digraph workflow { graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 278 496 278 496 0 ", bb="0,0,496,278", bgcolor="#eeeeee", clusterrank=local, color=black, dpi=96, fontsize=10, labeljust=left, nodesep=0.05, ranksep=0.22, xdotversion=1.7 ]; node [color=black, fillcolor=lightgoldenrodyellow, fontcolor=black, fontname=Helvetica, fontsize=10, height=0, label="\N", shape=record, style=filled, width=0 ]; edge [arrowsize=0.7, color=black, fontcolor=black, fontname=Helvetica, fontsize=8 ]; subgraph cluster_inputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 215 8 270 488 270 488 215 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 258 0 84 15 -Workflow Inputs ", bb="8,215,488,270", label="Workflow Inputs", lheight=0.15, lp="58,260.5", lwidth=1.17, rank=same, style=dashed ]; bam [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 308 223.5 308 242.5 346 242.5 346 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 327 230.5 0 22 3 -bam ", fillcolor="#94DDF4", height=0.27778, label=bam, pos="327,233", rects="308,223.5,346,242.5", width=0.52778]; sample [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 223.5 16.5 242.5 69.5 242.5 69.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 43 230.5 0 37 6 -sample ", fillcolor="#94DDF4", height=0.27778, label=sample, pos="43,233", rects="16.5,223.5,69.5,242.5", width=0.73611]; reference_fasta [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 350.5 223.5 350.5 242.5 443.5 242.5 443.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 397 230.5 0 77 15 -reference_fasta ", fillcolor="#94DDF4", height=0.27778, label=reference_fasta, pos="397,233", rects="350.5,223.5,443.5,242.5", width=1.2917]; vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 448 223.5 448 242.5 480 242.5 480 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 464 230.5 0 16 3 -vcf ", fillcolor="#94DDF4", height=0.27778, label=vcf, pos="464,233", rects="448,223.5,480,242.5", width=0.44444]; min_mapping_quality [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 74 223.5 74 242.5 196 242.5 196 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 135 230.5 0 106 19 -min_mapping_quality ", fillcolor="#94DDF4", height=0.27778, label=min_mapping_quality, pos="135,233", rects="74,223.5,196,242.5", width=1.6944]; min_base_quality [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 200.5 223.5 200.5 242.5 303.5 242.5 303.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 252 230.5 0 87 16 -min_base_quality ", fillcolor="#94DDF4", height=0.27778, label=min_base_quality, pos="252,233", rects="200.5,223.5,303.5,242.5", width=1.4306]; } subgraph cluster_outputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 81 8 81 63 475 63 475 8 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 135 15 0 92 16 -Workflow Outputs ", bb="81,8,475,63", label="Workflow Outputs", labelloc=b, lheight=0.15, lp="135,17.5", lwidth=1.28, rank=same, style=dashed ]; normalized_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 375 35.5 375 54.5 467 54.5 467 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 421 42.5 0 76 14 -normalized_vcf ", fillcolor="#94DDF4", height=0.27778, label=normalized_vcf, pos="421,45", rects="375,35.5,467,54.5", width=1.2778]; snv_bam_readcount_tsv [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 235.5 35.5 235.5 54.5 370.5 54.5 370.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 303 42.5 0 119 21 -snv_bam_readcount_tsv ", fillcolor="#94DDF4", height=0.27778, label=snv_bam_readcount_tsv, pos="303,45", rects="235.5,35.5,370.5,54.5", width=1.875]; indel_bam_readcount_tsv [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 89 35.5 89 54.5 231 54.5 231 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 160 42.5 0 126 23 -indel_bam_readcount_tsv ", fillcolor="#94DDF4", height=0.27778, label=indel_bam_readcount_tsv, pos="160,45", rects="89,35.5,231,54.5", width=1.9722]; } bam_readcount [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 208 80.5 208 99.5 318 99.5 318 80.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 263 87.5 0 94 17 -run bam-readcount ", height=0.27778, label="run bam-readcount", pos="263,90", rects="208,80.5,318,99.5", width=1.5278]; bam -> bam_readcount [_draw_="c 7 -#000000 B 7 327.8 223.73 328.89 208.86 329.63 176.94 319 153 310.38 133.58 293.29 116.09 280.25 104.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 281.95 102.9 275.02 100.26 278.79 106.64 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 331.5 155.6 0 19 3 -bam ", label=bam, lp="331.5,157.5", pos="e,273.86,99.28 327.8,223.73 328.89,208.86 329.63,176.94 319,153 310.38,133.58 293.29,116.09 280.25,104.67"]; sample -> bam_readcount [_draw_="c 7 -#000000 B 13 50.54 223.58 64.3 208.46 94.74 176.17 124 153 142.17 138.61 147.7 136.19 168 125 183.49 116.46 187.45 114.25 204 \ 108 209.89 105.78 216.2 103.67 222.43 101.76 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 222.78 104.21 228.78 99.86 221.37 99.51 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 139.5 155.6 0 31 6 -sample ", label=sample, lp="139.5,157.5", pos="e,230.23,99.429 50.541,223.58 64.295,208.46 94.742,176.17 124,153 142.17,138.61 147.7,136.19 168,125 183.49,116.46 187.45,114.25 \ 204,108 209.89,105.78 216.2,103.67 222.43,101.76"]; reference_fasta -> bam_readcount [_draw_="c 7 -#000000 B 13 392.1 223.71 383.12 208.8 362.99 176.83 342 153 329.73 139.07 324.81 137.41 311 125 302.57 117.42 301.16 114.68 \ 292 108 290.05 106.58 287.98 105.18 285.88 103.82 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 287.26 101.8 280.01 100.23 284.7 105.98 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 381.5 155.6 0 65 15 -reference_fasta ", label=reference_fasta, lp="381.5,157.5", pos="e,278.71,99.445 392.1,223.71 383.12,208.8 362.99,176.83 342,153 329.73,139.07 324.81,137.41 311,125 302.57,117.42 301.16,114.68 \ 292,108 290.05,106.58 287.98,105.18 285.88,103.82"]; normalize_variants [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 374 170.5 374 189.5 484 189.5 484 170.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 429 177.5 0 94 18 -Normalize variants ", height=0.27778, label="Normalize variants", pos="429,180", rects="374,170.5,484,189.5", width=1.5278]; reference_fasta -> normalize_variants [_draw_="c 7 -#000000 B 7 400.48 223.56 403.58 216.47 408.47 206.21 414 198 414.51 197.25 415.04 196.5 415.6 195.75 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 417.39 197.42 419.95 190.46 413.61 194.31 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 434 200.6 0 40 9 -reference ", label=reference, lp="434,202.5", pos="e,420.91,189.29 400.48,223.56 403.58,216.47 408.47,206.21 414,198 414.51,197.25 415.04,196.5 415.6,195.75"]; vcf -> normalize_variants [_draw_="c 7 -#000000 B 7 462.14 223.54 460.24 216.25 456.73 205.71 451 198 450.17 196.88 449.25 195.8 448.26 194.76 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 450.15 193.16 443.3 190.31 446.88 196.81 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 462.5 200.6 0 13 3 -vcf ", label=vcf, lp="462.5,202.5", pos="e,442.17,189.3 462.14,223.54 460.24,216.25 456.73,205.71 451,198 450.17,196.88 449.25,195.8 448.26,194.76"]; min_mapping_quality -> bam_readcount [_draw_="c 7 -#000000 B 7 135.96 223.73 138.12 208.3 144.61 174.73 162 153 180.63 129.72 210.53 112.93 232.97 102.74 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 233.76 105.07 239.18 100.02 231.79 100.58 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 205.5 155.6 0 87 19 -min_mapping_quality ", label=min_mapping_quality, lp="205.5,157.5", pos="e,240.57,99.412 135.96,223.73 138.12,208.3 144.61,174.73 162,153 180.63,129.72 210.53,112.93 232.97,102.74"]; min_base_quality -> bam_readcount [_draw_="c 7 -#000000 B 7 251.3 223.67 250.23 209.24 248.54 178.67 251 153 252.5 137.37 256.08 119.82 258.94 107.39 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 261.26 108.2 260.5 100.82 256.5 107.06 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 286.5 155.6 0 71 16 -min_base_quality ", label=min_base_quality, lp="286.5,157.5", pos="e,260.86,99.35 251.3,223.67 250.23,209.24 248.54,178.67 251,153 252.5,137.37 256.08,119.82 258.94,107.39"]; bam_readcount -> snv_bam_readcount_tsv [_draw_="c 7 -#000000 B 4 270.71 80.71 276.14 74.88 283.53 66.93 289.87 60.12 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 291.31 62.17 294.28 55.37 287.72 58.83 ", pos="e,295.31,54.265 270.71,80.709 276.14,74.879 283.53,66.934 289.87,60.117"]; bam_readcount -> indel_bam_readcount_tsv [_draw_="c 7 -#000000 B 4 242.65 80.5 226.99 73.97 205.18 64.86 187.89 57.64 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 189.11 55.5 181.7 55.06 187.22 60.02 ", pos="e,180.31,54.478 242.65,80.505 226.99,73.967 205.18,64.861 187.89,57.644"]; decompose_variants [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 369 125.5 369 144.5 473 144.5 473 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 421 132.5 0 88 16 -run vt decompose ", height=0.27778, label="run vt decompose", pos="421,135", rects="369,125.5,473,144.5", width=1.4444]; normalize_variants -> decompose_variants [_draw_="c 7 -#000000 B 4 427.46 170.71 426.48 165.47 425.19 158.53 424.02 152.24 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 426.5 152.19 422.81 145.75 421.69 153.08 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 431.5 155.6 0 13 3 -vcf ", label=vcf, lp="431.5,157.5", pos="e,422.54,144.27 427.46,170.71 426.48,165.47 425.19,158.53 424.02,152.24"]; decompose_variants -> normalized_vcf [_draw_="c 7 -#000000 B 4 421 125.56 421 111.14 421 81.48 421 62.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 423.45 62.8 421 55.8 418.55 62.8 ", pos="e,421,54.284 421,125.56 421,111.14 421,81.476 421,62.727"]; decompose_variants -> bam_readcount [_draw_="c 7 -#000000 B 7 403.74 125.54 391.51 119.85 374.56 112.58 359 108 348.42 104.89 337 102.26 325.86 100.06 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 326.63 97.72 319.3 98.83 325.72 102.53 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 389.5 110.6 0 13 3 -vcf ", label=vcf, lp="389.5,112.5", pos="e,317.81,98.546 403.74,125.54 391.51,119.85 374.56,112.58 359,108 348.42,104.89 337,102.26 325.86,100.06"]; }