digraph workflow { graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 241 9645.5 241 9645.5 0 ", bb="0,0,9645.5,241", bgcolor="#eeeeee", clusterrank=local, color=black, dpi=96, fontsize=10, labeljust=left, nodesep=0.05, ranksep=0.22, xdotversion=1.7 ]; node [color=black, fillcolor=lightgoldenrodyellow, fontcolor=black, fontname=Helvetica, fontsize=10, height=0, label="\N", shape=record, style=filled, width=0 ]; edge [arrowsize=0.7, color=black, fontcolor=black, fontname=Helvetica, fontsize=8 ]; subgraph cluster_outputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 250.5 8 250.5 63 8705.5 63 8705.5 8 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 304.5 15 0 92 16 -Workflow Outputs ", bb="250.5,8,8705.5,63", label="Workflow Outputs", labelloc=b, lheight=0.15, lp="304.5,17.5", lwidth=1.28, rank=same, style=dashed ]; somalier_concordance_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5891.5 35.5 5891.5 54.5 6059.5 54.5 6059.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5975.5 42.5 0 152 28 -somalier_concordance_metrics ", fillcolor="#94DDF4", height=0.27778, label=somalier_concordance_metrics, pos="5975.5,45", rects="5891.5,35.5,6059.5,54.5", width=2.3333]; 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varscan_unfiltered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 8462 35.5 8462 54.5 8589 54.5 8589 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 8525.5 42.5 0 111 22 -varscan_unfiltered_vcf ", fillcolor="#94DDF4", height=0.27778, label=varscan_unfiltered_vcf, pos="8525.5,45", rects="8462,35.5,8589,54.5", width=1.7639]; docm_filtered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 8593.5 35.5 8593.5 54.5 8697.5 54.5 8697.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 8645.5 42.5 0 88 17 -docm_filtered_vcf ", fillcolor="#94DDF4", height=0.27778, label=docm_filtered_vcf, pos="8645.5,45", rects="8593.5,35.5,8697.5,54.5", width=1.4444]; normal_alignment_summary_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3156.5 35.5 3156.5 54.5 3356.5 54.5 3356.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3256.5 42.5 0 184 32 -normal_alignment_summary_metrics ", fillcolor="#94DDF4", height=0.27778, label=normal_alignment_summary_metrics, pos="3256.5,45", rects="3156.5,35.5,3356.5,54.5", width=2.7778]; normal_hs_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3360.5 35.5 3360.5 54.5 3470.5 54.5 3470.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3415.5 42.5 0 94 17 -normal_hs_metrics ", fillcolor="#94DDF4", height=0.27778, label=normal_hs_metrics, pos="3415.5,45", rects="3360.5,35.5,3470.5,54.5", width=1.5278]; normal_antitarget_coverage [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5258 35.5 5258 54.5 5413 54.5 5413 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5335.5 42.5 0 139 26 -normal_antitarget_coverage ", fillcolor="#94DDF4", height=0.27778, label=normal_antitarget_coverage, pos="5335.5,45", rects="5258,35.5,5413,54.5", width=2.1528]; normal_verify_bam_id_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3475 35.5 3475 54.5 3642 54.5 3642 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3558.5 42.5 0 151 28 -normal_verify_bam_id_metrics ", fillcolor="#94DDF4", height=0.27778, label=normal_verify_bam_id_metrics, pos="3558.5,45", rects="3475,35.5,3642,54.5", width=2.3194]; tumor_indel_bam_readcount_tsv [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6586.5 35.5 6586.5 54.5 6762.5 54.5 6762.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6674.5 42.5 0 160 29 -tumor_indel_bam_readcount_tsv ", fillcolor="#94DDF4", height=0.27778, label=tumor_indel_bam_readcount_tsv, pos="6674.5,45", rects="6586.5,35.5,6762.5,54.5", width=2.4444]; tumor_cram [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3076.5 35.5 3076.5 54.5 3152.5 54.5 3152.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3114.5 42.5 0 60 10 -tumor_cram ", fillcolor="#94DDF4", height=0.27778, label=tumor_cram, pos="3114.5,45", rects="3076.5,35.5,3152.5,54.5", width=1.0556]; tumor_flagstats [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1615 35.5 1615 54.5 1708 54.5 1708 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1661.5 42.5 0 77 15 -tumor_flagstats ", fillcolor="#94DDF4", height=0.27778, label=tumor_flagstats, pos="1661.5,45", rects="1615,35.5,1708,54.5", width=1.2917]; normal_snv_bam_readcount_tsv [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6767 35.5 6767 54.5 6942 54.5 6942 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6854.5 42.5 0 159 28 -normal_snv_bam_readcount_tsv ", fillcolor="#94DDF4", height=0.27778, label=normal_snv_bam_readcount_tsv, pos="6854.5,45", rects="6767,35.5,6942,54.5", width=2.4306]; normal_per_base_hs_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3646 35.5 3646 54.5 3805 54.5 3805 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3725.5 42.5 0 143 26 -normal_per_base_hs_metrics ", fillcolor="#94DDF4", height=0.27778, label=normal_per_base_hs_metrics, pos="3725.5,45", rects="3646,35.5,3805,54.5", width=2.2083]; tumor_insert_size_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1712.5 35.5 1712.5 54.5 1858.5 54.5 1858.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1785.5 42.5 0 130 25 -tumor_insert_size_metrics ", fillcolor="#94DDF4", height=0.27778, label=tumor_insert_size_metrics, pos="1785.5,45", rects="1712.5,35.5,1858.5,54.5", width=2.0278]; strelka_filtered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6946.5 35.5 6946.5 54.5 7056.5 54.5 7056.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7001.5 42.5 0 94 20 -strelka_filtered_vcf ", fillcolor="#94DDF4", height=0.27778, label=strelka_filtered_vcf, pos="7001.5,45", rects="6946.5,35.5,7056.5,54.5", width=1.5278]; intervals_target [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5417.5 35.5 5417.5 54.5 5511.5 54.5 5511.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5464.5 42.5 0 78 16 -intervals_target ", fillcolor="#94DDF4", height=0.27778, label=intervals_target, pos="5464.5,45", rects="5417.5,35.5,5511.5,54.5", width=1.3056]; tumor_summary_hs_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1862.5 35.5 1862.5 54.5 2018.5 54.5 2018.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1940.5 42.5 0 140 24 -tumor_summary_hs_metrics ", fillcolor="#94DDF4", height=0.27778, label=tumor_summary_hs_metrics, pos="1940.5,45", rects="1862.5,35.5,2018.5,54.5", width=2.1667]; pindel_filtered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7061 35.5 7061 54.5 7168 54.5 7168 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7114.5 42.5 0 91 19 -pindel_filtered_vcf ", fillcolor="#94DDF4", height=0.27778, label=pindel_filtered_vcf, pos="7114.5,45", rects="7061,35.5,7168,54.5", width=1.4861]; normal_verify_bam_id_depth [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3809.5 35.5 3809.5 54.5 3967.5 54.5 3967.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3888.5 42.5 0 142 26 -normal_verify_bam_id_depth ", fillcolor="#94DDF4", height=0.27778, label=normal_verify_bam_id_depth, pos="3888.5,45", rects="3809.5,35.5,3967.5,54.5", width=2.1944]; final_filtered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7172.5 35.5 7172.5 54.5 7270.5 54.5 7270.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7221.5 42.5 0 82 18 -final_filtered_vcf ", fillcolor="#94DDF4", height=0.27778, label=final_filtered_vcf, pos="7221.5,45", rects="7172.5,35.5,7270.5,54.5", width=1.3611]; all_candidates [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6163 35.5 6163 54.5 6250 54.5 6250 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6206.5 42.5 0 71 14 -all_candidates ", fillcolor="#94DDF4", height=0.27778, label=all_candidates, pos="6206.5,45", rects="6163,35.5,6250,54.5", width=1.2083]; pindel_unfiltered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7275 35.5 7275 54.5 7394 54.5 7394 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7334.5 42.5 0 103 21 -pindel_unfiltered_vcf ", fillcolor="#94DDF4", height=0.27778, label=pindel_unfiltered_vcf, pos="7334.5,45", rects="7275,35.5,7394,54.5", width=1.6528]; vep_summary [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7398.5 35.5 7398.5 54.5 7484.5 54.5 7484.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7441.5 42.5 0 70 11 -vep_summary ", fillcolor="#94DDF4", height=0.27778, label=vep_summary, pos="7441.5,45", rects="7398.5,35.5,7484.5,54.5", width=1.1944]; tumor_per_target_hs_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2022.5 35.5 2022.5 54.5 2182.5 54.5 2182.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2102.5 42.5 0 144 27 -tumor_per_target_hs_metrics ", fillcolor="#94DDF4", height=0.27778, label=tumor_per_target_hs_metrics, pos="2102.5,45", rects="2022.5,35.5,2182.5,54.5", width=2.2222]; final_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7488.5 35.5 7488.5 54.5 7546.5 54.5 7546.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7517.5 42.5 0 42 9 -final_vcf ", fillcolor="#94DDF4", height=0.27778, label=final_vcf, pos="7517.5,45", rects="7488.5,35.5,7546.5,54.5", width=0.80556]; cn_diagram [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5515.5 35.5 5515.5 54.5 5589.5 54.5 5589.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5552.5 42.5 0 58 10 -cn_diagram ", fillcolor="#94DDF4", height=0.27778, label=cn_diagram, pos="5552.5,45", rects="5515.5,35.5,5589.5,54.5", width=1.0278]; reference_coverage [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5594 35.5 5594 54.5 5707 54.5 5707 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5650.5 42.5 0 97 18 -reference_coverage ", fillcolor="#94DDF4", height=0.27778, label=reference_coverage, pos="5650.5,45", rects="5594,35.5,5707,54.5", width=1.5694]; normal_flagstats [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3971.5 35.5 3971.5 54.5 4069.5 54.5 4069.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4020.5 42.5 0 82 16 -normal_flagstats ", fillcolor="#94DDF4", height=0.27778, label=normal_flagstats, pos="4020.5,45", rects="3971.5,35.5,4069.5,54.5", width=1.3611]; tumor_per_base_coverage_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 258.5 35.5 258.5 54.5 446.5 54.5 446.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 352.5 42.5 0 172 31 -tumor_per_base_coverage_metrics ", fillcolor="#94DDF4", height=0.27778, label=tumor_per_base_coverage_metrics, pos="352.5,45", rects="258.5,35.5,446.5,54.5", width=2.6111]; tumor_snv_bam_readcount_tsv [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7550.5 35.5 7550.5 54.5 7720.5 54.5 7720.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7635.5 42.5 0 154 27 -tumor_snv_bam_readcount_tsv ", fillcolor="#94DDF4", height=0.27778, label=tumor_snv_bam_readcount_tsv, pos="7635.5,45", rects="7550.5,35.5,7720.5,54.5", width=2.3611]; tumor_target_coverage [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4342 35.5 4342 54.5 4473 54.5 4473 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4407.5 42.5 0 115 21 -tumor_target_coverage ", fillcolor="#94DDF4", height=0.27778, label=tumor_target_coverage, pos="4407.5,45", rects="4342,35.5,4473,54.5", width=1.8194]; tumor_bin_level_ratios [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4477.5 35.5 4477.5 54.5 4605.5 54.5 4605.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4541.5 42.5 0 112 22 -tumor_bin_level_ratios ", fillcolor="#94DDF4", height=0.27778, label=tumor_bin_level_ratios, pos="4541.5,45", rects="4477.5,35.5,4605.5,54.5", width=1.7778]; 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mutect_unfiltered_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7840 35.5 7840 54.5 7963 54.5 7963 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7901.5 42.5 0 107 21 -mutect_unfiltered_vcf ", fillcolor="#94DDF4", height=0.27778, label=mutect_unfiltered_vcf, pos="7901.5,45", rects="7840,35.5,7963,54.5", width=1.7083]; } subgraph cluster_inputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 444.5 178 444.5 233 9637.5 233 9637.5 178 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 494.5 221 0 84 15 -Workflow Inputs ", bb="444.5,178,9637.5,233", label="Workflow Inputs", lheight=0.15, lp="494.5,223.5", lwidth=1.17, rank=same, style=dashed ]; omni_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1104.5 186.5 1104.5 205.5 1166.5 205.5 1166.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1135.5 193.5 0 46 8 -omni_vcf ", fillcolor="#94DDF4", height=0.27778, label=omni_vcf, pos="1135.5,196", rects="1104.5,186.5,1166.5,205.5", width=0.86111]; mutect_max_alt_allele_in_normal_fraction [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 9321 186.5 9321 205.5 9546 205.5 9546 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9433.5 193.5 0 209 40 -mutect_max_alt_allele_in_normal_fraction ", fillcolor="#94DDF4", height=0.27778, label=mutect_max_alt_allele_in_normal_fraction, pos="9433.5,196", rects="9321,186.5,9546,205.5", width=3.125]; vep_cache_dir [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6297.5 186.5 6297.5 205.5 6383.5 205.5 6383.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6340.5 193.5 0 70 13 -vep_cache_dir ", fillcolor="#94DDF4", height=0.27778, label=vep_cache_dir, pos="6340.5,196", rects="6297.5,186.5,6383.5,205.5", width=1.1944]; normal_name [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2684.5 186.5 2684.5 205.5 2994.5 205.5 2994.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2839.5 193.5 0 294 56 -normal_name: String specifying the name of the WT sample ", fillcolor="#94DDF4", height=0.27778, label="normal_name: String specifying the name of the WT sample", pos="2839.5,196", rects="2684.5,186.5,2994.5,205.5", width=4.3056]; manta_output_contigs [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5478 186.5 5478 205.5 5603 205.5 5603 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5540.5 193.5 0 109 20 -manta_output_contigs ", fillcolor="#94DDF4", height=0.27778, label=manta_output_contigs, pos="5540.5,196", rects="5478,186.5,5603,205.5", width=1.7361]; interval_list [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6387.5 186.5 6387.5 205.5 6461.5 205.5 6461.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6424.5 193.5 0 58 13 -interval_list ", fillcolor="#94DDF4", height=0.27778, label=interval_list, pos="6424.5,196", rects="6387.5,186.5,6461.5,205.5", width=1.0278]; synonyms_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6466 186.5 6466 205.5 6553 205.5 6553 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6509.5 193.5 0 71 13 -synonyms_file ", fillcolor="#94DDF4", height=0.27778, label=synonyms_file, pos="6509.5,196", rects="6466,186.5,6553,205.5", width=1.2083]; qc_minimum_base_quality [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1618.5 186.5 1618.5 205.5 1766.5 205.5 1766.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1692.5 193.5 0 132 23 -qc_minimum_base_quality ", fillcolor="#94DDF4", height=0.27778, label=qc_minimum_base_quality, pos="1692.5,196", rects="1618.5,186.5,1766.5,205.5", width=2.0556]; variants_to_table_fields [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6557 186.5 6557 205.5 6690 205.5 6690 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6623.5 193.5 0 117 24 -variants_to_table_fields ", fillcolor="#94DDF4", height=0.27778, label=variants_to_table_fields, pos="6623.5,196", rects="6557,186.5,6690,205.5", width=1.8472]; 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reference [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4732 186.5 4732 205.5 5011 205.5 5011 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4871.5 193.5 0 263 54 -reference: Reference fasta file for a desired assembly ", fillcolor="#94DDF4", height=0.27778, label="reference: Reference fasta file for a desired assembly", pos="4871.5,196", rects="4732,186.5,5011,205.5", width=3.875]; varscan_min_coverage [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 7009 186.5 7009 205.5 7138 205.5 7138 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7073.5 193.5 0 113 20 -varscan_min_coverage ", fillcolor="#94DDF4", height=0.27778, label=varscan_min_coverage, pos="7073.5,196", rects="7009,186.5,7138,205.5", width=1.7917]; tumor_name [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 452.5 186.5 452.5 205.5 756.5 205.5 756.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 604.5 193.5 0 288 55 -tumor_name: String specifying the name of the MT sample ", fillcolor="#94DDF4", height=0.27778, label="tumor_name: String specifying the name of the MT sample", pos="604.5,196", rects="452.5,186.5,756.5,205.5", width=4.2222]; 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manta_non_wgs [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5903.5 186.5 5903.5 205.5 5999.5 205.5 5999.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5951.5 193.5 0 80 13 -manta_non_wgs ", fillcolor="#94DDF4", height=0.27778, label=manta_non_wgs, pos="5951.5,196", rects="5903.5,186.5,5999.5,205.5", width=1.3333]; somalier_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5393.5 186.5 5393.5 205.5 5473.5 205.5 5473.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5433.5 193.5 0 64 12 -somalier_vcf ", fillcolor="#94DDF4", height=0.27778, label=somalier_vcf, pos="5433.5,196", rects="5393.5,186.5,5473.5,205.5", width=1.1111]; strelka_cpu_reserved [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 8254.5 186.5 8254.5 205.5 8374.5 205.5 8374.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 8314.5 193.5 0 104 20 -strelka_cpu_reserved ", fillcolor="#94DDF4", height=0.27778, label=strelka_cpu_reserved, pos="8314.5,196", rects="8254.5,186.5,8374.5,205.5", width=1.6667]; bqsr_intervals [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1959 186.5 1959 205.5 2390 205.5 2390 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2174.5 193.5 0 415 88 -bqsr_intervals: Array of strings specifying regions for base quality score \ recalibration ", fillcolor="#94DDF4", height=0.27778, label="bqsr_intervals: Array of strings specifying regions for base quality score recalibration", pos="2174.5,196", rects="1959,186.5,2390,205.5", width=5.9861]; vep_ensembl_assembly [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 8378.5 186.5 8378.5 205.5 8512.5 205.5 8512.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 8445.5 193.5 0 118 20 -vep_ensembl_assembly ", fillcolor="#94DDF4", height=0.27778, label=vep_ensembl_assembly, pos="8445.5,196", rects="8378.5,186.5,8512.5,205.5", width=1.8611]; normal_sample_name [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 8517 186.5 8517 205.5 8642 205.5 8642 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 8579.5 193.5 0 109 18 -normal_sample_name ", fillcolor="#94DDF4", height=0.27778, label=normal_sample_name, pos="8579.5,196", rects="8517,186.5,8642,205.5", width=1.7361]; vep_to_table_fields [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 8646 186.5 8646 205.5 8757 205.5 8757 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 8701.5 193.5 0 95 19 -vep_to_table_fields ", fillcolor="#94DDF4", height=0.27778, label=vep_to_table_fields, pos="8701.5,196", rects="8646,186.5,8757,205.5", width=1.5417]; mutect_artifact_detection_mode [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5607.5 186.5 5607.5 205.5 5783.5 205.5 5783.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5695.5 193.5 0 160 30 -mutect_artifact_detection_mode ", fillcolor="#94DDF4", height=0.27778, label=mutect_artifact_detection_mode, pos="5695.5,196", rects="5607.5,186.5,5783.5,205.5", width=2.4444]; per_target_intervals [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2394 186.5 2394 205.5 2509 205.5 2509 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2451.5 193.5 0 99 20 -per_target_intervals ", fillcolor="#94DDF4", height=0.27778, label=per_target_intervals, pos="2451.5,196", rects="2394,186.5,2509,205.5", width=1.5972]; varscan_strand_filter [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 8761 186.5 8761 205.5 8880 205.5 8880 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 8820.5 193.5 0 103 21 -varscan_strand_filter ", fillcolor="#94DDF4", height=0.27778, label=varscan_strand_filter, pos="8820.5,196", rects="8761,186.5,8880,205.5", width=1.6528]; vep_ensembl_version [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 8884 186.5 8884 205.5 9007 205.5 9007 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 8945.5 193.5 0 107 19 -vep_ensembl_version ", fillcolor="#94DDF4", height=0.27778, label=vep_ensembl_version, pos="8945.5,196", rects="8884,186.5,9007,205.5", width=1.7083]; qc_minimum_mapping_quality [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2513 186.5 2513 205.5 2680 205.5 2680 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2596.5 193.5 0 151 26 -qc_minimum_mapping_quality ", fillcolor="#94DDF4", height=0.27778, label=qc_minimum_mapping_quality, pos="2596.5,196", rects="2513,186.5,2680,205.5", width=2.3194]; vep_custom_annotations [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 9011 186.5 9011 205.5 9150 205.5 9150 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9080.5 193.5 0 123 22 -vep_custom_annotations ", fillcolor="#94DDF4", height=0.27778, label=vep_custom_annotations, pos="9080.5,196", rects="9011,186.5,9150,205.5", width=1.9306]; docm_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 9154.5 186.5 9154.5 205.5 9218.5 205.5 9218.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9186.5 193.5 0 48 8 -docm_vcf ", fillcolor="#94DDF4", height=0.27778, label=docm_vcf, pos="9186.5,196", rects="9154.5,186.5,9218.5,205.5", width=0.88889]; tumor_sequence [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1170.5 186.5 1170.5 205.5 1538.5 205.5 1538.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1354.5 193.5 0 352 70 -tumor_sequence: yml file specifying the location of MT sequencing data ", fillcolor="#94DDF4", height=0.27778, label="tumor_sequence: yml file specifying the location of MT sequencing data", pos="1354.5,196", rects="1170.5,186.5,1538.5,205.5", width=5.1111]; summary_intervals [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2999 186.5 2999 205.5 3110 205.5 3110 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3054.5 193.5 0 95 17 -summary_intervals ", fillcolor="#94DDF4", height=0.27778, label=summary_intervals, pos="3054.5,196", rects="2999,186.5,3110,205.5", width=1.5417]; per_base_intervals [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3114 186.5 3114 205.5 3223 205.5 3223 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3168.5 193.5 0 93 18 -per_base_intervals ", fillcolor="#94DDF4", height=0.27778, label=per_base_intervals, pos="3168.5,196", rects="3114,186.5,3223,205.5", width=1.5139]; known_variants [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 9222.5 186.5 9222.5 205.5 9316.5 205.5 9316.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9269.5 193.5 0 78 14 -known_variants ", fillcolor="#94DDF4", height=0.27778, label=known_variants, pos="9269.5,196", rects="9222.5,186.5,9316.5,205.5", width=1.3056]; manta_call_regions [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5787.5 186.5 5787.5 205.5 5899.5 205.5 5899.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5843.5 193.5 0 96 18 -manta_call_regions ", fillcolor="#94DDF4", height=0.27778, label=manta_call_regions, pos="5843.5,196", rects="5787.5,186.5,5899.5,205.5", width=1.5556]; cle_vcf_filter [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 9550 186.5 9550 205.5 9629 205.5 9629 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 9589.5 193.5 0 63 14 -cle_vcf_filter ", fillcolor="#94DDF4", height=0.27778, label=cle_vcf_filter, pos="9589.5,196", rects="9550,186.5,9629,205.5", width=1.0972]; vep_ensembl_species [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6003.5 186.5 6003.5 205.5 6127.5 205.5 6127.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6065.5 193.5 0 108 19 -vep_ensembl_species ", fillcolor="#94DDF4", height=0.27778, label=vep_ensembl_species, pos="6065.5,196", rects="6003.5,186.5,6127.5,205.5", width=1.7222]; vep_pick [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6131.5 186.5 6131.5 205.5 6191.5 205.5 6191.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6161.5 193.5 0 44 8 -vep_pick ", fillcolor="#94DDF4", height=0.27778, label=vep_pick, pos="6161.5,196", rects="6131.5,186.5,6191.5,205.5", width=0.83333]; varscan_p_value [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 6195.5 186.5 6195.5 205.5 6293.5 205.5 6293.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6244.5 193.5 0 82 15 -varscan_p_value ", fillcolor="#94DDF4", height=0.27778, label=varscan_p_value, pos="6244.5,196", rects="6195.5,186.5,6293.5,205.5", width=1.3611]; target_intervals [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3612 186.5 3612 205.5 4013 205.5 4013 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3812.5 193.5 0 385 81 -target_intervals: interval_list file of targets used in the sequencing experiment ", fillcolor="#94DDF4", height=0.27778, label="target_intervals: interval_list file of targets used in the sequencing experiment", pos="3812.5,196", rects="3612,186.5,4013,205.5", width=5.5694]; cosmic_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1543 186.5 1543 205.5 1614 205.5 1614 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1578.5 193.5 0 55 10 -cosmic_vcf ", fillcolor="#94DDF4", height=0.27778, label=cosmic_vcf, pos="1578.5,196", rects="1543,186.5,1614,205.5", width=0.98611]; known_indels [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4017.5 186.5 4017.5 205.5 4379.5 205.5 4379.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4198.5 193.5 0 346 66 -known_indels: File specifying common polymorphic indels from 1000G ", fillcolor="#94DDF4", height=0.27778, label="known_indels: File specifying common polymorphic indels from 1000G", pos="4198.5,196", rects="4017.5,186.5,4379.5,205.5", width=5.0278]; dbsnp_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4383.5 186.5 4383.5 205.5 4727.5 205.5 4727.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4555.5 193.5 0 328 63 -dbsnp_vcf: File specifying common polymorphic indels from dbSNP ", fillcolor="#94DDF4", height=0.27778, label="dbsnp_vcf: File specifying common polymorphic indels from dbSNP", pos="4555.5,196", rects="4383.5,186.5,4727.5,205.5", width=4.7778]; normal_sequence [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 5015.5 186.5 5015.5 205.5 5389.5 205.5 5389.5 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5202.5 193.5 0 358 71 -normal_sequence: yml file specifying the location of WT sequencing data ", fillcolor="#94DDF4", height=0.27778, label="normal_sequence: yml file specifying the location of WT sequencing data", pos="5202.5,196", rects="5015.5,186.5,5389.5,205.5", width=5.1944]; mills [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 761 186.5 761 205.5 1100 205.5 1100 186.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 930.5 193.5 0 323 66 -mills: File specifying common polymorphic indels from mills et al. ", fillcolor="#94DDF4", height=0.27778, label="mills: File specifying common polymorphic indels from mills et al.", pos="930.5,196", rects="761,186.5,1100,205.5", width=4.7083]; } tumor_alignment_and_qc [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 1870.5 133.5 1870.5 152.5 2010.5 152.5 2010.5 133.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1940.5 140.5 0 124 23 -exome alignment with qc ", fillcolor="#F3CEA1", height=0.27778, label="exome alignment with qc", pos="1940.5,143", rects="1870.5,133.5,2010.5,152.5", width=1.9444]; omni_vcf -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 10 1149.67 186.63 1155.86 183.38 1163.33 179.96 1170.5 178 1192.76 171.91 1354.46 162.29 1377.5 161 1550.44 151.29 \ 1753.61 146.88 1862.37 145.08 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1862.2 147.54 1869.16 144.97 1862.12 142.64 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1396 163.6 0 37 8 -omni_vcf ", label=omni_vcf, lp="1396,165.5", pos="e,1870.7,144.95 1149.7,186.63 1155.9,183.38 1163.3,179.96 1170.5,178 1192.8,171.91 1354.5,162.29 1377.5,161 1550.4,151.29 1753.6,\ 146.88 1862.4,145.08"]; normal_alignment_and_qc [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 3222.5 133.5 3222.5 152.5 3362.5 152.5 3362.5 133.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3292.5 140.5 0 124 23 -exome alignment with qc ", fillcolor="#F3CEA1", height=0.27778, label="exome alignment with qc", pos="3292.5,143", rects="3222.5,133.5,3362.5,152.5", width=1.9444]; omni_vcf -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 13 1149.29 186.64 1155.54 183.3 1163.16 179.82 1170.5 178 1222.52 165.12 1358.04 173.71 1411.5 170 1449.4 167.37 \ 1458.57 163.18 1496.5 161 1583.23 156.01 2880.34 146.82 3214.47 144.53 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3214.16 146.98 3221.14 144.48 3214.13 142.08 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1515 163.6 0 37 8 -omni_vcf ", label=omni_vcf, lp="1515,165.5", pos="e,3222.7,144.47 1149.3,186.64 1155.5,183.3 1163.2,179.82 1170.5,178 1222.5,165.12 1358,173.71 1411.5,170 1449.4,167.37 1458.6,163.18 \ 1496.5,161 1583.2,156.01 2880.3,146.82 3214.5,144.53"]; detect_variants [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 7566 88.5 7566 107.5 7705 107.5 7705 88.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 7635.5 95.5 0 123 24 -Detect Variants workflow ", fillcolor="#F3CEA1", height=0.27778, label="Detect Variants workflow", pos="7635.5,98", rects="7566,88.5,7705,107.5", width=1.9306]; vep_cache_dir -> detect_variants [_draw_="c 7 -#000000 B 10 6355.86 186.66 6380.48 173.6 6430.55 148.23 6475.5 133 6507.87 122.03 6516.56 120.07 6550.5 116 6649.47 104.14 \ 7326.32 100.27 7557.95 99.29 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7557.83 101.74 7564.82 99.26 7557.81 96.84 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6504.5 141.1 0 58 13 -vep_cache_dir ", label=vep_cache_dir, lp="6504.5,143", pos="e,7566.3,99.251 6355.9,186.66 6380.5,173.6 6430.6,148.23 6475.5,133 6507.9,122.03 6516.6,120.07 6550.5,116 6649.5,104.14 7326.3,\ 100.27 7558,99.286"]; normal_name -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 7 2850.49 186.78 2862.19 178.54 2881.6 166.35 2900.5 161 2957.34 144.91 3117.1 142.82 3214.23 143.14 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3214.03 145.59 3221.04 143.17 3214.05 140.69 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2923.5 163.6 0 46 10 -final_name ", label=final_name, lp="2923.5,165.5", pos="e,3222.6,143.18 2850.5,186.78 2862.2,178.54 2881.6,166.35 2900.5,161 2957.3,144.91 3117.1,142.82 3214.2,143.14"]; manta [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 5879.5 88.5 5879.5 107.5 6023.5 107.5 6023.5 88.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5951.5 95.5 0 128 24 -Set up and execute manta ", height=0.27778, label="Set up and execute manta", pos="5951.5,98", rects="5879.5,88.5,6023.5,107.5", width=2]; manta_output_contigs -> manta [_draw_="c 7 -#000000 B 7 5573.18 186.55 5584.08 183.77 5596.3 180.71 5607.5 178 5713.74 152.33 5838.94 124.08 5905.1 109.3 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5905.48 111.73 5911.78 107.81 5904.41 106.95 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5829 141.1 0 61 14 -output_contigs ", label=output_contigs, lp="5829,143", pos="e,5913.3,107.48 5573.2,186.55 5584.1,183.77 5596.3,180.71 5607.5,178 5713.7,152.33 5838.9,124.08 5905.1,109.3"]; interval_list -> detect_variants [_draw_="c 7 -#000000 B 16 6444.45 186.52 6451.11 183.74 6458.6 180.68 6465.5 178 6495.91 166.19 6511.56 176.19 6534.5 153 6541.12 146.3 \ 6534.59 139.4 6541.5 133 6563.1 113.01 6576.35 120.05 6605.5 116 6698.63 103.06 7333.81 99.91 7557.64 99.19 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7557.56 101.65 7564.55 99.17 7557.55 96.75 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6565 141.1 0 47 13 -interval_list ", label=interval_list, lp="6565,143", pos="e,7566.1,99.168 6444.4,186.52 6451.1,183.74 6458.6,180.68 6465.5,178 6495.9,166.19 6511.6,176.19 6534.5,153 6541.1,146.3 6534.6,\ 139.4 6541.5,133 6563.1,113.01 6576.3,120.05 6605.5,116 6698.6,103.06 7333.8,99.908 7557.6,99.195"]; synonyms_file -> detect_variants [_draw_="c 7 -#000000 B 13 6536.57 186.61 6553.85 179.99 6575.56 169.15 6589.5 153 6595.65 145.87 6589.46 139.25 6596.5 133 6622.72 109.74 \ 6638.7 120.11 6673.5 116 6760.06 105.78 7344.9 100.93 7558.01 99.48 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7557.86 101.93 7564.84 99.43 7557.82 97.03 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6625.5 141.1 0 58 13 -synonyms_file ", label=synonyms_file, lp="6625.5,143", pos="e,7566.4,99.424 6536.6,186.61 6553.9,179.99 6575.6,169.15 6589.5,153 6595.7,145.87 6589.5,139.25 6596.5,133 6622.7,109.74 6638.7,\ 120.11 6673.5,116 6760.1,105.78 7344.9,100.93 7558,99.48"]; qc_minimum_base_quality -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 7 1674.93 186.75 1662.72 179.95 1650.03 170 1658.5 161 1672.25 146.4 1783.52 143.52 1862.1 143.34 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1862.04 145.79 1869.04 143.33 1862.03 140.89 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1712 163.6 0 107 23 -qc_minimum_base_quality ", label=qc_minimum_base_quality, lp="1712,165.5", pos="e,1870.5,143.33 1674.9,186.75 1662.7,179.95 1650,170 1658.5,161 1672.2,146.4 1783.5,143.52 1862.1,143.34"]; qc_minimum_base_quality -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 10 1724.34 186.53 1736.73 182.5 1750.75 177.01 1762.5 170 1767.63 166.94 1766.93 163.17 1772.5 161 1789.45 154.39 \ 2905.47 146.55 3214.15 144.51 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3214.11 146.96 3221.09 144.46 3214.07 142.06 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1826 163.6 0 107 23 -qc_minimum_base_quality ", label=qc_minimum_base_quality, lp="1826,165.5", pos="e,3222.6,144.45 1724.3,186.53 1736.7,182.5 1750.8,177.01 1762.5,170 1767.6,166.94 1766.9,163.17 1772.5,161 1789.4,154.39 2905.5,\ 146.55 3214.1,144.51"]; variants_to_table_fields -> detect_variants [_draw_="c 7 -#000000 B 13 6631.23 186.54 6638.32 178.43 6648.72 165.59 6655.5 153 6659.96 144.71 6655.22 138.98 6662.5 133 6704.13 98.82 \ 6728.81 120.32 6782.5 116 6931.65 103.99 7376.69 100.35 7557.67 99.35 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7557.59 101.8 7564.57 99.31 7557.56 96.9 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6711 141.1 0 97 24 -variants_to_table_fields ", label=variants_to_table_fields, lp="6711,143", pos="e,7566.1,99.301 6631.2,186.54 6638.3,178.43 6648.7,165.59 6655.5,153 6660,144.71 6655.2,138.98 6662.5,133 6704.1,98.819 6728.8,120.32 \ 6782.5,116 6931.7,103.99 7376.7,100.35 7557.7,99.347"]; mutect_scatter_count -> detect_variants [_draw_="c 7 -#000000 B 10 6755.27 186.69 6755.38 173.19 6757.74 146.65 6773.5 133 6814.54 97.44 6840.37 120.41 6894.5 116 7021.41 105.66 \ 7394.96 101.15 7557.96 99.63 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7557.54 102.09 7564.51 99.57 7557.49 97.19 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6817.5 141.1 0 88 20 -mutect_scatter_count ", label=mutect_scatter_count, lp="6817.5,143", pos="e,7566,99.558 6755.3,186.69 6755.4,173.19 6757.7,146.65 6773.5,133 6814.5,97.441 6840.4,120.41 6894.5,116 7021.4,105.66 7395,101.15 \ 7558,99.632"]; bait_intervals -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 10 3384.83 186.54 3371.83 182.48 3357.02 176.97 3344.5 170 3338.98 166.93 3339.44 163.16 3333.5 161 3302.43 149.7 \ 2307.64 145.3 2018.55 144.26 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2018.73 141.81 2011.72 144.23 2018.71 146.71 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3372 163.6 0 55 14 -bait_intervals ", label=bait_intervals, lp="3372,165.5", pos="e,2010.2,144.23 3384.8,186.54 3371.8,182.48 3357,176.97 3344.5,170 3339,166.93 3339.4,163.16 3333.5,161 3302.4,149.7 2307.6,145.3 \ 2018.6,144.26"]; bait_intervals -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 7 3415.63 186.57 3413.42 178.67 3408.92 167.16 3400.5 161 3394.92 156.92 3383.76 153.78 3370.66 151.38 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3371.08 148.97 3363.77 150.23 3370.27 153.8 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3435 163.6 0 55 14 -bait_intervals ", label=bait_intervals, lp="3435,165.5", pos="e,3362.3,149.98 3415.6,186.57 3413.4,178.67 3408.9,167.16 3400.5,161 3394.9,156.92 3383.8,153.78 3370.7,151.38"]; cnvkit [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 4896 88.5 4896 107.5 4943 107.5 4943 88.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4919.5 95.5 0 31 6 -cnvkit ", height=0.27778, label=cnvkit, pos="4919.5,98", rects="4896,88.5,4943,107.5", width=0.65278]; bait_intervals -> cnvkit [_draw_="c 7 -#000000 B 7 3484.95 186.54 3548.07 178.88 3645.05 167.8 3729.5 161 4189.06 124.02 4750.31 104.44 4887.94 99.99 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4887.95 102.44 4894.87 99.77 4887.79 97.54 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4156 141.1 0 55 14 -bait_intervals ", label=bait_intervals, lp="4156,143", pos="e,4896.4,99.718 3485,186.54 3548.1,178.88 3645,167.8 3729.5,161 4189.1,124.02 4750.3,104.44 4887.9,99.989"]; variants_to_table_genotype_fields -> detect_variants [_draw_="c 7 -#000000 B 7 6898.89 186.63 6880.24 174.19 6850.86 150.39 6867.5 133 6891.09 108.34 7367.46 101.38 7557.86 99.58 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7557.67 102.03 7564.65 99.52 7557.62 97.13 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6937 141.1 0 139 33 -variants_to_table_genotype_fields ", label=variants_to_table_genotype_fields, lp="6937,143", pos="e,7566.2,99.502 6898.9,186.63 6880.2,174.19 6850.9,150.39 6867.5,133 6891.1,108.34 7367.5,101.38 7557.9,99.579"]; tumor_bam_to_cram [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2996.5 88.5 2996.5 107.5 3136.5 107.5 3136.5 88.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3066.5 95.5 0 124 22 -BAM to CRAM conversion ", height=0.27778, label="BAM to CRAM conversion", pos="3066.5,98", rects="2996.5,88.5,3136.5,107.5", width=1.9444]; reference -> tumor_bam_to_cram [_draw_="c 7 -#000000 B 13 4857.49 186.68 4846.03 179.2 4830.18 167.22 4820.5 153 4810.77 138.71 4822.46 126.2 4808.5 116 4800.28 109.99 \ 3351.69 108.19 3341.5 108 3275.06 106.73 3199.63 104.18 3144.59 102.12 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3144.88 99.68 3137.79 101.87 3144.69 104.58 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4840.5 141.1 0 40 9 -reference ", label=reference, lp="4840.5,143", pos="e,3136.3,101.81 4857.5,186.68 4846,179.2 4830.2,167.22 4820.5,153 4810.8,138.71 4822.5,126.2 4808.5,116 4800.3,109.99 3351.7,108.19 \ 3341.5,108 3275.1,106.73 3199.6,104.18 3144.6,102.12"]; reference -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 16 4808.6 186.51 4783.7 183.41 4754.79 180.15 4728.5 178 4649.13 171.52 4628.89 176.29 4549.5 170 4514.27 167.21 \ 4505.77 163.12 4470.5 161 4331.86 152.68 3359.39 153.93 3220.5 153 2765.1 149.94 2218.55 146.01 2018.62 144.57 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2018.75 142.12 2011.74 144.52 2018.72 147.02 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4569.5 163.6 0 40 9 -reference ", label=reference, lp="4569.5,165.5", pos="e,2010.2,144.51 4808.6,186.51 4783.7,183.41 4754.8,180.15 4728.5,178 4649.1,171.52 4628.9,176.29 4549.5,170 4514.3,167.21 4505.8,\ 163.12 4470.5,161 4331.9,152.68 3359.4,153.93 3220.5,153 2765.1,149.94 2218.6,146.01 2018.6,144.57"]; normal_bam_to_cram [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3343.5 88.5 3343.5 107.5 3483.5 107.5 3483.5 88.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3413.5 95.5 0 124 22 -BAM to CRAM conversion ", height=0.27778, label="BAM to CRAM conversion", pos="3413.5,98", rects="3343.5,88.5,3483.5,107.5", width=1.9444]; reference -> normal_bam_to_cram [_draw_="c 7 -#000000 B 10 4839.1 186.5 4818.02 179.84 4790.79 168.98 4770.5 153 4754.51 140.4 4761.59 125.34 4743.5 116 4715.56 101.58 3772.03 \ 99.39 3491.44 99.06 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3491.85 96.61 3484.85 99.05 3491.84 101.51 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4790.5 141.1 0 40 9 -reference ", label=reference, lp="4790.5,143", pos="e,3483.3,99.05 4839.1,186.5 4818,179.84 4790.8,168.98 4770.5,153 4754.5,140.4 4761.6,125.34 4743.5,116 4715.6,101.58 3772,99.39 \ 3491.4,99.059"]; reference -> detect_variants [_draw_="c 7 -#000000 B 19 4934.84 186.54 4959.92 183.45 4989.03 180.18 5015.5 178 5176.91 164.72 5217.6 165.18 5379.5 161 5559.89 156.35 \ 6823.44 164.87 7003.5 153 7073.69 148.37 7090.61 140.97 7160.5 133 7235.5 124.45 7254.24 121.87 7329.5 116 7407.17 109.94 7496.1 \ 105.25 7558 102.35 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7557.78 104.81 7564.66 102.04 7557.55 99.91 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7180.5 141.1 0 40 9 -reference ", label=reference, lp="7180.5,143", pos="e,7566.2,101.97 4934.8,186.54 4959.9,183.45 4989,180.18 5015.5,178 5176.9,164.72 5217.6,165.18 5379.5,161 5559.9,156.35 6823.4,164.87 \ 7003.5,153 7073.7,148.37 7090.6,140.97 7160.5,133 7235.5,124.45 7254.2,121.87 7329.5,116 7407.2,109.94 7496.1,105.25 7558,102.35"]; reference -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 10 4816.48 186.51 4759.96 178.21 4669.33 166.11 4590.5 161 4396.9 148.44 3911.49 155.94 3717.5 153 3596.45 151.16 \ 3456.03 147.99 3370.77 145.94 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3371.01 143.49 3363.95 145.77 3370.89 148.39 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4702.5 163.6 0 40 9 -reference ", label=reference, lp="4702.5,165.5", pos="e,3362.4,145.74 4816.5,186.51 4760,178.21 4669.3,166.11 4590.5,161 4396.9,148.44 3911.5,155.94 3717.5,153 3596.5,151.16 3456,147.99 \ 3370.8,145.94"]; reference -> cnvkit [_draw_="c 7 -#000000 B 7 4882.62 186.65 4891.94 178.98 4904.79 166.75 4911.5 153 4917.22 141.29 4919.1 126.58 4919.62 115.47 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4922.06 115.69 4919.76 108.65 4917.17 115.59 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4937.5 141.1 0 40 9 -reference ", label=reference, lp="4937.5,143", pos="e,4919.8,107.13 4882.6,186.65 4891.9,178.98 4904.8,166.75 4911.5,153 4917.2,141.29 4919.1,126.58 4919.6,115.47"]; concordance [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 5056.5 88.5 5056.5 107.5 5346.5 107.5 5346.5 88.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5201.5 95.5 0 274 49 -Concordance checking between Tumor and Normal BAM ", height=0.27778, label="Concordance checking between Tumor and Normal BAM", pos="5201.5,98", rects="5056.5,88.5,5346.5,107.5", width=4.0278]; reference -> concordance [_draw_="c 7 -#000000 B 4 4900.5 186.56 4960.53 169.1 5098.33 129.01 5164.59 109.74 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5165.2 112.11 5171.23 107.8 5163.83 107.41 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5099.5 141.1 0 40 9 -reference ", label=reference, lp="5099.5,143", pos="e,5172.7,107.38 4900.5,186.56 4960.5,169.1 5098.3,129.01 5164.6,109.74"]; reference -> manta [_draw_="c 7 -#000000 B 7 4868.19 186.85 4863.41 173.59 4856.57 147.38 4870.5 133 4887.89 115.05 5624.39 103.44 5871.57 100.04 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5871.32 102.49 5878.29 99.95 5871.25 97.59 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4890.5 141.1 0 40 9 -reference ", label=reference, lp="4890.5,143", pos="e,5879.8,99.926 4868.2,186.85 4863.4,173.59 4856.6,147.38 4870.5,133 4887.9,115.05 5624.4,103.44 5871.6,100.04"]; varscan_min_coverage -> detect_variants [_draw_="c 7 -#000000 B 7 7096.76 186.54 7135.11 172.95 7214.28 146.43 7283.5 133 7376.94 114.87 7486.29 106.23 7558.02 102.23 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7557.78 104.7 7564.63 101.87 7557.51 99.81 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7330.5 141.1 0 94 20 -varscan_min_coverage ", label=varscan_min_coverage, lp="7330.5,143", pos="e,7566.1,101.79 7096.8,186.54 7135.1,172.95 7214.3,146.43 7283.5,133 7376.9,114.87 7486.3,106.23 7558,102.23"]; tumor_name -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 7 675.49 186.5 702.12 183.51 732.67 180.32 760.5 178 1174.56 143.41 1672.85 142.28 1862.28 143.31 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1862 145.76 1869.01 143.35 1862.03 140.86 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1008.5 163.6 0 46 10 -final_name ", label=final_name, lp="1008.5,165.5", pos="e,1870.5,143.36 675.49,186.5 702.12,183.51 732.67,180.32 760.5,178 1174.6,143.41 1672.9,142.28 1862.3,143.31"]; tumor_sample_name -> detect_variants [_draw_="c 7 -#000000 B 7 7233.02 186.57 7243.6 183.73 7255.54 180.63 7266.5 178 7379.68 150.87 7513.48 123.35 7584.77 109.05 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7584.87 111.53 7591.25 107.75 7583.9 106.72 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7509 141.1 0 85 17 -tumor_sample_name ", label=tumor_sample_name, lp="7509,143", pos="e,7592.7,107.45 7233,186.57 7243.6,183.73 7255.5,180.63 7266.5,178 7379.7,150.87 7513.5,123.35 7584.8,109.05"]; varscan_max_normal_freq -> detect_variants [_draw_="c 7 -#000000 B 4 7686.73 186.82 7677.39 170.81 7656.59 135.15 7644.56 114.53 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7646.83 113.56 7641.18 108.75 7642.6 116.03 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7718.5 141.1 0 106 23 -varscan_max_normal_freq ", label=varscan_max_normal_freq, lp="7718.5,143", pos="e,7640.4,107.44 7686.7,186.82 7677.4,170.81 7656.6,135.15 7644.6,114.53"]; filter_docm_variants -> detect_variants [_draw_="c 7 -#000000 B 7 7821.68 186.73 7813.39 173.3 7795.15 146.85 7772.5 133 7754.32 121.88 7732.68 114.4 7712.04 109.36 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7712.72 107 7705.35 107.81 7711.62 111.77 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7836.5 141.1 0 82 20 -filter_docm_variants ", label=filter_docm_variants, lp="7836.5,143", pos="e,7703.9,107.47 7821.7,186.73 7813.4,173.3 7795.2,146.85 7772.5,133 7754.3,121.88 7732.7,114.4 7712,109.36"]; annotate_coding_only -> detect_variants [_draw_="c 7 -#000000 B 7 7943.94 186.91 7932.34 173.23 7906.75 145.79 7878.5 133 7849.73 119.98 7772.76 110.64 7713.09 105.08 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7713.49 102.65 7706.3 104.46 7713.04 107.53 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 7954 141.1 0 91 20 -annotate_coding_only ", label=annotate_coding_only, lp="7954,143", pos="e,7704.8,104.32 7943.9,186.91 7932.3,173.23 7906.8,145.79 7878.5,133 7849.7,119.98 7772.8,110.64 7713.1,105.08"]; varscan_min_var_freq -> detect_variants [_draw_="c 7 -#000000 B 7 8072.17 186.8 8059.25 172.95 8030.9 145.26 8000.5 133 7950.13 112.68 7804.69 104.34 7713.33 101.04 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7713.53 98.6 7706.45 100.8 7713.36 103.49 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8078.5 141.1 0 88 20 -varscan_min_var_freq ", label=varscan_min_var_freq, lp="8078.5,143", pos="e,7704.9,100.75 8072.2,186.8 8059.3,172.95 8030.9,145.26 8000.5,133 7950.1,112.68 7804.7,104.34 7713.3,101.04"]; pindel_insert_size -> detect_variants [_draw_="c 7 -#000000 B 7 8191.64 186.79 8179.52 172.92 8152.82 145.21 8123.5 133 8051.53 103.02 7831.8 98.56 7713.26 98.43 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7713.42 95.98 7706.42 98.43 7713.42 100.88 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8192 141.1 0 73 18 -pindel_insert_size ", label=pindel_insert_size, lp="8192,143", pos="e,7704.9,98.425 8191.6,186.79 8179.5,172.92 8152.8,145.21 8123.5,133 8051.5,103.02 7831.8,98.557 7713.3,98.427"]; picard_metric_accumulation_level -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 7 1867.49 186.59 1872.44 178.92 1880.69 167.78 1890.5 161 1893.34 159.04 1896.43 157.28 1899.63 155.72 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1900.42 158.05 1905.86 153.01 1898.46 153.56 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1959.5 163.6 0 138 32 -picard_metric_accumulation_level ", label=picard_metric_accumulation_level, lp="1959.5,165.5", pos="e,1907.2,152.4 1867.5,186.59 1872.4,178.92 1880.7,167.78 1890.5,161 1893.3,159.04 1896.4,157.28 1899.6,155.72"]; picard_metric_accumulation_level -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 13 1907.35 186.52 1923.45 183.62 1941.76 180.48 1958.5 178 1988.17 173.61 1998.92 183.89 2025.5 170 2030.24 167.52 \ 2028.63 163.23 2033.5 161 2060.43 148.69 2944.33 145.04 3214.7 144.21 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3214.4 146.66 3221.4 144.19 3214.39 141.76 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2102.5 163.6 0 138 32 -picard_metric_accumulation_level ", label=picard_metric_accumulation_level, lp="2102.5,165.5", pos="e,3222.9,144.18 1907.3,186.52 1923.4,183.62 1941.8,180.48 1958.5,178 1988.2,173.61 1998.9,183.89 2025.5,170 2030.2,167.52 2028.6,\ 163.23 2033.5,161 2060.4,148.69 2944.3,145.04 3214.7,144.21"]; manta_non_wgs -> manta [_draw_="c 7 -#000000 B 4 5951.5 186.82 5951.5 171.17 5951.5 136.71 5951.5 115.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5953.95 115.95 5951.5 108.95 5949.05 115.95 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5970 141.1 0 37 7 -non_wgs ", label=non_wgs, lp="5970,143", pos="e,5951.5,107.44 5951.5,186.82 5951.5,171.17 5951.5,136.71 5951.5,115.91"]; somalier_vcf -> concordance [_draw_="c 7 -#000000 B 4 5413.32 186.65 5371.84 169.49 5276.94 130.22 5229.53 110.6 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5230.6 108.39 5223.2 107.98 5228.73 112.92 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5335 141.1 0 13 3 -vcf ", label=vcf, lp="5335,143", pos="e,5221.8,107.4 5413.3,186.65 5371.8,169.49 5276.9,130.22 5229.5,110.6"]; strelka_cpu_reserved -> detect_variants [_draw_="c 7 -#000000 B 7 8306.47 186.84 8292.34 173.07 8261.49 145.48 8229.5 133 8182.66 114.73 7863.5 104.58 7713.32 100.77 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7713.56 98.33 7706.5 100.6 7713.44 103.23 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8309 141.1 0 87 20 -strelka_cpu_reserved ", label=strelka_cpu_reserved, lp="8309,143", pos="e,7705,100.56 8306.5,186.84 8292.3,173.07 8261.5,145.48 8229.5,133 8182.7,114.73 7863.5,104.58 7713.3,100.77"]; bqsr_intervals -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 7 2176.73 186.79 2178.28 179.05 2179.06 167.65 2172.5 161 2161.71 150.06 2081.78 146.12 2018.71 144.72 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2018.89 142.27 2011.84 144.58 2018.79 147.17 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2205.5 163.6 0 58 14 -bqsr_intervals ", label=bqsr_intervals, lp="2205.5,165.5", pos="e,2010.3,144.55 2176.7,186.79 2178.3,179.05 2179.1,167.65 2172.5,161 2161.7,150.06 2081.8,146.12 2018.7,144.72"]; bqsr_intervals -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 7 2194.88 186.64 2217.69 177.45 2253.3 163.64 2267.5 161 2359.39 143.94 2990.55 143.43 3214.16 143.8 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3214.07 146.25 3221.07 143.81 3214.08 141.35 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2296.5 163.6 0 58 14 -bqsr_intervals ", label=bqsr_intervals, lp="2296.5,165.5", pos="e,3222.6,143.81 2194.9,186.64 2217.7,177.45 2253.3,163.64 2267.5,161 2359.4,143.94 2990.5,143.43 3214.2,143.8"]; vep_ensembl_assembly -> detect_variants [_draw_="c 7 -#000000 B 7 8436.71 186.73 8421.27 172.79 8387.68 144.96 8353.5 133 8294.4 112.31 7886.61 103.16 7713.23 100.18 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7713.46 97.73 7706.42 100.06 7713.37 102.63 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8440 141.1 0 97 20 -vep_ensembl_assembly ", label=vep_ensembl_assembly, lp="8440,143", pos="e,7704.9,100.04 8436.7,186.73 8421.3,172.79 8387.7,144.96 8353.5,133 8294.4,112.31 7886.6,103.16 7713.2,100.18"]; normal_sample_name -> detect_variants [_draw_="c 7 -#000000 B 7 8570.94 186.71 8555.91 172.73 8523.14 144.85 8489.5 133 8417.54 107.65 7909.99 101.09 7713.2 99.49 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7713.45 97.04 7706.43 99.43 7713.41 101.94 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8572.5 141.1 0 90 18 -normal_sample_name ", label=normal_sample_name, lp="8572.5,143", pos="e,7704.9,99.421 8570.9,186.71 8555.9,172.73 8523.1,144.85 8489.5,133 8417.5,107.65 7910,101.09 7713.2,99.487"]; vep_to_table_fields -> detect_variants [_draw_="c 7 -#000000 B 10 8693.74 186.72 8680.07 172.77 8650.14 144.92 8618.5 133 8528.8 99.21 8499.23 120.84 8403.5 116 8151.38 103.25 \ 7852.22 100.06 7713.42 99.26 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7713.44 96.81 7706.43 99.23 7713.41 101.71 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8693 141.1 0 79 19 -vep_to_table_fields ", label=vep_to_table_fields, lp="8693,143", pos="e,7704.9,99.218 8693.7,186.72 8680.1,172.77 8650.1,144.92 8618.5,133 8528.8,99.212 8499.2,120.84 8403.5,116 8151.4,103.25 7852.2,\ 100.06 7713.4,99.265"]; per_target_intervals -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 7 2426.96 186.54 2402.01 178.36 2362.07 166.44 2326.5 161 2269.3 152.25 2113.85 147.57 2018.59 145.45 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2018.69 143 2011.64 145.3 2018.59 147.9 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2408.5 163.6 0 82 20 -per_target_intervals ", label=per_target_intervals, lp="2408.5,165.5", pos="e,2010.1,145.27 2427,186.54 2402,178.36 2362.1,166.44 2326.5,161 2269.3,152.25 2113.9,147.57 2018.6,145.45"]; per_target_intervals -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 7 2452.12 186.7 2453.22 178.64 2456.23 166.82 2464.5 161 2479.71 150.3 3011.09 145.79 3214.43 144.46 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3214.2 146.91 3221.18 144.41 3214.17 142.01 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2505.5 163.6 0 82 20 -per_target_intervals ", label=per_target_intervals, lp="2505.5,165.5", pos="e,3222.7,144.4 2452.1,186.7 2453.2,178.64 2456.2,166.82 2464.5,161 2479.7,150.3 3011.1,145.79 3214.4,144.46"]; varscan_strand_filter -> detect_variants [_draw_="c 7 -#000000 B 10 8812.29 186.7 8797.84 172.72 8766.3 144.83 8733.5 133 8636.24 97.92 8604.78 120.79 8501.5 116 8210.88 102.51 7864.92 \ 99.7 7713.25 99.13 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7713.38 96.68 7706.37 99.11 7713.36 101.58 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8813 141.1 0 85 21 -varscan_strand_filter ", label=varscan_strand_filter, lp="8813,143", pos="e,7704.9,99.103 8812.3,186.7 8797.8,172.72 8766.3,144.83 8733.5,133 8636.2,97.922 8604.8,120.79 8501.5,116 8210.9,102.51 7864.9,\ 99.7 7713.3,99.133"]; vep_ensembl_version -> detect_variants [_draw_="c 7 -#000000 B 10 8937.07 186.69 8922.24 172.68 8889.89 144.75 8856.5 133 8752.29 96.32 8718.88 120.74 8608.5 116 8275.48 101.69 \ 7877.85 99.34 7713 99.01 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7713.37 96.56 7706.36 99 7713.36 101.46 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 8937.5 141.1 0 88 19 -vep_ensembl_version ", label=vep_ensembl_version, lp="8937.5,143", pos="e,7704.8,98.999 8937.1,186.69 8922.2,172.68 8889.9,144.75 8856.5,133 8752.3,96.317 8718.9,120.74 8608.5,116 8275.5,101.69 7877.9,\ 99.338 7713,99.014"]; qc_minimum_mapping_quality -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 7 2587.98 186.73 2578.83 178.46 2563.44 166.23 2547.5 161 2498.63 144.95 2171.42 143.49 2018.72 143.7 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2018.76 141.25 2011.76 143.72 2018.76 146.15 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2626 163.6 0 123 26 -qc_minimum_mapping_quality ", label=qc_minimum_mapping_quality, lp="2626,165.5", pos="e,2010.2,143.72 2588,186.73 2578.8,178.46 2563.4,166.23 2547.5,161 2498.6,144.95 2171.4,143.49 2018.7,143.7"]; qc_minimum_mapping_quality -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 7 2627.69 186.54 2659.36 178.37 2709.94 166.45 2754.5 161 2841.07 150.41 3087.4 146.22 3214.51 144.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3214.22 147.19 3221.19 144.66 3214.16 142.29 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2816 163.6 0 123 26 -qc_minimum_mapping_quality ", label=qc_minimum_mapping_quality, lp="2816,165.5", pos="e,3222.7,144.64 2627.7,186.54 2659.4,178.37 2709.9,166.45 2754.5,161 2841.1,150.41 3087.4,146.22 3214.5,144.73"]; vep_custom_annotations -> detect_variants [_draw_="c 7 -#000000 B 10 9071.05 186.68 9054.47 172.66 9018.49 144.72 8982.5 133 8872.38 97.16 8838.21 120.68 8722.5 116 8344.26 100.69 \ 7891.48 98.93 7713.13 98.89 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7713.36 96.44 7706.36 98.89 7713.35 101.34 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9075 141.1 0 103 22 -vep_custom_annotations ", label=vep_custom_annotations, lp="9075,143", pos="e,7704.8,98.891 9071,186.68 9054.5,172.66 9018.5,144.72 8982.5,133 8872.4,97.157 8838.2,120.68 8722.5,116 8344.3,100.69 7891.5,98.933 \ 7713.1,98.892"]; docm_vcf -> detect_variants [_draw_="c 7 -#000000 B 10 9181.59 186.69 9172.78 172.69 9152.83 144.77 9127.5 133 9012.42 79.54 8969.31 120.67 8842.5 116 8416.37 100.3 \ 7905.12 98.82 7713.27 98.87 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7713.44 96.42 7706.44 98.87 7713.44 101.32 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9174 141.1 0 39 8 -docm_vcf ", label=docm_vcf, lp="9174,143", pos="e,7704.9,98.874 9181.6,186.69 9172.8,172.69 9152.8,144.77 9127.5,133 9012.4,79.54 8969.3,120.67 8842.5,116 8416.4,100.3 7905.1,98.817 \ 7713.3,98.87"]; tumor_sequence -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 7 1409.43 186.51 1461.76 178.73 1542.82 167.47 1613.5 161 1698.33 153.24 1795.88 148.74 1862.2 146.34 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1862.12 148.8 1869.03 146.1 1861.94 143.9 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1634 163.6 0 41 8 -sequence ", label=sequence, lp="1634,165.5", pos="e,1870.5,146.05 1409.4,186.51 1461.8,178.73 1542.8,167.47 1613.5,161 1698.3,153.24 1795.9,148.74 1862.2,146.34"]; summary_intervals -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 7 3033.23 186.53 3011.19 178.22 2975.55 166.08 2943.5 161 2853.38 146.73 2238.73 144.43 2018.66 144.07 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2018.89 141.62 2011.89 144.06 2018.88 146.52 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3019 163.6 0 77 17 -summary_intervals ", label=summary_intervals, lp="3019,165.5", pos="e,2010.4,144.05 3033.2,186.53 3011.2,178.22 2975.5,166.08 2943.5,161 2853.4,146.73 2238.7,144.43 2018.7,144.07"]; summary_intervals -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 7 3057.15 186.68 3060.19 178.62 3066.02 166.78 3075.5 161 3087.34 153.78 3156.94 149.25 3214.17 146.7 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3214.12 149.15 3221.01 146.4 3213.91 144.26 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3114 163.6 0 77 17 -summary_intervals ", label=summary_intervals, lp="3114,165.5", pos="e,3222.5,146.34 3057.1,186.68 3060.2,178.62 3066,166.78 3075.5,161 3087.3,153.78 3156.9,149.25 3214.2,146.7"]; per_base_intervals -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 7 3165.04 186.74 3161.04 177.64 3154.38 163.91 3149.5 161 3125.18 146.5 2282.89 144.37 2018.84 144.05 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2018.96 141.6 2011.96 144.05 2018.96 146.5 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3194 163.6 0 77 18 -per_base_intervals ", label=per_base_intervals, lp="3194,165.5", pos="e,2010.4,144.04 3165,186.74 3161,177.64 3154.4,163.91 3149.5,161 3125.2,146.5 2282.9,144.37 2018.8,144.05"]; per_base_intervals -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 7 3192.22 186.61 3205.11 181.94 3221.28 175.89 3235.5 170 3246.05 165.63 3257.52 160.48 3267.4 155.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3268.24 158.22 3273.55 153.05 3266.17 153.78 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3294 163.6 0 77 18 -per_base_intervals ", label=per_base_intervals, lp="3294,165.5", pos="e,3274.9,152.41 3192.2,186.61 3205.1,181.94 3221.3,175.89 3235.5,170 3246,165.63 3257.5,160.48 3267.4,155.91"]; known_variants -> detect_variants [_draw_="c 7 -#000000 B 10 9262.67 186.72 9250.59 172.77 9223.94 144.92 9194.5 133 9105.66 97.01 9075.25 120.39 8979.5 116 8730.43 104.59 \ 7960.66 100.38 7713.06 99.3 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7713.35 96.86 7706.34 99.28 7713.33 101.76 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9258.5 141.1 0 64 14 -known_variants ", label=known_variants, lp="9258.5,143", pos="e,7704.8,99.269 9262.7,186.72 9250.6,172.77 9223.9,144.92 9194.5,133 9105.7,97.015 9075.3,120.39 8979.5,116 8730.4,104.59 7960.7,\ 100.38 7713.1,99.305"]; manta_call_regions -> manta [_draw_="c 7 -#000000 B 7 5850.13 186.83 5860.4 174.42 5881.12 150.44 5901.5 133 5910.44 125.35 5921.13 117.88 5930.33 111.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5931.45 114.09 5936.05 108.27 5928.82 109.96 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5926 141.1 0 49 12 -call_regions ", label=call_regions, lp="5926,143", pos="e,5937.3,107.46 5850.1,186.83 5860.4,174.42 5881.1,150.44 5901.5,133 5910.4,125.35 5921.1,117.88 5930.3,111.91"]; cle_vcf_filter -> detect_variants [_draw_="c 7 -#000000 B 10 9570.52 186.54 9563.14 183.5 9554.53 180.27 9546.5 178 9345.02 121.03 9288.66 125.61 9079.5 116 8809.91 103.62 \ 7972.52 100.04 7712.99 99.21 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7713.27 96.76 7706.26 99.19 7713.25 101.66 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 9471 141.1 0 51 14 -cle_vcf_filter ", label=cle_vcf_filter, lp="9471,143", pos="e,7704.7,99.188 9570.5,186.54 9563.1,183.5 9554.5,180.27 9546.5,178 9345,121.03 9288.7,125.61 9079.5,116 8809.9,103.62 7972.5,100.04 \ 7713,99.214"]; vep_ensembl_species -> detect_variants [_draw_="c 7 -#000000 B 10 6069.03 186.88 6075.46 173.16 6090.49 145.66 6112.5 133 6166.45 101.97 6189.4 120.17 6251.5 116 6508.42 98.76 \ 7305.15 98.47 7557.8 98.83 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7557.68 101.28 7564.69 98.84 7557.69 96.38 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6157.5 141.1 0 90 19 -vep_ensembl_species ", label=vep_ensembl_species, lp="6157.5,143", pos="e,7566.2,98.847 6069,186.88 6075.5,173.16 6090.5,145.66 6112.5,133 6166.5,101.97 6189.4,120.17 6251.5,116 6508.4,98.763 7305.2,98.472 \ 7557.8,98.834"]; vep_pick -> detect_variants [_draw_="c 7 -#000000 B 10 6168.68 186.73 6180.83 173.29 6206.84 146.83 6234.5 133 6265.07 117.72 6275.56 120.02 6309.5 116 6432.98 101.38 \ 7292.31 99.33 7557.65 99.04 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7557.57 101.49 7564.57 99.04 7557.56 96.59 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6252.5 141.1 0 36 8 -vep_pick ", label=vep_pick, lp="6252.5,143", pos="e,7566.1,99.036 6168.7,186.73 6180.8,173.29 6206.8,146.83 6234.5,133 6265.1,117.72 6275.6,120.02 6309.5,116 6433,101.38 7292.3,99.329 \ 7557.6,99.045"]; varscan_p_value -> detect_variants [_draw_="c 7 -#000000 B 10 6248.73 186.61 6256.07 173 6272.49 146.3 6294.5 133 6327.84 112.85 6341.75 120.06 6380.5 116 6496.88 103.81 7301.59 \ 100.11 7557.53 99.23 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7557.53 101.68 7564.52 99.21 7557.51 96.78 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6328.5 141.1 0 68 15 -varscan_p_value ", label=varscan_p_value, lp="6328.5,143", pos="e,7566,99.203 6248.7,186.61 6256.1,173 6272.5,146.3 6294.5,133 6327.8,112.85 6341.8,120.06 6380.5,116 6496.9,103.81 7301.6,100.11 \ 7557.5,99.232"]; target_intervals -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 7 3743.44 186.5 3673.12 178.27 3560.91 166.28 3463.5 161 3178 145.53 2288.01 144.06 2018.57 143.98 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2018.91 141.53 2011.91 143.98 2018.91 146.43 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3610.5 163.6 0 64 16 -target_intervals ", label=target_intervals, lp="3610.5,165.5", pos="e,2010.4,143.98 3743.4,186.5 3673.1,178.27 3560.9,166.28 3463.5,161 3178,145.53 2288,144.06 2018.6,143.98"]; target_intervals -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 7 3812.87 186.51 3812.71 178.55 3811.05 167.01 3803.5 161 3795.17 154.36 3511.75 148.12 3370.67 145.41 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3370.97 142.97 3363.93 145.28 3370.88 147.86 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3841.5 163.6 0 64 16 -target_intervals ", label=target_intervals, lp="3841.5,165.5", pos="e,3362.4,145.25 3812.9,186.51 3812.7,178.55 3811,167.01 3803.5,161 3795.2,154.36 3511.8,148.12 3370.7,145.41"]; known_indels -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 10 4108.12 186.51 4060.34 181.9 4000.71 175.93 3947.5 170 3915.01 166.38 3907.12 163.15 3874.5 161 3827.48 157.9 \ 2374.93 147.16 2018.76 144.57 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2018.83 142.12 2011.81 144.52 2018.8 147.02 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3975.5 163.6 0 56 12 -known_indels ", label=known_indels, lp="3975.5,165.5", pos="e,2010.3,144.5 4108.1,186.51 4060.3,181.9 4000.7,175.93 3947.5,170 3915,166.38 3907.1,163.15 3874.5,161 3827.5,157.9 2374.9,147.16 \ 2018.8,144.57"]; known_indels -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 7 4160.09 186.52 4121.11 178.32 4058.94 166.39 4004.5 161 3988.92 159.46 3552.34 149.72 3370.66 145.71 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3370.77 143.26 3363.71 145.56 3370.66 148.16 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4096.5 163.6 0 56 12 -known_indels ", label=known_indels, lp="4096.5,165.5", pos="e,3362.2,145.53 4160.1,186.52 4121.1,178.32 4058.9,166.39 4004.5,161 3988.9,159.46 3552.3,149.72 3370.7,145.71"]; dbsnp_vcf -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 7 4473.98 186.52 4387.59 178.01 4247.1 165.54 4125.5 161 4071.83 159 2402.45 147.23 2018.64 144.54 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2018.88 142.1 2011.87 144.5 2018.85 147 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4299.5 163.6 0 42 9 -dbsnp_vcf ", label=dbsnp_vcf, lp="4299.5,165.5", pos="e,2010.4,144.49 4474,186.52 4387.6,178.01 4247.1,165.54 4125.5,161 4071.8,159 2402.5,147.23 2018.6,144.54"]; dbsnp_vcf -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 10 4518.42 186.54 4480.11 178.24 4418.49 166.1 4364.5 161 4292.92 154.23 3789.38 154.21 3717.5 153 3596.46 150.97 \ 3456.03 147.85 3370.77 145.86 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3371.01 143.42 3363.95 145.71 3370.89 148.32 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4448.5 163.6 0 42 9 -dbsnp_vcf ", label=dbsnp_vcf, lp="4448.5,165.5", pos="e,3362.4,145.67 4518.4,186.54 4480.1,178.24 4418.5,166.1 4364.5,161 4292.9,154.23 3789.4,154.21 3717.5,153 3596.5,150.97 3456,147.85 \ 3370.8,145.86"]; normal_sequence -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 13 5113.63 186.54 5081.47 183.62 5044.87 180.47 5011.5 178 4883.63 168.54 4851.65 165.29 4723.5 161 4276.62 146.04 \ 4164.58 159.51 3717.5 153 3596.45 151.24 3456.03 148.04 3370.77 145.97 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3371.01 143.52 3363.95 145.8 3370.89 148.42 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4922 163.6 0 41 8 -sequence ", label=sequence, lp="4922,165.5", pos="e,3362.4,145.76 5113.6,186.54 5081.5,183.62 5044.9,180.47 5011.5,178 4883.6,168.54 4851.7,165.29 4723.5,161 4276.6,146.04 4164.6,\ 159.51 3717.5,153 3596.5,151.24 3456,148.04 3370.8,145.97"]; mills -> tumor_alignment_and_qc [_draw_="c 7 -#000000 B 7 980.93 186.58 1032.05 178.43 1113.53 166.53 1184.5 161 1314.26 150.89 1696.53 146.24 1862.32 144.66 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1862.04 147.11 1869.01 144.6 1861.99 142.21 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1194 163.6 0 19 5 -mills ", label=mills, lp="1194,165.5", pos="e,1870.5,144.58 980.93,186.58 1032.1,178.43 1113.5,166.53 1184.5,161 1314.3,150.89 1696.5,146.24 1862.3,144.66"]; mills -> normal_alignment_and_qc [_draw_="c 7 -#000000 B 13 1015 186.5 1043.43 183.71 1075.33 180.64 1104.5 178 1147.14 174.14 1158.67 179.11 1200.5 170 1212.04 167.49 1213.88 \ 163.08 1225.5 161 1237.97 158.77 2838.85 147.23 3214.33 144.56 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3214.21 147.01 3221.19 144.51 3214.18 142.11 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1235 163.6 0 19 5 -mills ", label=mills, lp="1235,165.5", pos="e,3222.7,144.5 1015,186.5 1043.4,183.71 1075.3,180.64 1104.5,178 1147.1,174.14 1158.7,179.11 1200.5,170 1212,167.49 1213.9,163.08 \ 1225.5,161 1238,158.77 2838.9,147.23 3214.3,144.56"]; normal_index_cram [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 123 35.5 123 54.5 242 54.5 242 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 182.5 42.5 0 103 19 -samtools index cram ", height=0.27778, label="samtools index cram", pos="182.5,45", rects="123,35.5,242,54.5", width=1.6528]; normal_index_cram -> normal_cram [_draw_="c 7 -#000000 B 10 198.58 54.42 212.16 61.8 232.41 71.47 251.5 75.5 303.37 86.45 4017.74 90.8 4068.5 75.5 4079.25 72.26 4089.8 65.59 \ 4098.08 59.32 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4099.33 61.45 4103.27 55.17 4096.27 57.63 ", pos="e,4104.4,54.224 198.58,54.418 212.16,61.797 232.41,71.468 251.5,75.5 303.37,86.453 4017.7,90.799 4068.5,75.5 4079.3,72.26 4089.8,\ 65.595 4098.1,59.319"]; tumor_index_cram [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 0 35.5 0 54.5 119 54.5 119 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 59.5 42.5 0 103 19 -samtools index cram ", height=0.27778, label="samtools index cram", pos="59.5,45", rects="0,35.5,119,54.5", width=1.6528]; tumor_bam_to_cram -> tumor_index_cram [_draw_="c 7 -#000000 B 7 2996.55 96.69 2564.19 94.72 269.21 83.31 122.5 63 112.78 61.65 102.42 59.27 92.98 56.71 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 93.8 54.4 86.4 54.85 92.47 59.11 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 767 73.6 0 21 4 -cram ", label=cram, lp="767,75.5", pos="e,84.945,54.434 2996.6,96.691 2564.2,94.717 269.21,83.31 122.5,63 112.78,61.654 102.42,59.273 92.976,56.711"]; tumor_index_cram -> tumor_cram [_draw_="c 7 -#000000 B 10 74.57 54.41 87.33 61.79 106.37 71.46 124.5 75.5 164.44 84.4 3031.45 87.71 3070.5 75.5 3080.9 72.25 3090.99 65.58 \ 3098.89 59.31 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3100.01 61.57 3103.8 55.19 3096.86 57.81 ", pos="e,3105,54.217 74.573,54.412 87.327,61.789 106.37,71.458 124.5,75.5 164.44,84.404 3031.4,87.712 3070.5,75.5 3080.9,72.249 3091,65.583 \ 3098.9,59.31"]; tumor_alignment_and_qc -> tumor_per_base_hs_metrics [_draw_="c 7 -#000000 B 13 1870.52 138.08 1811.57 134.74 1725.01 129.73 1649.5 125 1536.58 117.92 1507.7 122.53 1395.5 108 1290.9 94.45 1265.89 \ 83.83 1162.5 63 1151.72 60.83 1140.16 58.44 1129.23 56.15 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1129.86 53.78 1122.51 54.74 1128.85 58.58 ", pos="e,1121,54.428 1870.5,138.08 1811.6,134.74 1725,129.73 1649.5,125 1536.6,117.92 1507.7,122.53 1395.5,108 1290.9,94.452 1265.9,83.832 \ 1162.5,63 1151.7,60.829 1140.2,58.437 1129.2,56.151"]; tumor_alignment_and_qc -> tumor_hs_metrics [_draw_="c 7 -#000000 B 10 1870.85 135.78 1835.41 132.59 1791.66 128.63 1752.5 125 1537.43 105.06 1481.23 110.36 1270.5 63 1263 61.31 1255.05 \ 59.14 1247.56 56.92 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1248.52 54.65 1241.1 54.94 1247.08 59.33 ", pos="e,1239.7,54.499 1870.9,135.78 1835.4,132.59 1791.7,128.63 1752.5,125 1537.4,105.06 1481.2,110.36 1270.5,63 1263,61.315 1255,59.141 \ 1247.6,56.915"]; tumor_alignment_and_qc -> tumor_verify_bam_id_metrics [_draw_="c 7 -#000000 B 10 1876.74 133.52 1828.12 126.93 1759.51 117.37 1699.5 108 1582.33 89.71 1553.1 84.63 1436.5 63 1424.95 60.86 1412.54 \ 58.44 1400.87 56.12 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1401.36 53.72 1394.01 54.74 1400.39 58.52 ", pos="e,1392.5,54.446 1876.7,133.52 1828.1,126.93 1759.5,117.37 1699.5,108 1582.3,89.715 1553.1,84.631 1436.5,63 1425,60.857 1412.5,58.441 \ 1400.9,56.117"]; tumor_alignment_and_qc -> tumor_mark_duplicates_metrics [_draw_="c 7 -#000000 B 7 1900.96 133.51 1869.62 126.74 1824.72 116.94 1785.5 108 1708.07 90.35 1618.01 68.81 1566.19 56.33 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1567.06 54.02 1559.68 54.76 1565.91 58.78 ", pos="e,1558.2,54.405 1901,133.51 1869.6,126.74 1824.7,116.94 1785.5,108 1708.1,90.347 1618,68.815 1566.2,56.33"]; tumor_alignment_and_qc -> tumor_flagstats [_draw_="c 7 -#000000 B 4 1916.23 133.65 1865.94 116.34 1750.34 76.57 1693.81 57.12 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1694.76 54.85 1687.35 54.89 1693.17 59.49 ", pos="e,1685.9,54.4 1916.2,133.65 1865.9,116.34 1750.3,76.568 1693.8,57.118"]; tumor_alignment_and_qc -> tumor_insert_size_metrics [_draw_="c 7 -#000000 B 4 1927.02 133.65 1899.88 116.84 1838.51 78.83 1806.23 58.84 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1807.59 56.8 1800.35 55.2 1805.01 60.97 ", pos="e,1799.1,54.4 1927,133.65 1899.9,116.84 1838.5,78.831 1806.2,58.841"]; tumor_alignment_and_qc -> tumor_summary_hs_metrics [_draw_="c 7 -#000000 B 4 1940.5 133.82 1940.5 118.17 1940.5 83.71 1940.5 62.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1942.95 62.95 1940.5 55.95 1938.05 62.95 ", pos="e,1940.5,54.438 1940.5,133.82 1940.5,118.17 1940.5,83.71 1940.5,62.915"]; tumor_alignment_and_qc -> tumor_per_target_hs_metrics [_draw_="c 7 -#000000 B 4 1954.59 133.65 1983.08 116.77 2047.64 78.51 2081.26 58.59 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2082.25 60.85 2087.02 55.17 2079.75 56.63 ", pos="e,2088.3,54.4 1954.6,133.65 1983.1,116.77 2047.6,78.51 2081.3,58.589"]; tumor_alignment_and_qc -> tumor_per_base_coverage_metrics [_draw_="c 7 -#000000 B 13 1870.6 141.87 1720.78 141.33 1357.58 138.59 1053.5 125 945.79 120.19 918.81 118.45 811.5 108 650.58 92.33 610.42 \ 86.82 450.5 63 436.37 60.89 421.13 58.37 406.98 55.93 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 407.6 53.55 400.28 54.76 406.75 58.37 ", pos="e,398.79,54.497 1870.6,141.87 1720.8,141.33 1357.6,138.59 1053.5,125 945.79,120.19 918.81,118.45 811.5,108 650.58,92.329 610.42,\ 86.824 450.5,63 436.37,60.894 421.13,58.373 406.98,55.926"]; tumor_alignment_and_qc -> tumor_alignment_summary_metrics [_draw_="c 7 -#000000 B 10 1870.54 141.3 1742.63 139.81 1462.47 135.55 1226.5 125 1111.26 119.85 1082.25 119.84 967.5 108 836.54 94.48 683.87 \ 69.65 603.53 55.87 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 604.32 53.52 597.01 54.74 603.49 58.34 ", pos="e,595.51,54.486 1870.5,141.3 1742.6,139.81 1462.5,135.55 1226.5,125 1111.3,119.85 1082.2,119.84 967.5,108 836.54,94.484 683.87,69.647 \ 603.53,55.866"]; tumor_alignment_and_qc -> tumor_verify_bam_id_depth [_draw_="c 7 -#000000 B 10 1870.53 142.1 1731.66 141.62 1411.61 137.12 1144.5 108 993.84 91.58 955.87 88.58 806.5 63 794.99 61.03 782.62 \ 58.6 771.11 56.19 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 771.73 53.82 764.37 54.77 770.71 58.61 ", pos="e,762.89,54.455 1870.5,142.1 1731.7,141.62 1411.6,137.12 1144.5,108 993.84,91.578 955.87,88.582 806.5,63 794.99,61.029 782.62,58.596 \ 771.11,56.193"]; tumor_alignment_and_qc -> tumor_per_target_coverage_metrics [_draw_="c 7 -#000000 B 13 1870.62 140.62 1778.6 138.54 1611.8 133.86 1469.5 125 1384 119.68 1362.49 118.75 1277.5 108 1155.5 92.57 1125.8 \ 83.21 1004.5 63 990.64 60.69 975.72 58.19 961.71 55.83 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 962.38 53.46 955.08 54.72 961.57 58.29 ", pos="e,953.58,54.464 1870.6,140.62 1778.6,138.54 1611.8,133.86 1469.5,125 1384,119.68 1362.5,118.75 1277.5,108 1155.5,92.566 1125.8,83.205 \ 1004.5,63 990.64,60.692 975.72,58.19 961.71,55.833"]; tumor_alignment_and_qc -> tumor_bam_to_cram [_draw_="c 7 -#000000 B 7 1985.05 133.55 2021.91 126.71 2071.37 117.9 2091.5 116 2264.83 99.66 2788.97 98.6 2988.36 98.82 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2988.23 101.27 2995.24 98.83 2988.24 96.37 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2101 118.6 0 19 3 -bam ", label=bam, lp="2101,120.5", pos="e,2996.8,98.829 1985,133.55 2021.9,126.71 2071.4,117.9 2091.5,116 2264.8,99.664 2789,98.604 2988.4,98.819"]; tumor_alignment_and_qc -> detect_variants [_draw_="c 7 -#000000 B 10 2010.2 140.26 2210 135.36 2801.92 121.44 3293.5 116 4507.65 102.56 4811.28 113.17 6025.5 108 6614.64 105.49 7325.03 \ 101.01 7557.66 99.51 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7557.57 101.96 7564.55 99.46 7557.53 97.06 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3316.5 118.6 0 46 9 -tumor_bam ", label=tumor_bam, lp="3316.5,120.5", pos="e,7566.1,99.454 2010.2,140.26 2210,135.36 2801.9,121.44 3293.5,116 4507.7,102.56 4811.3,113.17 6025.5,108 6614.6,105.49 7325,101.01 \ 7557.7,99.509"]; tumor_alignment_and_qc -> cnvkit [_draw_="c 7 -#000000 B 13 2010.29 137.25 2040.35 134.6 2075.8 130.66 2107.5 125 2123.31 122.18 2126.57 118.06 2142.5 116 2216.49 106.41 \ 3410.89 108.46 3485.5 108 4048.09 104.56 4734.83 100.18 4888.17 99.2 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4887.79 101.65 4894.78 99.16 4887.76 96.75 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2165.5 118.6 0 46 9 -tumor_bam ", label=tumor_bam, lp="2165.5,120.5", pos="e,4896.3,99.148 2010.3,137.25 2040.3,134.6 2075.8,130.66 2107.5,125 2123.3,122.18 2126.6,118.06 2142.5,116 2216.5,106.41 3410.9,\ 108.46 3485.5,108 4048.1,104.56 4734.8,100.18 4888.2,99.2"]; tumor_alignment_and_qc -> concordance [_draw_="c 7 -#000000 B 13 2010.43 142.49 2059.85 141.55 2127.38 137.63 2185.5 125 2196.63 122.58 2198.29 118.05 2209.5 116 2246.88 109.17 \ 4907.51 108.72 4945.5 108 4978.84 107.37 5014.62 106.33 5048.54 105.18 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5048.23 107.65 5055.15 104.96 5048.07 102.75 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2223.5 118.6 0 28 5 -bam_1 ", label=bam_1, lp="2223.5,120.5", pos="e,5056.7,104.91 2010.4,142.49 2059.9,141.55 2127.4,137.63 2185.5,125 2196.6,122.58 2198.3,118.05 2209.5,116 2246.9,109.17 4907.5,\ 108.72 4945.5,108 4978.8,107.37 5014.6,106.33 5048.5,105.18"]; tumor_alignment_and_qc -> manta [_draw_="c 7 -#000000 B 13 2010.42 141.2 2083.73 139.78 2193.81 135.86 2234.5 125 2243.14 122.69 2243.8 118.07 2252.5 116 2294.34 106.07 \ 5305.5 108.38 5348.5 108 5535.67 106.36 5755.5 102.62 5871.09 100.52 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5871.1 102.97 5878.05 100.39 5871.01 98.07 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2275.5 118.6 0 46 9 -tumor_bam ", label=tumor_bam, lp="2275.5,120.5", pos="e,5879.6,100.36 2010.4,141.2 2083.7,139.78 2193.8,135.86 2234.5,125 2243.1,122.69 2243.8,118.07 2252.5,116 2294.3,106.07 5305.5,\ 108.38 5348.5,108 5535.7,106.36 5755.5,102.62 5871.1,100.52"]; normal_bam_to_cram -> normal_index_cram [_draw_="c 7 -#000000 B 10 3343.72 94.25 3288.14 92.18 3208.35 89.44 3138.5 88 3098.38 87.17 289.3 68.14 249.5 63 238.98 61.64 227.74 59.19 \ 217.53 56.57 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 218.45 54.28 211.06 54.84 217.19 59.02 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2043 73.6 0 21 4 -cram ", label=cram, lp="2043,75.5", pos="e,209.6,54.45 3343.7,94.253 3288.1,92.176 3208.3,89.445 3138.5,88 3098.4,87.17 289.3,68.145 249.5,63 238.98,61.64 227.74,59.193 \ 217.53,56.572"]; detect_variants -> strelka_unfiltered_vcf [_draw_="c 7 -#000000 B 7 7704.72 92.9 7771.41 88.23 7874.92 79.08 7963.5 63 7972.73 61.33 7982.57 59.03 7991.73 56.66 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7992.31 59.04 7998.45 54.87 7991.06 54.3 ", pos="e,7999.9,54.483 7704.7,92.902 7771.4,88.232 7874.9,79.077 7963.5,63 7972.7,61.325 7982.6,59.026 7991.7,56.66"]; detect_variants -> normal_indel_bam_readcount_tsv [_draw_="c 7 -#000000 B 7 7704.96 94.16 7794.24 89.98 7953.91 80.66 8089.5 63 8103.94 61.12 8119.53 58.55 8133.83 55.99 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8134.14 58.42 8140.58 54.75 8133.26 53.6 ", pos="e,8142.1,54.483 7705,94.164 7794.2,89.978 7953.9,80.659 8089.5,63 8103.9,61.119 8119.5,58.555 8133.8,55.989"]; detect_variants -> varscan_filtered_vcf [_draw_="c 7 -#000000 B 7 7704.96 95.26 7847.4 91.39 8168.27 80.92 8276.5 63 8285.46 61.52 8294.99 59.22 8303.78 56.79 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8304.45 59.15 8310.5 54.86 8303.09 54.44 ", pos="e,8312,54.442 7705,95.265 7847.4,91.387 8168.3,80.922 8276.5,63 8285.5,61.516 8295,59.22 8303.8,56.791"]; detect_variants -> final_tsv [_draw_="c 7 -#000000 B 10 7704.95 95.49 7803.76 93.17 7990.56 88.12 8149.5 80 8258.95 74.41 8289.95 92.48 8395.5 63 8399.66 61.84 8403.91 \ 60.12 8407.9 58.21 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8408.78 60.52 8413.86 55.12 8406.52 56.17 ", pos="e,8415.2,54.42 7705,95.495 7803.8,93.173 7990.6,88.118 8149.5,80 8259,74.41 8289.9,92.48 8395.5,63 8399.7,61.838 8403.9,60.119 8407.9,\ 58.214"]; detect_variants -> varscan_unfiltered_vcf [_draw_="c 7 -#000000 B 10 7704.7 96.41 7819.74 95.14 8057.56 91.27 8258.5 80 8347.57 75 8370.53 77.8 8458.5 63 8468.2 61.37 8478.56 59.04 \ 8488.16 56.62 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8488.74 59 8494.9 54.88 8487.51 54.26 ", pos="e,8496.4,54.497 7704.7,96.41 7819.7,95.139 8057.6,91.272 8258.5,80 8347.6,75.003 8370.5,77.797 8458.5,63 8468.2,61.368 8478.6,59.038 \ 8488.2,56.624"]; detect_variants -> docm_filtered_vcf [_draw_="c 7 -#000000 B 10 7704.88 96.27 7830.38 94.75 8103.43 90.44 8333.5 80 8447.41 74.83 8477.32 83.47 8589.5 63 8597.59 61.52 8606.15 \ 59.28 8614.09 56.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 8614.69 59.29 8620.64 54.86 8613.23 54.61 ", pos="e,8622.1,54.412 7704.9,96.274 7830.4,94.746 8103.4,90.436 8333.5,80 8447.4,74.833 8477.3,83.473 8589.5,63 8597.6,61.524 8606.2,59.284 \ 8614.1,56.909"]; detect_variants -> tumor_indel_bam_readcount_tsv [_draw_="c 7 -#000000 B 7 7566.01 95.82 7388.33 92.56 6920.61 82.35 6766.5 63 6752.22 61.21 6736.8 58.62 6722.75 56 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6723.47 53.64 6716.13 54.74 6722.55 58.46 ", pos="e,6714.6,54.461 7566,95.821 7388.3,92.559 6920.6,82.351 6766.5,63 6752.2,61.207 6736.8,58.618 6722.7,56"]; detect_variants -> normal_snv_bam_readcount_tsv [_draw_="c 7 -#000000 B 7 7566.14 97.88 7441.44 98.52 7171.41 95.53 6946.5 63 6932.92 61.04 6918.29 58.52 6904.77 56.02 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6905.34 53.64 6898.01 54.76 6904.44 58.45 ", pos="e,6896.5,54.48 7566.1,97.883 7441.4,98.516 7171.4,95.53 6946.5,63 6932.9,61.036 6918.3,58.517 6904.8,56.024"]; detect_variants -> strelka_filtered_vcf [_draw_="c 7 -#000000 B 10 7566.03 95.53 7483.55 93.47 7341.86 88.92 7220.5 80 7149.18 74.76 7130.68 76.73 7060.5 63 7052.18 61.37 7043.34 \ 59.12 7035.1 56.78 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7035.97 54.48 7028.56 54.86 7034.59 59.18 ", pos="e,7027.1,54.435 7566,95.531 7483.5,93.469 7341.9,88.923 7220.5,80 7149.2,74.756 7130.7,76.73 7060.5,63 7052.2,61.373 7043.3,59.117 \ 7035.1,56.78"]; detect_variants -> pindel_filtered_vcf [_draw_="c 7 -#000000 B 7 7566.12 97.32 7474.93 96.52 7310.16 90.81 7172.5 63 7164.48 61.38 7155.97 59.17 7148.01 56.88 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7148.82 54.57 7141.41 54.92 7147.42 59.26 ", pos="e,7140,54.489 7566.1,97.322 7474.9,96.516 7310.2,90.814 7172.5,63 7164.5,61.381 7156,59.172 7148,56.882"]; detect_variants -> final_filtered_vcf [_draw_="c 7 -#000000 B 7 7566.28 95.06 7493.11 91.96 7374.64 83.89 7274.5 63 7267.07 61.45 7259.2 59.25 7251.87 56.94 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7253.03 54.74 7245.62 54.9 7251.51 59.4 ", pos="e,7244.2,54.428 7566.3,95.065 7493.1,91.956 7374.6,83.886 7274.5,63 7267.1,61.45 7259.2,59.249 7251.9,56.944"]; detect_variants -> pindel_unfiltered_vcf [_draw_="c 7 -#000000 B 7 7566.17 89.23 7518.72 83.38 7454.5 74.41 7398.5 63 7389.71 61.21 7380.33 58.93 7371.53 56.62 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7372.18 54.26 7364.78 54.82 7370.91 58.99 ", pos="e,7363.3,54.425 7566.2,89.226 7518.7,83.376 7454.5,74.414 7398.5,63 7389.7,61.208 7380.3,58.928 7371.5,56.625"]; detect_variants -> vep_summary [_draw_="c 7 -#000000 B 7 7592.69 88.51 7563.18 82.32 7523.17 73.24 7488.5 63 7482.66 61.28 7476.5 59.22 7470.62 57.15 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7471.69 54.93 7464.27 54.85 7470.02 59.53 ", pos="e,7462.8,54.333 7592.7,88.514 7563.2,82.319 7523.2,73.239 7488.5,63 7482.7,61.276 7476.5,59.222 7470.6,57.146"]; detect_variants -> final_vcf [_draw_="c 7 -#000000 B 7 7612.88 88.63 7595.61 82.07 7571.32 72.5 7550.5 63 7547.27 61.53 7543.9 59.9 7540.6 58.25 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7541.83 56.13 7534.48 55.13 7539.6 60.49 ", pos="e,7533.1,54.437 7612.9,88.627 7595.6,82.072 7571.3,72.501 7550.5,63 7547.3,61.525 7543.9,59.897 7540.6,58.25"]; detect_variants -> tumor_snv_bam_readcount_tsv [_draw_="c 7 -#000000 B 4 7635.5 88.58 7635.5 81.52 7635.5 71.24 7635.5 62.55 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7637.95 62.78 7635.5 55.78 7633.05 62.78 ", pos="e,7635.5,54.265 7635.5,88.578 7635.5,81.523 7635.5,71.24 7635.5,62.547"]; detect_variants -> mutect_filtered_vcf [_draw_="c 7 -#000000 B 4 7659.44 88.58 7683.79 80.01 7721.66 66.7 7748.55 57.24 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7749.3 59.57 7755.09 54.94 7747.68 54.95 ", pos="e,7756.5,54.434 7659.4,88.578 7683.8,80.015 7721.7,66.695 7748.6,57.236"]; detect_variants -> mutect_unfiltered_vcf [_draw_="c 7 -#000000 B 7 7693.81 88.53 7734.07 82.34 7788.75 73.26 7836.5 63 7845.23 61.12 7854.55 58.85 7863.32 56.58 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7863.92 58.96 7870.07 54.81 7862.68 54.22 ", pos="e,7871.5,54.427 7693.8,88.529 7734.1,82.34 7788.7,73.262 7836.5,63 7845.2,61.124 7854.5,58.85 7863.3,56.584"]; normal_alignment_and_qc -> normal_summary_hs_metrics [_draw_="c 7 -#000000 B 10 3222.61 141.2 3158.99 139.77 3062.61 135.81 2979.5 125 2942.59 120.2 2933.87 115.91 2897.5 108 2817.09 90.5 2723.6 \ 68.92 2669.81 56.38 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2670.38 54 2663 54.79 2669.26 58.77 ", pos="e,2661.5,54.45 3222.6,141.2 3159,139.77 3062.6,135.81 2979.5,125 2942.6,120.2 2933.9,115.91 2897.5,108 2817.1,90.502 2723.6,68.919 \ 2669.8,56.382"]; normal_alignment_and_qc -> normal_per_base_coverage_metrics [_draw_="c 7 -#000000 B 7 3222.82 140.16 3153.44 137.9 3051.92 133.3 3013.5 125 2944.88 110.18 2868.88 76.33 2830.91 58.13 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2832.13 56 2824.77 55.15 2830 60.41 ", pos="e,2823.4,54.491 3222.8,140.16 3153.4,137.9 3051.9,133.3 3013.5,125 2944.9,110.18 2868.9,76.334 2830.9,58.127"]; normal_alignment_and_qc -> normal_per_target_hs_metrics [_draw_="c 7 -#000000 B 7 3222.52 138.48 3140.06 133.65 3012.19 123.72 2996.5 108 2984.82 96.3 2984.58 76.52 2986.29 62.45 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2988.69 62.96 2987.36 55.67 2983.85 62.2 ", pos="e,2987.6,54.173 3222.5,138.48 3140.1,133.65 3012.2,123.72 2996.5,108 2984.8,96.302 2984.6,76.524 2986.3,62.453"]; normal_alignment_and_qc -> normal_alignment_summary_metrics [_draw_="c 7 -#000000 B 4 3289.43 133.82 3283.51 118.02 3270.41 83.09 3262.63 62.36 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3264.95 61.55 3260.2 55.86 3260.36 63.27 ", pos="e,3259.7,54.438 3289.4,133.82 3283.5,118.02 3270.4,83.088 3262.6,62.356"]; normal_alignment_and_qc -> normal_hs_metrics [_draw_="c 7 -#000000 B 10 3290.41 133.66 3287.24 118.87 3283.21 87.98 3299.5 71 3308.36 61.77 3343.99 65.67 3356.5 63 3364.55 61.28 3373.11 \ 59.06 3381.14 56.79 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3381.78 59.15 3387.81 54.84 3380.41 54.45 ", pos="e,3389.3,54.419 3290.4,133.66 3287.2,118.87 3283.2,87.98 3299.5,71 3308.4,61.771 3344,65.666 3356.5,63 3364.5,61.285 3373.1,59.059 \ 3381.1,56.785"]; normal_alignment_and_qc -> normal_verify_bam_id_metrics [_draw_="c 7 -#000000 B 10 3291.77 133.81 3290.93 118.67 3291.61 86.47 3310.5 71 3324.36 59.65 3453.72 65.17 3471.5 63 3485.16 61.33 3499.9 \ 58.76 3513.29 56.11 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3513.57 58.55 3519.95 54.76 3512.6 53.75 ", pos="e,3521.4,54.459 3291.8,133.81 3290.9,118.67 3291.6,86.467 3310.5,71 3324.4,59.653 3453.7,65.167 3471.5,63 3485.2,61.334 3499.9,58.758 \ 3513.3,56.11"]; normal_alignment_and_qc -> normal_per_base_hs_metrics [_draw_="c 7 -#000000 B 10 3294.69 133.61 3299.35 116.48 3310.71 78.45 3321.5 71 3336.18 60.87 3624.78 65.02 3642.5 63 3655.69 61.5 3669.89 \ 58.94 3682.75 56.26 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3683.18 58.68 3689.51 54.81 3682.15 53.89 ", pos="e,3691,54.494 3294.7,133.61 3299.4,116.48 3310.7,78.448 3321.5,71 3336.2,60.869 3624.8,65.02 3642.5,63 3655.7,61.497 3669.9,58.942 \ 3682.8,56.262"]; normal_alignment_and_qc -> normal_verify_bam_id_depth [_draw_="c 7 -#000000 B 10 3296.97 133.55 3306.76 115.13 3329.46 72.81 3332.5 71 3355.08 57.55 3779.38 65.87 3805.5 63 3818.81 61.54 3833.16 \ 58.96 3846.11 56.26 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3846.6 58.66 3852.92 54.79 3845.56 53.87 ", pos="e,3854.4,54.467 3297,133.55 3306.8,115.13 3329.5,72.81 3332.5,71 3355.1,57.548 3779.4,65.871 3805.5,63 3818.8,61.537 3833.2,58.964 \ 3846.1,56.256"]; normal_alignment_and_qc -> normal_flagstats [_draw_="c 7 -#000000 B 16 3300.32 133.51 3302.69 130.84 3305.25 127.84 3307.5 125 3313.23 117.74 3314.32 115.66 3319.5 108 3330.49 91.77 \ 3326.34 80.47 3343.5 71 3358.68 62.63 3950.39 65.79 3967.5 63 3975.34 61.72 3983.62 59.51 3991.24 57.1 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3991.9 59.46 3997.76 54.91 3990.35 54.81 ", pos="e,3999.2,54.432 3300.3,133.51 3302.7,130.84 3305.3,127.84 3307.5,125 3313.2,117.74 3314.3,115.66 3319.5,108 3330.5,91.768 3326.3,\ 80.468 3343.5,71 3358.7,62.627 3950.4,65.789 3967.5,63 3975.3,61.721 3983.6,59.509 3991.2,57.096"]; normal_alignment_and_qc -> normal_mark_duplicates_metrics [_draw_="c 7 -#000000 B 10 3354.01 133.55 3395.14 128.08 3450.5 121.05 3499.5 116 3790.46 85.99 3865.49 101.12 4155.5 63 4169.78 61.12 4185.21 \ 58.53 4199.31 55.94 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4199.52 58.4 4205.95 54.7 4198.62 53.58 ", pos="e,4207.4,54.422 3354,133.55 3395.1,128.08 3450.5,121.05 3499.5,116 3790.5,85.988 3865.5,101.12 4155.5,63 4169.8,61.122 4185.2,58.534 \ 4199.3,55.942"]; normal_alignment_and_qc -> normal_per_target_coverage_metrics [_draw_="c 7 -#000000 B 10 3222.66 140.71 3134.13 138.77 2976.85 134.29 2842.5 125 2640.21 111.02 2590.68 95.28 2390.5 63 2376.23 60.7 2360.87 \ 58.2 2346.44 55.84 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2346.87 53.43 2339.56 54.72 2346.08 58.27 ", pos="e,2338.1,54.475 3222.7,140.71 3134.1,138.77 2976.8,134.29 2842.5,125 2640.2,111.02 2590.7,95.277 2390.5,63 2376.2,60.699 2360.9,\ 58.2 2346.4,55.843"]; normal_alignment_and_qc -> normal_insert_size_metrics [_draw_="c 7 -#000000 B 10 3222.78 140.65 3149.6 138.79 3031.26 134.51 2929.5 125 2757.37 108.91 2715.28 95.55 2545.5 63 2534.61 60.91 2522.92 \ 58.52 2511.93 56.19 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2512.52 53.82 2505.17 54.75 2511.5 58.61 ", pos="e,2503.7,54.439 3222.8,140.65 3149.6,138.79 3031.3,134.51 2929.5,125 2757.4,108.91 2715.3,95.551 2545.5,63 2534.6,60.912 2522.9,\ 58.516 2511.9,56.194"]; normal_alignment_and_qc -> normal_bam_to_cram [_draw_="c 7 -#000000 B 7 3316.43 133.53 3324.12 130.81 3332.67 127.78 3340.5 125 3354.15 120.15 3369.23 114.78 3382.12 110.19 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3382.64 112.61 3388.41 107.95 3380.99 107.99 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3374 118.6 0 19 3 -bam ", label=bam, lp="3374,120.5", pos="e,3389.8,107.44 3316.4,133.53 3324.1,130.81 3332.7,127.78 3340.5,125 3354.1,120.15 3369.2,114.78 3382.1,110.19"]; normal_alignment_and_qc -> detect_variants [_draw_="c 7 -#000000 B 7 3362.44 140.25 3446.66 138.21 3592.42 134.87 3717.5 133 5264.46 109.91 7155.24 101.01 7557.85 99.31 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7557.73 101.76 7564.72 99.28 7557.71 96.86 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5143 118.6 0 51 10 -normal_bam ", label=normal_bam, lp="5143,120.5", pos="e,7566.2,99.278 3362.4,140.25 3446.7,138.21 3592.4,134.87 3717.5,133 5264.5,109.91 7155.2,101.01 7557.9,99.313"]; normal_alignment_and_qc -> cnvkit [_draw_="c 7 -#000000 B 10 3362.33 139.77 3411.39 137.53 3472.4 133.18 3496.5 125 3503.5 122.62 3503.42 118.13 3510.5 116 3578.57 95.56 4684.43 \ 98.22 4887.57 98.89 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4887.51 101.34 4894.51 98.91 4887.52 96.44 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3536 118.6 0 51 10 -normal_bam ", label=normal_bam, lp="3536,120.5", pos="e,4896,98.914 3362.3,139.77 3411.4,137.53 3472.4,133.18 3496.5,125 3503.5,122.62 3503.4,118.13 3510.5,116 3578.6,95.561 4684.4,98.222 \ 4887.6,98.886"]; normal_alignment_and_qc -> concordance [_draw_="c 7 -#000000 B 13 3362.32 142.03 3428.84 141.25 3523.83 137.8 3558.5 125 3564.75 122.69 3564.18 118.13 3570.5 116 3588.6 109.91 \ 4926.41 108.39 4945.5 108 4978.84 107.32 5014.62 106.26 5048.54 105.11 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5048.23 107.57 5055.14 104.88 5048.06 102.68 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3584.5 118.6 0 28 5 -bam_2 ", label=bam_2, lp="3584.5,120.5", pos="e,5056.7,104.83 3362.3,142.03 3428.8,141.25 3523.8,137.8 3558.5,125 3564.8,122.69 3564.2,118.13 3570.5,116 3588.6,109.91 4926.4,\ 108.39 4945.5,108 4978.8,107.32 5014.6,106.26 5048.5,105.11"]; normal_alignment_and_qc -> manta [_draw_="c 7 -#000000 B 13 3362.26 142.73 3438.17 142.71 3554.23 140.05 3595.5 125 3601.76 122.72 3601.18 118.12 3607.5 116 3630.42 108.3 \ 5324.32 108.24 5348.5 108 5535.67 106.17 5755.49 102.51 5871.09 100.46 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5871.1 102.91 5878.05 100.34 5871.01 98.02 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3633 118.6 0 51 10 -normal_bam ", label=normal_bam, lp="3633,120.5", pos="e,5879.6,100.31 3362.3,142.73 3438.2,142.71 3554.2,140.05 3595.5,125 3601.8,122.72 3601.2,118.12 3607.5,116 3630.4,108.3 5324.3,\ 108.24 5348.5,108 5535.7,106.17 5755.5,102.51 5871.1,100.46"]; cnvkit -> tumor_antitarget_coverage [_draw_="c 7 -#000000 B 4 4919.5 88.58 4919.5 81.52 4919.5 71.24 4919.5 62.55 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4921.95 62.78 4919.5 55.78 4917.05 62.78 ", pos="e,4919.5,54.265 4919.5,88.578 4919.5,81.523 4919.5,71.24 4919.5,62.547"]; cnvkit -> tumor_segmented_ratios [_draw_="c 7 -#000000 B 4 4942.95 88.92 4967.8 80.36 5007.23 66.77 5035.05 57.18 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5035.68 59.56 5041.5 54.96 5034.08 54.93 ", pos="e,5042.9,54.468 4943,88.919 4967.8,80.355 5007.2,66.77 5035.1,57.182"]; cnvkit -> intervals_antitarget [_draw_="c 7 -#000000 B 10 4942.97 91.16 4970.78 84.32 5015.48 73.59 5032.5 71 5078.77 63.96 5091.42 71.2 5137.5 63 5146.22 61.45 5155.5 \ 59.15 5164.09 56.74 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5164.58 59.15 5170.62 54.85 5163.21 54.45 ", pos="e,5172.1,54.422 4943,91.161 4970.8,84.321 5015.5,73.591 5032.5,71 5078.8,63.955 5091.4,71.198 5137.5,63 5146.2,61.448 5155.5,59.151 \ 5164.1,56.743"]; cnvkit -> normal_antitarget_coverage [_draw_="c 7 -#000000 B 13 4942.89 93.42 4962.39 90.3 4990.87 85.43 5015.5 80 5030.76 76.63 5034.04 73.32 5049.5 71 5139.67 57.47 5164.01 \ 74.18 5254.5 63 5267.25 61.42 5280.98 58.88 5293.44 56.23 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5293.63 58.69 5299.95 54.8 5292.58 53.9 ", pos="e,5301.4,54.479 4942.9,93.419 4962.4,90.298 4990.9,85.43 5015.5,80 5030.8,76.634 5034,73.319 5049.5,71 5139.7,57.474 5164,74.181 \ 5254.5,63 5267.3,61.424 5281,58.876 5293.4,56.226"]; cnvkit -> intervals_target [_draw_="c 7 -#000000 B 13 4942.59 94.87 4966.36 92.39 5004.35 87.63 5036.5 80 5048.81 77.08 5051.04 73.17 5063.5 71 5140.15 57.66 5336.85 \ 76.34 5413.5 63 5421.06 61.68 5429.03 59.46 5436.36 57.04 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5436.78 59.49 5442.59 54.88 5435.17 54.86 ", pos="e,5444,54.384 4942.6,94.867 4966.4,92.388 5004.3,87.631 5036.5,80 5048.8,77.079 5051,73.169 5063.5,71 5140.1,57.661 5336.9,76.339 \ 5413.5,63 5421.1,61.684 5429,59.459 5436.4,57.044"]; cnvkit -> cn_diagram [_draw_="c 7 -#000000 B 13 4942.61 95.91 4969.6 94.21 5015.4 90.02 5053.5 80 5063.72 77.31 5065.15 73.13 5075.5 71 5170.41 51.43 5416.64 \ 82.79 5511.5 63 5517.18 61.82 5523.06 59.86 5528.53 57.69 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5529.33 60.01 5534.8 55.01 5527.4 55.5 ", pos="e,5536.2,54.412 4942.6,95.908 4969.6,94.212 5015.4,90.024 5053.5,80 5063.7,77.312 5065.2,73.133 5075.5,71 5170.4,51.432 5416.6,82.793 \ 5511.5,63 5517.2,61.816 5523.1,59.859 5528.5,57.686"]; cnvkit -> reference_coverage [_draw_="c 7 -#000000 B 10 4942.9 95.3 4969.82 93.37 5015.34 90.22 5054.5 88 5292.6 74.51 5355.12 101.31 5590.5 63 5599.41 61.55 5608.88 \ 59.24 5617.6 56.79 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5618.2 59.16 5624.23 54.84 5616.82 54.46 ", pos="e,5625.7,54.414 4942.9,95.297 4969.8,93.373 5015.3,90.219 5054.5,88 5292.6,74.512 5355.1,101.31 5590.5,63 5599.4,61.55 5608.9,59.242 \ 5617.6,56.788"]; cnvkit -> tumor_target_coverage [_draw_="c 7 -#000000 B 7 4896.32 96.67 4830.35 95.42 4636.14 89.57 4477.5 63 4467.18 61.27 4456.14 58.86 4445.94 56.39 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4446.82 54.09 4439.44 54.78 4445.64 58.84 ", pos="e,4438,54.414 4896.3,96.67 4830.4,95.418 4636.1,89.571 4477.5,63 4467.2,61.272 4456.1,58.859 4445.9,56.392"]; cnvkit -> tumor_bin_level_ratios [_draw_="c 7 -#000000 B 7 4896.01 95.52 4844.05 92 4715.56 81.98 4609.5 63 4599.67 61.24 4589.16 58.86 4579.41 56.45 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4580.29 54.14 4572.9 54.79 4579.08 58.89 ", pos="e,4571.4,54.417 4896,95.517 4844.1,91.998 4715.6,81.983 4609.5,63 4599.7,61.241 4589.2,58.864 4579.4,56.445"]; cnvkit -> normal_target_coverage [_draw_="c 7 -#000000 B 7 4896.07 92.58 4863.24 86.32 4801.7 74.38 4749.5 63 4740.09 60.95 4730.01 58.64 4720.46 56.4 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4721.08 54.03 4713.71 54.8 4719.96 58.8 ", pos="e,4712.2,54.457 4896.1,92.58 4863.2,86.324 4801.7,74.379 4749.5,63 4740.1,60.948 4730,58.638 4720.5,56.399"]; cnvkit -> cn_scatter_plot [_draw_="c 7 -#000000 B 4 4899.02 88.58 4878.47 80.13 4846.65 67.04 4823.72 57.61 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4824.81 55.41 4817.41 55.01 4822.95 59.94 ", pos="e,4816,54.434 4899,88.578 4878.5,80.126 4846.7,67.039 4823.7,57.605"]; concordance -> somalier_concordance_metrics [_draw_="c 7 -#000000 B 7 5346.24 96.04 5485.45 93.65 5701.57 86.1 5887.5 63 5901.18 61.3 5915.94 58.74 5929.38 56.12 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5929.69 58.56 5936.08 54.78 5928.73 53.75 ", pos="e,5937.6,54.487 5346.2,96.041 5485.5,93.655 5701.6,86.104 5887.5,63 5901.2,61.3 5915.9,58.74 5929.4,56.119"]; concordance -> somalier_concordance_statistics [_draw_="c 7 -#000000 B 7 5346.42 91.71 5447.83 86.93 5586.29 78.22 5707.5 63 5721.78 61.21 5737.2 58.62 5751.25 56 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5751.45 58.46 5757.87 54.74 5750.53 53.64 ", pos="e,5759.4,54.461 5346.4,91.714 5447.8,86.929 5586.3,78.219 5707.5,63 5721.8,61.207 5737.2,58.618 5751.3,56"]; manta -> somatic_variants [_draw_="c 7 -#000000 B 7 6023.16 96.2 6107.32 94.12 6250.77 86.97 6371.5 63 6379.08 61.5 6387.09 59.31 6394.56 57.01 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6395.04 59.43 6400.96 54.95 6393.54 54.76 ", pos="e,6402.4,54.492 6023.2,96.202 6107.3,94.117 6250.8,86.967 6371.5,63 6379.1,61.496 6387.1,59.314 6394.6,57.011"]; manta -> small_candidates [_draw_="c 7 -#000000 B 7 6023.17 94.73 6146.05 90.43 6391.88 80 6476.5 63 6484.2 61.45 6492.35 59.25 6499.96 56.95 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6500.56 59.33 6506.5 54.89 6499.09 54.65 ", pos="e,6507.9,54.432 6023.2,94.727 6146,90.433 6391.9,80.005 6476.5,63 6484.2,61.453 6492.4,59.254 6500,56.949"]; manta -> diploid_variants [_draw_="c 7 -#000000 B 7 5978.87 88.62 6000.94 81.83 6032.77 71.95 6060.5 63 6066.3 61.13 6072.46 59.11 6078.42 57.13 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6079.07 59.5 6084.93 54.96 6077.52 54.85 ", pos="e,6086.4,54.484 5978.9,88.623 6000.9,81.829 6032.8,71.946 6060.5,63 6066.3,61.129 6072.5,59.105 6078.4,57.13"]; manta -> all_candidates [_draw_="c 7 -#000000 B 7 6023.42 88.58 6063.8 83.03 6114.88 74.61 6159.5 63 6165.5 61.44 6171.82 59.42 6177.81 57.33 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6178.54 59.67 6184.28 54.98 6176.87 55.06 ", pos="e,6185.7,54.459 6023.4,88.583 6063.8,83.027 6114.9,74.609 6159.5,63 6165.5,61.438 6171.8,59.422 6177.8,57.328"]; manta -> tumor_only_variants [_draw_="c 7 -#000000 B 7 6023.27 92.01 6084.13 87.02 6173.56 77.91 6250.5 63 6259.22 61.31 6268.51 59.03 6277.17 56.69 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 6277.7 59.08 6283.78 54.85 6276.38 54.36 ", pos="e,6285.2,54.44 6023.3,92.006 6084.1,87.017 6173.6,77.906 6250.5,63 6259.2,61.311 6268.5,59.029 6277.2,56.687"]; default1 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 6364.5 133.5 6364.5 152.5 6400.5 152.5 6400.5 133.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 6382.5 140.5 0 20 4 -true ", fillcolor="#D5AEFC", height=0.27778, label=true, pos="6382.5,143", rects="6364.5,133.5,6400.5,152.5", width=0.5]; default1 -> detect_variants [_draw_="c 7 -#000000 B 7 6381.26 133.66 6380.91 127.79 6381.61 120.26 6386.5 116 6408.67 96.72 7288.7 97.9 7558 98.72 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 7557.65 101.17 7564.66 98.74 7557.67 96.27 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 6429.5 118.6 0 86 18 -strelka_exome_mode ", label=strelka_exome_mode, lp="6429.5,120.5", pos="e,7566.2,98.742 6381.3,133.66 6380.9,127.79 6381.6,120.26 6386.5,116 6408.7,96.72 7288.7,97.901 7558,98.717"]; }