
        intersection of: 5 year and younger vaccination patient
        intersection of: Restriction
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on serious nasal condition
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: Class
        intersection of: vaccination patient
        intersection of: Restriction
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on history of thrombocytopenia or thrombocytopenic purpura
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: Class
        intersection of: vaccination patient
        intersection of: Restriction
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on current anti-malarial medication
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: Class
        intersection of: vaccination patient
        intersection of: Restriction
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question whether recieving aspirin-containing therapy
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: Class
        intersection of: minor vaccination patient
        intersection of: Restriction
subclass of: Restriction
  on property: documented by
  has value: Walgreens
subclass of: Restriction
  on property: used in geographic location
  has value: United States of America
definition: a questionnaire that is part of the Walgreens vaccination informed consent form.
definition editor: YH, YL

questionnaire for Costco vaccination consent
type: Class
subclass of: vaccination screening questionnaire
subclass of: Restriction
  on property: has component
  some values from: question whether currently sick
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to latex
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to food
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to egg
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to medication
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to vaccine
subclass of: Restriction
  on property: has component
  some values from: question on reaction after immunization
subclass of: Restriction
  on property: has component
  some values from: seizure disorder question
subclass of: Restriction
  on property: has component
  some values from: immunocompromisation question
subclass of: Restriction
  on property: has component
  some values from: cortisone treatment question
subclass of: Restriction
  on property: has component
  some values from: X-ray treatment question
subclass of: Restriction
  on property: has component
  some values from: question on vaccination in past 4 weeks
subclass of: Restriction
  on property: has component
  some values from: question on blood transfusion in past year
subclass of: Restriction
  on property: has component
  some values from: question on asthma or wheezing history
subclass of: Restriction
  on property: has component
  some values from: question on long-term heart disease
subclass of: Restriction
  on property: has component
  some values from: question on cancer
subclass of: Restriction
  on property: has component
  some values from: question on leukemia
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on woman pregnancy
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: female vaccination patient
subclass of: Restriction
  on property: documented by
  has value: Costco
subclass of: Restriction
  on property: used in geographic location
  has value: United States of America
definition: a questionnaire that is part of the Costco vaccination informed consent form.
definition editor: YH, YL

minor vaccination patient
type: Class
subclass of: vaccination patient
definition source: http://legal-dictionary.thefreedictionary.com/minor
definition source: https://en.wikipedia.org/wiki/Minor_(law)
definition: a vaccination patient who is under the age of legal competence.According to US Civil Law, which described a person under a certain age as less than so many years. In most states, a person is no longer a minor after reaching the age of 18.

female vaccination patient
type: Class
subclass of: vaccination patient
subclass of: Restriction
  on property: has gender
  some values from: female

flumist vaccination
type: Class
subclass of: intranasal influenza vaccination
subclass of: Restriction
  on property: has_specified_input
  some values from: Class
    union of: FluMist
    union of: FluMist Quadrivalent

Rite Aid vaccination informed consent form
type: Class
subclass of: vaccination informed consent form
subclass of: Restriction
  on property: has part
  some values from: questionnaire for Rite Aid vaccination consent
subclass of: Restriction
  on property: documented by
  has value: Rite Aid

pneumococcal vaccination
type: Class
subclass of: vaccination
subclass of: Restriction
  on property: has_specified_input
  some values from: Streptococcus pneumoniae vaccine

shingles vaccination
type: Class
subclass of: vaccination
subclass of: Restriction
  on property: has_specified_input
  some values from: Varicella-zoster virus vaccine
has synonym: Zoster vaccination

Tdap vaccination
type: Class
subclass of: vaccination
subclass of: Restriction
  on property: has_specified_input
  some values from: Diphtheria-Tetanus-Pertussis vaccine

vaccination patient over 65 years old
type: Class
subclass of: vaccination patient

questionnaire for Rite Aid vaccination consent in North Carolina
type: Class
subclass of: questionnaire for Rite Aid vaccination consent
subclass of: Class
  intersection of: Restriction
    on property: has component
    some values from: question whether had Pneumococcal vaccination
  intersection of: Restriction
    on property: asking vaccination patient
    some values from: Class
      intersection of: vaccination patient over 65 years old
      intersection of: Class
        union of: vaccination patient with asthma
        union of: vaccination patient with COPD
        union of: vaccination patient with smoking habit
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to vaccine component
subclass of: Restriction
  on property: has component
  some values from: question whether currently sick
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to latex
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to food
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to medication
subclass of: Restriction
  on property: has component
  some values from: X-ray treatment question
subclass of: Restriction
  on property: has component
  some values from: question on vaccination in past 4 weeks
subclass of: Restriction
  on property: has component
  some values from: question on TB skin test in past 4 weeks
subclass of: Restriction
  on property: has component
  some values from: question on long-term health problem
subclass of: Restriction
  on property: has component
  some values from: question on long-term lung disease
subclass of: Restriction
  on property: has component
  some values from: prednisone treatment question
subclass of: Restriction
  on property: has component
  some values from: steroids treatment question
subclass of: Restriction
  on property: has component
  some values from: question on current anti-cancer drug usage
subclass of: Restriction
  on property: has component
  some values from: question on seizure, brain, or nerve problem
subclass of: Restriction
  on property: has component
  some values from: question on blood or blood product transfusion, or immune (gamma) globulin in past year
subclass of: Restriction
  on property: has component
  some values from: question on cancer, leukemia, AIDS or any other immune system problem
subclass of: Restriction
  on property: has component
  some values from: question on vaccination caused disorder
subclass of: Restriction
  on property: has component
  some values from: question on vaccination caused Guillain-Barre syndrome
subclass of: Restriction
  on property: has component
  some values from: question on asthma history
subclass of: Restriction
  on property: has component
  some values from: question on serious reaction after immunization
subclass of: Restriction
  on property: has component
  some values from: question whether had Shingles vaccination
subclass of: Restriction
  on property: has component
  some values from: question whether had Tdap vaccination
subclass of: Restriction
  on property: has component
  some values from: question on antiviral drug usage
subclass of: Restriction
  on property: has component
  some values from: question on health provider precaution or warning of specific vaccination
subclass of: Restriction
  on property: has component
  some values from: question on faintig after vaccination
subclass of: Restriction
  on property: has component
  some values from: question whether diagnosed with rheumatoid arthritis
subclass of: Restriction
  on property: has component
  some values from: question whether diagnosed with ankylosing spondylitis
subclass of: Restriction
  on property: has component
  some values from: question whether diagnosed with Crohn’s disease
subclass of: Restriction
  on property: has component
  some values from: question whether bring imunization record card
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on woman pregnancy now or during the next month
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: female vaccination patient
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question whether allergic to gelatin
    intersection of: Restriction
      on property: is about vaccination procedure
      some values from: shingles vaccination
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on whether having cut, injury, puncture or open wound
    intersection of: Restriction
      on property: is about vaccination procedure
      some values from: Class
        union of: Tdap vaccination
        union of: Td vaccination
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question whether react to triple antibiotic ointment
    intersection of: Restriction
      on property: is about vaccination procedure
      some values from: shingles vaccination
subclass of: Restriction
  on property: used in geographic location
  has value: State of North Carolina

Td vaccination
type: Class
subclass of: vaccination
subclass of: Restriction
  on property: has_specified_input
  some values from: Diphtheria-Tetanus vaccine

vaccination patient with COPD
type: Class
subclass of: vaccination patient

vaccination patient with smoking habit
type: Class
subclass of: vaccination patient

2-4 year old vaccination patient
type: Class
subclass of: 5 year and younger vaccination patient

parent of minor vaccination patient
type: Class
subclass of: Homo sapiens

influenza vaccination
type: Class
subclass of: vaccination
subclass of: Restriction
  on property: has_specified_input
  some values from: Influenza virus vaccine

injectable influenza vaccination
type: Class
subclass of: influenza vaccination

intranasal influenza vaccination
type: Class
equivalent class: Class
  intersection of: influenza vaccination
  intersection of: intranasal vaccination
subclass of: influenza vaccination

Rite Aid injectable flu vaccination informed consent form in South Carolina
type: Class
subclass of: Rite Aid vaccination informed consent form
subclass of: Restriction
  on property: has part
  some values from: questionnaire for Rite Aid injectable flu vaccination consent in South Carolina
subclass of: Restriction
  on property: used in geographic location
  has value: State of South Carolina

Rite Aid non-flu vaccination informed consent form in South Carolina
type: Class
subclass of: Rite Aid vaccination informed consent form
subclass of: Restriction
  on property: has part
  some values from: questionnaire for Rite Aid non-flu vaccination consent in South Carolina
subclass of: Restriction
  on property: used in geographic location
  has value: State of South Carolina

Rite Aid vaccination informed consent form in California
type: Class
subclass of: Rite Aid vaccination informed consent form
subclass of: Restriction
  on property: has part
  some values from: questionnaire for Rite Aid vaccination consent in California
subclass of: Restriction
  on property: used in geographic location
  has value: State of California

Rite Aid vaccination informed consent form in North Carolina
type: Class
subclass of: Rite Aid vaccination informed consent form
subclass of: Restriction
  on property: has part
  some values from: questionnaire for Rite Aid vaccination consent in North Carolina
subclass of: Restriction
  on property: used in geographic location
  has value: State of North Carolina

Rite Aid vaccination informed consent form in other states than SC, NC and CA
type: Class
subclass of: Rite Aid vaccination informed consent form
subclass of: Restriction
  on property: has part
  some values from: questionnaire for Rite Aid vaccination consent in other states than SC, NC and CA

Manitoba Seasonal Influenza and Pneumococcal vaccination informed consent form
type: Class
subclass of: Manitoba vaccination informed consent form
subclass of: Restriction
  on property: has part
  some values from: questionare for Manitoba Seasonal Influenza and Pneumococcal vaccination consent

Manitoba child immunization consent form
type: Class
subclass of: Manitoba vaccination informed consent form
subclass of: Restriction
  on property: has part
  some values from: questionnaire for Manitoba child immunization consent

questionnaire for Manitoba child immunization consent
type: Class
subclass of: questionnaire for Manitoba vaccination consent
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: allergy question
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: minor vaccination patient
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on reaction after immunization
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: minor vaccination patient
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on woman pregnancy now or during the next month
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: minor vaccination patient
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question whether had Shingles vaccination
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: minor vaccination patient
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on health condition requires doctor visit
    intersection of: Restriction
      on property: asking vaccination patient
      some values from: minor vaccination patient
subclass of: Restriction
  on property: asking vaccination patient
  all values from: minor vaccination patient

yellow fever vaccination
type: Class
subclass of: vaccination
subclass of: Restriction
  on property: has_specified_input
  some values from: Yellow fever virus vaccine

MMR vaccination
type: Class
subclass of: vaccination
subclass of: Restriction
  on property: has_specified_input
  some values from: Measles-Mumps-Rubella vaccine

typhoid vaccination
type: Class
subclass of: vaccination
subclass of: Restriction
  on property: has_specified_input
  some values from: Salmonella typhi vaccine

oral typhoid vaccination
type: Class
subclass of: typhoid vaccination
subclass of: Restriction
  on property: has_specified_input
  some values from: typhoid live oral vaccine

live vaccine vaccination
type: Class
subclass of: vaccination

University of Maryland College Park vaccination informed consent form
type: Class
subclass of: vaccination informed consent form
subclass of: Restriction
  on property: documented by
  has value: University of Maryland, College Park

questionnaire for University of Maryland College Park vaccination consent
type: Class
subclass of: vaccination screening questionnaire
subclass of: Restriction
  on property: documented by
  has value: University of Maryland, College Park

UM College Park injectable influenza vaccination informed consent
type: Class
subclass of: University of Maryland College Park vaccination informed consent form
subclass of: Restriction
  on property: is about vaccination procedure
  some values from: injectable influenza vaccination

UM College Park flumist vaccination informed consent
type: Class
subclass of: University of Maryland College Park vaccination informed consent form
subclass of: Restriction
  on property: is about vaccination procedure
  some values from: flumist vaccination

UM College Park Smallpox vaccination informed consent form
type: Class
subclass of: University of Maryland College Park vaccination informed consent form

questionnaire for UM College Park flumist vaccination consent
type: Class
subclass of: questionnaire for University of Maryland College Park vaccination consent
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to latex
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to egg
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to medication
subclass of: Restriction
  on property: has component
  some values from: question on reaction after immunization
subclass of: Restriction
  on property: has component
  some values from: question on AIDS
subclass of: Restriction
  on property: has component
  some values from: question on asthma history
subclass of: Restriction
  on property: has component
  some values from: question whether diagnosed with Guillain-Barre syndrome
subclass of: Restriction
  on property: has component
  some values from: question on fever
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to egg products
subclass of: Restriction
  on property: has component
  some values from: question on stroke leading brain or nerve damage
subclass of: Restriction
  on property: has component
  some values from: question on convulsion leading brain or nerve damage
subclass of: Restriction
  on property: has component
  some values from: question on respiratory illness
subclass of: Restriction
  on property: has component
  some values from: question whether in contact with severely immunocompromised person
subclass of: Restriction
  on property: is about vaccination procedure
  some values from: flumist vaccination

questionnaire for UM College Park injectable influenza vaccination consent
type: Class
subclass of: questionnaire for University of Maryland College Park vaccination consent
subclass of: Restriction
  on property: has component
  some values from: question whether currently sick
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to latex
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to egg
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to medication
subclass of: Restriction
  on property: has component
  some values from: question on reaction after immunization
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to thimerosal
subclass of: Restriction
  on property: has component
  some values from: question whether diagnosed with Guillain-Barre syndrome
subclass of: Restriction
  on property: has component
  some values from: question on fever
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to egg products
subclass of: Restriction
  on property: has component
  some values from: question on woman's possibility of geting pregnant
subclass of: Restriction
  on property: is about vaccination procedure
  some values from: injectable influenza vaccination

screening questionnaire for UM College Park smallpox vaccination consent
type: Class
subclass of: questionnaire for University of Maryland College Park vaccination consent
subclass of: Restriction
  on property: has component
  some values from: question whether currently sick
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to latex
subclass of: Restriction
  on property: has component
  some values from: question on long-term heart disease
subclass of: Restriction
  on property: has component
  some values from: question on cancer
subclass of: Restriction
  on property: has component
  some values from: question on leukemia
subclass of: Restriction
  on property: has component
  some values from: question on AIDS
subclass of: Restriction
  on property: has component
  some values from: prednisone treatment question
subclass of: Restriction
  on property: has component
  some values from: steroids treatment question
subclass of: Restriction
  on property: has component
  some values from: question on current anti-cancer drug usage
subclass of: Restriction
  on property: has component
  some values from: question on woman pregnancy now or during the next month
subclass of: Restriction
  on property: has component
  some values from: question on whether having atopic dermatitis
subclass of: Restriction
  on property: has component
  some values from: question on stroke leading brain or nerve damage
subclass of: Restriction
  on property: has component
  some values from: question on woman's possibility of geting pregnant
subclass of: Restriction
  on property: has component
  some values from: question on agammaglobulinemia
subclass of: Restriction
  on property: has component
  some values from: question on lymphoma
subclass of: Restriction
  on property: has component
  some values from: question on SLE
subclass of: Restriction
  on property: has component
  some values from: question on drug usage after organ transplant
subclass of: Restriction
  on property: has component
  some values from: question on autoimmune disease drug usage
subclass of: Restriction
  on property: has component
  some values from: question on current condition leads to skin break
subclass of: Restriction
  on property: has component
  some values from: question onwhether having skin rash
subclass of: Restriction
  on property: has component
  some values from: question on whethere having severe burn
subclass of: Restriction
  on property: has component
  some values from: question on whether having impetigo
subclass of: Restriction
  on property: has component
  some values from: question whether having chickenpox
subclass of: Restriction
  on property: has component
  some values from: question on whether having shingles
subclass of: Restriction
  on property: has component
  some values from: question on whether having herpes
subclass of: Restriction
  on property: has component
  some values from: question on whether having psoriasis
subclass of: Restriction
  on property: has component
  some values from: question on whether having severe acne
subclass of: Restriction
  on property: has component
  some values from: question on Darier's disease
subclass of: Restriction
  on property: has component
  some values from: question on whether using steroid eye drop
subclass of: Restriction
  on property: has component
  some values from: question on whether diagnosed with myocardial infarction
subclass of: Restriction
  on property: has component
  some values from: question on whether diagnosed with angina
subclass of: Restriction
  on property: has component
  some values from: question on whether diagnosed with congestive heart failure
subclass of: Restriction
  on property: has component
  some values from: question on whether diagnosed with cardiomyopathy
subclass of: Restriction
  on property: has component
  some values from: question on whether had transient ischemic attack
subclass of: Restriction
  on property: has component
  some values from: question on chest pain
subclass of: Restriction
  on property: has component
  some values from: question on shortness of breath when exert
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to smallpox vaccine
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to polymixin B
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to streptomycin
subclass of: Restriction
  on property: has component
  some values from: question whethere allergic to chlortetracycline
subclass of: Restriction
  on property: has component
  some values from: question whethere allergic to neomycin
subclass of: Restriction
  on property: has component
  some values from: question on last month's sexual intercourse without effecctive birth control
subclass of: Restriction
  on property: has component
  some values from: question on sexual intercourse without effecctive birth control after the vaccination
subclass of: Restriction
  on property: has component
  some values from: question whether live with a child less than one year old
subclass of: Restriction
  on property: has component
  some values from: question whether current breast-feeding
subclass of: Restriction
  on property: has component
  some values from: question on current medication usage
subclass of: Restriction
  on property: has component
  some values from: question whether had organ transplant
subclass of: Restriction
  on property: has component
  some values from: Class
    intersection of: question on AIDS
    intersection of: question for household memeber of vaccination patient
subclass of: Restriction
  on property: is about vaccination procedure
  some values from: smallpox vaccination

smallpox vaccination
type: Class
subclass of: vaccination
subclass of: Restriction
  on property: has_specified_input
  some values from: Smallpox virus vaccine

household member of vaccination patient
type: Class
subclass of: Homo sapiens
definition: a person lives in the same house with vaccination patient
definition editor: YL

close physical contact person of vaccination patient
type: Class
subclass of: Homo sapiens
definition: a person who has close physical contact with the vaccination patient, such as sex partner
definition editor: YL

newborn infant
type: Class
subclass of: Homo sapiens
definition: A newborn infant, or neonate, is a child under 28 days of age.
definition editor: YL
definition source: WHO (http://www.who.int/topics/infant_newborn/en/)
NC ithesaurus: NCI: C16731
database_cross_reference: NCI: C16731

vaccination informed consent process
type: Class
subclass of: informed consent process
subclass of: Restriction
  on property: has participant
  some values from: vaccination patient
subclass of: Restriction
  on property: precedes
  some values from: vaccination
subclass of: Restriction
  on property: has_specified_input
  some values from: vaccination informed consent form
subclass of: Restriction
  on property: has_specified_input
  some values from: Vaccine Information Statement

question whether currently sick
type: Class
subclass of: current health condition question
subclass of: Restriction
  on property: is about
  some values from: sickness
definition: a question textual entity that asks whether the questionee is currently sick.
definition editor: YL, YH
database_cross_reference: LOINC:66373-2
has_exact_synonym: Are you sick today
comment: 1. Are you sick today? There is no evidence that acute illness reduces vaccine efficacy or increases vaccine adverse events (1). However, as a precaution with moderate or severe acute illness, all vaccines should be delayed until the illness has improved. Mild illnesses (such as upper respiratory infections or diarrhea) are NOT contraindications to vaccination. Do not withhold vaccination if a person is taking antibiotics. (http://www.immunize.org/catg.d/p4065.pdf)

allergy question
type: Class
subclass of: question textual entity
subclass of: Restriction
  on property: is about
  some values from: hypersensitivity reaction type I disease
definition: a question textual entity that asks whether the questionee is allergic to some material.
definition editor: YL, YH
comment: 2. Do you have allergies to medications, food, a vaccine component, or latex? If a person has anaphylaxis after eating gelatin, do not administer MMR,varicella, standard trivalent Fluzone, Flumist, rabies (Rabavert), oral typhoid, or yellow fever vaccine. A local reaction to a prior vaccine dose or vaccine components (e.g., latex) is not a contraindication to a subsequent dose or vaccine containing that component. For a table of vaccines supplied in vials or syringes that contain latex, go to www.cdc.gov/vaccines/pubs/pinkbook/downloads/appendices/B/latex-table.pdf. For an extensive list of vaccine components, see reference 2. An egg-free recombinant influenza vaccine (RIV3) may be used in people age 18 years and older with egg allergy of any severity who have no other contraindications. People younger than age 18 years who have experienced a serious systemic or anaphylactic reaction (e.g., hives, swelling of the lips or tongue, acute respiratory distress, or collapse) after eating eggs can usually be vaccinated with inactivated influenza vaccine (IIV); consult ACIP recommendations (see reference 3). 2. Table of Vaccine Components: www.cdc.gov/vaccines/pubs/pinkbook/downloads/appendices/B/excipient-table-2.pdf. 3. CDC. Prevention and control of influenza with vaccines:Recommendations of the Advisory Committee on Immunization Practices (ACIP), United States, 2015–16 Influenza Season at www.cdc.gov/mmwr/pdf/wk/mm6430.pdf, pages 818–825 http://www.immunize.org/catg.d/p4065.pdf

question whether allergic to latex
type: Class
subclass of: allergy question
definition: a question textual entity that asks whether the questionee is allergic to latex.
definition editor: YL, YH

question whether allergic to food
type: Class
subclass of: allergy question
subclass of: Restriction
  on property: is about
  some values from: food allergy
definition: a question textual entity that asks whether the questionee is allergic to food
definition editor: YL, YH

question whether allergic to egg
type: Class
subclass of: question whether allergic to food
subclass of: Restriction
  on property: is about
  some values from: egg allergy
definition: a question textual entity that asks whether the questionee is allergic to food
definition editor: YL, YH

question whether allergic to medication
type: Class
subclass of: allergy question
definition: a question textual entity that asks whether the questionee is allergic to a medication
definition editor: YL, YH

question whether allergic to vaccine
type: Class
subclass of: allergy question
definition: a question textual entity that asks whether the questionee is allergic to a vaccine
definition editor: YL, YH

question on reaction after immunization
type: Class
subclass of: question on past vaccination information
subclass of: Restriction
  on property: is about
  some values from: vaccine adverse event
definition: a question textual entity that asks whether the questionee had any reaction after a vaccination (i.e., immunization) in the past.
definition editor: YL, YH

seizure disorder question
type: Class
subclass of: question on seizure, brain, or nerve problem
subclass of: Restriction
  on property: is about
  some values from: seizure
definition: a question textual entity that asks whether the questionee has experienced any seizure disorder
definition editor: YL, YH

immunocompromisation question
type: Class
subclass of: question textual entity
subclass of: Restriction
  on property: is about
  some values from: immunocompromised condition
definition: a question textual entity that asks whether the vaccination patient is immunocomprised
definition editor: YL, YH

question on woman pregnancy
type: Class
subclass of: question for woman
subclass of: Restriction
  on property: is about
  some values from: pregancy
definition: a question textual entity that asks whether a woman is pregnant now
definition editor: YL, YH

current treatment question
type: Class
subclass of: question textual entity
definition: a question textual entity that asks whether the questionee is currently under any treatment
definition editor: YL, YH

cortisone treatment question
type: Class
subclass of: steroids treatment question
definition: a current treatment question that asks whether the questionee is currently under any cortisone treatment
definition editor: YL, YH

X-ray treatment question
type: Class
subclass of: immunocompromisation question
subclass of: current treatment question
definition: a current treatment question that asks whether the questionee is currently under any X-ray treatment
definition editor: YL, YH

question on vaccination in past 4 weeks
type: Class
subclass of: question on past vaccination information
definition: a question textual entity that asks whether the questionee has been vaccinated in the past four weeks
definition editor: YL, YH

question on TB skin test in past 4 weeks
type: Class
subclass of: previous medical precedure question
definition: a question textual entity that asks whether the questionee has conducted a TB skin test in the past four weeks
definition editor: YL, YH

question on blood transfusion in past year
type: Class
subclass of: question on blood or blood product transfusion, or immune (gamma) globulin in past year
definition: a question textual entity that asks whether the questionee has conducted a blood transfusion in the past year
definition editor: YL, YH

question on high-dose steroid therapy for longer than 2 weeks
type: Class
subclass of: steroids treatment question
definition: a current treatment question that asks whether the questionee has been under a high-dose steroid therapy ((prednisone > 20mg/day or equivalent)) for longer than two weeks
definition editor: YL, YH

question on thymus disease
type: Class
subclass of: current health condition question
subclass of: Restriction
  on property: is about
  some values from: thymus gland disease
subclass of: Restriction
  on property: is about vaccination procedure
  some values from: yellow fever vaccination
definition: a question textual entity that asks whether the questionee has a thymus disease
definition editor: YL, YH
comment: This question is needed for yellow fever vaccination

question on current antibiotics usage
type: Class
subclass of: question on current medication usage
definition: a question textual entity that asks whether the questionee is currently taking some antibiotics
definition editor: YL, YH
comment: This question is needed for oral typhoid vaccination

question on thrombocytopenia history
type: Class
subclass of: question on history of thrombocytopenia or thrombocytopenic purpura
subclass of: Restriction
  on property: is about
  some values from: thrombocytopenia
definition: a question textual entity that asks whether the questionee has a history of thrombocytopenia
definition editor: YL, YH

question on current aspirin medication
type: Class
subclass of: question on current antibiotics usage
definition: a question textual entity that asks whether the questionee is currently taking aspirin
definition editor: YL, YH
comment: This question is needed for oral typhoid vaccination

question on asthma or wheezing history
type: Class
subclass of: current health condition question
definition: a question textual entity that asks whether the questionee has a history of asthma or wheezing
definition editor: YL, YH

question on serious nasal condition
type: Class
subclass of: current health condition question
definition: a question textual entity that asks whether the questionee has a serious nasal condition, which makes breathing difficult, such as a very stuffy nose.
definition editor: YL, YH

question on long-term health problem
type: Class
subclass of: question on health condition requires doctor visit
definition: a question textual entity that asks whether the questionee has a a long-term health problem with heart disease, lung disease, asthma, kidney disease, metabolic disease (e.g., diabetes), anemia or other blood disorder.
definition editor: YL, YH

question on long-term heart disease
type: Class
subclass of: question on long-term health problem
subclass of: Restriction
  on property: is about
  some values from: heart disease
definition: a question on long-term health problem that asks whether the questionee has a long-term heart disease
definition editor: YL, YH

question on cancer
type: Class
subclass of: question on cancer, leukemia, AIDS or any other immune system problem
subclass of: Restriction
  on property: is about
  some values from: cancer
definition: a question on long-term health problem that asks whether the questionee has cancer
definition editor: YL, YH

question on leukemia
type: Class
subclass of: question on cancer
subclass of: Restriction
  on property: is about
  some values from: leukemia
definition: a question on long-term health problem that asks whether the questionee has leukemia
definition editor: YL, YH

question on long-term lung disease
type: Class
subclass of: question on long-term health problem
subclass of: Restriction
  on property: is about
  some values from: lung disease
definition: a question on long-term health problem that asks whether the questionee has a long-term lung disease
creator: YL, YH

filled questionnaire for Manitoba Seasonal Influenza and Pheumococcal vaccination consent
type: Class
subclass of: questionare for Manitoba Seasonal Influenza and Pneumococcal vaccination consent
subclass of: Restriction
  on property: is specified output of
  some values from: filling questionnaire
subclass of: Restriction
  on property: has component
  some values from: question whether currently sick
subclass of: Restriction
  on property: has component
  some values from: allergy question
subclass of: Restriction
  on property: has component
  some values from: question whether allergic to egg
subclass of: Restriction
  on property: has component
  some values from: question on reaction after immunization
subclass of: Restriction
  on property: has component
  some values from: question on long-term health problem
subclass of: Restriction
  on property: has component
  some values from: question on any medication affecting blood clotting
definition: a questionnaire that is part of the Manitoba vaccination informed consent form.
creator: YL,YH

question on long-term metabolic disease
type: Class
subclass of: question on long-term health problem
definition: a question on long-term health problem that asks whether the questionee has a long-term metabolic disease

question on long-term diabetes
type: Class
subclass of: question on long-term metabolic disease
subclass of: Restriction
  on property: is about
  some values from: diabetes mellitus
definition: a question on long-term health problem that asks whether the questionee has diabetes
creator: YL,YH

question on anemia
type: Class
subclass of: question on long-term health problem
subclass of: Restriction
  on property: is about
  some values from: anemia
definition: a question on long-term health problem that asks whether the questionee has anemia
creator: YL,YH

question on AIDS
type: Class
subclass of: question on cancer, leukemia, AIDS or any other immune system problem
subclass of: Restriction
  on property: is about
  some values from: acquired immunodeficiency syndrome
definition: a question on long-term health problem that asks whether the questionee has AIDS
creator: YL,YH

prednisone treatment question
type: Class
subclass of: steroids treatment question
definition: a current treatment question that asks whether the questionee is currently under prednisone treatment
creator: YL,YH

steroids treatment question
type: Class
subclass of: current treatment question
subclass of: question on immunosuppressive drug usage
definition: a current treatment question that asks whether the questionee is currently under any steroid treatment
creator: YL,YH

question on current anti-cancer drug usage
type: Class
subclass of: question on cancer treatment
definition: YL,YH
definition: a question textual entity that asks whether the questionee is currently taking any anti-cancer drugs

question on whether fainted or felt dizzy after immunization
type: Class
subclass of: question on reaction after immunization
example of usage: Walgreens immunization informed consent: https://www.walgreens.com/images/pdfs/IN-2225/WAG_VAR_Form_EDIT_10172013_v1.pdf
definition: a question textual entity that asks whether the questionee hasfainted or felt dizzy after a vaccination (i.e., immunization)
creator: YL,YH

question on transfusion of blood products in past year
type: Class
subclass of: question on blood or blood product transfusion, or immune (gamma) globulin in past year
definition: a question textual entity that asks whether the questionee has been given transfusion of blood products in the past year

question on given immune (gamma) globulin in last year
type: Class
subclass of: question on blood or blood product transfusion, or immune (gamma) globulin in past year
definition: a question textual entity that asks whether the questionee has been given immune (gamma) globulin in the past year
creator: YL,YH

question on history of thymoma
type: Class
subclass of: question on thymus disease
subclass of: Restriction
  on property: is about
  some values from: thymoma
definition: a question textual entity that asks whether the questionee has a history of thymoma
creator: YL,YH

question on previous thymectomy procedure
type: Class
subclass of: question on thymus disease
definition: a question textual entity that asks whether the questionee has his/her thymus removed previously
creator: YL, YH

question on current antimalarial medication
type: Class
subclass of: question on current medication usage
definition: a question textual entity that asks whether the questionee is currently under antimalarial medication
creator: YL,YH
comment: asked in prior for using Oral thyphoid vaccine only

question on seizure, brain, or nerve problem
type: Class
subclass of: question on neurological disorder
definition: a question textual entity that asks whether the questionee has experienced any seizure disorder, brain or nerve problem.
definition editor: YL, YH
database_cross_reference: LOINC:66379-9
has synonym: Have you had a seizure, brain, or other nervous system problem?

question on blood or blood product transfusion, or immune (gamma) globulin in past year
type: Class
subclass of: immunocompromisation question
example of usage: Cosco Pharmacy vaccine informed consent form: http://www2.costco.com/Images/Content/misc/PDF/Immunization_consent_form_v2-2012.pdf
definition: a question textual entity that asks whether the questionee has conducted a blood or blood product transfusion, or given a medicine called immune (gamma) globulin, in the past year
definition editor: YL, YH
has synonym: During the past year, have you received a transfusion of blood or blood products, including antibodies?

question on woman pregnancy now or during the next month
type: Class
subclass of: question on woman pregnancy
subclass of: Restriction
  on property: asking vaccination patient
  some values from: female vaccination patient
definition: a question textual entity that asks whether a woman is pregnant now or could become pregrant during the next month
definition editor: YL, YH
database_cross_reference: LOINC:66381-5

question on cancer, leukemia, AIDS or any other immune system problem
type: Class
subclass of: immunocompromisation question
example of usage: Cosco Pharmacy vaccine informed consent form: http://www2.costco.com/Images/Content/misc/PDF/Immunization_consent_form_v2-2012.pdf
definition: a question textual entity that asks whether the questionee has cancer, leukemia, AIDS or any other immune system problem
definition editor: YL, YH

question whether currently sick with a moderate to high fever, vomiting/diarrhea
type: Class
subclass of: question whether currently sick
subclass of: Restriction
  on property: is about
  some values from: diarrhea
subclass of: Restriction
  on property: is about
  some values from: fever
subclass of: Restriction
  on property: is about
  some values from: sickness
example of usage: Walgreens immunization informed consent: https://www.walgreens.com/images/pdfs/IN-2225/WAG_VAR_Form_EDIT_10172013_v1.pdf
definition: a question textual entity that asks whether the questionee is currently sick with a moderate to high fever, vomiting/diarrhea
definition editor: YL, YH

question on any medication affecting blood clotting
type: Class
subclass of: current treatment question
definition: a question textual entity that asks whether the questionee has taken any medication that affects blood clotting
definition editor: YL, YH

question on history of thrombocytopenia or thrombocytopenic purpura
type: Class
subclass of: question on thymus disease
example of usage: Walgreens immunization informed consent: https://www.walgreens.com/images/pdfs/IN-2225/WAG_VAR_Form_EDIT_10172013_v1.pdf
definition: a question textual entity that asks whether the questionee has a history of thrombocytopenia or thrombocytopenic purpura.
creator: YL,YH

questionare for Manitoba Seasonal Influenza and Pneumococcal vaccination consent
type: Class
subclass of: questionnaire for Manitoba vaccination consent
subclass of: Restriction
  on property: has component
  some values from: question whether currently sick
subclass of: Restriction
  on property: has component
  some values from: allergy question
subclass of: Restriction
  on property: has component
  some values from: question on reaction after immunization
subclass of: Restriction
  on property: has component
  some values from: question on long-term health problem
subclass of: Restriction
  on property: is about vaccination procedure
  some values from: Class
    union of: pneumococcal vaccination
    union of: influenza vaccination
definition: a questionnaire that is part of the vaccination informed consent form used for Seasonal Influenza and Phenumococcal vaccination in Manitoba, Canada.

question on long-term kidney disease
type: Class
subclass of: question on long-term health problem
subclass of: Restriction
  on property: is about
  some values from: kidney disease
definition: a question on long-term health problem that asks whether the questionee has a long-term kidney disease

question whether allergic to gentamicin
type: Class
subclass of: question whether allergic to vaccine component

question whether allergic to neomycin
type: Class
subclass of: question whether allergic to vaccine component

question whether allergic to formaldehyde
type: Class
subclass of: question whether allergic to vaccine component

question whether allergic to thimerosal
type: Class
subclass of: question whether allergic to vaccine component

question whether allergic to bovine protein
type: Class
subclass of: question whether allergic to vaccine component

question whether allergic to phenol
type: Class
subclass of: question whether allergic to vaccine component

question whether allergic to polymyxin
type: Class
subclass of: question whether allergic to vaccine component

question whether allergic to gelatin
type: Class
subclass of: question whether allergic to vaccine component

question whether allergic to yeast
type: Class
subclass of: question whether allergic to vaccine component

question whether allergic to baker’s yeast
type: Class
subclass of: question whether allergic to vaccine component

question on vaccination caused disorder
type: Class
subclass of: question on serious reaction after immunization

question on vaccination caused Guillain-Barre syndrome
type: Class
subclass of: question on vaccination caused disorder
subclass of: question on neurological disorder
subclass of: Restriction
  on property: is about
  some values from: Guillain-Barre syndrome
subclass of: Restriction
  on property: is about
  some values from: Guillain-Barre syndrome AE

question on neurological disorder
type: Class
subclass of: question on health condition requires doctor visit

question whether relate to new born infant
type: Class
subclass of: question whether live with immunocompromise person
definition: a question asks the questionee if he or she is taking care of a new born infant or close family member of a new born infant.
creator: YL
has synonym: Are you a parent, family member, or caregiver to a new born infant?

question on asthma history
type: Class
subclass of: question on asthma or wheezing history
subclass of: Restriction
  on property: is about
  some values from: asthma

question on wheezing history
type: Class
subclass of: question on asthma or wheezing history
subclass of: Restriction
  on property: is about
  some values from: wheezing

question on serious reaction after immunization
type: Class
subclass of: question on reaction after immunization
subclass of: Restriction
  on property: is about
  some values from: serious vaccine adverse event

question whether a parent of a new born infant
type: Class
subclass of: question whether a family member of a new born infant

question whether a family member of a new born infant
type: Class
subclass of: question whether relate to new born infant

question whether a care giver of a new born infant
type: Class
subclass of: question whether relate to new born infant

question whether smoke
type: Class
subclass of: current health condition question
has synonym: Do you smoke?

question on past vaccination information
type: Class
subclass of: previous medical precedure question
subclass of: Restriction
  on property: is about
  some values from: Class
    union of: vaccine adverse event
    union of: vaccination
definition: questions that related to patient's vaccination history, warnings received from health provider about a certain vaccination, and adverse event related with a vaccination.
definition editor: YL

question whether had Pneumococcal vaccination
type: Class
subclass of: question on past vaccination information
subclass of: Restriction
  on property: is about
  some values from: pneumococcal vaccination

question whether had Shingles vaccination
type: Class
subclass of: question on past vaccination information
subclass of: Restriction
  on property: is about
  some values from: shingles vaccination

question whether had Tdap vaccination
type: Class
subclass of: question on past vaccination information
subclass of: Restriction
  on property: is about
  some values from: Tdap vaccination

question on antiviral drug usage
type: Class
subclass of: question on current antibiotics usage

question on whether having cut, injury, puncture or open wound
type: Class
subclass of: question on current condition leads to skin break
subclass of: Restriction
  on property: is about vaccination procedure
  some values from: Tdap vaccination
has synonym: Do you have a cut, injury, puncture or open wound that prompted you to get a tetanus shot?

question on COPD
type: Class
subclass of: question on long-term lung disease
subclass of: Restriction
  on property: is about
  some values from: chronic obstructive pulmonary disease

question whether react to triple antibiotic ointment
type: Class
subclass of: allergy question

question on health provider precaution or warning of specific vaccination
type: Class
subclass of: question on past vaccination information
example of usage: Has any physician or other healthcare professional ever cautioned or warned you about receiving certain vaccines or receiving vaccines outside of a medical setting? *
definition: a question asks if the vaccination patient received warning or precaution information from his/her health provider in the past.
definition editor: YL

question about vaccination patient age
type: Class
subclass of: question textual entity

question on long-term liver disease
type: Class
subclass of: question on long-term health problem
subclass of: Restriction
  on property: is about
  some values from: liver disease

question on faintig after vaccination
type: Class
subclass of: question on whether fainted or felt dizzy after immunization
subclass of: Restriction
  on property: is about
  some values from: syncope AE
subclass of: Restriction
  on property: is about
  some values from: faint

question on long-term aspirin therapy
type: Class
subclass of: question on current aspirin medication

question whether patient is older than 18 years old
type: Class
subclass of: question about vaccination patient age
has_exact_synonym: Are you 18 years of age or older?

question on whether having atopic dermatitis
type: Class
subclass of: question on current condition leads to skin break

question whether diagnosed with rheumatoid arthritis
type: Class
subclass of: question on autoimmune disease
subclass of: Restriction
  on property: is about
  some values from: rheumatoid arthritis

question whether diagnosed with ankylosing spondylitis
type: Class
subclass of: question on autoimmune disease
subclass of: Restriction
  on property: is about
  some values from: ankylosing spondylitis

question whether diagnosed with Crohn’s disease
type: Class
subclass of: question on autoimmune disease
subclass of: Restriction
  on property: is about
  some values from: Crohn's disease

question whether diagnosed with Guillain-Barre syndrome
type: Class
subclass of: question on neurological disorder
subclass of: Restriction
  on property: is about
  some values from: Guillain-Barre syndrome
has_exact_synonym: Have you ever been diagnosed as having Guillain-Barre syndrome?

question on health condition requires doctor visit
type: Class
subclass of: current health condition question

question whether had chickenpox
type: Class
subclass of: previous medical precedure question
subclass of: Restriction
  on property: is about
  some values from: chickenpox
definition: a question textual entity that asks the patient whether he/she had diagnosed, treated and recovered from chickenpox, or varicella-zoster virus (VZV) infection.

question on dizzy after vaccination
type: Class
subclass of: question on whether fainted or felt dizzy after immunization
subclass of: Restriction
  on property: is about
  some values from: dizziness AE
subclass of: Restriction
  on property: is about
  some values from: dizziness

question whether bring imunization record card
type: Class
subclass of: question textual entity
example of usage: Did you bring your Immunization Record Card with you?

question on asplenia
type: Class
subclass of: immunocompromisation question
subclass of: Restriction
  on property: is about
  some values from: asplenia

question on CSF leak
type: Class
subclass of: current health condition question
subclass of: Restriction
  on property: is about
  some values from: cerebrospinal fluid leak

question on cochlear implant
type: Class
subclass of: previous medical precedure question
subclass of: Restriction
  on property: is about
  some values from: cochlear implant
created by: YL
creation date: 01/25/2016
comment: The United States Food and Drug Administration reports that cochlear implant recipients may be at higher risk for meningitis.[76] A study of 4,265 American children who received implants between 1997 and 2002 concluded that recipient children had a risk of pneumococcal meningitis more than 30 times greater than that for children in the general population.A later, UK-based, study found that while the incidence of meningitis in implanted adults was significantly higher than the general population, the incidence in children was no different from the general population. As a result, the Centers for Disease Control and Prevention and the Food and Drug Administration both recommend that would-be implant recipients be vaccinated against meningitis prior to surgery.(https://en.wikipedia.org/wiki/Cochlear_implant)

question on weekly injection
type: Class
subclass of: question on current medication usage

question on weekly injection of adalmumab
type: Class
subclass of: question on weekly injection

question on weekly injection of infliximab
type: Class
subclass of: question on weekly injection

question on weekly injection of etanercept
type: Class
subclass of: question on weekly injection

question on home infusion
type: Class
subclass of: current treatment question

question on high-dose methotrexate usage
type: Class
subclass of: current treatment question

question on azathioprine or 6-mercaptopurine usage
type: Class
subclass of: immunocompromisation question
subclass of: current treatment question

question on current anti-malarial medication
type: Class
subclass of: question on current antibiotics usage

question whether recieving aspirin-containing therapy
type: Class
subclass of: current treatment question

5 year and younger vaccination patient
type: Class
subclass of: minor vaccination patient
definition: a minor vaccination patient whose age is younger thatn 5 or equal to 5.

question on fever
type: Class
subclass of: question whether currently sick
subclass of: Restriction
  on property: is about
  some values from: fever
has synonym: Do you have a fever?

question whether allergic to egg products
type: Class
subclass of: question whether allergic to food
subclass of: Restriction
  on property: is about
  some values from: egg allergy

question on stroke leading brain or nerve damage
type: Class
subclass of: question on brain or nerve damage

question on convulsion leading brain or nerve damage
type: Class
subclass of: question on brain or nerve damage

question on brain or nerve damage
type: Class
subclass of: question on seizure, brain, or nerve problem

question on respiratory illness
type: Class
subclass of: question whether currently sick
subclass of: Restriction
  on property: is about
  some values from: respiratory system and chest symptom
definition: question that is about the patient's repiratory system or chest symptoms.
creator: YL

question whether in contact with severely immunocompromised person
type: Class
subclass of: immunocompromisation question

question on woman's possibility of geting pregnant
type: Class
subclass of: question on woman pregnancy
example of usage: Is there a possibility of pregnancy? <used in UM College Park injectable influenza vaccination consent questionnaire> [VICO_0000065]
comment: Pregnancy tests prior to vaccination are not routinely recommended. However, females of childbearing age should be asked about the possibility of their being pregnant prior to being given any vaccine for which pregnancy is a contraindication or precaution. The patient's answer should be documented in the medical record. If the patient is uncertain if she is pregnant, a test should be performed before administering live virus vaccines (measles-mumps-rubella, varicella, live attenuated influenza, yellow fever). (http://www.immunize.org/askexperts/precautions-contraindications.asp)

question on agammaglobulinemia
type: Class
subclass of: immunocompromisation question

question on lymphoma
type: Class
subclass of: question on cancer

question on severe autoimmune disease
type: Class
subclass of: immunocompromisation question

question on SLE
type: Class
subclass of: question on severe autoimmune disease

question on immunosuppressive drug usage
type: Class
subclass of: immunocompromisation question

question on drug usage after organ transplant
type: Class
subclass of: question on immunosuppressive drug usage

question on autoimmune disease drug usage
type: Class
subclass of: question on current medication usage

question on cancer treatment
type: Class
subclass of: current treatment question

question on autoimmune disease
type: Class
subclass of: question on health condition requires doctor visit

question on current condition leads to skin break
type: Class
subclass of: current health condition question

question onwhether having skin rash
type: Class
subclass of: question on current condition leads to skin break

question on whethere having severe burn
type: Class
subclass of: question on current condition leads to skin break

question on whether having impetigo
type: Class
subclass of: question on current condition leads to skin break

question whether having chickenpox
type: Class
subclass of: question on current condition leads to skin break

question on whether having shingles
type: Class
subclass of: question on current condition leads to skin break

question on whether having herpes
type: Class
subclass of: question on current condition leads to skin break

question on whether having psoriasis
type: Class
subclass of: question on current condition leads to skin break

question on whether having severe acne
type: Class
subclass of: question on current condition leads to skin break

question on Darier's disease
type: Class
subclass of: question on current condition leads to skin break

question on whether using steroid eye drop
type: Class
subclass of: steroids treatment question

question on whether diagnosed with myocardial infarction
type: Class
subclass of: question on health condition requires doctor visit

question on whether diagnosed with angina
type: Class
subclass of: question on health condition requires doctor visit

question on whether diagnosed with congestive heart failure
type: Class
subclass of: question on health condition requires doctor visit

question on whether diagnosed with cardiomyopathy
type: Class
subclass of: question on health condition requires doctor visit

question on whether had transient ischemic attack
type: Class
subclass of: question on seizure, brain, or nerve problem

question on chest pain
type: Class
subclass of: question on health condition requires doctor visit

question on shortness of breath when exert
type: Class
subclass of: question on health condition requires doctor visit

question whether allergic to smallpox vaccine
type: Class
subclass of: question whether allergic to vaccine

question whether allergic to polymixin B
type: Class
subclass of: question whether allergic to medication

question whether allergic to streptomycin
type: Class
subclass of: question whether allergic to medication

question whethere allergic to chlortetracycline
type: Class
subclass of: question whether allergic to medication

question whethere allergic to neomycin
type: Class
subclass of: question whether allergic to medication

question on last month's sexual intercourse without effecctive birth control
type: Class
subclass of: question on woman's possibility of geting pregnant

question on sexual intercourse without effecctive birth control after the vaccination
type: Class
subclass of: question on woman's possibility of geting pregnant

question whether live with a child less than one year old
type: Class
subclass of: question whether live with immunocompromise person

question whether current breast-feeding
type: Class
subclass of: question for woman

question for woman
type: Class
subclass of: question textual entity
subclass of: Restriction
  on property: asking vaccination patient
  all values from: female vaccination patient
comment: CDC guidance for pregnancy vaccination http://www.cdc.gov/vaccines/acip/committee/downloads/preg-principles-2008.pdf

question for household memeber of vaccination patient
type: Class
subclass of: question whether live with immunocompromise person

question for close physical contact person of vaccination patient
type: Class
subclass of: question whether live with immunocompromise person

question on current medication usage
type: Class
subclass of: current treatment question
definition: question asks vaccination patient about current drug usage.
definition editor: YL

question whether had organ transplant
type: Class
subclass of: immunocompromisation question

question whether had chickenpox vaccination
type: Class
subclass of: question on past vaccination information

current health condition question
type: Class
subclass of: question textual entity
definition: a question asks if the patient currently has any disease that requies regular doctor's vsisit, long tem disease that impacts current well-being, any symptoms, or feeling ill at the time when he/she is being accessed by vaccination providers.
definition editor: YL

previous medical precedure question
type: Class
subclass of: question textual entity

question whether live with immunocompromise person
type: Class
subclass of: immunocompromisation question

sickness
type: Class
subclass of: quality of a single physical entity
definition: A disposition of ill health, bodily malfunction, or discomfort.
definition editor: YL
NC ithesaurus: http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C107499
creation date: 01/17/2016
database_cross_reference: NCI:C107499

immunocompromised condition
type: Class
subclass of: quality of a single physical entity
definition: A condition or state in which the immune system doesn't have ability to fight infectious disease or medical challenges.
definition editor: YL
creation date: 01/17/2016
comment: A person who has an immunodeficiency of any kind is said to be immunocompromised. An immunocompromised person may be particularly vulnerable to opportunistic infections, in addition to normal infections that could affect everyone. Immunodeficiency may also decrease cancer immunosurveillance. Most cases of immunodeficiency are acquired ("secondary") but some people are born with defects in their immune system, or primary immunodeficiency. Transplant patients take medications to suppress their immune system as an anti-rejection measure, as do some patients suffering from an over-active immune system.

functional asplenia
type: Class
subclass of: asplenia
definition: The organism's spleen doesn't work, or

anatomical asplenia
type: Class
subclass of: asplenia
definition: The organsim is lacking of the spleen as a part of its body.

asplenia
type: Class
subclass of: quality of a single physical entity
definition: Asplenia refers to the absence of normal spleen function and is associated with some serious infection risks.
definition editor: YL
created by: YL
creation date: 01/17/2016
comment: Asplenia refers to the absence of normal spleen function and is associated with some serious infection risks.Asplenia is a form of immunodeficiency, increasing the risk of sepsis from polysaccharide encapsulated bacteria,and can result in overwhelming post splenectomy infection (OPSI), often fatal within a few hours. In particular, patients are at risk from Streptococcus pneumoniae, Haemophilus influenzae, and meningococcus.The risk is elevated as much as 350–fold. (https://en.wikipedia.org/wiki/Asplenia)
comment: Vaccinations It is suggested that splenectomized persons receive the following vaccinations, and ideally prior to planned splenectomy surgery: Pneumococcal polysaccharide vaccine (not before 2 years of age). Children may first need one or more boosters of pneumococcal conjugate vaccine if they did not complete the full childhood series. Haemophilus influenzae type b vaccine, especially if not received in childhood. For adults who have not been previously vaccinated, two doses given two months apart was advised in the new 2006 UK vaccination guidelines (in the UK may be given as a combined Hib/MenC vaccine). Meningococcal conjugate vaccine, especially if not received in adolescence. Previously vaccinated adults require a single booster and non-immunised adults advised, in UK since 2006, to have two doses given two months apart. Children too young for the conjugate vaccine should receive meningococcal polysaccharide vaccine in the interim. Influenza vaccine, every winter, to help prevent getting secondary bacterial infection. (https://en.wikipedia.org/wiki/Asplenia)

acquired immunocompromised condition due to transplant
type: Class
subclass of: sickness
definition: The immunocomproised condition accquired by transplant patients taking medications to suppress their immune system as an anti-rejection measure.
definition editor: YL
creation date: 01/17/2016

cerebrospinal fluid leak
type: Class
subclass of: quality of a single physical entity
definition: A health condition where the fluid surrounding the brain and spinal cord escapes.
definition editor: YL
has_exact_synonym: CSF leak
comment: http://www.adultvaccination.org/professional-resources/pneumo/adult-pneumo-guide-hcp.pdf

cochlear implant
type: Class
subclass of: process
definition: a condition of person who has been surgically implanted an electronic device under the skin behind the ear to provide hearing.
definition editor: YL
comment: The United States Food and Drug Administration reports that cochlear implant recipients may be at higher risk for meningitis.[76] A study of 4,265 American children who received implants between 1997 and 2002 concluded that recipient children had a risk of pneumococcal meningitis more than 30 times greater than that for children in the general population.[77] A later, UK-based, study found that while the incidence of meningitis in implanted adults was significantly higher than the general population, the incidence in children was no different from the general population.[78] As a result, the Centers for Disease Control and Prevention and the Food and Drug Administration both recommend that would-be implant recipients be vaccinated against meningitis prior to surgery.[79]
comment: http://www.adultvaccination.org/professional-resources/pneumo/adult-pneumo-guide-hcp.pdf

serious vaccine adverse event
type: Class
equivalent class: Class
  intersection of: vaccine adverse event
  intersection of: serious adverse event
subclass of: adverse event

pregancy
type: Class
subclass of: process
definition: The state or condition of having a developing embryo or fetus in the body (uterus), after union of an ovum and spermatozoon, during the period from conception to birth.
definition editor: YL
definition source: https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp
NC ithesaurus: NCI:C25742
creation date: 01/25/2016
database_cross_reference: NCI:C25742
database_cross_reference: UMLS CUI:C0032961
database_cross_reference: http://www.ebi.ac.uk/efo/EFO_0002950

burns
type: Class
subclass of: quality of a single physical entity
definition: A burn is an injury to the skin or other organic tissue primarily caused by heat or due to radiation, radioactivity, electricity, friction or contact with chemicals. Skin injuries due to ultraviolet radiation, radioactivity, electricity or chemicals, as well as respiratory damage resulting from smoke inhalation, are also considered to be burns.
definition editor: YL
definition source: WHO (http://www.who.int/violence_injury_prevention/other_injury/burns/en/)
NC ithesaurus: NCI:C34441
database_cross_reference: NCI:C34441

breastfeeding
type: Class
subclass of: process
definition: The feeding of babies and young children with milk from a woman's breast.
definition editor: YL
definition source: https://en.wikipedia.org/wiki/Breastfeeding

smoking behaviour
type: Class
subclass of: process
definition: A person's current tobacco and nicotine consumption as well as his/her smoking history.
definition editor: YL
definition source: https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp
NC ithesaurus: NCI:C19796
creation date: 01/25/2016
database_cross_reference: NCI:C19796
database_cross_reference: UMLS CUI:C1519386
database_cross_reference: http://www.ebi.ac.uk/efo/EFO_0004318

unprotected sexual intercourse
type: Class
subclass of: process
definition: Sexual intercourse without the use of precautions to prevent conception or the transmission of sexually transmitted diseases.
definition editor: YL
definition source: NCI thesaurus
NC ithesaurus: NCI:C88146

part of pathogen organism in vaccine
type: Class
subclass of: vaccine component
definition: 'part of organism in vaccine' is a pathogen component in vaccine that contains only a part of the pathogen organism instead of the whole organism.
definition editor: YH
imported from: vo.owl

vaccine
type: Class
equivalent class: Class
  intersection of: processed material
  intersection of: Restriction
    on property: has function at some time
    some values from: Class
      intersection of: vaccine function
      intersection of: Restriction
        on property: realized in
        some values from: vaccine immunization
  intersection of: Restriction
    on property: is specified output of
    some values from: vaccine preparation
subclass of: processed material
subclass of: Restriction
  on property: contains process
  some values from: vaccination schedule
subclass of: Restriction
  on property: is administered by
  some values from: health care provider
subclass of: Restriction
  on property: capable of
  some values from: vaccine adverse event
subclass of: Restriction
  on property: vaccinated in route
  some values from: route of administration
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: vaccination patient
definition: A vaccine is a processed material with the function that when administered, it prevents or ameliorates a disorder in a target organism by inducing or modifying adaptive immune responses specific to the antigens in the vaccine.
editor note: Many vaccines are developed to protect against infectious pathogens. Many vaccines are also being developed against some diseases such as cancer and autoimmune diseases. Vaccine is developed against a disease. Allergy.
definition editor: YH, BP, BS, MC, LC, XZ, RS
definition editor: a role that inheres in a prepared material entity that is designed to induce protection or treament for a diease or infection in vivo.
imported from: vo.owl
see also: MeSH: D014612

vaccination
type: Class
subclass of: planned process
subclass of: Restriction
  on property: has participant
  some values from: Class
    intersection of: organism
    intersection of: Restriction
      on property: has role at some time
      some values from: vaccine host role
subclass of: Restriction
  on property: has participant at all times
  some values from: vaccine
subclass of: Restriction
  on property: has_specified_output
  some values from: immunization record
definition: a process of administering substance in vivo that involves in adding a vaccine into a host (e.g., human) in vivo with the intent to invoke a protective or therapeutic adaptive immune response.
definition editor: YH, BP
alternative term: vaccine administration
imported from: vo.owl

ACAM2000
type: Class
subclass of: vaccinia virus vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism live attenuated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: percutaneous vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Acambis, Inc
definition editor: YH
imported from: vo.owl
comment: Smallpox (Vaccinia) Vaccine, Live
comment: Trade Name: ACAM2000
see also: CVX: 75

ActHIB
type: Class
subclass of: Haemophilus influenzae serotype b vaccine
subclass of: Restriction
  on property: has part
  some values from: capsular polysaccharide of pathogen organism as vaccine component
subclass of: Restriction
  on property: has part
  some values from: vaccine conjugate protein
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur, SA
definition editor: YH
imported from: vo.owl
comment: Product Name: Haemophilus b Conjugate Vaccine (Tetanus Toxoid Conjugate)
comment: Trade Name: ActHIB
see also: CVX: 48
see also: PMID: 1517908
see also: PMID: 1735812

Adacel
type: Class
subclass of: Diphtheria-Tetanus-Pertussis vaccine
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH
imported from: vo.owl
comment: Product Name: Tetanus Toxoid, Reduced Diphtheria Toxoid and Acellular Pertussis Vaccine, Adsorbed
comment: Trade Name: Adacel
see also: CVX: 115
see also: CVX: 20

Afluria
type: Class
subclass of: Influenza virus vaccine
subclass of: Restriction
  on property: has quality at all times
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: has vaccine contraindication
  some values from: hypersensitivity to chicken egg
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: CSL Limited
subclass of: Restriction
  on property: is_distributed_by
  has value: Merck & Co, Inc
definition editor: YH
definition source: WEB: http://www.cdc.gov/vaccines/pubs/pinkbook/downloads/appendices/B/excipient-table-2.pdf
imported from: vo.owl
comment: Product Name: Influenza Virus Vaccine
comment: Trade Name: Afluria
see also: CVX: 140
see also: CVX: 141

Attenuvax
type: Class
subclass of: Measles virus vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism live attenuated
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Merck & Co, Inc
definition editor: YH
imported from: vo.owl
comment: Product Name: Measles Virus Vaccine, Live
comment: Trade Name: Attenuvax

Bacillus anthracis vaccine
type: Class
subclass of: bacterial vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Bacillus anthracis
definition: A vaccine that protects against Bacillus anthrax that causes anthrax.
definition editor: YH
alternative term: anthrax vaccine
imported from: vo.owl
see also: MeSH: D022122

Biothrax
type: Class
subclass of: Bacillus anthracis vaccine
subclass of: Restriction
  on property: has part
  some values from: protein of pathogen organism as vaccine component
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: BioPort Corp
definition editor: YH
imported from: vo.owl
comment: Product Name: Anthrax Vaccine Adsorbed
comment: Trade Name: Biothrax
see also: CVX: 24

Boostrix
type: Class
subclass of: Diphtheria-Tetanus-Pertussis vaccine
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH
imported from: vo.owl
comment: Product Name: Tetanus Toxoid, Reduced Diphtheria Toxoid and Acellular Pertussis Vaccine, Adsorbed
comment: Trade Name: Boostrix
see also: CVX: 115
see also: CVX: 20

Comvax
type: Class
subclass of: Haemophilus b and Hepatitis B vaccine
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Merck & Co, Inc
definition editor: YH
imported from: vo.owl
comment: Product Name: Haemophilus b Conjugate Vaccine (Meningococcal Protein Conjugate) & Hepatitis B Vaccine (Recombinant)
comment: Trade Name: Comvax
see also: CVX: 51

Daptacel
type: Class
subclass of: Diphtheria-Tetanus-Pertussis vaccine
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
editor note: Vaccine components see http://www.vaccinesafety.edu/components-DTaP.htm
definition editor: YH
imported from: vo.owl
comment: Product Name: Diphtheria & Tetanus Toxoids & Acellular Pertussis Vaccine Adsorbed
comment: Trade Name: DAPTACEL
see also: CVX: 106
see also: CVX: 20

DECAVAC
type: Class
subclass of: Diphtheria-Tetanus vaccine
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur, Inc
definition editor: YH
imported from: vo.owl
comment: Product Name: Tetanus & Diphtheria Toxoids Adsorbed for Adult Use
comment: Trade Name: DECAVAC
see also: CVX: 113

Diphtheria and Tetanus Toxoids Adsorbed USP by Sanofi Pasteur Inc
type: Class
subclass of: Diphtheria-Tetanus vaccine
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur, Inc
definition editor: YH
imported from: vo.owl
comment: Product Name: Diphtheria & Tetanus Toxoids Adsorbed
see also: CVX: 28

Diphtheria and Tetanus Toxoids Adsorbed by Sanofi Pasteur Ltd
type: Class
subclass of: Diphtheria-Tetanus vaccine
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH
imported from: vo.owl
comment: Product Name: Diphtheria & Tetanus Toxoids Adsorbed

Dryvax
type: Class
subclass of: vaccinia virus vaccine
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Wyeth Pharmaceuticals Inc
definition: a vaccinia virus vaccine that is a freeze-dried calf lymph smallpox vaccine, specifically, Dryvax is a live-virus preparation of vaccinia prepared from calf lymph.
editor note: Dryvax is a freeze-dried calf lymph smallpox vaccine. It is the world's oldest smallpox vaccine, created in the late 19th century by American Home Products, a predecessor of Wyeth. By the 1940s, Wyeth was the leading US manufacturer of the vaccine and the only manufacturer by the 1960s. After world health authorities declared smallpox had been eradicated from nature in 1980, Wyeth stopped making the vaccine.
definition editor: YH
definition source: http://en.wikipedia.org/wiki/Dryvax
imported from: vo.owl
comment: Product Name: Smallpox Vaccine, Dried, Calf Lymph Type
comment: Trade Name: Dryvax
see also: CVX: 75

FluLaval
type: Class
subclass of: Influenza virus vaccine
subclass of: Restriction
  on property: has quality at all times
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: ID Biomedical Corp of Quebec
definition editor: YH
imported from: vo.owl
comment: Product Name: Influenza Virus Vaccine, Trivalent, Types A and B
comment: Trade Name: FluLaval
see also: CVX: 141

FluMist
type: Class
subclass of: Influenza virus vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: viral vaccine organism live attenuated
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: vaccinated in route
  some values from: intranasal route by spray
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Influenzavirus B
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: MedImmune Vaccines, Inc
definition editor: YH
definition source: WEB: http://www.cdc.gov/vaccines/pubs/pinkbook/downloads/appendices/B/excipient-table-2.pdf
imported from: vo.owl
comment: Product Name: Influenza Virus Vaccine, Live, Intranasal
comment: Trade Name: FluMist
see also: CVX: 111

Fluarix
type: Class
subclass of: Influenza virus vaccine
subclass of: Restriction
  on property: has quality at all times
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH
imported from: vo.owl
comment: Product Name: Influenza Virus Vaccine, Trivalent, Types A and B
comment: Trade Name: Fluarix
see also: CVX: 140

Fluvirin
type: Class
subclass of: Influenza virus vaccine
subclass of: Restriction
  on property: has quality at all times
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Novartis Vaccines and Diagnostics
definition editor: YH
imported from: vo.owl
comment: Product Name: Influenza Virus Vaccine, Trivalent, Types A and B
comment: Trade Name: Fluvirin
see also: CVX: 140
see also: CVX: 141

Fluzone
type: Class
subclass of: Influenza virus vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH
imported from: vo.owl
comment: Product Name: Influenza Virus Vaccine, Trivalent, Types A and B
comment: Trade Name: Fluzone
see also: CVX: 140
see also: CVX: 141
see also: CVX: 144

Gardasil
type: Class
subclass of: human papillomavirus vaccine
subclass of: Restriction
  on property: has part
  some values from: protein of pathogen organism as vaccine component
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Class
    union of: HPV 11
    union of: HPV 16
    union of: HPV 18
    union of: HPV 6
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Merck & Co, Inc
definition editor: YH
imported from: vo.owl
comment: Product Name: Human Papillomavirus (Types 6, 11, 16, 18) Recombinant Vaccine
comment: Trade Name: Gardasil
see also: CVX: 62

Havrix
type: Class
subclass of: Hepatitis A virus vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH
imported from: vo.owl
comment: Product Name: Hepatitis A Vaccine, Inactivated
comment: Trade Name: Havrix
see also: CVX: 52
see also: CVX: 83

Neisseria meningitidis vaccine
type: Class
equivalent class: Class
  intersection of: bacterial vaccine
  intersection of: Restriction
    on property: vaccine immunization against microbe
    some values from: Neisseria meningitidis
subclass of: bacterial vaccine
definition: A bacterial vaccine that prevents Neisseria meningitidis infection.
definition editor: YH
alternative term: Meningococcal vaccine
imported from: vo.owl
see also: MeSH: D022401

IPOL
type: Class
subclass of: Poliovirus vaccine
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: is_specified_input_of
  some values from: subcutaneous vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur, SA
definition editor: YH
imported from: vo.owl
comment: Product Name: Poliovirus Vaccine Inactivated (Monkey Kidney Cell)
comment: Trade Name: IPOL
see also: CVX: 10

Imovax Rabies (USA)
type: Class
subclass of: Rabies virus vaccine
subclass of: Restriction
  on property: has quality at all times
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur, SA
definition editor: YH
imported from: vo.owl
comment: Product Name: Rabies Vaccine
comment: Trade Name: Imovax
see also: CVX: 18

Infanrix
type: Class
subclass of: Diphtheria-Tetanus-Pertussis vaccine
subclass of: Restriction
  on property: has part
  some values from: protein of pathogen organism as vaccine component
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH
imported from: vo.owl
comment: Product Name: Diphtheria & Tetanus Toxoids & Acellular Pertussis Vaccine Adsorbed
comment: Trade Name: Infanrix
see also: CVX: 20

Influenza Virus Vaccine H5N1 (Sanofi Pasteur Inc)
type: Class
subclass of: Influenza virus vaccine
subclass of: Restriction
  on property: has quality at all times
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: H5N1 subtype
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur, Inc
definition editor: YH
definition source: WEB: http://atomicnewsreview.org/2009/10/22/approval-for-the-arepanrix%E2%84%A2-gsk-vaccine-in-canada/
imported from: vo.owl
comment: Product Name: Influenza Virus Vaccine, H5N1 (for National Stockpile)

JE-Vax
type: Class
subclass of: Japanese encephalitis virus vaccine
subclass of: Restriction
  on property: is_specified_input_of
  some values from: subcutaneous vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Research Foundation for Microbial Diseases of Osaka University
definition editor: YH
imported from: vo.owl
comment: Product Name: Japanese Encephalitis Virus Vaccine Inactivated
comment: Trade Name: JE-Vax
see also: CVX: 39

Kinrix
type: Class
subclass of: Diphtheria-Tetanus-Pertussis-Poliovirus vaccine
subclass of: Restriction
  on property: has part
  some values from: protein of pathogen organism as vaccine component
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH
imported from: vo.owl
comment: Product Name: Diphtheria and Tetanus Toxoids and Acellular Pertussis Adsorbed and Inactivated Poliovirus Vaccine
comment: Trade Name: KINRIX
see also: CVX: 130

M-M-R II
type: Class
subclass of: Measles-Mumps-Rubella vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: viral vaccine organism live attenuated
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Merck & Co, Inc
definition: A Measles-Mumps-Rubella vaccine that is live attenuated and manufactured by Merck & Co, Inc.
definition editor: YH
imported from: vo.owl
comment: Product Name: Measles, Mumps, and Rubella Virus Vaccine, Live
comment: Trade Name: M-M-R II
see also: CVX: 03

M-M-Vax
type: Class
subclass of: Measles-Mumps vaccine
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Merck & Co, Inc
definition: A Measles-Mumps vaccine that is manufactured by Merck and used for human.
definition editor: YH
imported from: vo.owl
comment: Product Name: Measles and Mumps Virus Vaccine, Live
comment: Trade Name: M-M-Vax

Menactra
type: Class
subclass of: Neisseria meningitidis vaccine
subclass of: Restriction
  on property: has part
  some values from: vaccine conjugate protein
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur, Inc
definition editor: YH
alternative term: Meningococcal Polysaccharide (Serogroups A, C, Y and W-135) Diphtheria Toxoid Conjugate Vaccine
definition source: WEB: http://www.fda.gov/BiologicsBloodVaccines/Vaccines/ApprovedProducts/ucm176044.htm
imported from: vo.owl
comment: Product Name: Meningococcal Polysaccharide (Serogroups A, C, Y and W-135) Diphtheria Toxoid Conjugate Vaccine
comment: Trade Name: Menactra
see also: CVX: 114

Menomune A C Y W135
type: Class
subclass of: Neisseria meningitidis vaccine
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur, Inc
definition editor: YH
imported from: vo.owl
comment: Product Name: Meningococcal Polysaccharide Vaccine, Groups A, C, Y and W-135 Combined
comment: Trade Name: Menomune-A/C/Y/W-135
see also: CVX: 32

Meruvax II
type: Class
subclass of: viral vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism live attenuated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: subcutaneous vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Merck & Co, Inc
definition editor: YH
imported from: vo.owl
comment: Product Name: Rubella Virus Vaccine Live
comment: Trade Name: Meruvax II
see also: CVX: 06

Mumpsvax
type: Class
subclass of: viral vaccine
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Merck & Co, Inc
definition editor: YH
imported from: vo.owl
comment: Product Name: Mumps Virus Vaccine Live
comment: Trade Name: Mumpsvax
see also: CVX: 07

Mycobax
type: Class
subclass of: BCG vaccine
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH
imported from: vo.owl
comment: Product Name: BCG Vaccine
comment: Trade Name: Mycobax
see also: CVX: 19

Fluzone High-dose
type: Class
subclass of: Influenza virus vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition: an influenza vaccine that is similar to Fluzone but has high dose.
definition editor: YH
definition source: WEB: http://www.fda.gov/downloads/BiologicsBloodVaccines/Vaccines/ApprovedProducts/UCM305079.pdf
imported from: vo.owl
comment: Product Name: Influenza Virus Vaccine, Trivalent, Types A and B
comment: Trade Name: Fluzone
see also: CVX: 140
see also: CVX: 141
see also: CVX: 144

Influenza A (H1N1) 2009 Monovalent Vaccine (Novartis)
type: Class
subclass of: H1N1 Influenza vaccine
subclass of: Restriction
  on property: has quality at all times
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Novartis Vaccines and Diagnostics
imported from: vo.owl

Pediarix
type: Class
subclass of: Diphtheria-Tetanus-Pertussis-Poliovirus-Hepatitis B vaccine
subclass of: Restriction
  on property: has part
  some values from: protein of pathogen organism as vaccine component
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH
imported from: vo.owl
comment: Product Name: Diphtheria & Tetanus Toxoids & Acellular Pertussis Vaccine Adsorbed, Hepatitis B (recombinant) and Inactivated Poliovirus Vaccine Combined
comment: Trade Name: Pediarix
see also: CVX: 110

PedvaxHIB
type: Class
subclass of: Haemophilus influenzae serotype b vaccine
subclass of: Restriction
  on property: has part
  some values from: vaccine conjugate protein
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Merck & Co, Inc
definition editor: YH
imported from: vo.owl
comment: Product Name: Haemophilus b Conjugate Vaccine (Meningococcal Protein Conjugate)
comment: Trade Name: PedvaxHIB
see also: CVX: 49
see also: PMID: 2791073

Pentacel
type: Class
subclass of: Diphtheria-Tetanus-Pertussis-Poliovirus-Haemophilus b vaccine
subclass of: Restriction
  on property: has part
  some values from: protein of pathogen organism as vaccine component
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH
imported from: vo.owl
comment: Product Name: Diphtheria and Tetanus Toxoids and Acellular Pertussis Adsorbed, Inactivated Poliovirus and Haemophilus b Conjugate (Tetanus Toxoid Conjugate) Vaccine
comment: Trade Name: Pentacel
see also: CVX: 120

Plague Vaccine by Greer Laboratories Inc
type: Class
subclass of: Yersinia pestis vaccine
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Greer Laboratories Inc
definition editor: YH
imported from: vo.owl
comment: Product Name: Plague Vaccine
see also: CVX: 23

Pneumovax 23 (USA)
type: Class
subclass of: polyvalent pneumococcal vaccine
subclass of: Restriction
  on property: has part
  some values from: phenol vaccine preservative
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Merck & Co, Inc
definition editor: YH
imported from: vo.owl
comment: Product Name: Pneumococcal Vaccine, Polyvalent
comment: Trade Name: Pneumovax 23
see also: CVX: 33

Poliovax
type: Class
subclass of: Poliovirus vaccine
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH
imported from: vo.owl
comment: Product Name: Poliovirus Vaccine Inactivated (Human Diploid Cell)
comment: Trade Name: Poliovax

Prevnar (USA)
type: Class
subclass of: polyvalent pneumococcal vaccine
subclass of: Restriction
  on property: has part
  some values from: vaccine conjugate protein
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Wyeth Pharmaceuticals Inc
definition editor: YH
imported from: vo.owl
comment: Product Name: Pneumococcal 7-valent Conjugate Vaccine (Diphtheria CRM197 Protein)
comment: Trade Name: Prevnar
see also: CVX: 100

ProQuad
type: Class
subclass of: Measles-Mumps-Rubella-Vericella vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism live attenuated
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Merck & Co, Inc
definition: A Measles-Mumps-Rubella-Vericella vaccine that is live and manufactured by Merck & Co, Inc.
definition editor: YH
definition source: WEB: http://www.merck.com/product/usa/pi_circulars/p/proquad/proquad_pi.pdf
imported from: vo.owl
comment: Product Name: Measles, Mumps, Rubella and Varicella Virus Vaccine Live
comment: Trade Name: ProQuad
see also: CVX: 94

Fluzone intradermal
type: Class
subclass of: Influenza virus vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intradermal vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH
definition source: WEB: http://www.fda.gov/downloads/BiologicsBloodVaccines/Vaccines/ApprovedProducts/UCM305080.pdf
imported from: vo.owl
comment: Trade Name: Fluzone intradermal

RabAvert
type: Class
subclass of: Rabies virus vaccine
subclass of: Restriction
  on property: has vaccine allergen
  some values from: chicken ovalbumin egg protein allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Novartis Vaccines and Diagnostics
definition editor: YH
definition source: WEB: http://www.cdc.gov/vaccines/pubs/pinkbook/downloads/appendices/B/excipient-table-2.pdf
imported from: vo.owl
comment: Product Name: Rabies Vaccine
comment: Trade Name: RabAvert
see also: CVX: 18

Rabies Vaccine Adsorbed by BioPort Corp
type: Class
subclass of: Rabies virus vaccine
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: BioPort Corp
definition editor: YH
imported from: vo.owl
comment: Product Name: Rabies Vaccine Adsorbed

RotaTeq
type: Class
subclass of: Rotavirus vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism live attenuated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: oral vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Merck & Co, Inc
definition editor: YH
imported from: vo.owl
comment: Product Name: Rotavirus Vaccine, Live, Oral, Pentavalent
comment: Trade Name: RotaTeq
see also: CVX: 116

TENIVAC
type: Class
subclass of: Diphtheria-Tetanus vaccine
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH
imported from: vo.owl
comment: Product Name: Tetanus & Diphtheria Toxoids Adsorbed for Adult Use
comment: Trade Name: TENIVAC

TICE BCG
type: Class
subclass of: cancer vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism live attenuated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intravesical vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Organon Teknika Corp LLC
editor note: Intravesical TICE BCG has been used as a therapy for, and to prevent recurrence of, tumors in patients with carcinoma in situ (CIS) of the urinary bladder, and to prevent recurrence of Stage Ta T1 papillary tumors of the bladder at high risk of recurrence. Refernce URL: http://www.ticebcg.com/Consumer/aboutTice/index.asp
definition editor: YH
imported from: vo.owl
comment: Product Name: BCG Vaccine
comment: Trade Name: TICE BCG
see also: CVX: 19

TYPHIM Vi
type: Class
subclass of: Salmonella typhi vaccine
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur, SA
definition editor: YH
imported from: vo.owl
comment: Product Name: Typhoid Vi Polysaccharide Vaccine
comment: Trade Name: TYPHIM Vi
see also: CVX: 101

Tetanus Toxoid Adsorbed by Aventis Pasteur Inc
type: Class
subclass of: Clostridium tetani vaccine
subclass of: Restriction
  on property: has part
  some values from: thimerosal vaccine preservative
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur, Inc
definition editor: YH
imported from: vo.owl
comment: Product Name: Tetanus Toxoid Adsorbed
see also: CVX: 35

Tetanus and Diphtheria Toxoids Adsorbed by MA Biologic Lab
type: Class
subclass of: Diphtheria-Tetanus vaccine
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Massachusetts Public Health Biologic Lab
definition editor: YH
imported from: vo.owl
comment: Product Name: Tetanus & Diphtheria Toxoids Adsorbed for Adult Use

Tripedia
type: Class
subclass of: Diphtheria-Tetanus-Pertussis vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism live attenuated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur, Inc
definition editor: YH
imported from: vo.owl
comment: Product Name: Diphtheria & Tetanus Toxoids & Acellular Pertussis Vaccine Adsorbed
comment: Trade Name: Tripedia
see also: CVX: 20

Twinrix
type: Class
subclass of: Hepatitis A&B vaccine
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH
imported from: vo.owl
comment: Product Name: Hepatitis A Inactivated and Hepatitis B (Recombinant) Vaccine
comment: Trade Name: Twinrix
see also: CVX: 104

Varivax
type: Class
subclass of: Varicella-zoster virus live vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism live attenuated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: subcutaneous vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Merck & Co, Inc
definition editor: YH
imported from: vo.owl
comment: Product Name: Varicella Virus Vaccine Live
comment: Trade Name: Varivax
see also: CVX: 21

Vivotif (USA)
type: Class
subclass of: Salmonella typhi vaccine
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Berna Biotech, Ltd
definition editor: YH
imported from: vo.owl
comment: Product Name: Typhoid Vaccine Live Oral Ty21a
comment: Trade Name: Vivotif
see also: CVX: 25

YF-Vax
type: Class
subclass of: Yellow fever virus vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism live attenuated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: subcutaneous vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur, Inc
definition editor: YH
definition source: http://www.cdc.gov/vaccines/pubs/pinkbook/downloads/appendices/B/excipient-table-2.pdf
imported from: vo.owl
comment: Product Name: Yellow Fever Vaccine
comment: Trade Name: YF-Vax
see also: CVX: 37

Yellow fever virus vaccine
type: Class
subclass of: viral vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Yellow fever virus
definition: A viral vaccine that protects against infection with Yellow fever virus.
definition editor: YH
imported from: vo.owl
see also: MeSH: D022341

Zostavax
type: Class
subclass of: Varicella-zoster virus live vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism live attenuated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: subcutaneous vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Merck & Co, Inc
definition editor: YH
imported from: vo.owl
comment: Product Name: Zoster Vaccine, Live, (Oka/Merck)
comment: Trade Name: Zostavax
see also: CVX: 121

vaccine adjuvant role
type: Class
subclass of: vaccine additive role
definition: an adjuvant role that inheres in a vaccine component which is added as part of a vaccine and induces enhanced adaptive immune response to the vaccine antigen.
definition editor: YH
imported from: vo.owl

Influenza A (H1N1) 2009 Monovalent Vaccine (Sanofi Pasteur)
type: Class
subclass of: H1N1 Influenza vaccine
subclass of: Restriction
  on property: has quality at all times
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
imported from: vo.owl

bacterial vaccine
type: Class
equivalent class: Class
  intersection of: vaccine
  intersection of: Restriction
    on property: vaccine immunization against microbe
    some values from: Bacteria
definition: A vaccine that targets against a bacterial disease.
definition editor: YH
imported from: vo.owl
see also: MeSH: D001428

vaccine organism live attenuated
type: Class
subclass of: quality of a single physical entity
definition: a virulence of vaccine organism that shows an attenuated pheontype of the organism as the major component of a vaccine.
definition editor: YH
imported from: vo.owl

cancer vaccine
type: Class
subclass of: vaccine
subclass of: Restriction
  on property: vaccine immunization against disase
  some values from: cancer
definition: A vaccine that prevents or treats cancer. It is produced using the patient's own whole tumor cells as the source of antigens, or using tumor-specific antigens, often recombinantly produced.
definition editor: YH
alternative term: neoplasm vaccine
alternative term: tumor vaccine
imported from: vo.owl
see also: MeSH: D019496

vaccine component
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: part of
    some values from: vaccine
definition: a processed material that is output of the vaccine preparation and part of a vaccine.
definition editor: YH
alternative term: cardinal part of vaccine
alternative term: vaccine ingredient
imported from: vo.owl

vaccine organism inactivated
type: Class
subclass of: quality of a single physical entity
definition: an organismal quality of a whole organism vaccine where the whole organism is inactivated/killed and lacks the capability of replication.
definition editor: YH
alternative term: vaccine organism killed
imported from: vo.owl

hypersensitivity to chicken egg
type: Class
subclass of: disposition
definition editor: YH
imported from: vo.owl

vaccine function
type: Class
equivalent class: Class
  union of: preventive vaccine function
  union of: therapeutic vaccine function
subclass of: disposition
definition: vaccine function is a function that inheres in a vaccine that induces protective immune response against a disease. It is realized in the immunization process in the host.
editor note: PERSPN: Oliver He: There has been hot discussion about whether we use 'vaccine function' or 'vaccine role'. Vaccine role may not be the good term to use. Vaccine is designed to be 'vaccine', so it should be vaccine function. One special case is cowpox virus. The cowpox virus can be mixed with some liquid like water and used as a smallpox vaccine. In this case, people often say: the cowpox virus has a 'vaccine role'. However, the cowpox virus vaccine is a processed material of a mix of the virus with water. The virus is a virus, it is not a vaccine per se. Therefore, vaccine role may not be an accurate term.
definition editor: YH, MC, XZ, and AR
imported from: vo.owl

company
type: Class
subclass of: organization
definition editor: YH
imported from: vo.owl

intramuscular route
type: Class
subclass of: route of administration
subclass of: Restriction
  on property: located in at some time
  some values from: skeletal muscle tissue
definition: a route of administration that inject the material(such as vaccines, allergens) directly into a muscle.
definition editor: YH,YL
alternative term: intramuscular injection route
imported from: vo.owl
has synonym: I.M.

intranasal route
type: Class
subclass of: route of administration
subclass of: Restriction
  on property: located in at all times
  some values from: nose structure
definition: rounte of administration that located in nose.
definition editor: YH
imported from: vo.owl
has synonym: I.N.

intranasal route by spray
type: Class
subclass of: intranasal route
definition editor: YH
imported from: vo.owl

Influenza A (H1N1) 2009 Monovalent Vaccine (CSL Limited)
type: Class
subclass of: H1N1 Influenza vaccine
subclass of: Restriction
  on property: has quality at all times
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: CSL Limited
imported from: vo.owl

vaccine additive role
type: Class
subclass of: vaccine component role
definition editor: YL,YH
definition source: Page 73, Chapter 6, Vaccine, 5th Edition. EXPERT CONSULT by Plotkin SA., et. al. 2008
definition source: a role inheres in a material entity, that has been added into a vaccine's formulation by the manufacture for a specific purpose. For example: adjuvant to enhance the effect of immunogen, perservatives, stablizers and those materials added for affecting PH and isotonicity.
imported from: vo.owl

Menactra injection 0.5mL vial
type: Class
subclass of: Menactra
subclass of: Restriction
  on property: has part
  some values from: vaccine conjugate protein
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur, Inc
definition editor: YH
alternative term: Meningococcal Polysaccharide (Serogroups A, C, Y and W-135) Diphtheria Toxoid Conjugate Vaccine injection 0.5mL vial
definition source: WEB: http://www.fda.gov/BiologicsBloodVaccines/Vaccines/ApprovedProducts/ucm176044.htm
imported from: vo.owl
comment: Product Name: Meningococcal Polysaccharide (Serogroups A, C, Y and W-135) Diphtheria Toxoid Conjugate Vaccine injection 0.5mL vial
comment: Trade Name: Menactra
see also: SNOMEDCT: 416532007; UMLS_CUI:C1563043

Varicella-zoster virus live vaccine
type: Class
subclass of: Varicella-zoster virus vaccine
definition: a Varicella-zoster virus vaccine that is live attenuated.
definition editor: YH
imported from: vo.owl
see also: SNOMEDCT: 412530002; ULMS_CUI: C0770687

polyvalent pneumococcal vaccine
type: Class
subclass of: Streptococcus pneumoniae vaccine
subclass of: Restriction
  on property: has part
  some values from: phenol vaccine preservative
subclass of: Restriction
  on property: has part
  some values from: capsular polysaccharide of pathogen organism as vaccine component
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition: a pneumococcal vaccine that is formed using polyvalent polysaccharides
definition editor: YH
definition source: WEB: http://www.who.int/vaccines/en/pneumococcus.shtml
imported from: vo.owl
comment: The most common form of the polyvalent pneumococcal vaccine is called the protein-polysaccharide combinations which is known as conjugate vaccines and contain 7–11 selected polysaccharides bound to a protein carrier. The protein-polysaccharide combinations are able to induce a T-cell dependent immune response. These vaccines are likely to be protective even in children under two years of age, and may reduce pneumococcal transmission through a herd effect.

vaccinia virus vaccine
type: Class
subclass of: Smallpox virus vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: viral vaccine organism live attenuated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: percutaneous vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Acambis, Inc
definition editor: YH
definition source: WEB: http://en.wikipedia.org/wiki/Vaccinia
imported from: vo.owl
definition: a Smallpox virus vaccine that uses vaccinia virus
comment: Vaccinia virus is well known for its role as a vaccine that helped eradicate the smallpox disease, making it the first human disease to be successfully eradicated by science.

preventive vaccine function
type: Class
subclass of: vaccine function
subclass of: Restriction
  on property: realized in
  some values from: vaccination
subclass of: Restriction
  on property: realized in
  some values from: induction of adaptive immune response to antigen
subclass of: Restriction
  on property: realized in
  some values from: disorder prevention
definition: preventive vaccine function is a vaccine function realized by the process of vaccination and leading to induction of an adaptive immune response to the antigens in a vaccine, which protects against a specific disorder.
definition editor: YH
alternative term: prophylactic vaccine function
imported from: vo.owl

protein of pathogen organism as vaccine component
type: Class
subclass of: part of pathogen organism in vaccine
definition editor: YH
imported from: vo.owl

chicken ovalbumin egg protein allergen
type: Class
subclass of: vaccine allergen
definition editor: YH
definition editor: a chicken egg protein allergen where the protein allergen is ovalbumin, the main protein found in egg write, making up 60-65% of the total protein.
definition source: WEB: http://en.wikipedia.org/wiki/Ovalbumin
imported from: vo.owl

typhoid live oral vaccine
type: Class
subclass of: Salmonella typhi vaccine
definition editor: YH
definition editor: a S. typhi vaccine that is live and orally administerred
imported from: vo.owl
see also: UMLS_CUI: C0359940; SNOMEDCT: 346696005

active immunization
type: Class
subclass of: process
definition: Active immunization is an immunization process that entails the introduction of a foreign molecule into the body, which causes the body itself to generate adaptive immunity against the target.
definition editor: YH, XZ
definition source: WEB: http://en.wikipedia.org/wiki/Immunization
imported from: vo.owl

vaccine immunization
type: Class
subclass of: active immunization
subclass of: Restriction
  on property: realizes
  some values from: Class
    intersection of: vaccine host role
    intersection of: Restriction
      on property: inheres_in
      some values from: organism
subclass of: Restriction
  on property: has_specified_input
  some values from: vaccine
subclass of: Restriction
  on property: achieves_planned_objective
  some values from: immunization objective
definition: artificial active immunization is an active immunization that occurs when a person or animal is vaccinated with a specific vaccine.
definition editor: YH, XZ
alternative term: artificial active immunization
definition source: WEB: http://en.wikipedia.org/wiki/Immunization
imported from: vo.owl

induction of adaptive immune response to antigen
type: Class
subclass of: active immunization
definition: induction of adaptive immune response to antigen is an active immunization process that results in induction of adaptive immune response to some antigens, for example, in a vaccine.
definition editor: YH, XZ
imported from: vo.owl

disorder prevention
type: Class
subclass of: process
definition: disorder prevention is a processual entity that prevents a disorder that is the physical basis of a disease.
definition editor: YH, XZ
imported from: vo.owl

disorder treatment
type: Class
subclass of: process
definition: disorder treatment is a processual entity that leads to treat a disorder that is the physical basis of a disease.
definition editor: YH, XZ
imported from: vo.owl

modification of adaptive immune response to antigen
type: Class
subclass of: active immunization
definition: modification of adaptive immune response to antigen is an active immunization process that results in modification of an adaptive immune response to some antigens, for example, in a therapeutic vaccine.
definition editor: YH, XZ
imported from: vo.owl

subcutaneous route
type: Class
subclass of: route of administration
subclass of: Restriction
  on property: located in at some time
  some values from: hypodermis
definition: a route of administration that is loacted in the hypodermis (subcutaneous tissue) region.
definition editor: YL
imported from: vo.owl
creator: YH
has synonym: S.C.

human vaccinee
type: Class
subclass of: Homo sapiens
subclass of: Restriction
  on property: part of
  some values from: human vaccinee
subclass of: Restriction
  on property: has role at all times
  some values from: vaccine host role
definition: a human who has been administrated a vaccine
definition: a vaccinee that is a human being
imported from: vo.owl

therapeutic vaccine function
type: Class
subclass of: vaccine function
subclass of: Class
  union of: Restriction
    on property: realized in
    some values from: induction of adaptive immune response to antigen
  union of: Restriction
    on property: realized in
    some values from: modification of adaptive immune response to antigen
subclass of: Restriction
  on property: realized in
  some values from: vaccination
subclass of: Restriction
  on property: realized in
  some values from: disorder treatment
definition: The therapeutic vaccine function is a function realized by the process of vaccination and leading to induction of an adaptive immune response to the antigens in a vaccine, which ameliorates a specific disorder.
definition editor: YH
imported from: vo.owl

route of administration
type: Class
subclass of: immaterial entity
subclass of: Restriction
  on property: located in at all times
  some values from: gross anatomical part
definition: a path that is located in gross anatomical part of an organism (e.g., human) and is used for administering a vaccine, a drug, fluid, poison, or other substance into the body.
editor note: CDISC has a codelist: Rout of Administration. Desription from CDISC: The course by which a substance was administered in order to reach the site of action in the body. CDISC_SDTM_Route_of_Administration_Terminology
definition editor: YH,YL
definition source: http://en.wikipedia.org/wiki/Route_of_administration
imported from: vo.owl

thimerosal vaccine preservative
type: Class
subclass of: vaccine preservative
subclass of: Restriction
  on property: has part
  some values from: thimerosal
definition: vaccine preservative that has thimerosal as part.
definition editor: YH
imported from: vo.owl

H1N1 Influenza vaccine
type: Class
equivalent class: Class
  intersection of: Influenza virus vaccine
  intersection of: Restriction
    on property: vaccine immunization against microbe
    some values from: H1N1 subtype
subclass of: Influenza virus vaccine
definition: H1N1 Influenza vaccine is an Influenza virus vaccine that is used to vaccinate against H1N1 Influenza subtype vaccine.
definition editor: YH
imported from: vo.owl

vaccine adjuvant
type: Class
equivalent class: Class
  intersection of: vaccine component
  intersection of: Restriction
    on property: has role at some time
    some values from: vaccine adjuvant role
definition: a vaccine component that is chemical substance added to vaccine and enhance and direct immune response to protective antigen. Many of vaccine adjuvants cause a range of serious side-effects.
definition editor: YH
imported from: vo.owl

immunization objective
type: Class
subclass of: objective specification
definition: immunization objective is the specification of an objective to achieve immunization.
definition editor: YH, XZ
definition source: WEB: http://en.wikipedia.org/wiki/Immunization
imported from: vo.owl

vaccine preparation
type: Class
subclass of: planned process
subclass of: Restriction
  on property: realizes
  some values from: Restriction
    on property: concretizes at some time
    some values from: vaccine target specification
subclass of: Restriction
  on property: has_specified_output
  some values from: vaccine
definition: vaccine preparation is a manufacturing process to produce a vaccine.
definition editor: YH, BP
alternative term: vaccine generation
alternative term: vaccine production
imported from: vo.owl

viral vaccine
type: Class
equivalent class: Class
  intersection of: vaccine
  intersection of: Restriction
    on property: vaccine immunization against microbe
    some values from: Viruses
definition: A vaccine that targets against a viral disease.
definition editor: YH
imported from: vo.owl
see also: MeSH: D014765

vaccine role
type: Class
subclass of: role
definition editor: YH
definition editor: a role that inheres in a prepared material entity that is designed to induce protection or treatment for a disease or infection.
imported from: vo.owl

vaccine component role
type: Class
subclass of: role
subclass of: Restriction
  on property: inheres in at all times
  some values from: Restriction
    on property: part of
    some values from: vaccine
definition editor: YH
definition editor: a role that inheres in a material entity that becomes an ingredient of a vaccine.
imported from: vo.owl

conjugate vaccine role
type: Class
subclass of: vaccine role
definition: a vaccine role that indicates the vaccine being a conjugate vaccine.
definition editor: YH
imported from: vo.owl

licensed vaccine role
type: Class
subclass of: vaccine role
definition: licensed vaccine role is a regulation-assigned role that indicates that a vaccine obtains official approval for commercial production and selling on the market.
definition editor: YH
imported from: vo.owl

Clostridium vaccine
type: Class
subclass of: bacterial vaccine
definition: A bacterial vaccine that protects against infection with Clostridium spp.
definition editor: YH
imported from: vo.owl

Clostridium tetani vaccine
type: Class
equivalent class: Class
  intersection of: Clostridium vaccine
  intersection of: Restriction
    on property: vaccine immunization against microbe
    some values from: Clostridium tetani
definition: a Clostridium vaccine that protects against infection with Clostridium tetani that causes tenanus.
definition editor: YH
alternative term: tetanus vaccine
imported from: vo.owl

Influenza virus vaccine
type: Class
subclass of: viral vaccine
definition: A viral vaccine that protects against infection with influenza virus.
definition editor: YH
alternative term: Influenza vaccine
imported from: vo.owl
see also: MeSH: D007252; UMLS_CUI: C0021403; SNOMEDCT: 46233009

Hepatitis B virus vaccine
type: Class
equivalent class: Class
  intersection of: viral vaccine
  intersection of: Restriction
    on property: vaccine immunization against microbe
    some values from: Hepatitis B virus
subclass of: viral vaccine
definition: A viral vaccine that protects against infection with Hepatitis B virus.
definition editor: YH
imported from: vo.owl
see also: MeSH: D017325

Hepatitis A virus vaccine
type: Class
equivalent class: Class
  intersection of: viral vaccine
  intersection of: Restriction
    on property: vaccine immunization against microbe
    some values from: Hepatitis A virus
subclass of: viral vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Hepatitis A virus
definition: A viral vaccine that protects against infection with Hepatitis A virus.
definition editor: YH
imported from: vo.owl
see also: MeSH: D022362

Yersinia pestis vaccine
type: Class
subclass of: bacterial vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Yersinia pestis
definition: A bacteria vaccine that prevents against Yersinia pestis infection that causes plague.
definition editor: YH
alternative term: Plague vaccine
imported from: vo.owl
see also: MeSH: D010931; SNOMEDCT: 11866009; UMLS_CUI:C0032066

Rabies virus vaccine
type: Class
equivalent class: Class
  intersection of: viral vaccine
  intersection of: Restriction
    on property: vaccine immunization against microbe
    some values from: Rabies virus
subclass of: viral vaccine
definition: A viral vaccine that protects against infection with Rabies virus.
definition editor: YH
imported from: vo.owl
see also: MeSH: D011819; SNOMEDCT: 333606008; UMLS_CUI:C0034496

Smallpox virus vaccine
type: Class
subclass of: viral vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Variola virus
definition: A viral vaccine that protects against infection with Smallpox virus.
definition editor: YH
imported from: vo.owl
see also: MeSH: D012900

Measles virus vaccine
type: Class
subclass of: viral vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Measles virus
definition: A viral vaccine that protects against infection with Measles virus.
definition editor: YH
alternative term: Measles vaccine
imported from: vo.owl
see also: MeSH: D008458

Rotavirus vaccine
type: Class
equivalent class: Class
  intersection of: viral vaccine
  intersection of: Restriction
    on property: vaccine immunization against microbe
    some values from: Rotavirus
subclass of: viral vaccine
definition: A viral vaccine that protects against infection with Rotavirus.
definition editor: YH
imported from: vo.owl
see also: MeSH: D022243; UMLS_CUI: C0597418; SNOMEDCT: 116077000

Haemophilus vaccine
type: Class
subclass of: vaccine
definition: A bacterial vaccine that protects against infection with Haemophilus.
definition editor: YH
imported from: vo.owl
see also: MeSH: D018073

Haemophilus influenzae serotype b vaccine
type: Class
equivalent class: Class
  intersection of: Haemophilus influenzae vaccine
  intersection of: Restriction
    on property: vaccine immunization against microbe
    some values from: Haemophilus influenzae serotype b
definition editor: YH
alternative term: Haemophilus b vaccine
imported from: vo.owl

Poliovirus vaccine
type: Class
subclass of: viral vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Dintheria
definition: A viral vaccine that protects against infection with Poliovirus.
definition editor: YH
imported from: vo.owl
see also: MeSH: D023321

Japanese encephalitis virus vaccine
type: Class
subclass of: viral vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Japanese encephalitis virus
definition: A viral vaccine that protects against infection with Japanese encephalitis virus.
definition editor: YH
alternative term: Japanese encephalitis vaccine
imported from: vo.owl
see also: MeSH: D022321

human papillomavirus vaccine
type: Class
subclass of: cancer vaccine
subclass of: viral vaccine
definition: a vaccine against human papillomavirus infection
definition editor: YH
imported from: vo.owl
see also: UMLS_CUI: C1512511; SNOMEDCT: 424519000

Varicella-zoster virus vaccine
type: Class
subclass of: viral vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Human herpesvirus 3
definition: a Herpesvirus vaccine that is used against Varicella-zoster virus infection.
definition editor: YH
alternative term: chickenpox virus vaccine
imported from: vo.owl
see also: UMLS_CUI: C0078048; SNOMEDCT: 108729007

Salmonella typhi vaccine
type: Class
subclass of: bacterial vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Salmonella enterica subsp. enterica serovar Typhi
definition: a Salmonella vaccine against typhoid fever (or called typoid), caused by Salmonella enterica enterica, serovar Typhi.
definition editor: YH
imported from: vo.owl
alternative term: typhoid vaccine

Streptococcus pneumoniae vaccine
type: Class
subclass of: bacterial vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Streptococcus pneumoniae
definition: a Streptococcal vaccine that is used against S. pneumoniae infection, which causes pneumococcal diseases.
definition editor: YH
alternative term: pneumococcal vaccine
definition source: WEB: http://www.who.int/vaccines/en/pneumococcus.shtml
imported from: vo.owl

vaccine allergen disposition
type: Class
subclass of: disposition
definition editor: YH
imported from: vo.owl

Measles-Mumps-Rubella vaccine
type: Class
subclass of: Measles-Mumps vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Rubella virus
definition: A Measles-Mumps vaccine that also protects against infection with Rubella virus.
definition editor: YH
alternative term: MMR
imported from: vo.owl
comment: MMR is usually live attenuated.

Diphtheria-Tetanus vaccine
type: Class
subclass of: Corynebacterium diphtheriae vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Clostridium tetani
definition: A Corynebacterium diphtheriae vaccine that also protect against infection with Clostridium tetani.
definition editor: YH
imported from: vo.owl

Corynebacterium diphtheriae vaccine
type: Class
subclass of: bacterial vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Corynebacterium diphtheriae
definition: A bacterial vaccine that protects against infection with Corynebacterium diphtheriae that causes Diphtheria.
definition editor: YH
alternative term: diphtheria vaccine
imported from: vo.owl

Measles-Mumps vaccine
type: Class
subclass of: Measles virus vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Mumps virus
definition: A Measles virus vaccine that also protects against infection with Mumps virus.
definition editor: YH
imported from: vo.owl

Measles-Mumps-Rubella-Vericella vaccine
type: Class
subclass of: Measles-Mumps-Rubella vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Human herpesvirus 3
definition: A Measles-Mumps-Rubella vaccine that also protects against Vericella.
definition editor: YH
imported from: vo.owl

Diphtheria-Tetanus-Pertussis vaccine
type: Class
subclass of: Diphtheria-Tetanus vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Bordetella pertussis
definition editor: YH
alternative term: DTP vaccine
alternative term: DTaP vaccine
imported from: vo.owl
see also: UMLS_CUI: C0012559; SNOMEDCT: 421245007

Haemophilus influenzae serotype b
type: Class
subclass of: Gammaproteobacteria
definition editor: YH
imported from: vo.owl

Diphtheria-Tetanus-Pertussis-Poliovirus vaccine
type: Class
subclass of: Diphtheria-Tetanus-Poliovirus vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Dintheria
definition editor: YH
imported from: vo.owl

Diphtheria-Tetanus-Pertussis-Poliovirus-Hepatitis B vaccine
type: Class
subclass of: Diphtheria-Tetanus-Pertussis-Poliovirus vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Hepatitis B virus
definition editor: YH
imported from: vo.owl

Diphtheria-Tetanus-Pertussis-Poliovirus-Haemophilus b vaccine
type: Class
subclass of: Diphtheria-Tetanus-Pertussis-Poliovirus vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Haemophilus influenzae serotype b
definition editor: YH
imported from: vo.owl

Hepatitis A&B vaccine
type: Class
subclass of: viral vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Hepatitis B virus
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Hepatitis A virus
definition editor: YH
imported from: vo.owl

Haemophilus b and Hepatitis B vaccine
type: Class
equivalent class: Class
  intersection of: Hepatitis B virus vaccine
  intersection of: Restriction
    on property: vaccine immunization against microbe
    some values from: Haemophilus influenzae serotype b
definition: a viral vaccine against Hepatitis B virus and at the same time against bacterial H. influenzae serotype b.
definition editor: YH
imported from: vo.owl

Vibrio cholerae vaccine
type: Class
subclass of: bacterial vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Vibrio cholerae
definition: A bacterial vaccine that prevents infection with Vibrio cholera.
definition editor: YH
alternative term: cholera vaccine
imported from: vo.owl
see also: MeSH: D022121

BCG vaccine
type: Class
subclass of: bacterial vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: bacterial vaccine organism live attenuated
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
definition: BCG Vaccine is a Mycobacterium tuberculosis vaccine that is a live attenuated strain of Mycobacterium bovis (Bacillus Calmette Guerin; BCG).
definition editor: YH
alternative term: Bacillus Calmette Guerin
imported from: vo.owl
see also: CVX: 19

USA licensed vaccine role
type: Class
subclass of: licensed vaccine role
definition: a licensed vaccine role that indicates the vaccine occurs in USA.
definition editor: YH
imported from: vo.owl

vaccine preservative
type: Class
equivalent class: Class
  intersection of: vaccine component
  intersection of: Restriction
    on property: has role at some time
    some values from: vaccine preservative role
definition editor: YH
alternative term: antimicrobial agent in vaccine
imported from: vo.owl

vaccine stabilizer
type: Class
equivalent class: Class
  intersection of: vaccine component
  intersection of: Restriction
    on property: has role at some time
    some values from: vaccine stabilizer role
definition: a vaccine additive that helps to protect the vaccine from adverse conditions such as the freeze-drying process (for those vaccines that are freeze-dried) or heat.
definition editor: YH
definition source: Finn TM and Egan W, in Vaccines fifth edition, 2008. Page 75.
imported from: vo.owl

cell culture residual in vaccine
type: Class
subclass of: vaccine component
definition: a vaccine residual that is generatead from cell culture for vaccine preparation. Examples include: antibiotics, sensitizing substances, bacterial and cellular residuals, and adventitious agents.
definition editor: YH
definition source: Finn TM and Egan W, in Vaccines fifth edition, 2008. Page 78-81.
imported from: vo.owl

Canada licensed vaccine role
type: Class
subclass of: licensed vaccine role
definition: a licensed status that occurs in Canada.
definition editor: YH
imported from: vo.owl

Fluviral S/F
type: Class
subclass of: Influenza virus vaccine
subclass of: Restriction
  on property: has quality at all times
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH
imported from: vo.owl

Influvac
type: Class
subclass of: Influenza virus vaccine
subclass of: Restriction
  on property: has quality at all times
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Solvay Pharmaceuticals
definition: Influvac is an Influenza virus vaccine that is manufactured by Solvay Pharma.
definition editor: YH
imported from: vo.owl

Vaxigrip
type: Class
subclass of: Influenza virus vaccine
subclass of: Restriction
  on property: has part
  some values from: formaldehyde
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition: Vaxigrip is an Influenza virus vaccine that is manufactured by 'Sanofi Pasteur Limited.
definition editor: YH, Melanie
imported from: vo.owl

aluminum vaccine adjuvant
type: Class
subclass of: vaccine adjuvant
definition: a mineral salt vaccine adjuvant that is composed of aluminum salt.
definition editor: Aluminum vaccine adjuvant is a vaccine adjuvant that is composed of some aluminum compound.
definition editor: YH
imported from: vo.owl

vaccine preservative role
type: Class
subclass of: vaccine additive role
definition: a role inhers in a vaccine component that when added into a vccine formmulation, it can prevent the growth of bacteria or fungi that inadvertently may be introduced into the vaccine during administrating process or the manufacturing process.
definition editor: YH,YL
definition source: P73 Chapter 6, Vaccine 5th edition by Plotkin, S. et al.
imported from: vo.owl
comment: The CFR requires that, with certain defined exceptions, preservatives must be added to mulitdose vials of vaccine. (P73 Chapter 6, Vaccine 5th edition by Plotkin, S. et al.)

oral route
type: Class
subclass of: route of administration
subclass of: Restriction
  on property: located in at all times
  some values from: mouth
definition editor: YH
definition editor: a route of administration that located in the mouth
imported from: vo.owl

intradermal route
type: Class
subclass of: route of administration
subclass of: Restriction
  on property: located in at some time
  some values from: skin of body
definition: a route of administration that inject the material(such as vaccines, allergens) into the skin itself.
definition editor: YH,YL
alternative term: intradermal injection route
imported from: vo.owl
has synonym: I.D.

phenol vaccine preservative
type: Class
subclass of: vaccine preservative
definition editor: YH
imported from: vo.owl

phenoxy ethanol vaccine preservative
type: Class
subclass of: vaccine preservative
subclass of: Restriction
  on property: has role at some time
  some values from: vaccine preservative role
definition editor: YH
imported from: vo.owl

vaccine allergen
type: Class
equivalent class: Class
  intersection of: material entity
  intersection of: Restriction
    on property: has disposition
    some values from: vaccine allergen disposition
definition: vaccine allergen is a material entity that is capable of stimulating a type-I hypersensitivity reaction in atopic individuals who has been vaccinated with a vaccine.
definition editor: YH, ZX
definition source: WEB: http://www.cdc.gov/vaccines/pubs/pinkbook/downloads/appendices/B/excipient-table-2.pdf
imported from: vo.owl

latex vaccine allergen
type: Class
subclass of: vaccine allergen
definition editor: YH, ZX
imported from: vo.owl

gelatin vaccine allergen
type: Class
subclass of: vaccine allergen
definition editor: YH, ZX
imported from: vo.owl

protamine sulfate vaccine allergen
type: Class
subclass of: vaccine allergen
definition editor: YH, ZX
imported from: vo.owl

bovine albumin cell culture residual in vaccine
type: Class
subclass of: cell culture residual in vaccine
definition: a cell culture residual in vaccine that is bovine albumin.
definition editor: YH, ZX
imported from: vo.owl

bovine serum cell culture residual in vaccine
type: Class
subclass of: cell culture residual in vaccine
definition: a cell culture residual in vaccine that is bovine serum.
definition editor: YH
imported from: vo.owl

monosodium glutamate stabliizer
type: Class
subclass of: vaccine stabilizer
subclass of: Restriction
  on property: has part
  some values from: monosodium glutamate
definition: a vaccine stablizer that is based on monosodium glutamate.
definition editor: YL,YH
alternative term: C5H8NNaO4
imported from: vo.owl
comment: http://www.novaccine.com/vaccine-ingredients/results.asp

glutaraldehyde vaccine additive
type: Class
subclass of: vaccine preservative
subclass of: Restriction
  on property: has role at some time
  some values from: vaccine preservative role
imported from: vo.owl

human albumin cell culture residual in vaccine
type: Class
subclass of: cell culture residual in vaccine
definition: a cell culture residual in vaccine that is human albumin.
definition editor: YH
imported from: vo.owl

human serum cell culture residual in vaccine
type: Class
subclass of: cell culture residual in vaccine
definition: a cell culture residual in vaccine that is human serum.
definition editor: YH
imported from: vo.owl

polysorbate 20 vaccine stabilizer
type: Class
subclass of: vaccine stabilizer
subclass of: Restriction
  on property: has role at some time
  some values from: vaccine stabilizer role
definition editor: YH, YL
imported from: vo.owl
definition: a vaccine stabilizer that is a polysorbate 20. It encourages the suspension of one liquid in another and has mild toxicity.
comment: Potential Acute Health Effects: Slightly hazardous in case of skin contact (irritant), of eye contact (irritant), of ingestion, of inhalation. Reference: http://www.sciencelab.com/msds.php?msdsId=9926640
comment: http://www.novaccine.com/vaccine-ingredients/results.asp

polysorbate 80 vaccine emulsifier
type: Class
subclass of: vaccine component
definition: a vaccine emulsifier that uses polysorbate 80, also known as polyoxyethylene sorbitan monooleate or Tween™ 80.
definition editor: YH,YL
alternative term: Tween 80 vaccine emulsifier
definition source: WEB: http://www.wisegeek.org/what-is-polysorbate-80.htm
imported from: vo.owl
comment: Tween 80 is an amber-colored, viscous liquid with a slightly bitter taste. The product is a derivative of sorbitol and oleic acid.

vaccine residual protein from cell culture
type: Class
subclass of: cell culture residual in vaccine
definition: a cell culture residual in vaccine that is residual protein from cell culture.
definition editor: YH
imported from: vo.owl

sorbitol vaccine stabilizer
type: Class
subclass of: vaccine stabilizer
subclass of: Restriction
  on property: has part
  some values from: glucitol
definition: a vaccine stabilizer that is specifically made by sorbitol.
definition editor: YH, YL
alternative term: glucitol
imported from: vo.owl
comment: Sorbitol, also known as glucitol, is a sugar alcohol that the human body metabolizes slowly. It can be obtained by reduction of glucose, changing the aldehyde group to a hydroxyl group. Sorbitol is found in apples, pears, peaches, and prunes. It is synthesized by sorbitol-6-phosphate dehydrogenase, and converted to fructose by succinate dehydrogenase and sorbitol dehydrogenase. Succinate dehydrogenase is an enzyme complex that participates in the citric acid cycle. (wikipedia)

sucrose albumin cell culture residual in vaccine
type: Class
subclass of: cell culture residual in vaccine
definition: a cell culture residual in vaccine that is sucrose albumin.
definition editor: YH
imported from: vo.owl

xanthan gum vaccine ajuvant
type: Class
subclass of: vaccine adjuvant
definition editor: YL
definition source: PMID: 19608270
imported from: vo.owl

yeast extract cell culture residual in vaccine
type: Class
subclass of: cell culture residual in vaccine
definition: a cell culture residual in vaccine that is from yeast extract.
definition editor: YH
imported from: vo.owl

yeast protein cell culture residual in vaccine
type: Class
subclass of: cell culture residual in vaccine
definition: a cell culture residual in vaccine that is yeast protein.
definition editor: YH
imported from: vo.owl

Diphtheria-Tetanus-Pertussis-Haemophilus b vaccine
type: Class
subclass of: Diphtheria-Tetanus-Pertussis vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Haemophilus influenzae serotype b
imported from: vo.owl

Diphtheria-Tetanus-Poliovirus vaccine
type: Class
subclass of: Diphtheria-Tetanus vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Dintheria
imported from: vo.owl

V. cholerae and E. coli vaccine
type: Class
subclass of: bacterial vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Escherichia coli
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Vibrio cholerae
imported from: vo.owl

Measles-Rubella vaccine
type: Class
subclass of: Measles virus vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Rubella virus
definition: A Measles virus vaccine that is also used against Rubella virus infection.
definition: YH
imported from: vo.owl

Diphtheria-Tetanus-Pertussis-Poliovirus-Haemophilus b-Hepatitis B vaccine
type: Class
subclass of: Diphtheria-Tetanus-Pertussis-Poliovirus-Haemophilus b vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Hepatitis B virus
imported from: vo.owl

Salmonella typhi-Hepatitis A vaccine
type: Class
subclass of: viral vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Hepatitis A virus
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Salmonella enterica subsp. enterica serovar Typhi
imported from: vo.owl

Flublok
type: Class
subclass of: Influenza virus vaccine
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Influenzavirus B
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
definition editor: Yongqun He
imported from: vo.owl
comment: Trade Name: Flublok

Flucelvax
type: Class
subclass of: Influenza virus vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Influenzavirus B
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Novartis
definition editor: Yongqun He
imported from: vo.owl
comment: Trade Name: Flucelvax

FluMist Quadrivalent
type: Class
subclass of: Influenza virus vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism live attenuated
subclass of: Restriction
  on property: vaccinated in route
  some values from: intranasal route by spray
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Influenzavirus B
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: MedImmune Vaccines, Inc
definition editor: YH
imported from: vo.owl

Fluarix Quadrivalent
type: Class
subclass of: Influenza virus vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH
imported from: vo.owl

Tetanus Toxoid (for Boost use Only) by Sanofi Pasteur Inc
type: Class
subclass of: Clostridium tetani vaccine
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur, Inc
definition: a tetanus vaccine manusfactured by Sanofi Pasteur Inc. that is only for booster use (not recommended for primary immunization)
definition editor: YH
definition source: WEB: http://www.fda.gov/downloads/BiologicsBloodVaccines/Vaccines/ApprovedProducts/UCM142732.pdf
imported from: vo.owl

bacterial vaccine organism live attenuated
type: Class
equivalent class: Class
  intersection of: vaccine organism live attenuated
  intersection of: Restriction
    on property: inheres_in
    some values from: Bacteria
subclass of: vaccine organism live attenuated
definition: a live attenuated quality of a bacterial vaccine strain.
definition editor: YH
imported from: vo.owl

viral vaccine organism live attenuated
type: Class
equivalent class: Class
  intersection of: vaccine organism live attenuated
  intersection of: Restriction
    on property: inheres_in
    some values from: Viruses
subclass of: vaccine organism live attenuated
definition: a live attenuated quality of a virus vaccine strain.
definition editor: YH
imported from: vo.owl

Agriflu
type: Class
subclass of: Influenza virus vaccine
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Novartis
definition editor: YH
imported from: vo.owl
see also: CVX: 140

intramuscular vaccination
type: Class
subclass of: vaccination
subclass of: Restriction
  on property: unfolds_in
  some values from: intramuscular route
definition: a vaccination that occurs in the intramuscular route.
definition editor: YH, YL
imported from: vo.owl

Prevnar 13
type: Class
subclass of: polyvalent pneumococcal vaccine
subclass of: Restriction
  on property: has part
  some values from: vaccine conjugate protein
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Wyeth Pharmaceuticals Inc
definition editor: ZX
imported from: vo.owl
see also: CVX: 133
see also: VIOLIN Vaccine ID: 1114

Menveo
type: Class
subclass of: Neisseria meningitidis vaccine
subclass of: Restriction
  on property: has part
  some values from: vaccine conjugate protein
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Novartis
imported from: vo.owl
see also: CVX: 136
see also: VIOLIN Vaccine ID: 1113

capsular polysaccharide of pathogen organism as vaccine component
type: Class
subclass of: part of pathogen organism in vaccine
definition editor: YH
imported from: vo.owl

vaccine host role
type: Class
subclass of: role
subclass of: Restriction
  on property: inheres_in
  some values from: organism
definition: a role of host that contains vaccine. It is a role that inheres in an organism that is the target of a vaccine administration (vaccination process).
definition editor: YH, ZX
imported from: vo.owl

vaccine target specification
type: Class
subclass of: objective specification
definition: The objective that intends to produce vaccine via the vaccine preparation process.
imported from: vo.owl
creator: YH

Influenza A (H1N1) 2009 Monovalent Vaccine (IDB)
type: Class
subclass of: H1N1 Influenza vaccine
subclass of: Restriction
  on property: has quality at all times
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: ID Biomedical Corporation of Quebec
subclass of: Restriction
  on property: is_distributed_by
  has value: GlaxoSmithKline Biologicals
imported from: vo.owl

intradermal vaccination
type: Class
subclass of: vaccination
subclass of: Restriction
  on property: unfolds_in
  some values from: intradermal route
imported from: vo.owl
creator: YL
creator: vaccination process that occurs in intradermal route.

intranasal vaccination
type: Class
subclass of: vaccination
subclass of: Restriction
  on property: unfolds_in
  some values from: intranasal route
definition: vaccination process that occurs in intranasal route
imported from: vo.owl
creator: YL

oral vaccination
type: Class
subclass of: vaccination
subclass of: Restriction
  on property: unfolds_in
  some values from: oral route
definition: vaccination process that occurs in oral route.
imported from: vo.owl
creator: YL

subcutaneous vaccination
type: Class
subclass of: vaccination
subclass of: Restriction
  on property: unfolds_in
  some values from: subcutaneous route
definition: vaccination process that occurs in the subcutaneous route
imported from: vo.owl
creator: YL

vaccine emulsifier role
type: Class
subclass of: vaccine additive role
definition: a role inheres in the vaccine component when it is added into vaccine's formulation, it tends to stabilizes an emulsion by increasing its kinetic stablity.
definition editor: YL
imported from: vo.owl

vaccine stabilizer role
type: Class
subclass of: vaccine additive role
definition: a role inheres in vaccine component when added into vaccine's formulation, it tends to inhibit the reaction between two or more other vaccine substances in the final vaccine formulation; it also helps to protect the vaccine from adverse conditions such as the freeze-drying process or heat.
definition editor: YL
imported from: vo.owl

vaccine conjugate protein
type: Class
equivalent class: Class
  intersection of: vaccine component
  intersection of: Restriction
    on property: bearer_of
    some values from: vaccine conjugate role
subclass of: vaccine component
definition: The conjugate protein is a part of a conjugate vaccine and acts as a carrier protein that is covalently attached to a vaccine antigen with poor antigenicity (e.g., a polysaccharide). A conjugate protein is able to induce T-cell-dependent immune responses and stimulate the production of immune memory.
definition editor: YL,YH
imported from: vo.owl

vaccine conjugate role
type: Class
subclass of: vaccine component role
definition: role inheres in a material eneitity that union itself chemically with a relative weak vaccine antigen to form a new whole that can create an effective miinuogen. The
imported from: vo.owl
creator: YL

percutaneous route
type: Class
subclass of: route of administration
definition editor: YL
imported from: vo.owl
comment: epicutaneous (application onto the skin), e

percutaneous vaccination
type: Class
subclass of: vaccination
subclass of: Restriction
  on property: unfolds_in
  some values from: percutaneous route
definition editor: Administration of a drug by the way of absorption through the skin, usually for systemic action. The route allows sustained therapeutic plasma drug levels and avoids first pass effect. Simplicity of administration tends to result in high patient compliance.
definition editor: YL
imported from: vo.owl

intravesical route
type: Class
subclass of: route of administration
subclass of: Restriction
  on property: located in at some time
  some values from: urinary bladder
imported from: vo.owl

intravesical vaccination
type: Class
subclass of: vaccination
subclass of: Restriction
  on property: unfolds_in
  some values from: intravesical route
definition: The injection of a given substance directly into the bladder via a urethral catheter instead of being injected under the skin.
definition editor: YL
imported from: vo.owl

Actacel
type: Class
subclass of: Diphtheria-Tetanus-Pertussis-Haemophilus b vaccine
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: has part
  some values from: phenoxy ethanol vaccine preservative
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH, ZX
curator note: todo: Proteins + Conjugate
imported from: vo.owl
comment: Trade Name: Actacel

Avaxim
type: Class
subclass of: Hepatitis A virus vaccine
subclass of: Restriction
  on property: has part
  some values from: formaldehyde
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: has part
  some values from: phenoxy ethanol vaccine preservative
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH, ZX
curator note: todo: Killed virus
imported from: vo.owl
comment: Trade Name: Avaxim

Avaxim - Pediatric
type: Class
subclass of: Hepatitis A virus vaccine
subclass of: Restriction
  on property: has part
  some values from: formaldehyde
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: has part
  some values from: phenoxy ethanol vaccine preservative
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH, ZX
curator note: todo: Killed virus
imported from: vo.owl
comment: Trade Name: Avaxim - Pediatric

BCG Vaccine (Freeze-Dried) (by Sanofi Pasteur)
type: Class
subclass of: BCG vaccine
subclass of: Restriction
  on property: has part
  some values from: polysorbate 80 vaccine emulsifier
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH, ZX
curator note: todo: Live bacteria
imported from: vo.owl
comment: Trade Name: BCG Vaccine (Freeze-Dried)

DT Polio Adsorbed
type: Class
subclass of: Diphtheria-Tetanus-Poliovirus vaccine
subclass of: Restriction
  on property: has part
  some values from: formaldehyde
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: has part
  some values from: phenoxy ethanol vaccine preservative
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: has vaccine allergen
  some values from: gelatin vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH, ZX
curator note: todo: Proteins + killed virus
imported from: vo.owl
comment: Trade Name: DT Polio Adsorbed

Dukoral
type: Class
subclass of: V. cholerae and E. coli vaccine
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: SBL Vaccine
subclass of: Restriction
  on property: is_distributed_by
  has value: Sanofi Pasteur Limited
definition editor: YH, ZX
curator note: todo: Proteins + killed bacteria
imported from: vo.owl
comment: Trade Name: Dukoral

Engerix-B
type: Class
subclass of: Hepatitis B virus vaccine
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: has part
  some values from: yeast protein cell culture residual in vaccine
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH, ZX
imported from: vo.owl
comment: Product Name: Hepatitis B Vaccine (Recombinant)
comment: Trade Name: Engerix-B
see also: CVX: 08
see also: CVX: 44

Eolarix
type: Class
subclass of: Measles-Rubella vaccine
subclass of: Restriction
  on property: has part
  some values from: lactose
subclass of: Restriction
  on property: has part
  some values from: dextran
subclass of: Restriction
  on property: has part
  some values from: human albumin cell culture residual in vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism live attenuated
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition: A Measles-Rubella vaccine that is live attenuated and manufactured by GlaxoSmithKline Biologicals.
definition editor: YH, ZX
imported from: vo.owl
comment: Trade Name: Eolarix

Epaxal
type: Class
subclass of: Hepatitis A virus vaccine
subclass of: Restriction
  on property: has part
  some values from: formaldehyde
subclass of: Restriction
  on property: has part
  some values from: thimerosal vaccine preservative
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Berna Biotech, Ltd
definition editor: YH, ZX
curator note: todo: Killed virus
imported from: vo.owl
comment: Trade Name: Epaxal

FSME - IMMUN
type: Class
subclass of: Tick-borne Encephalitis Virus (TBEV) vaccine
subclass of: Restriction
  on property: has part
  some values from: formaldehyde
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: has part
  some values from: human serum cell culture residual in vaccine
subclass of: Restriction
  on property: has part
  some values from: sucrose albumin cell culture residual in vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: has vaccine allergen
  some values from: gentamycin
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: has vaccine allergen
  some values from: protamine sulfate vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Baxter Healthcare Corporation
definition editor: YH, ZX
curator note: todo: Inactivated whole virus
imported from: vo.owl
comment: Trade Name: FSME - IMMUN

Hiberix
type: Class
subclass of: Haemophilus influenzae serotype b vaccine
subclass of: Restriction
  on property: has part
  some values from: lactose
subclass of: Restriction
  on property: has role at all times
  some values from: conjugate vaccine role
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH, ZX
imported from: vo.owl
comment: Trade Name: Hiberix
see also: CVX: 48

Imovax Polio
type: Class
subclass of: Poliovirus vaccine
subclass of: Restriction
  on property: has part
  some values from: formaldehyde
subclass of: Restriction
  on property: has part
  some values from: phenoxy ethanol vaccine preservative
subclass of: Restriction
  on property: has part
  some values from: bovine serum cell culture residual in vaccine
subclass of: Restriction
  on property: has part
  some values from: polysorbate 80 vaccine emulsifier
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: has vaccine allergen
  some values from: streptomycin
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: has vaccine allergen
  some values from: gelatin vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH, ZX
curator note: todo: Killed virus
imported from: vo.owl
comment: Trade Name: Imovax Polio

Imovax Rabies (Canada)
type: Class
subclass of: Rabies virus vaccine
subclass of: Restriction
  on property: has part
  some values from: human albumin cell culture residual in vaccine
subclass of: Restriction
  on property: has quality at all times
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH, ZX
imported from: vo.owl
comment: Trade Name: Imovax Rabies

Inactivated Poliomyelitis Vaccine - IPV
type: Class
subclass of: Poliovirus vaccine
subclass of: Restriction
  on property: has part
  some values from: formaldehyde
subclass of: Restriction
  on property: has part
  some values from: phenoxy ethanol vaccine preservative
subclass of: Restriction
  on property: has part
  some values from: bovine serum cell culture residual in vaccine
subclass of: Restriction
  on property: has part
  some values from: polysorbate 80 vaccine emulsifier
subclass of: Restriction
  on property: has quality at all times
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: has vaccine allergen
  some values from: gelatin vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH, ZX
curator note: todo: Killed virus
imported from: vo.owl
comment: Trade Name: Inactived Poliomyelitis Vaccine - IPV

Infanrix-hexa
type: Class
subclass of: Diphtheria-Tetanus-Pertussis-Poliovirus-Haemophilus b-Hepatitis B vaccine
subclass of: Restriction
  on property: has part
  some values from: formaldehyde
subclass of: Restriction
  on property: has part
  some values from: lactose
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: has part
  some values from: phenoxy ethanol vaccine preservative
subclass of: Restriction
  on property: has part
  some values from: polysorbate 20 vaccine stabilizer
subclass of: Restriction
  on property: has part
  some values from: polysorbate 80 vaccine emulsifier
subclass of: Restriction
  on property: has part
  some values from: yeast protein cell culture residual in vaccine
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: has vaccine allergen
  some values from: latex vaccine allergen
subclass of: Restriction
  on property: has vaccine allergen
  some values from: gelatin vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH, ZX
curator note: todo: Proteins + killed viruses + conjugate
imported from: vo.owl
comment: Trade Name: Infanrix-hexa

Infanrix/Hib
type: Class
subclass of: Diphtheria-Tetanus-Pertussis-Haemophilus b vaccine
subclass of: Restriction
  on property: has part
  some values from: formaldehyde
subclass of: Restriction
  on property: has part
  some values from: lactose
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: has part
  some values from: phenoxy ethanol vaccine preservative
subclass of: Restriction
  on property: has vaccine allergen
  some values from: latex vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH, ZX
curator note: todo: Proteins + conjugate
imported from: vo.owl
comment: Trade Name: Infanrix/Hib

Infanrix-IPV
type: Class
subclass of: Diphtheria-Tetanus-Pertussis-Poliovirus vaccine
subclass of: Restriction
  on property: has part
  some values from: formaldehyde
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: has part
  some values from: phenoxy ethanol vaccine preservative
subclass of: Restriction
  on property: has part
  some values from: polysorbate 80 vaccine emulsifier
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: has vaccine allergen
  some values from: latex vaccine allergen
subclass of: Restriction
  on property: has vaccine allergen
  some values from: gelatin vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH, ZX
curator note: todo: Proteins + killed virus
imported from: vo.owl
comment: Trade Name: Infanrix-IPV

Infanrix -IPV/Hib
type: Class
subclass of: Diphtheria-Tetanus-Pertussis-Poliovirus-Haemophilus b vaccine
subclass of: Restriction
  on property: has part
  some values from: formaldehyde
subclass of: Restriction
  on property: has part
  some values from: lactose
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: has part
  some values from: phenoxy ethanol vaccine preservative
subclass of: Restriction
  on property: has part
  some values from: polysorbate 80 vaccine emulsifier
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: has vaccine allergen
  some values from: latex vaccine allergen
subclass of: Restriction
  on property: has vaccine allergen
  some values from: gelatin vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH, ZX
curator note: todo: Proteins + killed virus + conjugate
imported from: vo.owl
comment: Trade Name: Infanrix -IPV/Hib
see also: CVX: 120

Liquid Pedvax HIB
type: Class
subclass of: Haemophilus influenzae serotype b vaccine
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: has part
  some values from: vaccine conjugate protein
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: has vaccine allergen
  some values from: latex vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Merck & Co, Inc
subclass of: Restriction
  on property: is_manufactured_by
  has value: Merck Frosst
definition editor: YH, ZX
imported from: vo.owl
comment: Trade Name: Liquid Pedvax HIB

Meningitec
type: Class
subclass of: Neisseria meningitidis vaccine
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: has vaccine allergen
  some values from: latex vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Berna Biotech, Ltd
subclass of: Restriction
  on property: is_distributed_by
  has value: Wyeth Canada
definition editor: YH, ZX
curator note: todo: Conjugate
imported from: vo.owl
comment: Trade Name: Meningitec

Meningococcal Polysaccharide Vaccine, Groups A & C, Menomune A/C
type: Class
subclass of: Neisseria meningitidis vaccine
subclass of: Restriction
  on property: has part
  some values from: lactose
subclass of: Restriction
  on property: has vaccine allergen
  some values from: latex vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH, ZX
curator note: todo: Polysaccharide
imported from: vo.owl
comment: Trade Name: Meningococcal Polysaccharide Vaccine, Groups A & C, Menomune A/C

Menjugate
type: Class
subclass of: Neisseria meningitidis vaccine
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Novartis Vaccines and Diagnostics
definition editor: YH, ZX
curator note: todo: Conjugate
imported from: vo.owl
comment: Trade Name: Menjugate

Menomune A/C/Y/W-135
type: Class
subclass of: Neisseria meningitidis vaccine
subclass of: Restriction
  on property: has part
  some values from: lactose
subclass of: Restriction
  on property: has vaccine allergen
  some values from: latex vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH, ZX
curator note: todo: Polysaccharide
imported from: vo.owl
comment: Trade Name: Menomune A/C/Y/W-135

Mutacol
type: Class
subclass of: Vibrio cholerae vaccine
subclass of: Restriction
  on property: has part
  some values from: lactose
subclass of: Restriction
  on property: has part
  some values from: aspartame
subclass of: Restriction
  on property: has part
  some values from: yeast extract cell culture residual in vaccine
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Berna Biotech, Ltd
definition: A live attenuated V. cholerae vaccine that is manufactured by Berna Biotech, Ltd. This vaccine uses the V. Cholera strain CVD 103-HGR.
definition editor: YH, ZX
curator note: todo: Live bacteria
imported from: vo.owl
comment: Trade Name: Mutacol

Neisvac-C
type: Class
subclass of: Neisseria meningitidis vaccine
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Baxter Healthcare Corporation
subclass of: Restriction
  on property: is_distributed_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH, ZX
curator note: todo: Conjugate
imported from: vo.owl
comment: Trade Name: Neisvac-C

Pediacel
type: Class
subclass of: Diphtheria-Tetanus-Pertussis-Poliovirus-Haemophilus b vaccine
subclass of: Restriction
  on property: has part
  some values from: formaldehyde
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: has part
  some values from: phenoxy ethanol vaccine preservative
subclass of: Restriction
  on property: has part
  some values from: bovine serum cell culture residual in vaccine
subclass of: Restriction
  on property: has part
  some values from: polysorbate 80 vaccine emulsifier
subclass of: Restriction
  on property: has vaccine allergen
  some values from: streptomycin
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: has vaccine allergen
  some values from: latex vaccine allergen
subclass of: Restriction
  on property: has vaccine allergen
  some values from: gelatin vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH, ZX
curator note: todo: Proteins, killed virus + conjugate
imported from: vo.owl
comment: Trade Name: Pediacel

Pneumo 23
type: Class
subclass of: polyvalent pneumococcal vaccine
subclass of: Restriction
  on property: has part
  some values from: phenol vaccine preservative
subclass of: Restriction
  on property: has part
  some values from: capsular polysaccharide of pathogen organism as vaccine component
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH, ZX
curator note: todo: Polysaccharide
imported from: vo.owl
comment: Trade Name: Pneumo 23

Pneumovax 23 (Canada)
type: Class
subclass of: polyvalent pneumococcal vaccine
subclass of: Restriction
  on property: has part
  some values from: phenol vaccine preservative
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Merck Frosst
definition editor: YH, ZX
imported from: vo.owl
comment: Trade Name: Pneumovax 23

Prevnar (Canada)
type: Class
subclass of: polyvalent pneumococcal vaccine
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: has vaccine allergen
  some values from: latex vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Wyeth Canada
definition editor: YH, ZX
curator note: todo: Conjugate
imported from: vo.owl
comment: Trade Name: Prevnar

Priorix
type: Class
subclass of: Measles-Mumps-Rubella vaccine
subclass of: Restriction
  on property: has part
  some values from: lactose
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism live attenuated
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition: A MMR vaccine that is manufactured by GlaxoSmithKline Biologicals.
definition editor: YH, ZX
imported from: vo.owl
comment: Trade Name: Priorix

Priorix-Tetra
type: Class
subclass of: Measles-Mumps-Rubella-Vericella vaccine
subclass of: Restriction
  on property: has part
  some values from: lactose
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism live attenuated
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition: A Measles-Mumps-Rubella-Vericella vaccine that is live attenuated and manufactured by GlaxoSmithKline Biologicals.
definition editor: YH, ZX
imported from: vo.owl
comment: Trade Name: Priorix-Tetra

Quadracel
type: Class
subclass of: Diphtheria-Tetanus-Pertussis-Poliovirus vaccine
subclass of: Restriction
  on property: has part
  some values from: formaldehyde
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: has part
  some values from: phenoxy ethanol vaccine preservative
subclass of: Restriction
  on property: has part
  some values from: bovine albumin cell culture residual in vaccine
subclass of: Restriction
  on property: has part
  some values from: glutaraldehyde vaccine additive
subclass of: Restriction
  on property: has part
  some values from: polysorbate 80 vaccine emulsifier
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: has vaccine allergen
  some values from: gelatin vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH, ZX
curator note: todo: Proteins + killed virus
imported from: vo.owl
comment: Trade Name: Quadracel

Recombivax HB
type: Class
subclass of: Hepatitis B virus vaccine
subclass of: Restriction
  on property: has part
  some values from: formaldehyde
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: has part
  some values from: yeast protein cell culture residual in vaccine
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: has vaccine allergen
  some values from: latex vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Merck Frosst
definition editor: YH, ZX
curator note: todo: Recombinant protein
imported from: vo.owl
comment: Trade Name: Recombivax HB
see also: CVX: 08
see also: CVX: 43
see also: CVX: 44

Rotarix
type: Class
subclass of: Rotavirus vaccine
subclass of: Restriction
  on property: has part
  some values from: dextran
subclass of: Restriction
  on property: has part
  some values from: sorbitol vaccine stabilizer
subclass of: Restriction
  on property: has part
  some values from: xanthan gum vaccine ajuvant
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism live attenuated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: oral vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH, ZX
alternative term: ROTARIX
curator note: todo: Live virus
imported from: vo.owl
comment: Trade Name: Rotarix

Td Adsorbed
type: Class
subclass of: Diphtheria-Tetanus vaccine
subclass of: Restriction
  on property: has part
  some values from: formaldehyde
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH, ZX
curator note: todo: Proteins
imported from: vo.owl
comment: Trade Name: Td Adsorbed

Tripacel
type: Class
subclass of: Diphtheria-Tetanus-Pertussis vaccine
subclass of: Restriction
  on property: has part
  some values from: formaldehyde
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: has part
  some values from: phenoxy ethanol vaccine preservative
subclass of: Restriction
  on property: has part
  some values from: glutaraldehyde vaccine additive
subclass of: Restriction
  on property: has vaccine allergen
  some values from: latex vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
definition editor: YH, ZX
curator note: todo: Proteins
imported from: vo.owl
comment: Trade Name: Tripacel

Twinrix Junior
type: Class
subclass of: Hepatitis A&B vaccine
subclass of: Restriction
  on property: has part
  some values from: formaldehyde
subclass of: Restriction
  on property: has part
  some values from: phenoxy ethanol vaccine preservative
subclass of: Restriction
  on property: has part
  some values from: polysorbate 20 vaccine stabilizer
subclass of: Restriction
  on property: has part
  some values from: yeast protein cell culture residual in vaccine
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: has vaccine allergen
  some values from: latex vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH, ZX
curator note: todo: Recombinant protein + killed virus
imported from: vo.owl
comment: Trade Name: Twinrix Junior

Typherix
type: Class
subclass of: Salmonella typhi vaccine
subclass of: Restriction
  on property: has part
  some values from: phenol vaccine preservative
subclass of: Restriction
  on property: has vaccine allergen
  some values from: latex vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH, ZX
curator note: todo: Polysaccharide
imported from: vo.owl
comment: Trade Name: Typherix

Vaqta
type: Class
subclass of: Hepatitis A virus vaccine
subclass of: Restriction
  on property: has part
  some values from: formaldehyde
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: has part
  some values from: bovine albumin cell culture residual in vaccine
subclass of: Restriction
  on property: has part
  some values from: vaccine residual protein from cell culture
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism inactivated
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: has vaccine allergen
  some values from: latex vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Merck Frosst
definition editor: YH, ZX
alternative term: VAQTA
curator note: todo: Killed virus
imported from: vo.owl
comment: Trade Name: Vaqta

Varilrix
type: Class
subclass of: Varicella-zoster virus live vaccine
subclass of: Restriction
  on property: has part
  some values from: lactose
subclass of: Restriction
  on property: has part
  some values from: human albumin cell culture residual in vaccine
subclass of: Restriction
  on property: has quality at some time
  some values from: vaccine organism live attenuated
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: has vaccine allergen
  some values from: latex vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH, ZX
curator note: todo: Live virus
imported from: vo.owl
comment: Trade Name: Varilrix

Varivax III
type: Class
subclass of: Varicella-zoster virus live vaccine
subclass of: Restriction
  on property: has part
  some values from: urea
subclass of: Restriction
  on property: has part
  some values from: sucrose
subclass of: Restriction
  on property: has part
  some values from: bovine serum cell culture residual in vaccine
subclass of: Restriction
  on property: has part
  some values from: monosodium glutamate stabliizer
subclass of: Restriction
  on property: has part
  some values from: vaccine residual protein from cell culture
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: has vaccine allergen
  some values from: gelatin vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Merck Frosst
definition editor: YH, ZX
curator note: todo: Live virus
imported from: vo.owl
comment: Trade Name: Varivax III

ViVaxim
type: Class
subclass of: Salmonella typhi-Hepatitis A vaccine
subclass of: Restriction
  on property: has part
  some values from: formaldehyde
subclass of: Restriction
  on property: has part
  some values from: aluminum vaccine adjuvant
subclass of: Restriction
  on property: has part
  some values from: phenoxy ethanol vaccine preservative
subclass of: Restriction
  on property: has part
  some values from: polysorbate 80 vaccine emulsifier
subclass of: Restriction
  on property: has vaccine allergen
  some values from: neomycin
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Sanofi Pasteur Limited
editor note: todo: assign parent immunogen: Typh-I + (HA)
definition editor: YH, ZX
curator note: todo: Polysaccharide + killed virus
imported from: vo.owl
comment: Trade Name: ViVaxim

Vivotif (Canada)
type: Class
subclass of: Salmonella typhi vaccine
subclass of: Restriction
  on property: has part
  some values from: lactose
subclass of: Restriction
  on property: has part
  some values from: aspartame
subclass of: Restriction
  on property: has vaccine allergen
  some values from: gelatin vaccine allergen
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: Canada licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Berna Biotech, Ltd
definition editor: YH, ZX
curator note: todo: Live virus
imported from: vo.owl
comment: Trade Name: Vivotif

Ixiaro
type: Class
subclass of: Japanese encephalitis virus vaccine
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: Intercell Biomedical
definition editor: YH, ZX
imported from: vo.owl
see also: CVX: 134
see also: VIOLIN Vaccine ID: 741

Cervarix
type: Class
subclass of: human papillomavirus vaccine
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: vaccine immunization for host
  some values from: Homo sapiens
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Class
    intersection of: HPV 11
    intersection of: HPV 16
subclass of: Restriction
  on property: bearer_of
  some values from: USA licensed vaccine role
subclass of: Restriction
  on property: is_manufactured_by
  has value: GlaxoSmithKline Biologicals
definition editor: YH, ZX
imported from: vo.owl
see also: CVX: 118
see also: VIOLIN Vaccine ID: 740

Haemophilus influenzae vaccine
type: Class
subclass of: Haemophilus vaccine
definition: A vaccine that protects against Haemophilus influenzae.
definition editor: YH, ZX
alternative term: Haemophilus influenzae
imported from: vo.owl

Tick-borne Encephalitis Virus (TBEV) vaccine
type: Class
subclass of: viral vaccine
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Tick-borne encephalitis virus
definition: A vaccine that protects against Tick-borne Encephalitis Virus (TBEV).
definition editor: YH, ZX
alternative term: Tick-borne Encephalitis Virus (TBEV)
imported from: vo.owl

administration process
type: Class
subclass of: spatiotemporal region

apartment number
type: Class
subclass of: geographic location
definition: number corresponding to a person's apartment
id: http://semanticscience.org/resource/SIO_000768

biochemical entity
type: Class
subclass of: biological entity
definition: a biological molecule involved in a metabloic pathway

biological entity
type: Class
subclass of: material entity
definition: a biological molecule involved in a metabloic pathway

birthdate
type: Class
subclass of: identifiers
definition: the date which a person is born
id: http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C68615

bodily process
type: Class
subclass of: process
definition: a process which occurs in the body
id: http://purl.obolibrary.org/obo/OGMS_0000060

building number
type: Class
subclass of: geographic location
definition: number corresponding to a person's apartment building
id: http://purl.bioontology.org/ontology/HL7/C1550714

city
type: Class
subclass of: geographic location
definition: a major metropolitan center of a region
id: http://purl.obolibrary.org/obo/creno.owl#City

clinic address
type: Class
subclass of: geographic location
definition: the location of a clinic or physician's ofice

country
type: Class
subclass of: geographic location
definition: A Geopolitical Entity that delimits a Government with effective internal and external sovereignty over the region and its population, and which is not dependent on or subject to any other power or Geopolitical Entity.
id: http://www.ontologyrepository.com/CommonCoreOntologies/Country

digital address
type: Class
subclass of: identifiers

email address
type: Class
subclass of: digital address
definition: the address a person can receive and send electronic messages
id: http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C42775

geographic location
type: Class
subclass of: spatiotemporal region
definition: A reference to a place on the Earth, by its name or by its geographical location.
id: geographic location

home address
type: Class
subclass of: geographic location
subclass of: Restriction
  on property: has component
  some values from: apartment number
subclass of: Restriction
  on property: has component
  some values from: building number
subclass of: Restriction
  on property: has component
  some values from: city
subclass of: Restriction
  on property: has component
  some values from: country
subclass of: Restriction
  on property: has component
  some values from: state
subclass of: Restriction
  on property: has component
  some values from: street
subclass of: Restriction
  on property: has component
  some values from: zip code
definition: the place where a person or organization is located or may be reached
id: http://purl.org/net/OCRe/OCRe.owl#OCRE400040

id
type: Class
subclass of: identifiers
definition: form of identification

immune response
type: Class
subclass of: bodily process
definition: Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
id: http://purl.obolibrary.org/obo/GO_0006955

identifiers
type: Class
subclass of: document part

name
type: Class
subclass of: identifiers
definition: a combination of words by which a person is called
id: https://www.codamono.com/biointerchange/gfvo#Name

state
type: Class
subclass of: geographic location
definition: regional government within a country
id: http://purl.obolibrary.org/obo/creno.owl#State

street
type: Class
subclass of: geographic location
definition: a public roadway in a village, town, or city
id: http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C80230

telephone
type: Class
subclass of: identifiers
definition: the cellular number where a person can be reached
id: http://purl.obolibrary.org/obo/NCIT_C40978

vaccine data item
type: Class
subclass of: data item

vaccine lot number
type: Class
subclass of: vaccine data item
term_mapping_to_NCIT: http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C70848
definition: a unique identifier assigned to a specific batch of a vaccine

vaccine series number
type: Class
subclass of: vaccine data item
definition: the succession of vaccinations provided for a particular disease

vaccine expiration date
type: Class
subclass of: vaccine data item
definition: The date assigned by the manufacturer on which the vaccine should no longer be used

Gardasil 9
type: Class
subclass of: human papillomavirus vaccine
subclass of: Restriction
  on property: is_specified_input_of
  some values from: intramuscular vaccination
subclass of: Restriction
  on property: is_manufactured_by
  some values from: Class
    one of: Merck & Co, Inc
subclass of: Restriction
  on property: vaccine immunization against microbe
  some values from: Class
    union of: HPV 11
    union of: HPV 16
    union of: HPV 18
    union of: HPV 31
    union of: HPV 33
    union of: HPV 45
    union of: HPV 52
    union of: HPV 58
    union of: HPV 6
definition: a variant of the HPV vaccine which targets 9 HPV strains

HPV 11
type: Class
subclass of: Human papillomavirus
definition: HPV strain

HPV 16
type: Class
subclass of: Human papillomavirus
definition: HPV strain

HPV 18
type: Class
subclass of: Human papillomavirus
definition: HPV strain

HPV 31
type: Class
subclass of: Human papillomavirus
definition: HPV strain

HPV 33
type: Class
subclass of: Human papillomavirus
definition: HPV strain

HPV 45
type: Class
subclass of: Human papillomavirus
definition: HPV strain

HPV 52
type: Class
subclass of: Human papillomavirus
definition: HPV strain

HPV 58
type: Class
subclass of: Human papillomavirus
definition: HPV strain

HPV 6
type: Class
subclass of: Human papillomavirus
definition: HPV strain

HepB vaccination
type: Class
subclass of: vaccination
definition: vaccination against HepB infection
id: http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C178932

hispanic or latino
type: Class
subclass of: ethnic category data item
id: obsolete OMB Hispanic or Latino identity information content entity

not hispanic or latino
type: Class
subclass of: ethnic category data item
id: obsolete OMB not Hispanic or Latino identity information content entity

American Indian or Alaska Native
type: Class
subclass of: racial category data item
id: obsolete OMB American Indian or Alaska Native identity information content entity

Asian
type: Class
subclass of: racial category data item
id: obsolete OMB Asian identity information content entity

Black or African American
type: Class
subclass of: racial category data item
id: obsolete OMB black or African American identity information content entity

Native Hawaiian or Other Pacific Islander
type: Class
subclass of: racial category data item
id: obsolete OMB Native Hawaiian or other Pacific Islander identity information content entity

White
type: Class
subclass of: racial category data item
id: obsolete OMB white identity information content entity

HPV entity
type: Class
subclass of: biochemical entity
definition: component related to HPV

papillomavirus particles
type: Class
subclass of: HPV entity
definition: the infectious units of papillomaviruses

protein
type: Class
subclass of: HPV entity
definition: A physical entity consisting of a sequence of amino acids; a protein monomer; a single polypeptide chain.
id: http://www.biopax.org/release/biopax-level3.owl#Protein

virus-like particles
type: Class
subclass of: HPV entity
definition: non-infectious, virus-derived structures that mimic the form and size of a virus but lack the genetic material necessary for replication

E1
type: Class
subclass of: protein
definition: protein which facilitates the early spead of papillomavirus

E2
type: Class
subclass of: protein
definition: protein which facilitates the early spead of papillomavirus

E3
type: Class
subclass of: protein
definition: protein which facilitates the early spead of papillomavirus

E4
type: Class
subclass of: protein
definition: protein which facilitates the early spead of papillomavirus

E5
type: Class
subclass of: protein
definition: protein which facilitates the early spead of papillomavirus

E6
type: Class
subclass of: protein
definition: protein which facilitates the early spead of papillomavirus

E7
type: Class
subclass of: protein
definition: protein which facilitates the early spead of papillomavirus

L1
type: Class
subclass of: protein
definition: gene and protein which encodes for HPV strain

L2
type: Class
subclass of: protein
definition: gene and protein which encodes for HPV strain

antibodies
type: Class
subclass of: biochemical entity
definition: Immunoglobulin molecules having a specific amino acid sequence by virtue of which they interact only with the ANTIGEN (or a very similar shape) that induced their synthesis in cells of the lymphoid series
id: http://purl.bioontology.org/ontology/MESH/D000906

vaccination schedule
type: Class
subclass of: temporal region
definition: An action specification comprising the number of doses and their timing for a vaccination of an individual organism against a specific infectious agent.

age of eligibility
type: Class
subclass of: vaccination schedule
definition: the age in which a person is eligible to receive a vaccine

min interval between
type: Class
subclass of: vaccination schedule
definition: the minimum interval of time for successive doses of a vaccine to be administeres

min overdue age
type: Class
subclass of: vaccination schedule
definition: minimum age it is recommended for a vaccine to be administeres

min rec age
type: Class
subclass of: vaccination schedule
definition: minimum age required to receive the immunization

min rec interval
type: Class
subclass of: vaccination schedule
definition: the minimum reccomended interval for administration

overdue interval between
type: Class
subclass of: vaccination schedule
definition: interval of time where it is not recommended to administer successive doses

nurse
type: Class
subclass of: health care provider

laryngeal cancer
type: Class
subclass of: hpv-related cancer
subclass of: Restriction
  on property: realized in response to stimulus
  some values from: Class
    union of: HPV 11
    union of: HPV 6

health care provider
type: Class
subclass of: Homo sapiens
subclass of: Restriction
  on property: has role
  some values from: health care provider role
subclass of: Restriction
  on property: member of
  some values from: health care clinic

doctor
type: Class
subclass of: health care provider

physician
type: Class
subclass of: health care provider

vaccine administrator
type: Class
subclass of: health care provider

first responder
type: Class
subclass of: Homo sapiens
comment: A pubic safety employee or volunteer whose duties include responding rapidly to an emergency

gender identifier
type: Class
subclass of: identifier

date of birth
type: Class
subclass of: identifier

male gender identifier
type: Class
subclass of: gender identifier

female gender identifier
type: Class
subclass of: gender identifier

intersex gender identifier
type: Class
subclass of: gender identifier

transgender identifier
type: Class
subclass of: gender identifier

digital address
type: Class
subclass of: identifier

email address
type: Class
subclass of: digital address

vaccination dose
type: Class
subclass of: planned process

hpv-related cancer
type: Class
subclass of: cancer

oropharyngeal cancer
type: Class
subclass of: hpv-related cancer
subclass of: Restriction
  on property: realized in response to stimulus
  some values from: HPV 16

penile cancer
type: Class
subclass of: hpv-related cancer
subclass of: Restriction
  on property: realized in response to stimulus
  some values from: HPV 16

vaginal cancer
type: Class
subclass of: hpv-related cancer
subclass of: Restriction
  on property: realized in response to stimulus
  some values from: HPV 16

cervical cancer
type: Class
subclass of: hpv-related cancer
subclass of: Restriction
  on property: realized in response to stimulus
  some values from: Class
    union of: HPV 16
    union of: HPV 18
    union of: HPV 31
    union of: HPV 45

anal cancer
type: Class
subclass of: hpv-related cancer
subclass of: Restriction
  on property: realized in response to stimulus
  some values from: HPV 16

vulvar cancer
type: Class
subclass of: hpv-related cancer
subclass of: Restriction
  on property: realized in response to stimulus
  some values from: Class
    union of: HPV 16
    union of: HPV 18
    union of: HPV 33

health care clinic
type: Class
subclass of: organization
subclass of: Restriction
  on property: provides service
  some values from: vaccination
definition: a place with a group of physicians dedicated to the treatment of patients

pharmaceutical company
type: Class
subclass of: company

viral infection
type: Class
subclass of: disease

human papilllomavirus infection
type: Class
subclass of: viral infection
subclass of: Restriction
  on property: realized in response to stimulus
  some values from: Human papillomavirus
subclass of: Restriction
  on property: has symptoms
  some values from: cervical changes
subclass of: Restriction
  on property: has symptoms
  some values from: genital warts
subclass of: Restriction
  on property: has symptoms
  some values from: skin itchiness
subclass of: Restriction
  on property: has symptoms
  some values from: skin warts

upper deltoid
type: Class
subclass of: skeletal muscle tissue

cervical changes
type: Class
subclass of: symptom

genital warts
type: Class
subclass of: symptom

skin itchiness
type: Class
subclass of: symptom

skin warts
type: Class
subclass of: symptom

disclosure
type: Class
subclass of: social act
definition: the act of disclosing valuable information

minor informed consent form
type: Class
subclass of: informed consent form

Vaccine Information Statement
type: Class
subclass of: document
alternative term: VIS
definition: sheets that explain both the benefits and risks of a vaccine to vaccine recipients

immunization registry
type: Class
subclass of: system

hpv vaccination informed consent process
type: Class
subclass of: vaccination informed consent process
subclass of: Restriction
  on property: has participant
  some values from: hpv vaccine administrator
subclass of: Restriction
  on property: has participant
  some values from: Class
    intersection of: minor vaccination patient
    intersection of: hpv vaccination patient
subclass of: Restriction
  on property: has participant
  some values from: Class
    union of: parent of minor vaccination patient
    union of: close physical contact person of vaccination patient
subclass of: Restriction
  on property: precedes
  some values from: human papillomavirus vaccination

hpv vaccination patient
type: Class
subclass of: vaccination patient

hpv vaccine administrator
type: Class
subclass of: vaccine administrator

Gardasil vaccination dose
type: Class
subclass of: vaccination dose

First Gardasil vaccination dose
type: Class
subclass of: Gardasil vaccination dose
subclass of: Restriction
  on property: precedes
  some values from: Second Gardasil vaccination dose

Second Gardasil vaccination dose
type: Class
subclass of: Gardasil vaccination dose
subclass of: Restriction
  on property: precedes
  some values from: Third Gardasil vaccination dose

Third Gardasil vaccination dose
type: Class
subclass of: Gardasil vaccination dose

Gardasil HPV vaccination
type: Class
subclass of: human papillomavirus vaccination
subclass of: Restriction
  on property: has participant at all times
  some values from: Gardasil
subclass of: Restriction
  on property: starts with
  some values from: First Gardasil vaccination dose
subclass of: Restriction
  on property: ends with
  some values from: Third Gardasil vaccination dose

Gardasil 9 HPV vaccination
type: Class
subclass of: human papillomavirus vaccination
subclass of: Restriction
  on property: has participant at all times
  some values from: Gardasil 9
subclass of: Restriction
  on property: starts with
  some values from: First Gardasil 9 vaccination dose
subclass of: Restriction
  on property: ends with
  some values from: Second Gardasil 9 vaccination dose

Cervarix HPV vaccination
type: Class
subclass of: human papillomavirus vaccination
subclass of: Restriction
  on property: has participant at all times
  some values from: Cervarix
subclass of: Restriction
  on property: starts with
  some values from: First Cervarix vaccination dose
subclass of: Restriction
  on property: ends with
  some values from: Third Cervarix vaccination dose

Gardasil 9 vaccination dose
type: Class
subclass of: vaccination dose

First Gardasil 9 vaccination dose
type: Class
subclass of: Gardasil 9 vaccination dose
subclass of: Restriction
  on property: precedes
  some values from: Second Gardasil 9 vaccination dose

Second Gardasil 9 vaccination dose
type: Class
subclass of: Gardasil 9 vaccination dose

Cervarix vaccination dose
type: Class
subclass of: vaccination dose

First Cervarix vaccination dose
type: Class
subclass of: Cervarix vaccination dose
subclass of: Restriction
  on property: precedes
  some values from: Second Cervarix vaccination dose

Second Cervarix vaccination dose
type: Class
subclass of: Cervarix vaccination dose
subclass of: Restriction
  on property: precedes
  some values from: Third Cervarix vaccination dose

Third Cervarix vaccination dose
type: Class
subclass of: Cervarix vaccination dose

human papillomavirus vaccination
type: Class
subclass of: vaccination
subclass of: Restriction
  on property: has participant
  some values from: Class
    intersection of: hpv vaccination patient
    intersection of: Restriction
      on property: has role at some time
      some values from: vaccine host role

vaccination history
type: Class
subclass of: history

immunization record
type: Class
subclass of: information content entity
subclass of: Restriction
  on property: is about
  some values from: vaccination history

allergic reaction history
type: Class
subclass of: history

zip code
type: Class
subclass of: geographic location
definition: a system used in the U.S. consisting of a five-digit code
id: http://purl.obolibrary.org/obo/NCIT_C25720

nose structure
type: Class
subclass of: gross anatomical part
imported from: vo.owl
imported from: efo.owl
alternative term: chemosensory sensory organ
alternative term: nose
alternative term: olfactory system
bioportal provenance: 1a: The part of the face that bears the nostrils and covers the anterior part of the nasal cavity; broadly: this part together with the nasal cavity.n1b: The anterior part of the head at the top or end of the muzzle: snout, proboscis.n2: The vertebrate olfactory organ.[accessedResource: BTO:0000840][accessDate: 05-04-2011]
bioportal provenance: Any sense organ (FBbt:00005155) that functions in (some) detection of chemical stimulus involved in sensory perception (GO:0050907).[accessedResource: FBbt:00005157][accessDate: 05-04-2011]
bioportal provenance: Nose[accessedResource: FMAID:46472][accessDate: 05-04-2011]
bioportal provenance: chemosensory sensory organ[accessedResource: FBbt:00005157][accessDate: 05-04-2011]
bioportal provenance: olfactory system[accessedResource: TAO:0001149][accessDate: 05-04-2011]
definition: *Subdivision of face which consists of the nasal skeleton, nasal septum and nasal cavity.
definition: 1a: The part of the face that bears the nostrils and covers the anterior part of the nasal cavity; broadly: this part together with the nasal cavity.n1b: The anterior part of the head at the top or end of the muzzle: snout, proboscis.n2: The vertebrate olfactory organ.
definition: 1a: The part of the face that bears the nostrils and covers the anterior part of the nasal cavity; broadly: this part together with the nasal cavity.nb: The anterior part of the head at the top or end of the muzzle: snout, proboscis.n2. The vertebrate olfactory organ.
definition: Any sense organ (FBbt:00005155) that functions in (some) detection of chemical stimulus involved in sensory perception (GO:0050907).
definition: Any sense organ (FBbt:00005155) that has function 'detection of chemical stimulus involved in sensory perception (GO:0050907)'.
definition citation: AAO:0000334
definition citation: BTO:0000840
definition citation: EHDAA:1502
definition citation: EMAPA:16542
definition citation: EV:0100037
definition citation: FBbt:00005157
definition citation: FMAID:46472
definition citation: MA:0000281
definition citation: MFO:0003640
definition citation: SAEL:72
definition citation: TAO:0001149
definition citation: XAO:0000201
definition citation: XAO:0003033
definition citation: ZFA:0001149
definition editor: James Malone

State of California
type: NamedIndividual
type: geographic location
located_in: Pacific Division
definition: A state on the West Coast of the United States, along the Pacific Ocean. It is bordered by Oregon to the north, Nevada to the east, Arizona to the southeast, and to the south the Mexican state of Baja California.
database_cross_reference: GNISID:01779778
database_cross_reference: INCITS38:06
database_cross_reference: ISO3166-2:US-CA
has_exact_synonym: CA
has_exact_synonym: Califor-nia
has_exact_synonym: California
has_obo_namespace: GAZ
id: GAZ:00002461

Hawaiian Islands
type: NamedIndividual

State of New York
type: NamedIndividual
type: geographic location
located_in: Middle Atlantic Division
database_cross_reference: GNISID:01779796
database_cross_reference: INCITS38:36
database_cross_reference: ISO3166-2:US-NY
has_exact_synonym: NY
has_obo_namespace: GAZ
id: GAZ:00002514

State of Oregon
type: NamedIndividual
type: geographic location
located_in: Pacific Division
definition: A state in the Pacific Northwest region of the United States. Oregon is located on the Pacific coast between Washington to the north, California to the south, Nevada on the southeast and Idaho to the east. The Columbia and Snake rivers delineate much of Oregon's northern and eastern boundaries respectively.
database_cross_reference: INCITS38:41
database_cross_reference: ISO3166-2:US-OR
has_exact_synonym: OR
has_exact_synonym: Oregon
has_obo_namespace: GAZ
id: GAZ:00002515

State of Arizona
type: NamedIndividual
type: geographic location
located_in: Mountain Division
definition: A state located in the southwestern region of the United States. It borders New Mexico, Utah, Nevada, California, touches Colorado, and has a 626 km international border with the States of Sonora and Baja California in Mexico.
database_cross_reference: GNISID:01779777
database_cross_reference: INCITS38:04
database_cross_reference: ISO3166-2:US-AZ
has_exact_synonym: AZ
has_obo_namespace: GAZ
id: GAZ:00002518

State of Maryland
type: NamedIndividual
type: geographic location
located_in: Middle Atlantic Division
definition: A state located in the Mid Atlantic region of the United States, bordering Virginia, West Virginia and the District of Columbia to the south and west, Pennsylvania to the north, and Delaware to the east.
database_cross_reference: GNISID:01714934
database_cross_reference: INCITS38:24
database_cross_reference: ISO3166-2:US-MD
has_exact_synonym: MD
has_obo_namespace: GAZ
id: GAZ:00002519

State of North Carolina
type: NamedIndividual
type: geographic location
located_in: South Atlantic Division
definition: A state located on the Atlantic Seaboard in the southeastern United States. The state borders South Carolina and Georgia to the south, Tennessee to the west and Virginia to the north.
database_cross_reference: GNISID:01027616
database_cross_reference: INCITS38:37
database_cross_reference: ISO3166-2:US-NC
has_exact_synonym: NC
has_exact_synonym: North Carolina
has_obo_namespace: GAZ
id: GAZ:00002520

State of Alaska
type: NamedIndividual
type: geographic location
located_in: GAZ_00000458
located_in: United States of America
definition: A state in the United States of America, in the extreme northwest portion of the North American continent. The state is bordered by Yukon Territory and British Columbia, Canada to the east, the Gulf of Alaska and the Pacific Ocean to the south, the Bering Sea, Bering Strait, and Chukchi Sea to the west, and the Beaufort Sea and the Arctic Ocean.
database_cross_reference: GNISID:01785533
database_cross_reference: INCITS38:02
database_cross_reference: ISO3166-2:US-AK
has_exact_synonym: AK
has_obo_namespace: GAZ
id: GAZ:00002521

State of South Carolina
type: NamedIndividual
type: geographic location
located_in: South Atlantic Division
definition: A state in the southern region (Deep South) of the United States. It borders Georgia to the south and North Carolina to the north.
database_cross_reference: GNISID:01779799
database_cross_reference: INCITS38:45
database_cross_reference: ISO3166-2:US-SC
has_exact_synonym: SC
has_exact_synonym: South Carolina
has_obo_namespace: GAZ
id: GAZ:00002524

State of Rhode Island
type: NamedIndividual
type: geographic location
located_in: New England Division
definition: A state in the New England region of the United States. By land Rhode Island borders Connecticut to the west and Massachusetts to the north and east. Rhode Island also shares a water border with New York to the southwest.
database_cross_reference: GNISID:01219835
database_cross_reference: INCITS38:44
database_cross_reference: ISO3166-2:US-RI
has_exact_synonym: RI
has_exact_synonym: State of Rhode Island and Providence Plantations
has_obo_namespace: GAZ
id: GAZ:00002531

State of Wyoming
type: NamedIndividual
type: geographic location
located_in: Mountain Division
definition: A state in the northwestern region of the United States. Wyoming is bordered on the north by Montana, on the east by South Dakota and Nebraska, on the south by Colorado, on the southwest by Utah, and on the west by Idaho.
database_cross_reference: GNISID:01779807
database_cross_reference: INCITS38:56
database_cross_reference: ISO3166-2:US-WY
has_exact_synonym: WY
has_obo_namespace: GAZ
id: GAZ:00002533

Commonwealth of Massachusetts
type: NamedIndividual
type: geographic location
located_in: New England Division
definition: A state located in the New England region of the northeastern United States. It borders Rhode Island and Connecticut to the south, New York to the west, and Vermont and New Hampshire to the north. To the east, it borders the Atlantic Ocean.
database_cross_reference: ISO3166-2:US-MA
has_exact_synonym: MA
has_obo_namespace: GAZ
id: GAZ:00002537

State of Minnesota
type: NamedIndividual
type: geographic location
located_in: West North Central Division
definition: A state in the Midwestern region of the United States. The state shares a Lake Superior water border with Michigan and Wisconsin on the northeast; the remainder of the eastern border is with Wisconsin. Iowa is to the south, North Dakota and South Dakota to the west, and the Canadian provinces of Ontario and Manitoba to the north.
database_cross_reference: GNISID:00662849
database_cross_reference: INCITS38:27
database_cross_reference: ISO3166-2:US-MN
has_exact_synonym: MN
has_obo_namespace: GAZ
id: GAZ:00002539

Commonwealth of Pennsylvania
type: NamedIndividual
type: geographic location
located_in: Middle Atlantic Division
definition: A state located in the Northeastern and Middle Atlantic regions of the United States. The state borders Delaware and Maryland to the south, West Virginia to the southwest, Ohio to the west, New York and Canada to the north, and New Jersey to the east.
database_cross_reference: GNISID:01779798
database_cross_reference: INCITS38:42
database_cross_reference: ISO3166-2:US-PA
has_exact_synonym: PA
has_exact_synonym: Pennsylvania
has_exact_synonym: State of Pennsylvania
has_obo_namespace: GAZ
id: GAZ:00002542

State of Oklahoma
type: NamedIndividual
type: geographic location
located_in: West South Central Division
definition: A state located in the South Central region and Southern Region of the United States of America. It is bounded on the east by Arkansas and Missouri, on the north by Kansas, on the northwest by Colorado, on the far west by New Mexico, and on the south and near-west by Texas.
database_cross_reference: GNISID:01102857
database_cross_reference: INCITS38:40
database_cross_reference: ISO3166-2:US-OK
has_exact_synonym: OK
has_obo_namespace: GAZ
id: GAZ:00002546

State of Washington
type: NamedIndividual
type: geographic location
located_in: Pacific Division
definition: The Northwestern-most state of the contiguous United States. Its northern border lies mostly along the 49th parallel, and then via marine boundaries through the Strait of Georgia, Haro Strait and Strait of Juan de Fuca, with the Canadian province of British Columbia to the north. Washington borders Oregon to the south, with the Columbia River forming most of the boundary and the 46th parallel forming the eastern part of the southern boundary. To the east Washington borders Idaho, bounded mostly by the meridian running north from the confluence of the Snake River and Clearwater River, except for the southernmost section where the border follows the Snake River. To the west of Washington lies the Pacific Ocean.
database_cross_reference: GNISID:01779804
database_cross_reference: INCITS38:53
database_cross_reference: ISO3166-2:US-WA
has_exact_synonym: WA
has_exact_synonym: Washington
has_obo_namespace: GAZ
id: GAZ:00002553

State of New Jersey
type: NamedIndividual
type: geographic location
located_in: Middle Atlantic Division
definition: A state in the Mid-Atlantic and Northeastern regions of the United States. It is bordered on the north by New York, on the east by the Atlantic Ocean, on the southwest by Delaware, and on the west by Pennsylvania. New Jersey lies within the sprawling metropolitan areas of New York and Philadelphia.
database_cross_reference: GNISID:01779795
database_cross_reference: INCITS38:34
database_cross_reference: ISO3166-2:US-NJ
has_exact_synonym: NJ
has_obo_namespace: GAZ
id: GAZ:00002557

State of Texas
type: NamedIndividual
type: geographic location
located_in: West South Central Division
definition: A state located in the South Central United States. The Rio Grande, Red River and Sabine River form natural state borders, Oklahoma on the north, Louisiana and Arkansas on the east, and the Mexican states of Chihuahua, Coahuila, Nuevo Leon, and Tamaulipas to the south.
database_cross_reference: GNISID:01779801
database_cross_reference: INCITS38:48
database_cross_reference: ISO3166-2:US-TX
has_exact_synonym: TX
has_obo_namespace: GAZ
id: GAZ:00002580

State of Wisconsin
type: NamedIndividual
type: geographic location
located_in: East North Central Division
definition: A State located in the north-central part of the United States. Wisconsin is bordered by the Montreal River; Lake Superior and Michigan to the north; by Lake Michigan to the east; by Illinois to the south; and by Iowa and Minnesota to the west. The state's boundaries include the Mississippi River and Saint Croix River in the west, and the Menominee River in the northeast Wisconsin's capital is Madison, and its largest city is Milwaukee.
database_cross_reference: GNISID:01779806
database_cross_reference: INCITS38:55
database_cross_reference: ISO3166-2:US-WI
has_exact_synonym: WI
has_exact_synonym: Wisconsin
has_obo_namespace: GAZ
id: GAZ:00002586

State of Connecticut
type: NamedIndividual
type: geographic location
located_in: New England Division
definition: A state located in the New England region of the northeastern United States of America. The state borders New York to the west and south (Long Island by sea), Massachusetts to the north, and Rhode Island to the east. Portions of southwestern Connecticut are considered part of the New York metropolitan area.
database_cross_reference: GNISID:01779780
database_cross_reference: INCITS38:09
database_cross_reference: ISO3166-2:US-CT
has_exact_synonym: CT
has_obo_namespace: GAZ
id: GAZ:00002591

State of Maine
type: NamedIndividual
type: geographic location
located_in: New England Division
definition: A state in the New England region of the northeastern United States of America, bordering the Atlantic Ocean to the southeast, New Hampshire to the southwest, the Canadian provinces of Quebec to the northwest and New Brunswick to the northeast.
database_cross_reference: GNISID:01779787
database_cross_reference: INCITS38:23
database_cross_reference: ISO3166-2:US-ME
has_exact_synonym: ME
has_exact_synonym: Main
has_obo_namespace: GAZ
id: GAZ:00002602

State of Montana
type: NamedIndividual
type: geographic location
located_in: Mountain Division
definition: A state in the Western United States. To the north, Montana and Canada share a 877 km border. The state borders the Canadian provinces of British Columbia, Alberta, and Saskatchewan. To the east, the state borders North Dakota and South Dakota. To the south is Wyoming and to the west and southwest is Idaho.
database_cross_reference: GNISID:00767982
database_cross_reference: INCITS38:30
database_cross_reference: ISO3166-2:US-MT
has_exact_synonym: MT
has_obo_namespace: GAZ
id: GAZ:00002606

State of Georgia
type: NamedIndividual
type: geographic location
located_in: South Atlantic Division
definition: Georgia is bordered on the south by Florida; on the east by the Atlantic Ocean and South Carolina; on the west by Alabama and by Florida in the extreme southwest; and on the north by Tennessee and North Carolina. The northern part of the state is in the Blue Ridge Mountains, a mountain range in the vast mountain system of the Appalachians. The central piedmont extends from the foothills to the fall line, where the rivers cascade down in elevation to the continental coastal plain of the southern part of the state.
database_cross_reference: GNISID:01705317
database_cross_reference: INCITS38:13
database_cross_reference: ISO3166-2:US-GA
has_exact_synonym: GA
has_exact_synonym: Georgia
has_obo_namespace: GAZ
id: GAZ:00002611

State of Delaware
type: NamedIndividual
type: geographic location
located_in: Middle Atlantic Division
located_in: Delmarva Peninsula
definition: A state located on the Atlantic Coast in the Mid-Atlantic region of the United States. Delaware is located in the eastern section of the Delmarva Peninsula, between Delaware Bay and Chesapeake Bay. Delaware is bounded to the north by Pennsylvania; to the east by the Delaware River, Delaware Bay, New Jersey and the Atlantic Ocean; and to the west and south by Maryland.
database_cross_reference: GNISID:01779781
database_cross_reference: INCITS38:10
database_cross_reference: ISO3166-2:US-DE
has_exact_synonym: DE
has_obo_namespace: GAZ
id: GAZ:00002878

State of Florida
type: NamedIndividual
type: geographic location
located_in: South Atlantic Division
definition: A state located in the southeastern region of the United States, bordering Alabama to the northwest and Georgia to the northeast. Much of the land mass of the state is a large peninsula with the Gulf of Mexico to the west and south, and the Atlantic Ocean to the east.
database_cross_reference: GNISID:00294478
database_cross_reference: INCITS38:12
database_cross_reference: ISO3166-2:US-FL
has_exact_synonym: Florida
has_exact_synonym: F{language: Bulgarian}
has_obo_namespace: GAZ
id: GAZ:00002888

Middle Atlantic Division
type: NamedIndividual

East North Central Division
type: NamedIndividual

State of Illinois
type: NamedIndividual
type: geographic location
located_in: East North Central Division
definition: A midwestern state of the United States of America. The Northeastern border of Illinois is Lake Michigan. Its eastern border with Indiana is all of the land west of the Wabash River, and a north-south line above Post Vincennes, or 87deg31min30secW. Its northern border with Wisconsin is fixed at 42deg30minN. Its western border with Missouri and Iowa is the Mississippi River. Its southern border with Kentucky is the Ohio River. Illinois also borders Michigan, but only via a water boundary in Lake Michigan.
database_cross_reference: GNISID:01779784
database_cross_reference: INCITS38:17
database_cross_reference: ISO3166-2:US-IL
has_exact_synonym: Illinois
has_exact_synonym: I{language: Bulgarian}
has_obo_namespace: GAZ
id: GAZ:00003142

State of Michigan
type: NamedIndividual
type: geographic location
located_in: East North Central Division
definition: A Midwestern state of the United States of America. Michigan consists of two peninsulas that lie between 82deg30minW to about 90deg30minW longitude, and are separated by the Straits of Mackinac. With the exception of two small areas that are drained by the Mississippi River by way of the Wisconsin River in the Upper Peninsula and by way of the Kankakee-Illinois River in the Lower Peninsula, Michigan is drained by the Great Lakes-Saint Lawrence watershed. The Great Lakes that border Michigan from east to west are Lake Erie, Lake Huron, Lake Michigan and Lake Superior. The state is bounded on the south by the states of Ohio and Indiana, sharing land and water boundaries with both.
database_cross_reference: GNISID:01779789
database_cross_reference: INCITS38:26
database_cross_reference: ISO3166-2:US-MI
has_exact_synonym: MI
has_exact_synonym: Michigan
has_obo_namespace: GAZ
id: GAZ:00003152

Commonwealth of Virginia
type: NamedIndividual
type: geographic location
located_in: South Atlantic Division
definition: A state on the Atlantic Coast of the Southern United States. Virginia is bordered by Maryland and the District of Columbia to the north and east; the Atlantic Ocean to the east; by North Carolina and Tennessee to the south; by Kentucky to the west and by West Virginia to the north and west. Due to a peculiarity of Virginia's original charter, its boundary with Maryland does not extend past the low-water mark of the southern shore of the Potomac River, so Maryland and the District of Columbia contain the whole width of the river rather than splitting it between them and Virginia. The southern border is defined as the 36deg30min parallel north.
database_cross_reference: GNISID:01779803
database_cross_reference: INCITS38:51
database_cross_reference: ISO3166-2:UA-VA
has_exact_synonym: VA
has_exact_synonym: Virginia
has_obo_namespace: GAZ
id: GAZ:00003171

Pacific Division
type: NamedIndividual

West North Central Division
type: NamedIndividual

Greater Antilles
type: NamedIndividual

West South Central Division
type: NamedIndividual

East South Central Division
type: NamedIndividual

South Atlantic Division
type: NamedIndividual

Mountain Division
type: NamedIndividual

State of Hawaii
type: NamedIndividual
type: geographic location
located_in: United States of America
located_in: Hawaiian Islands
located_in: Polynesia
definition: A state in the United States, located on an archipelago in the central Pacific Ocean southwest of the continental United States, southeast of Japan, and northeast of Australia.
database_cross_reference: GNISID:01779782
database_cross_reference: INCITS38:15
database_cross_reference: ISO3166-2:US-HI
has_exact_synonym: HI
has_obo_namespace: GAZ
id: GAZ:00003939

Northern Mariana Islands
type: NamedIndividual

Virgin Islands Archipelago
type: NamedIndividual

State of Tennessee
type: NamedIndividual
type: geographic location
located_in: East South Central Division
definition: A state located in the Southern United States. The capital city is Nashville, and the largest city is Memphis. Tennessee borders eight other states: Kentucky and Virginia to the north; North Carolina to the east; Georgia, Alabama and Mississippi on the south; Arkansas and Missouri on the Mississippi River to the west.
database_cross_reference: GNISID:01325873
database_cross_reference: INCITS38:47
database_cross_reference: ISO3166-2:US-TN
has_exact_synonym: TN
has_exact_synonym: Tennessee
has_obo_namespace: GAZ
id: GAZ:00004411

State of Utah
type: NamedIndividual
type: geographic location
located_in: Mountain Division
definition: A western state of the United States. Utah has three distinct geological regions: the Rocky Mountains, the Great Basin, and the Colorado Plateau.
database_cross_reference: GNISID:01455989
database_cross_reference: INCITS38:49
database_cross_reference: ISO3166-2:US-UT
has_exact_synonym: UT
has_obo_namespace: GAZ
id: GAZ:00004413

State of West Virginia
type: NamedIndividual
type: geographic location
located_in: South Atlantic Division
definition: A state in the Appalachian, Upland South, and Mid-Atlantic regions of the United States, bordered by Virginia on the southeast, Kentucky on the southwest, Ohio on the northwest, and Pennsylvania and Maryland on the northeast. The capital and largest city is Charleston.
database_cross_reference: GNISID:01779805
database_cross_reference: INCITS38:54
database_cross_reference: ISO3166-2:US-WV
has_exact_synonym: WV
has_exact_synonym: West Virginia
has_obo_namespace: GAZ
id: GAZ:00004414

State of Ohio
type: NamedIndividual
type: geographic location
located_in: East North Central Division
definition: A Midwestern state of the United States. Ohio's southern border is defined by the Ohio River (with the border being at the 1793 low-water mark on the north side of the river), and much of the northern border is defined by Lake Erie. Ohio's neighbors are Pennsylvania to the east, Michigan to the northwest, Ontario Canada, to the north, Indiana to the west, Kentucky on the south, and West Virginia on the southeast.
database_cross_reference: GNISID:01085497
database_cross_reference: INCITS38:39
database_cross_reference: ISO3166-2:US-OH
has_exact_synonym: OH
has_exact_synonym: Ohio
has_obo_namespace: GAZ
id: GAZ:00004421

State of New Mexico
type: NamedIndividual
type: geographic location
located_in: Mountain Division
definition: A state located in the southwestern region of the United States.
database_cross_reference: GNISID:00897535
database_cross_reference: INCITS38:35
database_cross_reference: ISO3166-2:US-NM
has_exact_synonym: NM
has_obo_namespace: GAZ
id: GAZ:00004427

State of New Hampshire
type: NamedIndividual
type: geographic location
located_in: New England Division
definition: A state in the New England region of the northeastern United States of America. It borders Massachusetts to the south, Vermont to the west, Maine to the east, and the Canadian province of Quebec to the north.
database_cross_reference: GNISID:01779794
database_cross_reference: INCITS38:33
database_cross_reference: ISO3166-2:US-NH
has_exact_synonym: NH
has_obo_namespace: GAZ
id: GAZ:00004428

State of Vermont
type: NamedIndividual
type: geographic location
located_in: New England Division
definition: A state in the New England region of the northeastern United States of America. It is bordered by Massachusetts to the south, New Hampshire to the east, New York to the west, and the Canadian province of Quebec to the north.
database_cross_reference: GNISID:01779802
database_cross_reference: INCITS38:50
database_cross_reference: ISO3166-2:US-VT
has_exact_synonym: VT
has_obo_namespace: GAZ
id: GAZ:00004429

State of Mississippi
type: NamedIndividual
type: geographic location
located_in: East South Central Division
definition: A state located in the Deep South of the United States. Jackson is the state capital and largest city. Mississippi is bordered on the north by Tennessee, on the east by Alabama, on the south by Louisiana and a narrow coast on the Gulf of Mexico, and on the west, across the Mississippi River, by Louisiana and Arkansas.
database_cross_reference: GNISID:01779790
database_cross_reference: INCITS38:28
database_cross_reference: ISO3166-2:US-MS
has_exact_synonym: MS
has_exact_synonym: Mississippi
has_obo_namespace: GAZ
id: GAZ:00004430

State of Missouri
type: NamedIndividual
type: geographic location
located_in: West North Central Division
definition: A state in the Midwest region of the United States. Missouri is bounded on the north by Iowa; on the east, across the Mississippi River, by Illinois, Kentucky, and Tennessee; on the south by Arkansas; and on the west by Oklahoma, Kansas, and Nebraska (the last across the Missouri River).
database_cross_reference: GNISID:01779791
database_cross_reference: INCITS38:29
database_cross_reference: ISO3166-2:US-MO
has_exact_synonym: MO
has_obo_namespace: GAZ
id: GAZ:00004431

State of Louisiana
type: NamedIndividual
type: geographic location
located_in: West South Central Division
definition: A state located in the southern region of the United States of America. Louisiana is bordered to the west by the State of Texas; to the north by Arkansas; to the east by the State of Mississippi; and to the south by the Gulf of Mexico.
database_cross_reference: GNISID:01629543
database_cross_reference: INCITS38:22
database_cross_reference: ISO3166-2:US-LA
has_exact_synonym: LA
has_obo_namespace: GAZ
id: GAZ:00004432

State of Kansas
type: NamedIndividual
type: geographic location
located_in: West North Central Division
definition: A state in the central region of the United States of America. Kansas is bordered by Nebraska on the north; Missouri on the east; Oklahoma on the south; and Colorado on the west.
database_cross_reference: GNISID:00481813
database_cross_reference: INCITS38:20
database_cross_reference: ISO3166-2:US-KS
has_exact_synonym: KS
has_obo_namespace: GAZ
id: GAZ:00004435

State of Iowa
type: NamedIndividual
type: geographic location
located_in: West North Central Division
definition: A state located in the Midwestern region of the United States of America. Iowa is bordered by the Mississippi River on the east; the Missouri River and the Big Sioux River on the west; the northern boundary is a line along 43 degrees, 30 minutes north latitude. The southern border is the Des Moines River and a line along approximately 40 degrees 35 minutes north.
database_cross_reference: GNISID:01779785
database_cross_reference: INCITS38:19
database_cross_reference: ISO3166-2:US-IA
has_exact_synonym: IA
has_obo_namespace: GAZ
id: GAZ:00004438

State of Indiana
type: NamedIndividual
type: geographic location
located_in: East North Central Division
definition: A midwestern state of the United States of America. Indiana is bounded on the north by Lake Michigan and the state of Michigan; on the east by Ohio; on the south by Kentucky, with which it shares the Ohio River as a border; and on the west by Illinois. Indiana is one of the Great Lakes states.
database_cross_reference: GNISID:00448508
database_cross_reference: INCITS38:18
database_cross_reference: ISO3166-2:US-IN
has_exact_synonym: IN
has_exact_synonym: Indiana
has_obo_namespace: GAZ
id: GAZ:00004439

Commonwealth of Kentucky
type: NamedIndividual
type: geographic location
located_in: East South Central Division
definition: A state located in the East Central United States of America. Kentucky borders on seven states, from both the Midwest and the Southeast. West Virginia lies to the east, Virginia to the southeast, Tennessee to the south, Missouri to the west, Illinois and Indiana to the northwest, and Ohio to the north and northeast.
database_cross_reference: ISO3166-2:US-KY
has_exact_synonym: KY
has_exact_synonym: Kentucky
has_exact_synonym: State of Kentucky {alternative name}
has_obo_namespace: GAZ
id: GAZ:00004440

State of Arkansas
type: NamedIndividual
type: geographic location
located_in: West South Central Division
definition: A state located in the southern region of the United States. Arkansas shares a border with six states, with its eastern border largely defined by the Mississippi River. Arkansas shares its southern border with Louisiana, its northern border with Missouri, its eastern border with Tennessee and Mississippi, and its western border with Texas and Oklahoma.
database_cross_reference: GNISID:00068085
database_cross_reference: INCITS38:05
database_cross_reference: ISO3166-2:US-AR
has_exact_synonym: AR
has_obo_namespace: GAZ
id: GAZ:00004441

State of North Dakota
type: NamedIndividual
type: geographic location
located_in: West North Central Division
definition: A state located in the Midwestern and Western regions of the United States of America.
database_cross_reference: INCITS38:38
database_cross_reference: ISO3166-2:US-ND
has_exact_synonym: ND
has_obo_namespace: GAZ
id: GAZ:00004442

State of South Dakota
type: NamedIndividual
type: geographic location
located_in: West North Central Division
definition: A state located in the Midwestern region of the United States of America.
database_cross_reference: GNISID:01785534
database_cross_reference: INCITS38:46
database_cross_reference: ISO3166-2:US-SD
has_exact_synonym: SD
has_obo_namespace: GAZ
id: GAZ:00004443

State of Nevada
type: NamedIndividual
type: geographic location
located_in: Mountain Division
definition: A state located in the western region of the United States of America. Nevada is almost entirely within the Basin and Range Province, and is broken up by many north-south mountain ranges. Most of these ranges have endorheic valleys between them, which belies the image portrayed by the term Great Basin. The southern third of the state, where the Las Vegas area is situated, is within the Mojave Desert.
database_cross_reference: GNISID:01779793
database_cross_reference: INCITS38:32
database_cross_reference: ISO3166-2:US-NV
has_exact_synonym: NV
has_obo_namespace: GAZ
id: GAZ:00004444

State of Nebraska
type: NamedIndividual
type: geographic location
located_in: West North Central Division
definition: A state located on the Great Plains of the Midwestern United States and Western United States.
database_cross_reference: GNISID:01779792
database_cross_reference: INCITS38:31
database_cross_reference: ISO3166-2:US-NE
has_exact_synonym: NE
has_obo_namespace: GAZ
id: GAZ:00005070

Polynesia
type: NamedIndividual

Micronesia
type: NamedIndividual

State of Colorado
type: NamedIndividual
type: geographic location
located_in: Mountain Division
definition: A state located in the Rocky Mountain region of the United States of America.
database_cross_reference: GNISID:01779779
database_cross_reference: INCITS38:08
database_cross_reference: ISO3166-2:US-CO
has_exact_synonym: CO
has_obo_namespace: GAZ
id: GAZ:00006254

State of Idaho
type: NamedIndividual
type: geographic location
located_in: Mountain Division
definition: A state in the Pacific Northwest region of the United States of America. Idaho borders six states and one Canadian province, but does not border the Pacific Ocean at any point and is not, as such, a coastal state. The states of Washington and Oregon are to the west, Nevada and Utah are to the south, and Montana and Wyoming are to the east. The province of British Columbia, to the north, also shares a small (77 km) border with Idaho.
database_cross_reference: GNISID:01779783
database_cross_reference: INCITS38:16
database_cross_reference: ISO3166-2:US-ID
has_exact_synonym: ID
has_obo_namespace: GAZ
id: GAZ:00006291

New England Division
type: NamedIndividual

State of Alabama
type: NamedIndividual
type: geographic location
located_in: East South Central Division
definition: A state located in the southern region of the United States of America. It is bordered by Tennessee to the north, Georgia to the east, Florida and the Gulf of Mexico to the south, and Mississippi to the west.
database_cross_reference: GNISID:01779775
database_cross_reference: INCITS38:01
database_cross_reference: ISO3166-2:US-AL
has_exact_synonym: Alabama
has_exact_synonym: A{language: Bulgarian}
has_obo_namespace: GAZ
id: GAZ:00006881

Samoan Archipelago
type: NamedIndividual

Wake Island
type: NamedIndividual

Marshall Islands
type: NamedIndividual

Delmarva Peninsula
type: NamedIndividual
type: geographic location

Southern Marianas Islands
type: NamedIndividual

University of Maryland, College Park
type: NamedIndividual
type: organization
located_in: GAZ_00006320
definition: A public research university located in the city of College Park in Prince George's County, Maryland.
has_obo_namespace: GAZ
id: GAZ:00157006

example to be eventually removed
type: NamedIndividual
type: curation status specification
editor preferred term: example to be eventually removed

failed exploratory term
type: Thing
type: NamedIndividual
type: obsolescence reason specification
editor preferred term: failed exploratory term
definition: The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job
definition editor: Person:Alan Ruttenberg

metadata complete
type: NamedIndividual
type: curation status specification
editor preferred term: metadata complete
definition: Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete.

organizational term
type: NamedIndividual
type: curation status specification
editor preferred term: organizational term
definition: Term created to ease viewing/sort terms for development purpose, and will not be included in a release
definition: term created to ease viewing/sort terms for development purpose, and will not be included in a release
definition editor: PERSON:Alan Ruttenberg

ready for release
type: NamedIndividual
type: curation status specification
editor preferred term: ready for release
has curation status: pending final vetting
definition: Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking "ready_for_release" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed "ready_for_release" will also derived from a chain of ancestor classes that are also "ready_for_release."

metadata incomplete
type: NamedIndividual
type: curation status specification
editor preferred term: metadata incomplete
definition: Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors.

uncurated
type: NamedIndividual
type: curation status specification
editor preferred term: uncurated
definition: Nothing done yet beyond assigning a unique class ID and proposing a preferred term.

pending final vetting
type: NamedIndividual
type: curation status specification
editor preferred term: pending final vetting
definition: All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor.

obsolete_core
type: NamedIndividual
definition: Core is an instance of a grouping of terms from an ontology or ontologies. It is used by the ontology to identify main classes.
definition editor: PERSON: Alan Ruttenberg
definition editor: PERSON: Melanie Courtot
has obsolescence reason: placeholder removed
deprecated: true

placeholder removed
type: Thing
type: NamedIndividual
type: obsolescence reason specification
editor preferred term: placeholder removed

terms merged
type: NamedIndividual
type: obsolescence reason specification
editor preferred term: terms merged
editor note: An editor note should explain what were the merged terms and the reason for the merge.

term imported
type: NamedIndividual
type: obsolescence reason specification
editor preferred term: term imported
editor note: This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use.

term split
type: NamedIndividual
type: obsolescence reason specification
editor preferred term: term split
editor note: This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created.

obsolete_other
type: NamedIndividual
editor note: This is to be used if none of the existing instances cover the reason for obsolescence. An editor note should indicate this new reason.
editor note: We expect to be able to mine these new reasons and add instances as required.
deprecated: true

universal
type: NamedIndividual
type: denotator type
editor preferred term: universal
editor note: Hard to give a definition for. Intuitively a "natural kind" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents.
definition editor: Alan Ruttenberg
definition source: A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf

defined class
type: NamedIndividual
type: denotator type
editor preferred term: defined class
definition: A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal
editor note: "definitions", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal.
definition editor: Alan Ruttenberg

named class expression
type: NamedIndividual
type: denotator type
editor preferred term: named class expression
definition: A named class expression is a logical expression that is given a name. The name can be used in place of the expression.
editor note: named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions
definition editor: Alan Ruttenberg

to be replaced with external ontology term
type: NamedIndividual
type: curation status specification
editor preferred term: to be replaced with external ontology term
definition: Terms with this status should eventually replaced with a term from another ontology.
definition editor: Alan Ruttenberg
definition source: group:OBI

requires discussion
type: NamedIndividual
type: curation status specification
editor preferred term: requires discussion
has curation status: pending final vetting
definition: A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues.
definition editor: Alan Ruttenberg
definition source: group:OBI

out of scope
type: NamedIndividual
type: obsolescence reason specification
definition: The term was added to the ontology on the assumption it was in scope, but it turned out later that it was not.
editor note: This obsolesence reason should be used conservatively. Typical valid examples are: un-necessary grouping classes in disease ontologies, a phenotype term added on the assumption it was a disease.
definition editor: http://orcid.org/0000-0001-5208-3432
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/77
ontology term requester: https://orcid.org/0000-0001-5208-3432

domain entity does not exist
type: NamedIndividual
type: obsolescence reason specification
definition: The term was added to the ontology on the assumption it was a valid domain entity, but it turns out the entity does not exist in reality.
editor note: This obsolesence reason should be used conservatively. For example: Obsoleting class that describes a breed of cow based on a record in an existing database, that was later retracted as faulty (breed does not exist). Do not use this term to obsolete a historic concept (that was once valid, but not anymore).
definition editor: http://orcid.org/0000-0002-4142-7153
term tracker item: https://github.com/information-artifact-ontology/ontology-metadata/issues/136
ontology term requester: https://orcid.org/0000-0002-4142-7153

Abkhazian
type: NamedIndividual
type: language
alternative term: Аҧсуа бызшәа @ab
alternative term: Аҧсшәа @ab
ISO 639-1 code: ab
ISO 639-2/B code: abk
ISO 639-2/T code: abk

Achinese
type: NamedIndividual
type: language
alternative term: بهسا اچيه
ISO 639-2/B code: ace
ISO 639-2/T code: ace

Acoli
type: NamedIndividual
type: language
alternative term: Lwo
ISO 639-2/B code: ach
ISO 639-2/T code: ach

Adangme
type: NamedIndividual
type: language
alternative term: Dangme
ISO 639-2/B code: ada
ISO 639-2/T code: ada

Adyghe
type: NamedIndividual
type: language
alternative term: Adygei
alternative term: Адыгабзэ
alternative term: Кӏахыбзэ
ISO 639-2/B code: ady
ISO 639-2/T code: ady

Afrihili
type: NamedIndividual
type: language
alternative term: El-Afrihili
ISO 639-2/B code: afh
ISO 639-2/T code: afh

Afrikaans
type: NamedIndividual
type: language
alternative term: Afrikaans @af
ISO 639-1 code: af
ISO 639-2/B code: afr
ISO 639-2/T code: afr

Ainu
type: NamedIndividual
type: language
alternative term: アイヌ・イタㇰ
ISO 639-2/B code: ain
ISO 639-2/T code: ain

Akan
type: NamedIndividual
type: language
alternative term: Akan @ak
ISO 639-1 code: ak
ISO 639-2/B code: aka
ISO 639-2/T code: aka

Akkadian
type: NamedIndividual
type: language
alternative term: 𒀝𒅗𒁺𒌑
ISO 639-2/B code: akk
ISO 639-2/T code: akk

Albanian
type: NamedIndividual
type: language
alternative term: Shqip @sq
ISO 639-1 code: sq
ISO 639-2/B code: alb
ISO 639-2/T code: sqi

Aleut
type: NamedIndividual
type: language
alternative term: Уна́ӈам тунуу́
alternative term: Унаӈан умсуу
ISO 639-2/B code: ale
ISO 639-2/T code: ale

Southern Altai
type: NamedIndividual
type: language
alternative term: Алтай тили
ISO 639-2/B code: alt
ISO 639-2/T code: alt

Amharic
type: NamedIndividual
type: language
alternative term: አማርኛ @am
ISO 639-1 code: am
ISO 639-2/B code: amh
ISO 639-2/T code: amh

English, Old (ca.450–1100)
type: NamedIndividual
type: language
alternative term: Anglisc
alternative term: Englisc
alternative term: Ænglisc
ISO 639-2/B code: ang
ISO 639-2/T code: ang

Angika
type: NamedIndividual
type: language
ISO 639-2/B code: anp
ISO 639-2/T code: anp

Arabic
type: NamedIndividual
type: language
alternative term: العَرَبِيَّة @ar
ISO 639-1 code: ar
ISO 639-2/B code: ara
ISO 639-2/T code: ara

Official Aramaic (700–300 BCE)
type: NamedIndividual
type: language
alternative term: Imperial Aramaic (700–300 BCE)
ISO 639-2/B code: arc
ISO 639-2/T code: arc

Aragonese
type: NamedIndividual
type: language
alternative term: aragonés @an
ISO 639-1 code: an
ISO 639-2/B code: arg
ISO 639-2/T code: arg

Armenian
type: NamedIndividual
type: language
alternative term: Հայերեն @hy
alternative term: Հայերէն @hy
ISO 639-1 code: hy
ISO 639-2/B code: arm
ISO 639-2/T code: hye

Mapudungun
type: NamedIndividual
type: language
alternative term: Mapuche
ISO 639-2/B code: arn
ISO 639-2/T code: arn

Arapaho
type: NamedIndividual
type: language
alternative term: Hinónoʼeitíít
ISO 639-2/B code: arp
ISO 639-2/T code: arp

Arawak
type: NamedIndividual
type: language
alternative term: Lokono
ISO 639-2/B code: arw
ISO 639-2/T code: arw

Assamese
type: NamedIndividual
type: language
alternative term: অসমীয়া @as
ISO 639-1 code: as
ISO 639-2/B code: asm
ISO 639-2/T code: asm

Asturian
type: NamedIndividual
type: language
alternative term: Asturianu
alternative term: Asturleonese
alternative term: Bable
alternative term: Leonese
ISO 639-2/B code: ast
ISO 639-2/T code: ast

Avaric
type: NamedIndividual
type: language
alternative term: Авар мацӏ @av
alternative term: Магӏарул мацӏ @av
ISO 639-1 code: av
ISO 639-2/B code: ava
ISO 639-2/T code: ava

Avestan
type: NamedIndividual
type: language
ISO 639-1 code: ae
ISO 639-2/B code: ave
ISO 639-2/T code: ave

Awadhi
type: NamedIndividual
type: language
alternative term: अवधी
ISO 639-2/B code: awa
ISO 639-2/T code: awa

Aymara
type: NamedIndividual
type: language
alternative term: Aymar aru @ay
ISO 639-1 code: ay
ISO 639-2/B code: aym
ISO 639-2/T code: aym

Azerbaijani
type: NamedIndividual
type: language
alternative term: Azərbaycan dili @az
alternative term: Азәрбајҹан дили @az
alternative term: آذربایجان دیلی @az
ISO 639-1 code: az
ISO 639-2/B code: aze
ISO 639-2/T code: aze

Bashkir
type: NamedIndividual
type: language
alternative term: Başqort tele @ba
alternative term: Башҡорт теле @ba
ISO 639-1 code: ba
ISO 639-2/B code: bak
ISO 639-2/T code: bak

Baluchi
type: NamedIndividual
type: language
alternative term: بلوچی
ISO 639-2/B code: bal
ISO 639-2/T code: bal

Bambara
type: NamedIndividual
type: language
alternative term: ߓߊߡߊߣߊߣߞߊߣ @bm
ISO 639-1 code: bm
ISO 639-2/B code: bam
ISO 639-2/T code: bam

Balinese
type: NamedIndividual
type: language
alternative term: ᬩᬲᬩᬮᬶ
alternative term: ᬪᬵᬱᬩᬮᬶ
ISO 639-2/B code: ban
ISO 639-2/T code: ban

Basque
type: NamedIndividual
type: language
alternative term: euskara @eu
ISO 639-1 code: eu
ISO 639-2/B code: baq
ISO 639-2/T code: eus

Basa
type: NamedIndividual
type: language
alternative term: Mbene
alternative term: Ɓasaá
ISO 639-2/B code: bas
ISO 639-2/T code: bas

Beja
type: NamedIndividual
type: language
alternative term: Bedawiyet
alternative term: Bidhaawyeet
ISO 639-2/B code: bej
ISO 639-2/T code: bej

Belarusian
type: NamedIndividual
type: language
alternative term: Беларуская мова @be
ISO 639-1 code: be
ISO 639-2/B code: bel
ISO 639-2/T code: bel

Bemba
type: NamedIndividual
type: language
alternative term: Chibemba
ISO 639-2/B code: bem
ISO 639-2/T code: bem

Bengali
type: NamedIndividual
type: language
alternative term: বাংলা @bn
ISO 639-1 code: bn
ISO 639-2/B code: ben
ISO 639-2/T code: ben

Bhojpuri
type: NamedIndividual
type: language
alternative term: भोजपुरी
ISO 639-2/B code: bho
ISO 639-2/T code: bho

Bikol
type: NamedIndividual
type: language
ISO 639-2/B code: bik
ISO 639-2/T code: bik

Bini
type: NamedIndividual
type: language
alternative term: Edo
alternative term: Ẹ̀dó
ISO 639-2/B code: bin
ISO 639-2/T code: bin

Bislama
type: NamedIndividual
type: language
ISO 639-1 code: bi
ISO 639-2/B code: bis
ISO 639-2/T code: bis

Siksika
type: NamedIndividual
type: language
alternative term: ᓱᖽᐧᖿ
ISO 639-2/B code: bla
ISO 639-2/T code: bla

Tibetan
type: NamedIndividual
type: language
alternative term: བོད་སྐད་ @bo
alternative term: ལྷ་སའི་སྐད་ @bo
ISO 639-1 code: bo
ISO 639-2/B code: tib
ISO 639-2/T code: bod

Bosnian
type: NamedIndividual
type: language
alternative term: bosanski @bs
alternative term: босански @bs
ISO 639-1 code: bs
ISO 639-2/B code: bos
ISO 639-2/T code: bos

Braj
type: NamedIndividual
type: language
ISO 639-2/B code: bra
ISO 639-2/T code: bra

Breton
type: NamedIndividual
type: language
alternative term: Brezhoneg @br
ISO 639-1 code: br
ISO 639-2/B code: bre
ISO 639-2/T code: bre

Buriat
type: NamedIndividual
type: language
alternative term: буряад хэлэн
ISO 639-2/B code: bua
ISO 639-2/T code: bua

Buginese
type: NamedIndividual
type: language
alternative term: ᨅᨔ ᨕᨘᨁᨗ
ISO 639-2/B code: bug
ISO 639-2/T code: bug

Bulgarian
type: NamedIndividual
type: language
alternative term: български език @bg
ISO 639-1 code: bg
ISO 639-2/B code: bul
ISO 639-2/T code: bul

Burmese
type: NamedIndividual
type: language
alternative term: မြန်မာစကား @my
alternative term: မြန်မာစာ @my
ISO 639-1 code: my
ISO 639-2/B code: bur
ISO 639-2/T code: mya

Blin
type: NamedIndividual
type: language
alternative term: Bilin
alternative term: ብሊና
alternative term: ብሊን
ISO 639-2/B code: byn
ISO 639-2/T code: byn

Caddo
type: NamedIndividual
type: language
alternative term: Hasí:nay
ISO 639-2/B code: cad
ISO 639-2/T code: cad

Galibi Carib
type: NamedIndividual
type: language
alternative term: Kari'nja
ISO 639-2/B code: car
ISO 639-2/T code: car

Catalan
type: NamedIndividual
type: language
alternative term: Valencian
alternative term: català @ca
ISO 639-1 code: ca
ISO 639-2/B code: cat
ISO 639-2/T code: cat

Cebuano
type: NamedIndividual
type: language
alternative term: Sinugbuanong Binisayâ
ISO 639-2/B code: ceb
ISO 639-2/T code: ceb

Czech
type: NamedIndividual
type: language
alternative term: český jazyk @cs
alternative term: čeština @cs
ISO 639-1 code: cs
ISO 639-2/B code: cze
ISO 639-2/T code: ces

Chamorro
type: NamedIndividual
type: language
alternative term: Finu' Chamoru @ch
ISO 639-1 code: ch
ISO 639-2/B code: cha
ISO 639-2/T code: cha

Chibcha
type: NamedIndividual
type: language
alternative term: Muysccubun
ISO 639-2/B code: chb
ISO 639-2/T code: chb

Chechen
type: NamedIndividual
type: language
alternative term: Нохчийн мотт @ce
alternative term: نَاخچیین موٓتت @ce
alternative term: ნახჩიე მუოთთ @ce
ISO 639-1 code: ce
ISO 639-2/B code: che
ISO 639-2/T code: che

Chagatai
type: NamedIndividual
type: language
alternative term: جغتای
ISO 639-2/B code: chg
ISO 639-2/T code: chg

Chinese
type: NamedIndividual
type: language
alternative term: 中文 @zh
alternative term: 汉语 @zh
alternative term: 漢語 @zh
ISO 639-1 code: zh
ISO 639-2/B code: chi
ISO 639-2/T code: zho

Chuukese
type: NamedIndividual
type: language
ISO 639-2/B code: chk
ISO 639-2/T code: chk

Mari
type: NamedIndividual
type: language
alternative term: марий йылме
ISO 639-2/B code: chm
ISO 639-2/T code: chm

Chinook jargon
type: NamedIndividual
type: language
alternative term: chinook lelang
alternative term: chinuk wawa
alternative term: lelang
alternative term: wawa
ISO 639-2/B code: chn
ISO 639-2/T code: chn

Choctaw
type: NamedIndividual
type: language
alternative term: Chahta'
ISO 639-2/B code: cho
ISO 639-2/T code: cho

Chipewyan
type: NamedIndividual
type: language
alternative term: Dene Suline
alternative term: ᑌᓀᓱᒼᕄᓀ (Dënesųłiné)
ISO 639-2/B code: chp
ISO 639-2/T code: chp

Cherokee
type: NamedIndividual
type: language
alternative term: ᏣᎳᎩ ᎦᏬᏂᎯᏍᏗ
ISO 639-2/B code: chr
ISO 639-2/T code: chr

Church Slavic
type: NamedIndividual
type: language
alternative term: Church Slavonic
alternative term: Old Bulgarian
alternative term: Old Church Slavonic
alternative term: Old Slavonic
alternative term: Славе́нскїй ѧ҆зы́къ @cu
ISO 639-1 code: cu
ISO 639-2/B code: chu
ISO 639-2/T code: chu

Chuvash
type: NamedIndividual
type: language
alternative term: Чӑвашла @cv
ISO 639-1 code: cv
ISO 639-2/B code: chv
ISO 639-2/T code: chv

Cheyenne
type: NamedIndividual
type: language
alternative term: Tsėhésenėstsestȯtse
ISO 639-2/B code: chy
ISO 639-2/T code: chy

Montenegrin
type: NamedIndividual
type: language
alternative term: crnogorski
alternative term: црногорски
ISO 639-2/B code: cnr
ISO 639-2/T code: cnr

Coptic
type: NamedIndividual
type: language
alternative term: ϯⲙⲉⲑⲣⲉⲙⲛ̀ⲭⲏⲙⲓ
alternative term: ⲧⲙⲛ̄ⲧⲣⲙ̄ⲛ̄ⲕⲏⲙⲉ
ISO 639-2/B code: cop
ISO 639-2/T code: cop

Cornish
type: NamedIndividual
type: language
alternative term: Kernowek @kw
ISO 639-1 code: kw
ISO 639-2/B code: cor
ISO 639-2/T code: cor

Corsican
type: NamedIndividual
type: language
alternative term: Corsu @co
alternative term: Lingua corsa @co
ISO 639-1 code: co
ISO 639-2/B code: cos
ISO 639-2/T code: cos

Cree
type: NamedIndividual
type: language
ISO 639-1 code: cr
ISO 639-2/B code: cre
ISO 639-2/T code: cre

Crimean Tatar
type: NamedIndividual
type: language
alternative term: Crimean Turkish
alternative term: Къырымтатар тили
alternative term: Къырымтатарджа
alternative term: Ҡырымтатар тили
alternative term: Ҡырымтатарҗа
ISO 639-2/B code: crh
ISO 639-2/T code: crh

Kashubian
type: NamedIndividual
type: language
alternative term: Kaszëbsczi jãzëk
ISO 639-2/B code: csb
ISO 639-2/T code: csb

Welsh
type: NamedIndividual
type: language
alternative term: Cymraeg @cy
alternative term: y Gymraeg @cy
ISO 639-1 code: cy
ISO 639-2/B code: wel
ISO 639-2/T code: cym

Dakota
type: NamedIndividual
type: language
alternative term: Dakhótiyapi
alternative term: Dakȟótiyapi
ISO 639-2/B code: dak
ISO 639-2/T code: dak

Danish
type: NamedIndividual
type: language
alternative term: dansk @da
ISO 639-1 code: da
ISO 639-2/B code: dan
ISO 639-2/T code: dan

Dargwa
type: NamedIndividual
type: language
alternative term: дарган мез
ISO 639-2/B code: dar
ISO 639-2/T code: dar

Delaware
type: NamedIndividual
type: language
ISO 639-2/B code: del
ISO 639-2/T code: del

Slave (Athapascan)
type: NamedIndividual
type: language
alternative term: Dene K'e
ISO 639-2/B code: den
ISO 639-2/T code: den

German
type: NamedIndividual
type: language
alternative term: Deutsch @de
ISO 639-1 code: de
ISO 639-2/B code: ger
ISO 639-2/T code: deu

Dogrib
type: NamedIndividual
type: language
alternative term: ڈوگرى
alternative term: डोगरी
ISO 639-2/B code: dgr
ISO 639-2/T code: dgr

Dinka
type: NamedIndividual
type: language
alternative term: Thuɔŋjäŋ
ISO 639-2/B code: din
ISO 639-2/T code: din

Divehi
type: NamedIndividual
type: language
alternative term: Dhivehi
alternative term: Maldivian
alternative term: ދިވެހި @dv
alternative term: ދިވެހިބަސް @dv
ISO 639-1 code: dv
ISO 639-2/B code: div
ISO 639-2/T code: div

Dogri
type: NamedIndividual
type: language
alternative term: ڈوگرى
alternative term: डोगरी
ISO 639-2/B code: doi
ISO 639-2/T code: doi

Lower Sorbian
type: NamedIndividual
type: language
alternative term: Dolnoserbski
alternative term: Dolnoserbšćina
ISO 639-2/B code: dsb
ISO 639-2/T code: dsb

Duala
type: NamedIndividual
type: language
ISO 639-2/B code: dua
ISO 639-2/T code: dua

Dutch, Middle (ca. 1050–1350)
type: NamedIndividual
type: language
ISO 639-2/B code: dum
ISO 639-2/T code: dum

Dutch
type: NamedIndividual
type: language
alternative term: Flemish
alternative term: Nederlands @nl
alternative term: Vlaams @nl
ISO 639-1 code: nl
ISO 639-2/B code: dut
ISO 639-2/T code: nld

Dyula
type: NamedIndividual
type: language
alternative term: Julakan
ISO 639-2/B code: dyu
ISO 639-2/T code: dyu

Dzongkha
type: NamedIndividual
type: language
alternative term: རྫོང་ཁ་ @dz
ISO 639-1 code: dz
ISO 639-2/B code: dzo
ISO 639-2/T code: dzo

Efik
type: NamedIndividual
type: language
ISO 639-2/B code: efi
ISO 639-2/T code: efi

Egyptian (Ancient)
type: NamedIndividual
type: language
ISO 639-2/B code: egy
ISO 639-2/T code: egy

Ekajuk
type: NamedIndividual
type: language
ISO 639-2/B code: eka
ISO 639-2/T code: eka

Greek, Modern (1453–)
type: NamedIndividual
type: language
alternative term: Νέα Ελληνικά @el
ISO 639-1 code: el
ISO 639-2/B code: gre
ISO 639-2/T code: ell

Elamite
type: NamedIndividual
type: language
ISO 639-2/B code: elx
ISO 639-2/T code: elx

English
type: NamedIndividual
type: language
alternative term: English
ISO 639-1 code: en
ISO 639-2/B code: eng
ISO 639-2/T code: eng

English, Middle (1100–1500)
type: NamedIndividual
type: language
ISO 639-2/B code: enm
ISO 639-2/T code: enm

Esperanto
type: NamedIndividual
type: language
alternative term: Esperanto @eo
ISO 639-1 code: eo
ISO 639-2/B code: epo
ISO 639-2/T code: epo

Estonian
type: NamedIndividual
type: language
alternative term: eesti keel @et
ISO 639-1 code: et
ISO 639-2/B code: est
ISO 639-2/T code: est

Ewe
type: NamedIndividual
type: language
alternative term: Èʋegbe @ee
ISO 639-1 code: ee
ISO 639-2/B code: ewe
ISO 639-2/T code: ewe

Ewondo
type: NamedIndividual
type: language
ISO 639-2/B code: ewo
ISO 639-2/T code: ewo

Fang
type: NamedIndividual
type: language
ISO 639-2/B code: fan
ISO 639-2/T code: fan

Faroese
type: NamedIndividual
type: language
alternative term: føroyskt @fo
ISO 639-1 code: fo
ISO 639-2/B code: fao
ISO 639-2/T code: fao

Persian
type: NamedIndividual
type: language
alternative term: فارسی @fa
ISO 639-1 code: fa
ISO 639-2/B code: per
ISO 639-2/T code: fas

Fanti
type: NamedIndividual
type: language
alternative term: Fante
alternative term: Fanti
alternative term: Mfantse
ISO 639-2/B code: fat
ISO 639-2/T code: fat

Fijian
type: NamedIndividual
type: language
alternative term: Na Vosa Vakaviti @fj
ISO 639-1 code: fj
ISO 639-2/B code: fij
ISO 639-2/T code: fij

Filipino
type: NamedIndividual
type: language
alternative term: Pilipino
alternative term: Wikang Filipino
ISO 639-2/B code: fil
ISO 639-2/T code: fil

Finnish
type: NamedIndividual
type: language
alternative term: suomen kieli @fi
ISO 639-1 code: fi
ISO 639-2/B code: fin
ISO 639-2/T code: fin

Fon
type: NamedIndividual
type: language
alternative term: Fon gbè
ISO 639-2/B code: fon
ISO 639-2/T code: fon

French
type: NamedIndividual
type: language
alternative term: français @fr
ISO 639-1 code: fr
ISO 639-2/B code: fre
ISO 639-2/T code: fra

French, Middle (ca. 1400–1600)
type: NamedIndividual
type: language
alternative term: franceis
alternative term: françois
ISO 639-2/B code: frm
ISO 639-2/T code: frm

French, Old (842–ca. 1400)
type: NamedIndividual
type: language
alternative term: Franceis
alternative term: François
alternative term: Romanz
ISO 639-2/B code: fro
ISO 639-2/T code: fro

Northern Frisian
type: NamedIndividual
type: language
alternative term: Frasch
alternative term: Freesk
alternative term: Fresk
alternative term: Friisk
ISO 639-2/B code: frr
ISO 639-2/T code: frr

Eastern Frisian
type: NamedIndividual
type: language
alternative term: Seeltersk
ISO 639-2/B code: frs
ISO 639-2/T code: frs

Western Frisian
type: NamedIndividual
type: language
alternative term: Frysk @fy
ISO 639-1 code: fy
ISO 639-2/B code: fry
ISO 639-2/T code: fry

Fulah
type: NamedIndividual
type: language
alternative term: Fulfulde @ff
alternative term: Pulaar @ff
alternative term: Pular @ff
ISO 639-1 code: ff
ISO 639-2/B code: ful
ISO 639-2/T code: ful

Friulian
type: NamedIndividual
type: language
alternative term: Furlan
ISO 639-2/B code: fur
ISO 639-2/T code: fur

Ga
type: NamedIndividual
type: language
alternative term: Gã
ISO 639-2/B code: gaa
ISO 639-2/T code: gaa

Gayo
type: NamedIndividual
type: language
alternative term: Basa Gayo
ISO 639-2/B code: gay
ISO 639-2/T code: gay

Gbaya
type: NamedIndividual
type: language
ISO 639-2/B code: gba
ISO 639-2/T code: gba

Georgian
type: NamedIndividual
type: language
alternative term: ქართული @ka
ISO 639-1 code: ka
ISO 639-2/B code: geo
ISO 639-2/T code: kat

Geez
type: NamedIndividual
type: language
alternative term: ግዕዝ
ISO 639-2/B code: gez
ISO 639-2/T code: gez

Gilbertese
type: NamedIndividual
type: language
alternative term: Taetae ni Kiribati
ISO 639-2/B code: gil
ISO 639-2/T code: gil

Gaelic
type: NamedIndividual
type: language
alternative term: Gàidhlig @gd
alternative term: Scottish Gaelic
ISO 639-1 code: gd
ISO 639-2/B code: gla
ISO 639-2/T code: gla

Irish
type: NamedIndividual
type: language
alternative term: Gaeilge @ga
ISO 639-1 code: ga
ISO 639-2/B code: gle
ISO 639-2/T code: gle

Galician
type: NamedIndividual
type: language
alternative term: galego @gl
ISO 639-1 code: gl
ISO 639-2/B code: glg
ISO 639-2/T code: glg

Manx
type: NamedIndividual
type: language
alternative term: Gaelg @gv
alternative term: Gailck @gv
ISO 639-1 code: gv
ISO 639-2/B code: glv
ISO 639-2/T code: glv

German, Middle High (ca. 1050–1500)
type: NamedIndividual
type: language
alternative term: Diutsch
ISO 639-2/B code: gmh
ISO 639-2/T code: gmh

German, Old High (ca. 750–1050)
type: NamedIndividual
type: language
alternative term: Diutisk
ISO 639-2/B code: goh
ISO 639-2/T code: goh

Gondi
type: NamedIndividual
type: language
ISO 639-2/B code: gon
ISO 639-2/T code: gon

Gorontalo
type: NamedIndividual
type: language
alternative term: Bahasa Hulontalo
ISO 639-2/B code: gor
ISO 639-2/T code: gor

Gothic
type: NamedIndividual
type: language
ISO 639-2/B code: got
ISO 639-2/T code: got

Grebo
type: NamedIndividual
type: language
ISO 639-2/B code: grb
ISO 639-2/T code: grb

Greek, Ancient (to 1453)
type: NamedIndividual
type: language
alternative term: Ἑλληνική
ISO 639-2/B code: grc
ISO 639-2/T code: grc

Guarani
type: NamedIndividual
type: language
alternative term: Avañe'ẽ @gn
ISO 639-1 code: gn
ISO 639-2/B code: grn
ISO 639-2/T code: grn

Swiss German
type: NamedIndividual
type: language
alternative term: Alemannic
alternative term: Alsatian
alternative term: Schwiizerdütsch
ISO 639-2/B code: gsw
ISO 639-2/T code: gsw

Gujarati
type: NamedIndividual
type: language
alternative term: ગુજરાતી @gu
ISO 639-1 code: gu
ISO 639-2/B code: guj
ISO 639-2/T code: guj

Gwich'in
type: NamedIndividual
type: language
alternative term: Dinjii Zhu’ Ginjik
ISO 639-2/B code: gwi
ISO 639-2/T code: gwi

Haida
type: NamedIndividual
type: language
alternative term: Xaad kil
alternative term: X̱aadas Kíl
alternative term: X̱aat Kíl
alternative term: X̱aayda Kil
ISO 639-2/B code: hai
ISO 639-2/T code: hai

Haitian
type: NamedIndividual
type: language
alternative term: Haitian Creole
alternative term: kreyòl ayisyen @ht
ISO 639-1 code: ht
ISO 639-2/B code: hat
ISO 639-2/T code: hat

Hausa
type: NamedIndividual
type: language
alternative term: Harshen Hausa @ha
alternative term: هَرْشَن @ha
ISO 639-1 code: ha
ISO 639-2/B code: hau
ISO 639-2/T code: hau

Hawaiian
type: NamedIndividual
type: language
alternative term: ʻŌlelo Hawaiʻi
ISO 639-2/B code: haw
ISO 639-2/T code: haw

Hebrew
type: NamedIndividual
type: language
alternative term: עברית @he
ISO 639-1 code: he
ISO 639-2/B code: heb
ISO 639-2/T code: heb

Herero
type: NamedIndividual
type: language
alternative term: Otjiherero @hz
ISO 639-1 code: hz
ISO 639-2/B code: her
ISO 639-2/T code: her

Hiligaynon
type: NamedIndividual
type: language
alternative term: Ilonggo
ISO 639-2/B code: hil
ISO 639-2/T code: hil

Hindi
type: NamedIndividual
type: language
alternative term: हिन्दी @hi
ISO 639-1 code: hi
ISO 639-2/B code: hin
ISO 639-2/T code: hin

Hittite
type: NamedIndividual
type: language
alternative term: 𒉈𒅆𒇷
ISO 639-2/B code: hit
ISO 639-2/T code: hit

Hmong
type: NamedIndividual
type: language
alternative term: Mong
alternative term: lol Hmongb
alternative term: lug Moob
alternative term: lus Hmoob
ISO 639-2/B code: hmn
ISO 639-2/T code: hmn

Hiri Motu
type: NamedIndividual
type: language
ISO 639-1 code: ho
ISO 639-2/B code: hmo
ISO 639-2/T code: hmo

Croatian
type: NamedIndividual
type: language
alternative term: hrvatski @hr
ISO 639-1 code: hr
ISO 639-2/B code: hrv
ISO 639-2/T code: hrv

Upper Sorbian
type: NamedIndividual
type: language
alternative term: hornjoserbšćina
ISO 639-2/B code: hsb
ISO 639-2/T code: hsb

Hungarian
type: NamedIndividual
type: language
alternative term: magyar nyelv @hu
ISO 639-1 code: hu
ISO 639-2/B code: hun
ISO 639-2/T code: hun

Hupa
type: NamedIndividual
type: language
alternative term: Na:tinixwe Mixine:whe'
ISO 639-2/B code: hup
ISO 639-2/T code: hup

Iban
type: NamedIndividual
type: language
alternative term: Jaku Iban
ISO 639-2/B code: iba
ISO 639-2/T code: iba

Igbo
type: NamedIndividual
type: language
alternative term: Asụsụ Igbo @ig
ISO 639-1 code: ig
ISO 639-2/B code: ibo
ISO 639-2/T code: ibo

Icelandic
type: NamedIndividual
type: language
alternative term: íslenska @is
ISO 639-1 code: is
ISO 639-2/B code: ice
ISO 639-2/T code: isl

Ido
type: NamedIndividual
type: language
ISO 639-1 code: io
ISO 639-2/B code: ido
ISO 639-2/T code: ido

Sichuan Yi
type: NamedIndividual
type: language
alternative term: Nuosu
alternative term: ꆈꌠꉙ @ii
ISO 639-1 code: ii
ISO 639-2/B code: iii
ISO 639-2/T code: iii

Inuktitut
type: NamedIndividual
type: language
alternative term: ᐃᓄᒃᑎᑐᑦ @iu
ISO 639-1 code: iu
ISO 639-2/B code: iku
ISO 639-2/T code: iku

Interlingue
type: NamedIndividual
type: language
alternative term: Occidental
ISO 639-1 code: ie
ISO 639-2/B code: ile
ISO 639-2/T code: ile

Iloko
type: NamedIndividual
type: language
alternative term: Ilokano
alternative term: Pagsasao nga Ilokano
ISO 639-2/B code: ilo
ISO 639-2/T code: ilo

Interlingua ( International Auxiliary Language Association )
type: NamedIndividual
type: language
ISO 639-1 code: ia
ISO 639-2/B code: ina
ISO 639-2/T code: ina

Indonesian
type: NamedIndividual
type: language
alternative term: bahasa Indonesia @id
ISO 639-1 code: id
ISO 639-2/B code: ind
ISO 639-2/T code: ind

Ingush
type: NamedIndividual
type: language
alternative term: ГӀалгӀай мотт
ISO 639-2/B code: inh
ISO 639-2/T code: inh

Inupiaq
type: NamedIndividual
type: language
alternative term: Iñupiaq @ik
ISO 639-1 code: ik
ISO 639-2/B code: ipk
ISO 639-2/T code: ipk

Italian
type: NamedIndividual
type: language
alternative term: italiano @it
alternative term: lingua italiana @it
ISO 639-1 code: it
ISO 639-2/B code: ita
ISO 639-2/T code: ita

Javanese
type: NamedIndividual
type: language
alternative term: ꦧꦱꦗꦮ @jv
ISO 639-1 code: jv
ISO 639-2/B code: jav
ISO 639-2/T code: jav

Lojban
type: NamedIndividual
type: language
alternative term: la .lojban.
ISO 639-2/B code: jbo
ISO 639-2/T code: jbo

Japanese
type: NamedIndividual
type: language
alternative term: 日本語 @ja
ISO 639-1 code: ja
ISO 639-2/B code: jpn
ISO 639-2/T code: jpn

Judeo-Persian
type: NamedIndividual
type: language
alternative term: Dzhidi
ISO 639-2/B code: jpr
ISO 639-2/T code: jpr

Judeo-Arabic
type: NamedIndividual
type: language
alternative term: ערבית יהודית
alternative term: عربية يهودية
ISO 639-2/B code: jrb
ISO 639-2/T code: jrb

Kara-Kalpak
type: NamedIndividual
type: language
alternative term: Qaraqalpaq tili
alternative term: Қарақалпақ тили
ISO 639-2/B code: kaa
ISO 639-2/T code: kaa

Kabyle
type: NamedIndividual
type: language
alternative term: Tamaziɣt Taqbaylit
alternative term: Tazwawt
ISO 639-2/B code: kab
ISO 639-2/T code: kab

Kachin
type: NamedIndividual
type: language
alternative term: Jingpho
ISO 639-2/B code: kac
ISO 639-2/T code: kac

Kalaallisut
type: NamedIndividual
type: language
alternative term: Greenlandic
ISO 639-1 code: kl
ISO 639-2/B code: kal
ISO 639-2/T code: kal

Kamba
type: NamedIndividual
type: language
ISO 639-2/B code: kam
ISO 639-2/T code: kam

Kannada
type: NamedIndividual
type: language
alternative term: ಕನ್ನಡ @kn
ISO 639-1 code: kn
ISO 639-2/B code: kan
ISO 639-2/T code: kan

Kashmiri
type: NamedIndividual
type: language
alternative term: كأشُر @ks
alternative term: कॉशुर @ks
ISO 639-1 code: ks
ISO 639-2/B code: kas
ISO 639-2/T code: kas

Kanuri
type: NamedIndividual
type: language
ISO 639-1 code: kr
ISO 639-2/B code: kau
ISO 639-2/T code: kau

Kawi
type: NamedIndividual
type: language
alternative term: ꦧꦱꦗꦮ
ISO 639-2/B code: kaw
ISO 639-2/T code: kaw

Kazakh
type: NamedIndividual
type: language
alternative term: qazaq tili @kk
alternative term: қазақ тілі @kk
ISO 639-1 code: kk
ISO 639-2/B code: kaz
ISO 639-2/T code: kaz

Kabardian
type: NamedIndividual
type: language
alternative term: Адыгэбзэ (Къэбэрдейбзэ)
ISO 639-2/B code: kbd
ISO 639-2/T code: kbd

Khasi
type: NamedIndividual
type: language
alternative term: কা কতিয়েন খাশি
ISO 639-2/B code: kha
ISO 639-2/T code: kha

Central Khmer
type: NamedIndividual
type: language
alternative term: ភាសាខ្មែរ @km
ISO 639-1 code: km
ISO 639-2/B code: khm
ISO 639-2/T code: khm

Khotanese
type: NamedIndividual
type: language
alternative term: Sakan
ISO 639-2/B code: kho
ISO 639-2/T code: kho

Kikuyu
type: NamedIndividual
type: language
alternative term: Gikuyu
alternative term: Gĩkũyũ @ki
ISO 639-1 code: ki
ISO 639-2/B code: kik
ISO 639-2/T code: kik

Kinyarwanda
type: NamedIndividual
type: language
ISO 639-1 code: rw
ISO 639-2/B code: kin
ISO 639-2/T code: kin

Kirghiz
type: NamedIndividual
type: language
alternative term: Kyrgyz
alternative term: кыргыз тили @ky
alternative term: кыргызча @ky
ISO 639-1 code: ky
ISO 639-2/B code: kir
ISO 639-2/T code: kir

Kimbundu
type: NamedIndividual
type: language
ISO 639-2/B code: kmb
ISO 639-2/T code: kmb

Konkani
type: NamedIndividual
type: language
alternative term: कोंकणी
ISO 639-2/B code: kok
ISO 639-2/T code: kok

Komi
type: NamedIndividual
type: language
alternative term: Коми кыв @kv
ISO 639-1 code: kv
ISO 639-2/B code: kom
ISO 639-2/T code: kom

Kongo
type: NamedIndividual
type: language
ISO 639-1 code: kg
ISO 639-2/B code: kon
ISO 639-2/T code: kon

Korean
type: NamedIndividual
type: language
alternative term: 한국어 @ko
ISO 639-1 code: ko
ISO 639-2/B code: kor
ISO 639-2/T code: kor

Kosraean
type: NamedIndividual
type: language
ISO 639-2/B code: kos
ISO 639-2/T code: kos

Kpelle
type: NamedIndividual
type: language
alternative term: Kpɛlɛwoo
ISO 639-2/B code: kpe
ISO 639-2/T code: kpe

Karachay-Balkar
type: NamedIndividual
type: language
alternative term: Къарачай-Малкъар тил
alternative term: Таулу тил
ISO 639-2/B code: krc
ISO 639-2/T code: krc

Karelian
type: NamedIndividual
type: language
alternative term: kariela
alternative term: karjal
alternative term: karjala
ISO 639-2/B code: krl
ISO 639-2/T code: krl

Kurukh
type: NamedIndividual
type: language
alternative term: कुड़ुख़
ISO 639-2/B code: kru
ISO 639-2/T code: kru

Kuanyama
type: NamedIndividual
type: language
alternative term: Kwanyama
ISO 639-1 code: kj
ISO 639-2/B code: kua
ISO 639-2/T code: kua

Kumyk
type: NamedIndividual
type: language
alternative term: qumuq til
alternative term: къумукъ тил
ISO 639-2/B code: kum
ISO 639-2/T code: kum

Kurdish
type: NamedIndividual
type: language
alternative term: Kurdî @ku
alternative term: کوردی @ku
ISO 639-1 code: ku
ISO 639-2/B code: kur
ISO 639-2/T code: kur

Kutenai
type: NamedIndividual
type: language
ISO 639-2/B code: kut
ISO 639-2/T code: kut

Ladino
type: NamedIndividual
type: language
alternative term: Judeo-español
ISO 639-2/B code: lad
ISO 639-2/T code: lad

Lahnda
type: NamedIndividual
type: language
alternative term: بھارت کا
ISO 639-2/B code: lah
ISO 639-2/T code: lah

Lamba
type: NamedIndividual
type: language
ISO 639-2/B code: lam
ISO 639-2/T code: lam

Lao
type: NamedIndividual
type: language
alternative term: ພາສາລາວ @lo
ISO 639-1 code: lo
ISO 639-2/B code: lao
ISO 639-2/T code: lao

Latin
type: NamedIndividual
type: language
alternative term: Lingua latīna @la
ISO 639-1 code: la
ISO 639-2/B code: lat
ISO 639-2/T code: lat

Latvian
type: NamedIndividual
type: language
alternative term: Latviešu valoda @lv
ISO 639-1 code: lv
ISO 639-2/B code: lav
ISO 639-2/T code: lav

Lezghian
type: NamedIndividual
type: language
alternative term: Лезги чӏал
ISO 639-2/B code: lez
ISO 639-2/T code: lez

Limburgan
type: NamedIndividual
type: language
alternative term: Limburger
alternative term: Limburgish
alternative term: Lèmburgs @li
ISO 639-1 code: li
ISO 639-2/B code: lim
ISO 639-2/T code: lim

Lingala
type: NamedIndividual
type: language
ISO 639-1 code: ln
ISO 639-2/B code: lin
ISO 639-2/T code: lin

Lithuanian
type: NamedIndividual
type: language
alternative term: lietuvių kalba @lt
ISO 639-1 code: lt
ISO 639-2/B code: lit
ISO 639-2/T code: lit

Mongo
type: NamedIndividual
type: language
alternative term: Lomongo
ISO 639-2/B code: lol
ISO 639-2/T code: lol

Lozi
type: NamedIndividual
type: language
ISO 639-2/B code: loz
ISO 639-2/T code: loz

Luxembourgish
type: NamedIndividual
type: language
alternative term: Letzeburgesch
alternative term: Lëtzebuergesch @lb
ISO 639-1 code: lb
ISO 639-2/B code: ltz
ISO 639-2/T code: ltz

Luba-Lulua
type: NamedIndividual
type: language
alternative term: Tshiluba
ISO 639-2/B code: lua
ISO 639-2/T code: lua

Luba-Katanga
type: NamedIndividual
type: language
alternative term: Kiluba @lu
ISO 639-1 code: lu
ISO 639-2/B code: lub
ISO 639-2/T code: lub

Ganda
type: NamedIndividual
type: language
alternative term: Luganda @lg
ISO 639-1 code: lg
ISO 639-2/B code: lug
ISO 639-2/T code: lug

Luiseno
type: NamedIndividual
type: language
alternative term: Cham'teela
ISO 639-2/B code: lui
ISO 639-2/T code: lui

Lunda
type: NamedIndividual
type: language
alternative term: Chilunda
ISO 639-2/B code: lun
ISO 639-2/T code: lun

Luo (Kenya and Tanzania)
type: NamedIndividual
type: language
alternative term: Dholuo
ISO 639-2/B code: luo
ISO 639-2/T code: luo

Lushai
type: NamedIndividual
type: language
alternative term: Mizo ṭawng
ISO 639-2/B code: lus
ISO 639-2/T code: lus

Macedonian
type: NamedIndividual
type: language
alternative term: македонски јазик @mk
ISO 639-1 code: mk
ISO 639-2/B code: mac
ISO 639-2/T code: mkd

Madurese
type: NamedIndividual
type: language
alternative term: Madhura
ISO 639-2/B code: mad
ISO 639-2/T code: mad

Magahi
type: NamedIndividual
type: language
alternative term: मगही
ISO 639-2/B code: mag
ISO 639-2/T code: mag

Marshallese
type: NamedIndividual
type: language
alternative term: Kajin M̧ajeļ @mh
ISO 639-1 code: mh
ISO 639-2/B code: mah
ISO 639-2/T code: mah

Maithili
type: NamedIndividual
type: language
alternative term: मैथिली
alternative term: মৈথিলী
ISO 639-2/B code: mai
ISO 639-2/T code: mai

Makasar
type: NamedIndividual
type: language
alternative term: Basa Mangkasara'
alternative term: ᨅᨔ ᨆᨀᨔᨑ
ISO 639-2/B code: mak
ISO 639-2/T code: mak

Malayalam
type: NamedIndividual
type: language
alternative term: മലയാളം @ml
ISO 639-1 code: ml
ISO 639-2/B code: mal
ISO 639-2/T code: mal

Mandingo
type: NamedIndividual
type: language
alternative term: Mandi'nka kango
ISO 639-2/B code: man
ISO 639-2/T code: man

Maori
type: NamedIndividual
type: language
alternative term: Te Reo Māori @mi
ISO 639-1 code: mi
ISO 639-2/B code: mao
ISO 639-2/T code: mri

Marathi
type: NamedIndividual
type: language
alternative term: मराठी @mr
ISO 639-1 code: mr
ISO 639-2/B code: mar
ISO 639-2/T code: mar

Masai
type: NamedIndividual
type: language
alternative term: ɔl
ISO 639-2/B code: mas
ISO 639-2/T code: mas

Malay
type: NamedIndividual
type: language
alternative term: Bahasa Melayu @ms
ISO 639-1 code: ms
ISO 639-2/B code: may
ISO 639-2/T code: msa

Moksha
type: NamedIndividual
type: language
alternative term: мокшень кяль
ISO 639-2/B code: mdf
ISO 639-2/T code: mdf

Mandar
type: NamedIndividual
type: language
ISO 639-2/B code: mdr
ISO 639-2/T code: mdr

Mende
type: NamedIndividual
type: language
alternative term: Mɛnde yia
ISO 639-2/B code: men
ISO 639-2/T code: men

Irish, Middle (900–1200)
type: NamedIndividual
type: language
alternative term: Gaoidhealg
ISO 639-2/B code: mga
ISO 639-2/T code: mga

Mi'kmaq
type: NamedIndividual
type: language
alternative term: Micmac
alternative term: Míkmawísimk
ISO 639-2/B code: mic
ISO 639-2/T code: mic

Minangkabau
type: NamedIndividual
type: language
alternative term: Baso Minang
ISO 639-2/B code: min
ISO 639-2/T code: min

Malagasy
type: NamedIndividual
type: language
ISO 639-1 code: mg
ISO 639-2/B code: mlg
ISO 639-2/T code: mlg

Maltese
type: NamedIndividual
type: language
alternative term: Malti @mt
ISO 639-1 code: mt
ISO 639-2/B code: mlt
ISO 639-2/T code: mlt

Manchu
type: NamedIndividual
type: language
alternative term: ᠮᠠᠨᠵᡠ ᡤᡳᠰᡠᠨ
ISO 639-2/B code: mnc
ISO 639-2/T code: mnc

Manipuri
type: NamedIndividual
type: language
ISO 639-2/B code: mni
ISO 639-2/T code: mni

Mohawk
type: NamedIndividual
type: language
alternative term: Kanien’kéha
ISO 639-2/B code: moh
ISO 639-2/T code: moh

Mongolian
type: NamedIndividual
type: language
alternative term: монгол хэл @mn
alternative term: ᠮᠣᠩᠭᠣᠯ ᠬᠡᠯᠡ @mn
ISO 639-1 code: mn
ISO 639-2/B code: mon
ISO 639-2/T code: mon

Mossi
type: NamedIndividual
type: language
alternative term: Mooré
ISO 639-2/B code: mos
ISO 639-2/T code: mos

Creek
type: NamedIndividual
type: language
alternative term: Mvskoke
ISO 639-2/B code: mus
ISO 639-2/T code: mus

Mirandese
type: NamedIndividual
type: language
alternative term: lhéngua mirandesa
alternative term: mirandés
ISO 639-2/B code: mwl
ISO 639-2/T code: mwl

Marwari
type: NamedIndividual
type: language
alternative term: मारवाड़ी
ISO 639-2/B code: mwr
ISO 639-2/T code: mwr

Erzya
type: NamedIndividual
type: language
alternative term: эрзянь кель
ISO 639-2/B code: myv
ISO 639-2/T code: myv

Neapolitan
type: NamedIndividual
type: language
alternative term: napulitano
ISO 639-2/B code: nap
ISO 639-2/T code: nap

Nauru
type: NamedIndividual
type: language
alternative term: dorerin Naoero @na
ISO 639-1 code: na
ISO 639-2/B code: nau
ISO 639-2/T code: nau

Navajo
type: NamedIndividual
type: language
alternative term: Diné bizaad @nv
alternative term: Naabeehó bizaad @nv
alternative term: Navaho
ISO 639-1 code: nv
ISO 639-2/B code: nav
ISO 639-2/T code: nav

Ndebele, South
type: NamedIndividual
type: language
alternative term: South Ndebele
alternative term: isiNdebele seSewula @nr
ISO 639-1 code: nr
ISO 639-2/B code: nbl
ISO 639-2/T code: nbl

Ndebele, North
type: NamedIndividual
type: language
alternative term: North Ndebele
alternative term: siNdebele saseNyakatho @nd
ISO 639-1 code: nd
ISO 639-2/B code: nde
ISO 639-2/T code: nde

Ndonga
type: NamedIndividual
type: language
alternative term: ndonga @ng
ISO 639-1 code: ng
ISO 639-2/B code: ndo
ISO 639-2/T code: ndo

Low German
type: NamedIndividual
type: language
alternative term: German, Low
alternative term: Low Saxon
alternative term: Plattdütsch
alternative term: Plattdüütsch
alternative term: Saxon, Low
ISO 639-2/B code: nds
ISO 639-2/T code: nds

Nepali
type: NamedIndividual
type: language
alternative term: नेपाली भाषा @ne
ISO 639-1 code: ne
ISO 639-2/B code: nep
ISO 639-2/T code: nep

Nepal Bhasa
type: NamedIndividual
type: language
alternative term: Newari
alternative term: नेपाल भाषा
alternative term: नेवाः भाय्
ISO 639-2/B code: new
ISO 639-2/T code: new

Nias
type: NamedIndividual
type: language
alternative term: Li Niha
ISO 639-2/B code: nia
ISO 639-2/T code: nia

Niuean
type: NamedIndividual
type: language
alternative term: ko e vagahau Niuē
ISO 639-2/B code: niu
ISO 639-2/T code: niu

Norwegian Nynorsk
type: NamedIndividual
type: language
alternative term: Nynorsk, Norwegian
alternative term: nynorsk @nn
ISO 639-1 code: nn
ISO 639-2/B code: nno
ISO 639-2/T code: nno

Bokmål , Norwegian
type: NamedIndividual
type: language
alternative term: Norwegian Bokmål
alternative term: bokmål @nb
ISO 639-1 code: nb
ISO 639-2/B code: nob
ISO 639-2/T code: nob

Nogai
type: NamedIndividual
type: language
alternative term: Ногай тили
ISO 639-2/B code: nog
ISO 639-2/T code: nog

Norse, Old
type: NamedIndividual
type: language
alternative term: Dǫnsk tunga
alternative term: Norrœnt mál
ISO 639-2/B code: non
ISO 639-2/T code: non

Norwegian
type: NamedIndividual
type: language
alternative term: norsk @no
ISO 639-1 code: no
ISO 639-2/B code: nor
ISO 639-2/T code: nor

N'Ko
type: NamedIndividual
type: language
ISO 639-2/B code: nqo
ISO 639-2/T code: nqo

Pedi
type: NamedIndividual
type: language
alternative term: Northern Sotho
alternative term: Sepedi
alternative term: Sesotho sa Leboa
ISO 639-2/B code: nso
ISO 639-2/T code: nso

Classical Newari
type: NamedIndividual
type: language
alternative term: Classical Nepal Bhasa
alternative term: Old Newari
alternative term: पुलां भाय्
alternative term: पुलाङु नेपाल भाय्
ISO 639-2/B code: nwc
ISO 639-2/T code: nwc

Chichewa
type: NamedIndividual
type: language
alternative term: Chewa
alternative term: Chichewa @ny
alternative term: Chinyanja @ny
alternative term: Nyanja
ISO 639-1 code: ny
ISO 639-2/B code: nya
ISO 639-2/T code: nya

Nyamwezi
type: NamedIndividual
type: language
ISO 639-2/B code: nym
ISO 639-2/T code: nym

Nyankole
type: NamedIndividual
type: language
ISO 639-2/B code: nyn
ISO 639-2/T code: nyn

Nyoro
type: NamedIndividual
type: language
alternative term: Runyoro
ISO 639-2/B code: nyo
ISO 639-2/T code: nyo

Nzima
type: NamedIndividual
type: language
ISO 639-2/B code: nzi
ISO 639-2/T code: nzi

Occitan (post 1500)
type: NamedIndividual
type: language
alternative term: Provençal
alternative term: lenga d'òc @oc
alternative term: occitan @oc
alternative term: provençal @oc
ISO 639-1 code: oc
ISO 639-2/B code: oci
ISO 639-2/T code: oci

Ojibwa
type: NamedIndividual
type: language
ISO 639-1 code: oj
ISO 639-2/B code: oji
ISO 639-2/T code: oji

Oriya
type: NamedIndividual
type: language
alternative term: ଓଡ଼ିଆ @or
ISO 639-1 code: or
ISO 639-2/B code: ori
ISO 639-2/T code: ori

Oromo
type: NamedIndividual
type: language
alternative term: Afaan Oromoo @om
ISO 639-1 code: om
ISO 639-2/B code: orm
ISO 639-2/T code: orm

Osage
type: NamedIndividual
type: language
alternative term: Wazhazhe ie
alternative term: 𐓏𐓘𐓻𐓘𐓻𐓟 𐒻𐓟
ISO 639-2/B code: osa
ISO 639-2/T code: osa

Ossetian
type: NamedIndividual
type: language
alternative term: Ossetic
alternative term: Ирон æвзаг @os
ISO 639-1 code: os
ISO 639-2/B code: oss
ISO 639-2/T code: oss

Turkish, Ottoman (1500–1928)
type: NamedIndividual
type: language
alternative term: lisân-ı Osmânî
alternative term: لسان عثمانى
ISO 639-2/B code: ota
ISO 639-2/T code: ota

Pangasinan
type: NamedIndividual
type: language
alternative term: Salitan Pangasinan
ISO 639-2/B code: pag
ISO 639-2/T code: pag

Pahlavi
type: NamedIndividual
type: language
alternative term: Pārsīg
alternative term: Pārsīk
ISO 639-2/B code: pal
ISO 639-2/T code: pal

Pampanga
type: NamedIndividual
type: language
alternative term: Amánung Kapampangan
alternative term: Amánung Sísuan
alternative term: Kapampangan
ISO 639-2/B code: pam
ISO 639-2/T code: pam

Panjabi
type: NamedIndividual
type: language
alternative term: Punjabi
alternative term: پنجابی @pa
alternative term: ਪੰਜਾਬੀ @pa
ISO 639-1 code: pa
ISO 639-2/B code: pan
ISO 639-2/T code: pan

Papiamento
type: NamedIndividual
type: language
alternative term: Papiamentu
ISO 639-2/B code: pap
ISO 639-2/T code: pap

Palauan
type: NamedIndividual
type: language
alternative term: a tekoi er a Belau
ISO 639-2/B code: pau
ISO 639-2/T code: pau

Persian, Old (ca. 600–400 B.C.)
type: NamedIndividual
type: language
ISO 639-2/B code: peo
ISO 639-2/T code: peo

Phoenician
type: NamedIndividual
type: language
alternative term: 𐤃𐤁𐤓𐤉𐤌 𐤊𐤍𐤏𐤍𐤉𐤌
ISO 639-2/B code: phn
ISO 639-2/T code: phn

Pali
type: NamedIndividual
type: language
alternative term: Pāli @pi
ISO 639-1 code: pi
ISO 639-2/B code: pli
ISO 639-2/T code: pli

Polish
type: NamedIndividual
type: language
alternative term: Język polski @pl
ISO 639-1 code: pl
ISO 639-2/B code: pol
ISO 639-2/T code: pol

Pohnpeian
type: NamedIndividual
type: language
ISO 639-2/B code: pon
ISO 639-2/T code: pon

Portuguese
type: NamedIndividual
type: language
alternative term: português @pt
ISO 639-1 code: pt
ISO 639-2/B code: por
ISO 639-2/T code: por

Provençal, Old (to 1500)
type: NamedIndividual
type: language
alternative term: Old Occitan (to 1500)
ISO 639-2/B code: pro
ISO 639-2/T code: pro

Pushto
type: NamedIndividual
type: language
alternative term: Pashto
alternative term: پښتو @ps
ISO 639-1 code: ps
ISO 639-2/B code: pus
ISO 639-2/T code: pus

Quechua
type: NamedIndividual
type: language
alternative term: Nuna shimi @qu
alternative term: Runa simi @qu
alternative term: kichwa simi @qu
ISO 639-1 code: qu
ISO 639-2/B code: que
ISO 639-2/T code: que

Rajasthani
type: NamedIndividual
type: language
alternative term: राजस्थानी
ISO 639-2/B code: raj
ISO 639-2/T code: raj

Rapanui
type: NamedIndividual
type: language
alternative term: Vananga rapa nui
ISO 639-2/B code: rap
ISO 639-2/T code: rap

Rarotongan
type: NamedIndividual
type: language
alternative term: Cook Islands Maori
alternative term: Māori Kūki 'Āirani
ISO 639-2/B code: rar
ISO 639-2/T code: rar

Romansh
type: NamedIndividual
type: language
alternative term: Romauntsch @rm
alternative term: Romontsch @rm
alternative term: Rumantsch @rm
alternative term: Rumàntsch @rm
ISO 639-1 code: rm
ISO 639-2/B code: roh
ISO 639-2/T code: roh

Romany
type: NamedIndividual
type: language
alternative term: romani čhib
ISO 639-2/B code: rom
ISO 639-2/T code: rom

Romanian
type: NamedIndividual
type: language
alternative term: Moldavian
alternative term: Moldovan
alternative term: limba română @ro
ISO 639-1 code: ro
ISO 639-2/B code: rum
ISO 639-2/T code: ron

Rundi
type: NamedIndividual
type: language
alternative term: Ikirundi @rn
ISO 639-1 code: rn
ISO 639-2/B code: run
ISO 639-2/T code: run

Aromanian
type: NamedIndividual
type: language
alternative term: Arumanian
alternative term: Macedo-Romanian
alternative term: armãneashce
alternative term: armãneashti
alternative term: rrãmãneshti
ISO 639-2/B code: rup
ISO 639-2/T code: rup

Russian
type: NamedIndividual
type: language
alternative term: русский язык @ru
ISO 639-1 code: ru
ISO 639-2/B code: rus
ISO 639-2/T code: rus

Sandawe
type: NamedIndividual
type: language
alternative term: Sandaweeki
ISO 639-2/B code: sad
ISO 639-2/T code: sad

Sango
type: NamedIndividual
type: language
alternative term: yângâ tî sängö @sg
ISO 639-1 code: sg
ISO 639-2/B code: sag
ISO 639-2/T code: sag

Yakut
type: NamedIndividual
type: language
alternative term: Сахалыы
ISO 639-2/B code: sah
ISO 639-2/T code: sah

Samaritan Aramaic
type: NamedIndividual
type: language
alternative term: ארמית
ISO 639-2/B code: sam
ISO 639-2/T code: sam

Sanskrit
type: NamedIndividual
type: language
alternative term: संस्कृतम् @sa
ISO 639-1 code: sa
ISO 639-2/B code: san
ISO 639-2/T code: san

Sasak
type: NamedIndividual
type: language
ISO 639-2/B code: sas
ISO 639-2/T code: sas

Santali
type: NamedIndividual
type: language
alternative term: ᱥᱟᱱᱛᱟᱲᱤ
ISO 639-2/B code: sat
ISO 639-2/T code: sat

Sicilian
type: NamedIndividual
type: language
alternative term: Sicilianu
ISO 639-2/B code: scn
ISO 639-2/T code: scn

Scots
type: NamedIndividual
type: language
alternative term: Braid Scots
alternative term: Lallans
ISO 639-2/B code: sco
ISO 639-2/T code: sco

Selkup
type: NamedIndividual
type: language
ISO 639-2/B code: sel
ISO 639-2/T code: sel

Irish, Old (to 900)
type: NamedIndividual
type: language
alternative term: Goídelc
ISO 639-2/B code: sga
ISO 639-2/T code: sga

Shan
type: NamedIndividual
type: language
alternative term: ၵႂၢမ်းတႆးယႂ်
ISO 639-2/B code: shn
ISO 639-2/T code: shn

Sidamo
type: NamedIndividual
type: language
alternative term: Sidaamu Afoo
ISO 639-2/B code: sid
ISO 639-2/T code: sid

Sinhala
type: NamedIndividual
type: language
alternative term: Sinhalese
alternative term: සිංහල @si
ISO 639-1 code: si
ISO 639-2/B code: sin
ISO 639-2/T code: sin

Slovak
type: NamedIndividual
type: language
alternative term: slovenský jazyk @sk
alternative term: slovenčina @sk
ISO 639-1 code: sk
ISO 639-2/B code: slo
ISO 639-2/T code: slk

Slovenian
type: NamedIndividual
type: language
alternative term: slovenski jezik @sl
alternative term: slovenščina @sl
ISO 639-1 code: sl
ISO 639-2/B code: slv
ISO 639-2/T code: slv

Southern Sami
type: NamedIndividual
type: language
alternative term: Åarjelsaemien gïele
ISO 639-2/B code: sma
ISO 639-2/T code: sma

Northern Sami
type: NamedIndividual
type: language
alternative term: davvisámegiella @se
ISO 639-1 code: se
ISO 639-2/B code: sme
ISO 639-2/T code: sme

Lule Sami
type: NamedIndividual
type: language
alternative term: julevsámegiella
ISO 639-2/B code: smj
ISO 639-2/T code: smj

Inari Sami
type: NamedIndividual
type: language
alternative term: anarâškielâ
ISO 639-2/B code: smn
ISO 639-2/T code: smn

Samoan
type: NamedIndividual
type: language
alternative term: Gagana faʻa Sāmoa @sm
ISO 639-1 code: sm
ISO 639-2/B code: smo
ISO 639-2/T code: smo

Skolt Sami
type: NamedIndividual
type: language
alternative term: sääʹmǩiõll
ISO 639-2/B code: sms
ISO 639-2/T code: sms

Shona
type: NamedIndividual
type: language
alternative term: chiShona @sn
ISO 639-1 code: sn
ISO 639-2/B code: sna
ISO 639-2/T code: sna

Sindhi
type: NamedIndividual
type: language
alternative term: سنڌي @sd
alternative term: सिन्धी @sd
alternative term: ਸਿੰਧੀ @sd
ISO 639-1 code: sd
ISO 639-2/B code: snd
ISO 639-2/T code: snd

Soninke
type: NamedIndividual
type: language
alternative term: Sooninkanxanne
ISO 639-2/B code: snk
ISO 639-2/T code: snk

Sogdian
type: NamedIndividual
type: language
ISO 639-2/B code: sog
ISO 639-2/T code: sog

Somali
type: NamedIndividual
type: language
alternative term: af Soomaali @so
ISO 639-1 code: so
ISO 639-2/B code: som
ISO 639-2/T code: som

Sotho, Southern
type: NamedIndividual
type: language
alternative term: Sesotho [southern] @st
ISO 639-1 code: st
ISO 639-2/B code: sot
ISO 639-2/T code: sot

Spanish
type: NamedIndividual
type: language
alternative term: Castilian
alternative term: castellano @es
alternative term: español @es
ISO 639-1 code: es
ISO 639-2/B code: spa
ISO 639-2/T code: spa

Sardinian
type: NamedIndividual
type: language
alternative term: limba sarda @sc
alternative term: lingua sarda @sc
alternative term: sardu @sc
ISO 639-1 code: sc
ISO 639-2/B code: srd
ISO 639-2/T code: srd

Sranan Tongo
type: NamedIndividual
type: language
ISO 639-2/B code: srn
ISO 639-2/T code: srn

Serbian
type: NamedIndividual
type: language
alternative term: srpski @sr
alternative term: српски @sr
ISO 639-1 code: sr
ISO 639-2/B code: srp
ISO 639-2/T code: srp

Serer
type: NamedIndividual
type: language
alternative term: Seereer
ISO 639-2/B code: srr
ISO 639-2/T code: srr

Swati
type: NamedIndividual
type: language
alternative term: siSwati @ss
ISO 639-1 code: ss
ISO 639-2/B code: ssw
ISO 639-2/T code: ssw

Sukuma
type: NamedIndividual
type: language
alternative term: Kɪsukuma
ISO 639-2/B code: suk
ISO 639-2/T code: suk

Sundanese
type: NamedIndividual
type: language
alternative term: Basa Sunda @su
alternative term: ᮘᮞ ᮞᮥᮔ᮪ᮓ @su
ISO 639-1 code: su
ISO 639-2/B code: sun
ISO 639-2/T code: sun

Susu
type: NamedIndividual
type: language
alternative term: Sosoxui
ISO 639-2/B code: sus
ISO 639-2/T code: sus

Sumerian
type: NamedIndividual
type: language
alternative term: 𒅴𒂠
ISO 639-2/B code: sux
ISO 639-2/T code: sux

Swahili
type: NamedIndividual
type: language
alternative term: Kiswahili @sw
ISO 639-1 code: sw
ISO 639-2/B code: swa
ISO 639-2/T code: swa

Swedish
type: NamedIndividual
type: language
alternative term: svenska @sv
ISO 639-1 code: sv
ISO 639-2/B code: swe
ISO 639-2/T code: swe

Classical Syriac
type: NamedIndividual
type: language
ISO 639-2/B code: syc
ISO 639-2/T code: syc

Syriac
type: NamedIndividual
type: language
alternative term: ܠܫܢܐ ܣܘܪܝܝܐ
ISO 639-2/B code: syr
ISO 639-2/T code: syr

Tahitian
type: NamedIndividual
type: language
alternative term: Reo Mā'ohi @ty
alternative term: Reo Tahiti @ty
ISO 639-1 code: ty
ISO 639-2/B code: tah
ISO 639-2/T code: tah

Tamil
type: NamedIndividual
type: language
alternative term: தமிழ் @ta
ISO 639-1 code: ta
ISO 639-2/B code: tam
ISO 639-2/T code: tam

Tatar
type: NamedIndividual
type: language
alternative term: tatar tele @tt
alternative term: татар теле @tt
alternative term: تاتار @tt
ISO 639-1 code: tt
ISO 639-2/B code: tat
ISO 639-2/T code: tat

Telugu
type: NamedIndividual
type: language
alternative term: తెలుగు @te
ISO 639-1 code: te
ISO 639-2/B code: tel
ISO 639-2/T code: tel

Timne
type: NamedIndividual
type: language
alternative term: KʌThemnɛ
ISO 639-2/B code: tem
ISO 639-2/T code: tem

Tereno
type: NamedIndividual
type: language
alternative term: Terêna
ISO 639-2/B code: ter
ISO 639-2/T code: ter

Tetum
type: NamedIndividual
type: language
alternative term: Lia-Tetun
ISO 639-2/B code: tet
ISO 639-2/T code: tet

Tajik
type: NamedIndividual
type: language
alternative term: tojikī @tg
alternative term: тоҷикӣ @tg
ISO 639-1 code: tg
ISO 639-2/B code: tgk
ISO 639-2/T code: tgk

Tagalog
type: NamedIndividual
type: language
alternative term: Wikang Tagalog @tl
ISO 639-1 code: tl
ISO 639-2/B code: tgl
ISO 639-2/T code: tgl

Thai
type: NamedIndividual
type: language
alternative term: ภาษาไทย @th
ISO 639-1 code: th
ISO 639-2/B code: tha
ISO 639-2/T code: tha

Tigre
type: NamedIndividual
type: language
alternative term: ትግረ
alternative term: ትግራይት
alternative term: ትግሬ
alternative term: ኻሳ
ISO 639-2/B code: tig
ISO 639-2/T code: tig

Tigrinya
type: NamedIndividual
type: language
alternative term: ትግርኛ @ti
ISO 639-1 code: ti
ISO 639-2/B code: tir
ISO 639-2/T code: tir

Tiv
type: NamedIndividual
type: language
ISO 639-2/B code: tiv
ISO 639-2/T code: tiv

Tokelau
type: NamedIndividual
type: language
ISO 639-2/B code: tkl
ISO 639-2/T code: tkl

Klingon
type: NamedIndividual
type: language
alternative term: tlhIngan-Hol
ISO 639-2/B code: tlh
ISO 639-2/T code: tlh

Tlingit
type: NamedIndividual
type: language
alternative term: Lingít
ISO 639-2/B code: tli
ISO 639-2/T code: tli

Tamashek
type: NamedIndividual
type: language
ISO 639-2/B code: tmh
ISO 639-2/T code: tmh

Tonga (Nyasa)
type: NamedIndividual
type: language
alternative term: chiTonga
ISO 639-2/B code: tog
ISO 639-2/T code: tog

Tonga (Tonga Islands)
type: NamedIndividual
type: language
alternative term: lea faka-Tonga @to
ISO 639-1 code: to
ISO 639-2/B code: ton
ISO 639-2/T code: ton

Tok Pisin
type: NamedIndividual
type: language
ISO 639-2/B code: tpi
ISO 639-2/T code: tpi

Tsimshian
type: NamedIndividual
type: language
ISO 639-2/B code: tsi
ISO 639-2/T code: tsi

Tswana
type: NamedIndividual
type: language
alternative term: Setswana @tn
ISO 639-1 code: tn
ISO 639-2/B code: tsn
ISO 639-2/T code: tsn

Tsonga
type: NamedIndividual
type: language
alternative term: Xitsonga @ts
ISO 639-1 code: ts
ISO 639-2/B code: tso
ISO 639-2/T code: tso

Turkmen
type: NamedIndividual
type: language
alternative term: Türkmençe @tk
alternative term: türkmen dili @tk
alternative term: Түркменче @tk
alternative term: түркмен дили @tk
alternative term: تورکمن تیلی @tk
alternative term: تورکمنچه @tk
ISO 639-1 code: tk
ISO 639-2/B code: tuk
ISO 639-2/T code: tuk

Tumbuka
type: NamedIndividual
type: language
alternative term: chiTumbuka
ISO 639-2/B code: tum
ISO 639-2/T code: tum

Turkish
type: NamedIndividual
type: language
alternative term: Türkçe @tr
ISO 639-1 code: tr
ISO 639-2/B code: tur
ISO 639-2/T code: tur

Tuvalu
type: NamedIndividual
type: language
alternative term: Te Gagana Tuuvalu
alternative term: Te Ggana Tuuvalu
ISO 639-2/B code: tvl
ISO 639-2/T code: tvl

Twi
type: NamedIndividual
type: language
ISO 639-1 code: tw
ISO 639-2/B code: twi
ISO 639-2/T code: twi

Tuvinian
type: NamedIndividual
type: language
alternative term: тыва дыл
ISO 639-2/B code: tyv
ISO 639-2/T code: tyv

Udmurt
type: NamedIndividual
type: language
alternative term: удмурт кыл
ISO 639-2/B code: udm
ISO 639-2/T code: udm

Ugaritic
type: NamedIndividual
type: language
ISO 639-2/B code: uga
ISO 639-2/T code: uga

Uighur
type: NamedIndividual
type: language
alternative term: Uyghur
alternative term: ئۇيغۇر تىلى @ug
alternative term: ئۇيغۇرچە @ug
ISO 639-1 code: ug
ISO 639-2/B code: uig
ISO 639-2/T code: uig

Ukrainian
type: NamedIndividual
type: language
alternative term: українська мова @uk
ISO 639-1 code: uk
ISO 639-2/B code: ukr
ISO 639-2/T code: ukr

Umbundu
type: NamedIndividual
type: language
alternative term: Úmbúndú
ISO 639-2/B code: umb
ISO 639-2/T code: umb

Urdu
type: NamedIndividual
type: language
alternative term: اُردُو @ur
ISO 639-1 code: ur
ISO 639-2/B code: urd
ISO 639-2/T code: urd

Uzbek
type: NamedIndividual
type: language
alternative term: Oʻzbekcha @uz
alternative term: oʻzbek tili @uz
alternative term: ўзбек тили @uz
alternative term: ўзбекча @uz
alternative term: ئوبېک تیلی @uz
alternative term: ئوزبېچه @uz
ISO 639-1 code: uz
ISO 639-2/B code: uzb
ISO 639-2/T code: uzb

Vai
type: NamedIndividual
type: language
alternative term: ꕙꔤ
ISO 639-2/B code: vai
ISO 639-2/T code: vai

Venda
type: NamedIndividual
type: language
alternative term: Tshivenḓa @ve
ISO 639-1 code: ve
ISO 639-2/B code: ven
ISO 639-2/T code: ven

Vietnamese
type: NamedIndividual
type: language
alternative term: Tiếng Việt @vi
ISO 639-1 code: vi
ISO 639-2/B code: vie
ISO 639-2/T code: vie

Volapük
type: NamedIndividual
type: language
ISO 639-1 code: vo
ISO 639-2/B code: vol
ISO 639-2/T code: vol

Votic
type: NamedIndividual
type: language
alternative term: vađđa ceeli
ISO 639-2/B code: vot
ISO 639-2/T code: vot

Wolaitta
type: NamedIndividual
type: language
alternative term: Walamo
alternative term: Wolaytta
ISO 639-2/B code: wal
ISO 639-2/T code: wal

Waray
type: NamedIndividual
type: language
alternative term: Binisayâ nga Samar-Leyte
alternative term: Binisayâ nga Winaray
alternative term: Lineyte-Samarnon
alternative term: Samareño
alternative term: Winaray
alternative term: “Binisayâ nga Waray”
ISO 639-2/B code: war
ISO 639-2/T code: war

Washo
type: NamedIndividual
type: language
alternative term: wá:šiw ʔítlu
ISO 639-2/B code: was
ISO 639-2/T code: was

Walloon
type: NamedIndividual
type: language
alternative term: Walon @wa
ISO 639-1 code: wa
ISO 639-2/B code: wln
ISO 639-2/T code: wln

Wolof
type: NamedIndividual
type: language
ISO 639-1 code: wo
ISO 639-2/B code: wol
ISO 639-2/T code: wol

Kalmyk
type: NamedIndividual
type: language
alternative term: Oirat
alternative term: Xaľmg keln
alternative term: Хальмг келн
ISO 639-2/B code: xal
ISO 639-2/T code: xal

Xhosa
type: NamedIndividual
type: language
alternative term: isiXhosa @xh
ISO 639-1 code: xh
ISO 639-2/B code: xho
ISO 639-2/T code: xho

Yao
type: NamedIndividual
type: language
ISO 639-2/B code: yao
ISO 639-2/T code: yao

Yapese
type: NamedIndividual
type: language
ISO 639-2/B code: yap
ISO 639-2/T code: yap

Yiddish
type: NamedIndividual
type: language
alternative term: אידיש @yi
alternative term: ייִדיש @yi
alternative term: יידיש @yi
ISO 639-1 code: yi
ISO 639-2/B code: yid
ISO 639-2/T code: yid

Yoruba
type: NamedIndividual
type: language
alternative term: èdè Yorùbá @yo
ISO 639-1 code: yo
ISO 639-2/B code: yor
ISO 639-2/T code: yor

Zapotec
type: NamedIndividual
type: language
alternative term: Diidxazá
ISO 639-2/B code: zap
ISO 639-2/T code: zap

Blissymbols
type: NamedIndividual
type: language
alternative term: Bliss
alternative term: Blissymbolics
ISO 639-2/B code: zbl
ISO 639-2/T code: zbl

Zenaga
type: NamedIndividual
type: language
alternative term: Tuḍḍungiyya
ISO 639-2/B code: zen
ISO 639-2/T code: zen

Standard Moroccan Tamazight
type: NamedIndividual
type: language
alternative term: ⵜⴰⵎⴰⵣⵉⵖⵜ ⵜⴰⵏⴰⵡⴰⵢⵜ
ISO 639-2/B code: zgh
ISO 639-2/T code: zgh

Zhuang
type: NamedIndividual
type: language
alternative term: Chuang
alternative term: Vahcuengh @za
alternative term: 話僮 @za
ISO 639-1 code: za
ISO 639-2/B code: zha
ISO 639-2/T code: zha

Zulu
type: NamedIndividual
type: language
alternative term: isiZulu @zu
ISO 639-1 code: zu
ISO 639-2/B code: zul
ISO 639-2/T code: zul

Zuni
type: NamedIndividual
type: language
alternative term: Shiwi'ma
ISO 639-2/B code: zun
ISO 639-2/T code: zun

Zaza
type: NamedIndividual
type: language
alternative term: Dimili
alternative term: Dimli
alternative term: Kirdki
alternative term: Kirmanjki
alternative term: Zazaki
ISO 639-2/B code: zza
ISO 639-2/T code: zza

axiom holds for all times
type: NamedIndividual
editor preferred term: axiom holds for all times

Minatoba government Public Health division
type: NamedIndividual
type: organization

Rite Aid
type: NamedIndividual
type: company

Costco
type: NamedIndividual
type: company

Walgreens
type: NamedIndividual
type: company

Have you had a disorder in the last month that caused brain or nerve damage such as stroke or convulsion?
type: NamedIndividual
type: Class
  union of: question on stroke leading brain or nerve damage
  union of: question on convulsion leading brain or nerve damage

Intercell Biomedical
type: NamedIndividual
type: company

Acambis, Inc
type: NamedIndividual
type: company
definition editor: YH
has URI: http://www.acambis.com/

Berna Biotech, Ltd
type: NamedIndividual
type: company
definition editor: YH
has URI: http://www.crucell.com/

BioPort Corp
type: NamedIndividual
type: company
definition editor: YH
has URI: http://www.bioport.com/

CSL Limited
type: NamedIndividual
type: company
definition editor: YH
has URI: http://www.csl.com.au/

GlaxoSmithKline Biologicals
type: NamedIndividual
type: company
definition editor: YH
has URI: http://www.gsk-bio.com/english/index.html

Greer Laboratories Inc
type: NamedIndividual
type: company
definition editor: YH
has URI: http://www.greerlabs.com/

ID Biomedical Corp of Quebec
type: NamedIndividual
type: company
definition editor: YH
has URI: http://www.ctidirectory.com/search/company.cfm

Massachusetts Public Health Biologic Lab
type: NamedIndividual
type: company
definition editor: YH

MedImmune Vaccines, Inc
type: NamedIndividual
type: company
definition editor: YH
has URI: http://www.medimmune.com/

Merck & Co, Inc
type: NamedIndividual
type: company
type: pharmaceutical company
definition editor: YH
alternative term: Merck Sharp & Dohme Corp.
has URI: http://www.merck.com/

Novartis Vaccines and Diagnostics
type: NamedIndividual
type: company
definition editor: YH
has URI: http://www.novartis.com/about-novartis/our-businesses/vaccines-diagnostic.shtml

Organon Teknika Corp LLC
type: NamedIndividual
type: company
definition editor: YH

Research Foundation for Microbial Diseases of Osaka University
type: NamedIndividual
type: company
definition editor: YH
has URI: http://read.jst.go.jp/public/cs_kkn_004EventAction.do

Sanofi Pasteur Limited
type: NamedIndividual
type: company
definition editor: YH
has URI: http://www.sanofipasteur.com

Sanofi Pasteur, Inc
type: NamedIndividual
type: company
definition editor: YH
has_exact_synonym: Aventis Pasteur Inc.
has URI: http://www.sanofipasteur.us

Wyeth Pharmaceuticals Inc
type: NamedIndividual
type: company
definition editor: YH
has URI: http://www.wyeth.com/

Sanofi Pasteur, SA
type: NamedIndividual
type: company
definition editor: YH
has URI: http://www.sanofipasteur.co.za/

Solvay Pharmaceuticals
type: NamedIndividual
type: company
definition editor: YH

Baxter Healthcare Corporation
type: NamedIndividual
type: company
definition editor: YH, ZX
has URI: http://www.baxter.com/

Merck Frosst
type: NamedIndividual
type: company
definition editor: YH, ZX
has URI: http://www.merckfrosst.ca/

SBL Vaccine
type: NamedIndividual
type: company
definition editor: YH, ZX

Wyeth Canada
type: NamedIndividual
type: company
definition editor: YH, ZX
has URI: http://www.wyeth.ca/

Novartis
type: NamedIndividual
type: company
definition editor: YH
alternative term: Aqua Health
has URI: http://www.novartis.com/

ID Biomedical Corporation of Quebec
type: NamedIndividual
type: company
creator: YL

Vaccine Adverse Event Reporting System (VAERS)
type: NamedIndividual
type: governmental organization

National Vaccine Injury Compensation Program (VICP)
type: NamedIndividual
type: plan specification

ImmTrac2
type: NamedIndividual
type: immunization registry

S. Clint Dowland
description: Researcher ORCID=0000-0003-1909-9269

Axiom
annotated source: S. Clint Dowland
annotated property: description
annotated target: Researcher ORCID=0000-0003-1909-9269
source: Q123250399

Axiom
annotated source: S. Clint Dowland
annotated property: label
annotated target: S. Clint Dowland
source: Q123250399

infer input from direct reg
is rule enabled: true
comment: MF(X)-directly_regulates->MF(Y)-enabled_by->GP(Z) => MF(Y)-has_input->GP(Y) e.g. if 'protein kinase activity'(X) directly_regulates 'protein binding activity (Y)and this is enabled by GP(Z) then X has_input Z
type: Imp
body: IndividualPropertyAtom
  property predicate: enables
  argument1: http://purl.obolibrary.org/obo/ro.owl#z
  argument2: http://purl.obolibrary.org/obo/ro.owl#y
body: IndividualPropertyAtom
  property predicate: directly regulates
  argument1: http://purl.obolibrary.org/obo/ro.owl#x
  argument2: http://purl.obolibrary.org/obo/ro.owl#y
body: ClassAtom
  class predicate: molecular_function
  argument1: http://purl.obolibrary.org/obo/ro.owl#x
body: ClassAtom
  class predicate: molecular_function
  argument1: http://purl.obolibrary.org/obo/ro.owl#y
head: IndividualPropertyAtom
  property predicate: has input
  argument1: http://purl.obolibrary.org/obo/ro.owl#x
  argument2: http://purl.obolibrary.org/obo/ro.owl#z

enabling an MF enables its parts
comment: GP(X)-enables->MF(Y)-has_part->MF(Z) => GP(X) enables MF(Z), e.g. if GP X enables ATPase coupled transporter activity' and 'ATPase coupled transporter activity' has_part 'ATPase activity' then GP(X) enables 'ATPase activity'
type: Imp
body: ClassAtom
  class predicate: molecular_function
  argument1: y
body: IndividualPropertyAtom
  property predicate: enables
  argument1: x
  argument2: y
body: IndividualPropertyAtom
  property predicate: has part
  argument1: y
  argument2: z
head: IndividualPropertyAtom
  property predicate: enables
  argument1: x
  argument2: z

involved in BP
is rule enabled: true
comment: GP(X)-enables->MF(Y)-part_of->BP(Z) => GP(X) involved_in BP(Z) e.g. if X enables 'protein kinase activity' and Y 'part of' 'signal tranduction' then X involved in 'signal transduction'
type: Imp
body: ClassAtom
  class predicate: biological_process
  argument1: z
body: IndividualPropertyAtom
  property predicate: part of
  argument1: y
  argument2: z
body: IndividualPropertyAtom
  property predicate: enables
  argument1: x
  argument2: y
head: IndividualPropertyAtom
  property predicate: involved in
  argument1: x
  argument2: z

inferring direct reg edge from input to regulatory subfunction
comment: If a molecular function (X) has a regulatory subfunction, then any gene product which is an input to that subfunction has an activity that directly_regulates X. Note: this is intended for cases where the regaultory subfunction is protein binding, so it could be tightened with an additional clause to specify this.
type: Imp
body: IndividualPropertyAtom
  property predicate: input of
  argument1: B
  argument2: C
body: IndividualPropertyAtom
  property predicate: enabled by
  argument1: A
  argument2: B
body: IndividualPropertyAtom
  property predicate: has regulatory component activity
  argument1: D
  argument2: C
head: IndividualPropertyAtom
  property predicate: directly regulates
  argument1: A
  argument2: D

inferring direct neg reg edge from input to regulatory subfunction
type: Imp
body: IndividualPropertyAtom
  property predicate: input of
  argument1: B
  argument2: C
body: IndividualPropertyAtom
  property predicate: enabled by
  argument1: A
  argument2: B
body: IndividualPropertyAtom
  property predicate: has negative regulatory component activity
  argument1: D
  argument2: C
head: IndividualPropertyAtom
  property predicate: directly negatively regulates
  argument1: A
  argument2: D

inferring direct positive reg edge from input to regulatory subfunction
type: Imp
body: IndividualPropertyAtom
  property predicate: input of
  argument1: B
  argument2: C
body: IndividualPropertyAtom
  property predicate: enabled by
  argument1: A
  argument2: B
body: IndividualPropertyAtom
  property predicate: has positive regulatory component activity
  argument1: D
  argument2: C
head: IndividualPropertyAtom
  property predicate: directly positively regulates
  argument1: A
  argument2: D

effector input is compound function input
type: Imp
body: IndividualPropertyAtom
  property predicate: has input
  argument1: eff
  argument2: in
body: IndividualPropertyAtom
  property predicate: has effector activity
  argument1: mf
  argument2: eff
head: IndividualPropertyAtom
  property predicate: has input
  argument1: mf
  argument2: in

Input of effector is input of its parent MF
type: Imp
body: IndividualPropertyAtom
  property predicate: has input
  argument1: mf
  argument2: in
body: IndividualPropertyAtom
  property predicate: has effector activity
  argument1: mf
  argument2: eff
head: IndividualPropertyAtom
  property predicate: has input
  argument1: eff
  argument2: in

Imp
comment: if effector directly regulates X, its parent MF directly regulates X
body: IndividualPropertyAtom
  property predicate: has effector activity
  argument1: mf
  argument2: eff
body: IndividualPropertyAtom
  property predicate: directly regulates
  argument1: mf
  argument2: mf2
head: IndividualPropertyAtom
  property predicate: directly regulates
  argument1: eff
  argument2: mf2

Imp
comment: if effector directly positively regulates X, its parent MF directly positively regulates X
body: IndividualPropertyAtom
  property predicate: directly positively regulates
  argument1: mf
  argument2: mf2
body: IndividualPropertyAtom
  property predicate: has effector activity
  argument1: mf
  argument2: eff
head: IndividualPropertyAtom
  property predicate: directly positively regulates
  argument1: eff
  argument2: mf2

if effector directly negatively regulates X, its parent MF directly negatively regulates X
type: Imp
body: IndividualPropertyAtom
  property predicate: has effector activity
  argument1: mf
  argument2: eff
body: IndividualPropertyAtom
  property predicate: directly negatively regulates
  argument1: mf
  argument2: mf2
head: IndividualPropertyAtom
  property predicate: directly negatively regulates
  argument1: eff
  argument2: mf2

'causally downstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).
type: Imp
body: IndividualPropertyAtom
  property predicate: causally downstream of
  argument1: x
  argument2: y
body: IndividualPropertyAtom
  property predicate: overlaps
  argument1: x
  argument2: y
head: ClassAtom
  class predicate: Nothing
  argument1: x
head: ClassAtom
  class predicate: Nothing
  argument1: y

'causally upstream of' and 'overlaps' should be disjoint properties (a SWRL rule is required because these are non-simple properties).
type: Imp
body: IndividualPropertyAtom
  property predicate: causally upstream of
  argument1: x
  argument2: y
body: IndividualPropertyAtom
  property predicate: overlaps
  argument1: x
  argument2: y
head: ClassAtom
  class predicate: Nothing
  argument1: x
head: ClassAtom
  class predicate: Nothing
  argument1: y