#!/usr/bin/env cwl-runner cwlVersion: v1.0 class: Workflow # Inspired by # https://github.com/InSilicoDB/pipeline-kallisto/blob/develop/main.nf hints: DockerRequirement: dockerPull: insilicodb/kallisto inputs: transcripciones: File[] lecturas: File[] steps: indexing: run: ../tools/kallisto-index.cwl in: fasta-files: transcripciones out: - index quantifying: run: ../tools/kallisto-quant.cwl in: index: indexing/index fastqs: lecturas out: - quantification outputs: resultados: type: File outputSource: quantifying/quantification