digraph workflow { graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 331 545 331 545 0 ", bb="0,0,545,331", bgcolor="#eeeeee", clusterrank=local, color=black, dpi=96, fontsize=10, labeljust=left, nodesep=0.05, ranksep=0.22, xdotversion=1.7 ]; node [color=black, fillcolor=lightgoldenrodyellow, fontcolor=black, fontname=Helvetica, fontsize=10, height=0, label="\N", shape=record, style=filled, width=0 ]; edge [arrowsize=0.7, color=black, fontcolor=black, fontname=Helvetica, fontsize=8 ]; subgraph cluster_inputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 268 8 323 443 323 443 268 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 311 0 84 15 -Workflow Inputs ", bb="8,268,443,323", label="Workflow Inputs", lheight=0.15, lp="58,313.5", lwidth=1.17, rank=same, style=dashed ]; hmms_tab [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 104 276.5 104 295.5 172 295.5 172 276.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 138 283.5 0 52 8 -hmms_tab ", fillcolor="#94DDF4", height=0.27778, label=hmms_tab, pos="138,286", rects="104,276.5,172,295.5", width=0.94444]; asn_cache [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 319 276.5 319 295.5 387 295.5 387 276.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 353 283.5 0 52 9 -asn_cache ", fillcolor="#94DDF4", height=0.27778, label=asn_cache, pos="353,286", rects="319,276.5,387,295.5", width=0.94444]; hmm_path [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 245.5 276.5 245.5 295.5 314.5 295.5 314.5 276.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 280 283.5 0 53 8 -hmm_path ", fillcolor="#94DDF4", height=0.27778, label=hmm_path, pos="280,286", rects="245.5,276.5,314.5,295.5", width=0.95833]; hmm_hits [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 176.5 276.5 176.5 295.5 241.5 295.5 241.5 276.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 209 283.5 0 49 8 -hmm_hits ", fillcolor="#94DDF4", height=0.27778, label=hmm_hits, pos="209,286", rects="176.5,276.5,241.5,295.5", width=0.90278]; uniColl_cache [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 276.5 16 295.5 100 295.5 100 276.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 58 283.5 0 68 13 -uniColl_cache ", fillcolor="#94DDF4", height=0.27778, label=uniColl_cache, pos="58,286", rects="16,276.5,100,295.5", width=1.1667]; inseq [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 391.5 276.5 391.5 295.5 434.5 295.5 434.5 276.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 413 283.5 0 27 5 -inseq ", fillcolor="#94DDF4", height=0.27778, label=inseq, pos="413,286", rects="391.5,276.5,434.5,295.5", width=0.59722]; } subgraph cluster_outputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 243 8 243 63 351 63 351 8 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 297 15 0 92 16 -Workflow Outputs ", bb="243,8,351,63", label="Workflow Outputs", labelloc=b, lheight=0.15, lp="297,17.5", lwidth=1.28, rank=same, style=dashed ]; aligns [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 274 35.5 274 54.5 320 54.5 320 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 297 42.5 0 30 6 -aligns ", fillcolor="#94DDF4", height=0.27778, label=aligns, pos="297,45", rects="274,35.5,320,54.5", width=0.63889]; } hmmsearch [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 244.5 133.5 244.5 152.5 349.5 152.5 349.5 133.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 297 140.5 0 89 17 -Search All HMMs I ", fillcolor="#F3CEA1", height=0.27778, label="Search All HMMs I", pos="297,143", rects="244.5,133.5,349.5,152.5", width=1.4583]; hmms_tab -> hmmsearch [_draw_="c 7 -#000000 B 10 139.2 276.63 141.63 261.6 148.13 229.44 162 206 176.25 181.93 181.33 174.18 206 161 215.38 155.99 225.98 152.44 \ 236.56 149.92 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 236.8 152.37 243.13 148.5 235.78 147.58 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 183.5 208.6 0 43 8 -hmms_tab ", label=hmms_tab, lp="183.5,210.5", pos="e,244.61,148.19 139.2,276.63 141.63,261.6 148.13,229.44 162,206 176.25,181.93 181.33,174.18 206,161 215.38,155.99 225.98,152.44 \ 236.56,149.92"]; gp_getorf [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 363 223.5 363 242.5 425 242.5 425 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 394 230.5 0 46 8 -Get ORFs ", height=0.27778, label="Get ORFs", pos="394,233", rects="363,223.5,425,242.5", width=0.86111]; asn_cache -> gp_getorf [_draw_="c 7 -#000000 B 7 351.22 276.66 350.12 269.25 349.79 258.47 355 251 355.84 249.79 356.79 248.67 357.82 247.63 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 359.26 249.61 363.3 243.4 356.26 245.74 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 377 253.6 0 44 9 -asn_cache ", label=asn_cache, lp="377,255.5", pos="e,364.5,242.47 351.22,276.66 350.12,269.25 349.79,258.47 355,251 355.84,249.79 356.79,248.67 357.82,247.63"]; hmm_path -> hmmsearch [_draw_="c 7 -#000000 B 10 266.76 276.51 250.09 264.94 222.26 242.47 211 215 205.35 201.22 189.96 188.54 214 161 217.62 156.85 226.23 153.67 \ 236.6 151.26 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 236.98 153.68 243.33 149.86 235.98 148.88 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 232.5 208.6 0 43 8 -hmm_path ", label=hmm_path, lp="232.5,210.5", pos="e,244.82,149.55 266.76,276.51 250.09,264.94 222.26,242.47 211,215 205.35,201.22 189.96,188.54 214,161 217.62,156.85 226.23,153.67 \ 236.6,151.26"]; bacterial_hit_mapping [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 252.5 88.5 252.5 107.5 341.5 107.5 341.5 88.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 297 95.5 0 73 12 -Map HMM Hits ", height=0.27778, label="Map HMM Hits", pos="297,98", rects="252.5,88.5,341.5,107.5", width=1.2361]; uniColl_cache -> bacterial_hit_mapping [_draw_="c 7 -#000000 B 10 68.02 276.74 78.05 267.47 92 251.45 92 234 92 234 92 234 92 142 92 110.92 183.42 102.17 244.16 99.79 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 244.1 102.25 251.01 99.55 243.92 97.35 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 120 186.1 0 56 13 -unicoll_cache ", label=unicoll_cache, lp="120,188", pos="e,252.52,99.497 68.017,276.74 78.046,267.47 92,251.45 92,234 92,234 92,234 92,142 92,110.92 183.42,102.17 244.16,99.792"]; uniColl_cache -> bacterial_hit_mapping [_draw_="c 7 -#000000 B 13 53.08 276.66 47.75 266.81 40 249.77 40 234 40 234 40 234 40 142 40 110.89 74.74 123.23 105 116 151.34 104.93 205.52 \ 100.92 244.49 99.53 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 244.13 102 251.05 99.33 243.98 97.1 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 62 186.1 0 44 9 -asn_cache ", label=asn_cache, lp="62,188", pos="e,252.57,99.277 53.081,276.66 47.752,266.81 40,249.77 40,234 40,234 40,234 40,142 40,110.89 74.737,123.23 105,116 151.34,104.93 \ 205.52,100.92 244.49,99.534"]; inseq -> gp_getorf [_draw_="c 7 -#000000 B 4 409.86 276.58 407.18 269.37 403.24 258.81 399.96 250 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 402.35 249.39 397.61 243.68 397.76 251.1 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 414 253.6 0 22 5 -input ", label=input, lp="414,255.5", pos="e,397.08,242.26 409.86,276.58 407.18,269.37 403.24,258.81 399.96,250"]; get_off_frame_orfs [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 400.5 35.5 400.5 54.5 511.5 54.5 511.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 456 42.5 0 95 18 -Get off-frame ORFs ", height=0.27778, label="Get off-frame ORFs", pos="456,45", rects="400.5,35.5,511.5,54.5", width=1.5417]; gp_getorf -> get_off_frame_orfs [_draw_="c 7 -#000000 B 10 424.9 231.6 455.24 229.38 497 220.59 497 189 497 189 497 189 497 97 497 81.95 486.02 68.81 475.42 59.65 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 477.14 57.89 470.15 55.42 474.08 61.71 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 521 141.1 0 48 11 -seq_entries ", label=seq_entries, lp="521,143", pos="e,468.97,54.468 424.9,231.6 455.24,229.38 497,220.59 497,189 497,189 497,189 497,97 497,81.947 486.02,68.814 475.42,59.646"]; gp_getorf -> hmmsearch [_draw_="c 7 -#000000 B 7 390.92 223.67 384.45 206.66 369.13 168.84 358 161 355.17 159 352.11 157.24 348.93 155.69 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 350.1 153.52 342.7 153.02 348.17 158.03 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 401 186.1 0 44 9 -asn_cache ", label=asn_cache, lp="401,188", pos="e,341.31,152.42 390.92,223.67 384.45,206.66 369.13,168.84 358,161 355.17,159 352.11,157.24 348.93,155.69"]; protein_extract [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 252.5 178.5 252.5 197.5 369.5 197.5 369.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 311 185.5 0 101 20 -Extract ORF Proteins ", height=0.27778, label="Extract ORF Proteins", pos="311,188", rects="252.5,178.5,369.5,197.5", width=1.625]; gp_getorf -> protein_extract [_draw_="c 7 -#000000 B 7 370.99 223.56 364.73 221.03 358.02 218.09 352 215 344.51 211.15 336.63 206.35 329.79 201.92 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 331.31 199.99 324.12 198.16 328.61 204.07 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 363 208.6 0 22 5 -input ", label=input, lp="363,210.5", pos="e,322.86,197.33 370.99,223.56 364.73,221.03 358.02,218.09 352,215 344.51,211.15 336.63,206.35 329.79,201.92"]; gp_getorf -> bacterial_hit_mapping [_draw_="c 7 -#000000 B 13 423.02 223.69 426.89 221.44 430.41 218.6 433 215 447.07 195.47 445.96 183.34 437 161 426.7 135.32 418.4 129.04 \ 394 116 380.51 108.79 364.61 104.55 349.63 102.07 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 350.2 99.68 342.92 101.09 349.49 104.53 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 462 163.6 0 44 9 -seq_cache ", label=seq_cache, lp="462,165.5", pos="e,341.42,100.87 423.02,223.69 426.89,221.44 430.41,218.6 433,215 447.07,195.47 445.96,183.34 437,161 426.7,135.32 418.4,129.04 394,\ 116 380.51,108.79 364.61,104.55 349.63,102.07"]; gp_getorf -> bacterial_hit_mapping [_draw_="c 7 -#000000 B 7 363.24 232.69 320.34 231.69 245.5 222.22 225 170 214.93 144.34 244.29 123.45 268.51 111.13 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 269.54 113.35 274.77 108.1 267.4 108.94 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 247 163.6 0 44 9 -asn_cache ", label=asn_cache, lp="247,165.5", pos="e,276.13,107.44 363.24,232.69 320.34,231.69 245.5,222.22 225,170 214.93,144.34 244.29,123.45 268.51,111.13"]; gp_getorf -> bacterial_hit_mapping [_draw_="c 7 -#000000 B 13 403.85 223.77 415.91 212.68 433.44 192.65 422 178 412.98 166.44 402.69 177.34 390 170 361.16 153.31 365.52 134.78 \ 338 116 335.43 114.25 332.65 112.62 329.79 111.13 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 330.87 108.93 323.5 108.15 328.77 113.36 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 413 163.6 0 46 9 -sequences ", label=sequences, lp="413,165.5", pos="e,322.13,107.5 403.85,223.77 415.91,212.68 433.44,192.65 422,178 412.98,166.44 402.69,177.34 390,170 361.16,153.31 365.52,134.78 \ 338,116 335.43,114.25 332.65,112.62 329.79,111.13"]; hmmsearch -> bacterial_hit_mapping [_draw_="c 7 -#000000 B 4 297 133.71 297 128.59 297 121.85 297 115.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 299.45 115.78 297 108.78 294.55 115.78 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 317 118.6 0 40 8 -hmm_hits ", label=hmm_hits, lp="317,120.5", pos="e,297,107.27 297,133.71 297,128.59 297,121.85 297,115.67"]; protein_extract -> hmmsearch [_draw_="c 7 -#000000 B 7 310.52 178.61 310.02 173.41 309.02 166.68 307 161 306.87 160.63 306.73 160.26 306.58 159.89 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 308.79 158.82 303.44 153.69 304.42 161.04 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 323 163.6 0 28 6 -seqids ", label=seqids, lp="323,165.5", pos="e,302.75,152.34 310.52,178.61 310.02,173.41 309.02,166.68 307,161 306.87,160.63 306.73,160.26 306.58,159.89"]; protein_extract -> hmmsearch [_draw_="c 7 -#000000 B 7 329.07 178.51 336.48 173.82 342.41 167.6 338 161 337.18 159.77 336.24 158.62 335.23 157.56 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 336.79 155.68 329.77 153.28 333.77 159.53 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 348 163.6 0 18 4 -lds2 ", label=lds2, lp="348,165.5", pos="e,328.58,152.34 329.07,178.51 336.48,173.82 342.41,167.6 338,161 337.18,159.77 336.24,158.62 335.23,157.56"]; protein_extract -> hmmsearch [_draw_="c 7 -#000000 B 7 281.31 178.65 277.63 176.42 274.35 173.58 272 170 269.21 165.74 270.72 161.56 274.07 157.84 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 275.57 159.78 279.36 153.4 272.42 156.02 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 289 163.6 0 34 8 -proteins ", label=proteins, lp="289,165.5", pos="e,280.52,152.43 281.31,178.65 277.63,176.42 274.35,173.58 272,170 269.21,165.74 270.72,161.56 274.07,157.84"]; bacterial_hit_mapping -> aligns [_draw_="c 7 -#000000 B 4 297 88.58 297 81.52 297 71.24 297 62.55 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 299.45 62.78 297 55.78 294.55 62.78 ", pos="e,297,54.265 297,88.578 297,81.523 297,71.24 297,62.547"]; bacterial_hit_mapping -> get_off_frame_orfs [_draw_="c 7 -#000000 B 4 323.26 88.58 350.18 79.94 392.2 66.47 421.73 56.99 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 422.35 59.37 428.26 54.9 420.85 54.7 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 388.5 73.6 0 25 6 -aligns ", label=aligns, lp="388.5,75.5", pos="e,429.71,54.434 323.26,88.578 350.18,79.941 392.2,66.465 421.73,56.992"]; }