Workflow: fastq_clean_se.cwl
Fetched 2023-01-12 07:05:09 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| input | https://w3id.org/cwl/view/git/0c1a40ea1efb1656644ccec0b7abe659539340e7/tools/readgroup.yml#readgroup_fastq_se_file | ||
| job_uuid | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| json_to_sqlite |
../../tools/json_to_sqlite.cwl
(CommandLineTool)
|
||
| fastq_cleaner_se |
../../tools/fastq_cleaner_se.cwl
(CommandLineTool)
|
||
| emit_readgroup_fastq_se_file |
../../tools/emit_readgroup_fastq_se_file.cwl
(ExpressionTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output | https://w3id.org/cwl/view/git/0c1a40ea1efb1656644ccec0b7abe659539340e7/tools/readgroup.yml#readgroup_fastq_se_file | ||
| sqlite | File |
Permalink:
https://w3id.org/cwl/view/git/0c1a40ea1efb1656644ccec0b7abe659539340e7/workflows/bamfastq_align/fastq_clean_se.cwl
