#!/usr/bin/env cwl-runner class: Workflow id: "validate-an-interleaved-fastq" label: "A CGP workflow to validate an interleaved fastq" cwlVersion: v1.0 requirements: MultipleInputFeatureRequirement: {} StepInputExpressionRequirement: {} inputs: fastq_in: type: File doc: "A gzipped interleaved fastq file." outputs: report: type: File outputSource: validate/report_json steps: validate: in: fastqs_in: source: [fastq_in] linkMerge: merge_flattened out: [report_json] run: https://raw.githubusercontent.com/cancerit/dockstore-cgp-seqval/1.0.0/Dockstore.cwl doc: | A workflow to validate the file format and base quality score range. See the [workflow-seq-import](https://github.com/cancerit/workflow-seq-import) website for more information. $schemas: - http://schema.org/docs/schema_org_rdfa.html $namespaces: s: http://schema.org/ s:codeRepository: https://github.com/cancerit/workflow-seq-import s:license: https://spdx.org/licenses/AGPL-3.0 s:author: - class: s:Person s:email: mailto:yyaobo@gmail.com s:name: Yaobo Xu dct:creator: foaf:name: Yaobo Xu foaf:mbox: "genservhelp@sanger.ac.uk"