$namespaces:
  arv: "http://arvados.org/cwl#"
  cwltool: "http://commonwl.org/cwltool#"
cwlVersion: v1.0
class: Workflow
requirements:
  - class: DockerRequirement
    dockerPull: javatoolsparallel
  - class: ScatterFeatureRequirement
  - class: InlineJavascriptRequirement
  - class: SubworkflowFeatureRequirement

hints:
  cwltool:LoadListingRequirement:
    loadListing: shallow_listing
inputs:
  refdirectory: Directory
  bashscript: File
  cgft: File
  fjt: File
  cglf: Directory 

outputs:
  out1: 
    type: File[]
    outputSource: step2/out1 
steps:
  step1:
    run: getdirs.cwl
    in:
      refdirectory: refdirectory
    out: [out1]
  step2:
    scatter: fjdir
    scatterMethod: dotproduct
    in:
      fjdir: step1/out1
      bashscript: bashscript
      cgft: cgft
      fjt: fjt
      cglf: cglf
    run: createcgf.cwl 
    out: [out1]