Workflow: stage_data_workflow.cwl
Fetched 2023-01-08 22:48:03 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bam_uuid | String | ||
| gtf_uuid | String | ||
| bioclient_config | File | ||
| gene_lengths_uuid | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| extract_bam |
../../tools/bioclient_download.cwl
(CommandLineTool)
|
||
| extract_gtf |
../../tools/bioclient_download.cwl
(CommandLineTool)
|
||
| extract_gene_lengths |
../../tools/bioclient_download.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| bam | File | ||
| gtf | File | ||
| gene_lengths | File |
Permalink:
https://w3id.org/cwl/view/git/1ba6b619154cf892c45dec3977fbd25153bcebab/workflows/subworkflows/stage_data_workflow.cwl
