Workflow: Bacterial Annotation (two-pass)
Fetched 2023-01-04 23:45:50 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| inseq | File | ||
| hmm_hits | File | ||
| hmm_path | Directory | ||
| hmms_tab | File | ||
| asn_cache | Directory | ||
| uniColl_cache | Directory |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| gp_getorf |
gp_getorf.cwl
(CommandLineTool)
|
Get ORFs | |
| hmmsearch |
wf_hmmsearch.cwl
(Workflow)
|
Search All HMMs I | |
| protein_extract |
protein_extract.cwl
(CommandLineTool)
|
Extract ORF Proteins | |
| get_off_frame_orfs |
get_off_frame_orfs.cwl
(CommandLineTool)
|
Get off-frame ORFs | |
| bacterial_hit_mapping |
bacterial_hit_mapping.cwl
(CommandLineTool)
|
Map HMM Hits |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| aligns | File |
Permalink:
https://w3id.org/cwl/view/git/21baa197e2c87a71e48794cef96d24c52518a99c/bacterial_annot/wf_bacterial_annot.cwl
