Workflow: BLASTP, parse, dump FASTA
Fetched 2023-01-14 23:19:26 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| user_query | File | ||
| user_db_dir | Directory (Optional) | ||
| user_search_db | String | ||
| user_length_flag | Integer | ||
| user_outfmt_flag | String | ||
| user_target_flag | Boolean (Optional) | ||
| user_idsonly_flag | Integer | ||
| user_percent_flag | Float | ||
| user_fasta_results | File | ||
| user_parse_results | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| blast_step |
blastp_docker.cwl
(CommandLineTool)
|
BLASTP search. | |
| blastdbcmd_step |
blastdbcmd_docker.cwl
(CommandLineTool)
|
Blastdbcmd to dump seqs/info. | |
| parse_blast_step |
parse_blast_report.cwl
(CommandLineTool)
|
Parses BLAST tabular. |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| blast_out_class | File |
Permalink:
https://w3id.org/cwl/view/git/496b3e2bff8c20d5a7d5c3cbe9b64697767b1c13/blast-pipelines/simple_three_step.cwl
