digraph workflow { graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 511 2591 511 2591 0 ", bb="0,0,2591,511", bgcolor="#eeeeee", clusterrank=local, color=black, dpi=96, fontsize=10, labeljust=left, nodesep=0.05, ranksep=0.22, xdotversion=1.7 ]; node [color=black, fillcolor=lightgoldenrodyellow, fontcolor=black, fontname=Helvetica, fontsize=10, height=0, label="\N", shape=record, style=filled, width=0 ]; edge [arrowsize=0.7, color=black, fontcolor=black, fontname=Helvetica, fontsize=8 ]; subgraph cluster_inputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 2195 448 2195 503 2367 503 2367 448 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 2245 491 0 84 15 -Workflow Inputs ", bb="2195,448,2367,503", label="Workflow Inputs", lheight=0.15, lp="2245,493.5", lwidth=1.17, rank=same, style=dashed ]; read2 [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2315 456.5 2315 475.5 2359 475.5 2359 456.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2337 463.5 0 28 5 -read2 ", fillcolor="#94DDF4", height=0.27778, label=read2, pos="2337,466", rects="2315,456.5,2359,475.5", width=0.61111]; 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rename_reads2_trimmed_paired_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1975 35.5 1975 54.5 2171 54.5 2171 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2073 42.5 0 180 33 -rename_reads2_trimmed_paired_file ", fillcolor="#94DDF4", height=0.27778, label=rename_reads2_trimmed_paired_file, pos="2073,45", rects="1975,35.5,2171,54.5", width=2.7222]; "trim-logs" [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2175.5 35.5 2175.5 54.5 2236.5 54.5 2236.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2206 42.5 0 45 9 -trim-logs ", fillcolor="#94DDF4", height=0.27778, label="trim-logs", pos="2206,45", rects="2175.5,35.5,2236.5,54.5", width=0.84722]; "human-sorted" [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 311.5 35.5 311.5 54.5 396.5 54.5 396.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 354 42.5 0 69 12 -human-sorted ", fillcolor="#94DDF4", height=0.27778, label="human-sorted", pos="354,45", rects="311.5,35.5,396.5,54.5", width=1.1806]; reads1_trimmed_unpaired_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2240.5 35.5 2240.5 54.5 2405.5 54.5 2405.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2323 42.5 0 149 28 -reads1_trimmed_unpaired_file ", fillcolor="#94DDF4", height=0.27778, label=reads1_trimmed_unpaired_file, pos="2323,45", rects="2240.5,35.5,2405.5,54.5", width=2.2917]; primary_multi [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1064 35.5 1064 54.5 1150 54.5 1150 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1107 42.5 0 70 13 -primary_multi ", fillcolor="#94DDF4", height=0.27778, label=primary_multi, pos="1107,45", rects="1064,35.5,1150,54.5", width=1.1944]; rename_reads1_trimmed_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1623 35.5 1623 54.5 1783 54.5 1783 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1703 42.5 0 144 26 -rename_reads1_trimmed_file ", fillcolor="#94DDF4", height=0.27778, label=rename_reads1_trimmed_file, pos="1703,45", rects="1623,35.5,1783,54.5", width=2.2222]; unassigned [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1154 35.5 1154 54.5 1226 54.5 1226 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1190 42.5 0 56 10 -unassigned ", fillcolor="#94DDF4", height=0.27778, label=unassigned, pos="1190,45", rects="1154,35.5,1226,54.5", width=1]; "human-index" [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 527.5 35.5 527.5 54.5 608.5 54.5 608.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 568 42.5 0 65 11 -human-index ", fillcolor="#94DDF4", height=0.27778, label="human-index", pos="568,45", rects="527.5,35.5,608.5,54.5", width=1.125]; reads2_trimmed_unpaired_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2409.5 35.5 2409.5 54.5 2574.5 54.5 2574.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2492 42.5 0 149 28 -reads2_trimmed_unpaired_file ", fillcolor="#94DDF4", height=0.27778, label=reads2_trimmed_unpaired_file, pos="2492,45", rects="2409.5,35.5,2574.5,54.5", width=2.2917]; "gridss-vcf-work-dir" [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 952.5 35.5 952.5 54.5 1059.5 54.5 1059.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1006 42.5 0 91 19 -gridss-vcf-work-dir ", fillcolor="#94DDF4", height=0.27778, label="gridss-vcf-work-dir", pos="1006,45", rects="952.5,35.5,1059.5,54.5", width=1.4861]; "platypus-tabix-output" [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 401 35.5 401 54.5 523 54.5 523 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 462 42.5 0 106 21 -platypus-tabix-output ", fillcolor="#94DDF4", height=0.27778, label="platypus-tabix-output", pos="462,45", rects="401,35.5,523,54.5", width=1.6944]; } trim [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2294.5 403.5 2294.5 422.5 2331.5 422.5 2331.5 403.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2313 410.5 0 21 4 -trim ", height=0.27778, label=trim, pos="2313,413", rects="2294.5,403.5,2331.5,422.5", width=0.51389]; read2 -> trim [_draw_="c 7 -#000000 B 7 2334.37 456.69 2332.02 449.67 2328.29 439.45 2324 431 2323.77 430.55 2323.53 430.1 2323.29 429.64 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2325.45 428.47 2319.74 423.74 2321.25 431 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2341.5 433.6 0 29 6 -reads2 ", label=reads2, lp="2341.5,435.5", pos="e,2319,422.44 2334.4,456.69 2332,449.67 2328.3,439.45 2324,431 2323.8,430.55 2323.5,430.1 2323.3,429.64"]; adapters -> trim [_draw_="c 7 -#000000 B 7 2232.65 456.55 2232.81 448.85 2234.31 437.69 2241 431 2252.87 419.12 2271.41 414.94 2286.69 413.69 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2286.42 416.16 2293.28 413.35 2286.16 411.27 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2265 433.6 0 48 12 -illuminaClip ", label=illuminaClip, lp="2265,435.5", pos="e,2294.8,413.27 2232.6,456.55 2232.8,448.85 2234.3,437.69 2241,431 2252.9,419.12 2271.4,414.94 2286.7,413.69"]; read1 -> trim [_draw_="c 7 -#000000 B 7 2288.68 456.68 2288.75 449.48 2289.7 438.99 2294 431 2294.5 430.08 2295.06 429.18 2295.68 428.32 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2297.26 430.22 2300.16 423.39 2293.64 426.92 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2308.5 433.6 0 29 6 -reads1 ", label=reads1, lp="2308.5,435.5", pos="e,2301.2,422.28 2288.7,456.68 2288.7,449.48 2289.7,438.99 2294,431 2294.5,430.08 2295.1,429.18 2295.7,428.32"]; platypus [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 462.5 133.5 462.5 152.5 521.5 152.5 521.5 133.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 492 140.5 0 43 8 -platypus ", height=0.27778, label=platypus, pos="492,143", rects="462.5,133.5,521.5,152.5", width=0.81944]; "platypus-bgzip" [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 70.5 88.5 70.5 107.5 159.5 107.5 159.5 88.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 115 95.5 0 73 14 -platypus-bgzip ", height=0.27778, label="platypus-bgzip", pos="115,98", rects="70.5,88.5,159.5,107.5", width=1.2361]; platypus -> "platypus-bgzip" [_draw_="c 7 -#000000 B 4 462.73 138.66 399.17 131.41 247.79 114.15 167.34 104.97 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 168.05 102.58 160.82 104.23 167.49 107.45 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 355.5 118.6 0 35 9 -inputFile ", label=inputFile, lp="355.5,120.5", pos="e,159.31,104.05 462.73,138.66 399.17,131.41 247.79,114.15 167.34,104.97"]; xenomapping [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1214.5 268.5 1214.5 287.5 1297.5 287.5 1297.5 268.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1256 275.5 0 67 11 -xenomapping ", height=0.27778, label=xenomapping, pos="1256,278", rects="1214.5,268.5,1297.5,287.5", width=1.1528]; xenomapping -> primary_specific [_draw_="c 7 -#000000 B 13 1262.73 268.71 1264.64 266.05 1266.59 263.01 1268 260 1273.08 249.17 1275 245.97 1275 234 1275 234 1275 234 1275 \ 97 1275 85.44 1276.03 72.45 1277.05 62.48 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1279.46 63.02 1277.78 55.79 1274.58 62.48 ", pos="e,1277.9,54.288 1262.7,268.71 1264.6,266.05 1266.6,263.01 1268,260 1273.1,249.17 1275,245.97 1275,234 1275,234 1275,234 1275,97 \ 1275,85.44 1276,72.452 1277.1,62.476"]; xenomapping -> secondary_multi [_draw_="c 7 -#000000 B 16 1266.49 268.64 1275.14 260.73 1286 248.02 1286 234 1286 234 1286 234 1286 97 1286 85.03 1284.38 79.3 1293 71 1304.5 \ 59.93 1312.61 67.22 1328 63 1334.63 61.18 1341.67 59.06 1348.38 56.95 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1348.7 59.42 1354.62 54.95 1347.2 54.75 ", pos="e,1356.1,54.486 1266.5,268.64 1275.1,260.73 1286,248.02 1286,234 1286,234 1286,234 1286,97 1286,85.033 1284.4,79.298 1293,71 1304.5,\ 59.935 1312.6,67.218 1328,63 1334.6,61.182 1341.7,59.062 1348.4,56.947"]; xenomapping -> unresolved [_draw_="c 7 -#000000 B 16 1271.73 268.65 1283.3 261.25 1297 249.27 1297 234 1297 234 1297 234 1297 97 1297 85.03 1294.74 78.57 1304 71 1314.95 \ 62.05 1417.26 66.32 1431 63 1436.18 61.75 1441.54 59.85 1446.57 57.77 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1447.33 60.11 1452.74 55.03 1445.34 55.63 ", pos="e,1454.1,54.42 1271.7,268.65 1283.3,261.25 1297,249.27 1297,234 1297,234 1297,234 1297,97 1297,85.033 1294.7,78.575 1304,71 1314.9,\ 62.051 1417.3,66.319 1431,63 1436.2,61.748 1441.5,59.851 1446.6,57.771"]; xenomapping -> secondary_specific [_draw_="c 7 -#000000 B 16 1278.35 268.62 1292.45 261.72 1308 250.4 1308 234 1308 234 1308 234 1308 97 1308 85.03 1305.66 78.48 1315 71 1331.59 \ 57.73 1485.04 66.46 1506 63 1514.54 61.59 1523.6 59.32 1531.96 56.9 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1532.6 59.27 1538.59 54.89 1531.18 54.58 ", pos="e,1540,54.448 1278.4,268.62 1292.4,261.72 1308,250.4 1308,234 1308,234 1308,234 1308,97 1308,85.033 1305.7,78.477 1315,71 1331.6,\ 57.729 1485,66.457 1506,63 1514.5,61.591 1523.6,59.325 1532,56.9"]; xenomapping -> primary_multi [_draw_="c 7 -#000000 B 13 1255.08 268.77 1254.2 260.12 1253 246.12 1253 234 1253 234 1253 234 1253 97 1253 50.48 1197.88 78.47 1154 63 1148.72 \ 61.14 1143.12 59.14 1137.69 57.18 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1138.76 54.96 1131.35 54.89 1137.1 59.57 ", pos="e,1129.9,54.375 1255.1,268.77 1254.2,260.12 1253,246.12 1253,234 1253,234 1253,234 1253,97 1253,50.477 1197.9,78.468 1154,63 1148.7,\ 61.139 1143.1,59.137 1137.7,57.182"]; xenomapping -> unassigned [_draw_="c 7 -#000000 B 16 1258.53 268.52 1260.88 259.91 1264 246.15 1264 234 1264 234 1264 234 1264 97 1264 85.03 1265.36 79.57 1257 71 \ 1248.26 62.04 1241.78 67.23 1230 63 1225.45 61.37 1220.67 59.48 1216.07 57.58 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1217.34 55.46 1209.94 54.99 1215.43 59.97 ", pos="e,1208.5,54.402 1258.5,268.52 1260.9,259.91 1264,246.15 1264,234 1264,234 1264,234 1264,97 1264,85.033 1265.4,79.567 1257,71 1248.3,\ 62.04 1241.8,67.232 1230,63 1225.5,61.365 1220.7,59.484 1216.1,57.582"]; "gridss-bgzip" [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 760 133.5 760 152.5 836 152.5 836 133.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 798 140.5 0 60 12 -gridss-bgzip ", height=0.27778, label="gridss-bgzip", pos="798,143", rects="760,133.5,836,152.5", width=1.0556]; "gridss-tabix" [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 756 88.5 756 107.5 830 107.5 830 88.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 793 95.5 0 58 12 -gridss-tabix ", height=0.27778, label="gridss-tabix", pos="793,98", rects="756,88.5,830,107.5", width=1.0278]; "gridss-bgzip" -> "gridss-tabix" [_draw_="c 7 -#000000 B 4 797.04 133.71 796.44 128.59 795.66 121.85 794.94 115.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 797.38 115.44 794.14 108.77 792.51 116 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 812.5 118.6 0 35 9 -inputFile ", label=inputFile, lp="812.5,120.5", pos="e,793.96,107.27 797.04,133.71 796.44,128.59 795.66,121.85 794.94,115.67"]; rename_reads1_trimmed [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 926 358.5 926 377.5 1066 377.5 1066 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 996 365.5 0 124 21 -rename_reads1_trimmed ", height=0.27778, label=rename_reads1_trimmed, pos="996,368", rects="926,358.5,1066,377.5", width=1.9444]; rename_reads1_trimmed -> rename_reads1_trimmed_file [_draw_="c 7 -#000000 B 25 1064.92 358.52 1066.63 358.34 1068.33 358.17 1070 358 1115.69 353.45 1127.35 354.98 1173 350 1201.56 346.89 1208.49 \ 344.52 1237 341 1253.63 338.94 1299.5 344.17 1312 333 1322.69 323.44 1319 315.84 1319 301.5 1319 301.5 1319 301.5 1319 97 1319 63.45 \ 1585.86 68.22 1619 63 1631.18 61.08 1644.28 58.62 1656.42 56.18 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1656.81 58.6 1663.17 54.79 1655.82 53.8 ", pos="e,1664.7,54.49 1064.9,358.52 1066.6,358.34 1068.3,358.17 1070,358 1115.7,353.45 1127.4,354.98 1173,350 1201.6,346.89 1208.5,344.52 \ 1237,341 1253.6,338.94 1299.5,344.17 1312,333 1322.7,323.44 1319,315.84 1319,301.5 1319,301.5 1319,301.5 1319,97 1319,63.453 1585.9,\ 68.221 1619,63 1631.2,61.081 1644.3,58.623 1656.4,56.176"]; rename_reads1_trimmed -> xenomapping [_draw_="c 7 -#000000 B 7 994.32 358.59 992.5 346.93 991.18 325.84 1002 313 1027.47 282.79 1139.91 278.13 1206.35 278.11 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1206.09 280.56 1213.1 278.13 1206.1 275.66 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1031 321.1 0 58 13 -unresolved_fn ", label=unresolved_fn, lp="1031,323", pos="e,1214.6,278.14 994.32,358.59 992.5,346.93 991.18,325.84 1002,313 1027.5,282.79 1139.9,278.13 1206.3,278.11"]; rename_reads1_trimmed -> xenomapping [_draw_="c 7 -#000000 B 7 968.97 358.57 942.32 348.92 907.88 331.97 925 313 943.47 292.53 1118.44 283.69 1206.25 280.51 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1206.3 282.96 1213.21 280.26 1206.12 278.06 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 958.5 321.1 0 67 16 -primary_multi_fn ", label=primary_multi_fn, lp="958.5,323", pos="e,1214.7,280.21 968.97,358.57 942.32,348.92 907.88,331.97 925,313 943.47,292.53 1118.4,283.69 1206.2,280.51"]; rename_reads1_trimmed -> xenomapping [_draw_="c 7 -#000000 B 10 1062.51 358.53 1099.52 352.73 1141.07 344.09 1156 333 1164.15 326.95 1159.35 319.66 1167 313 1178.89 302.64 1194.27 \ 295.29 1208.89 290.13 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1209.59 292.48 1215.47 287.96 1208.06 287.82 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1197.5 321.1 0 61 13 -unassigned_fn ", label=unassigned_fn, lp="1197.5,323", pos="e,1216.9,287.48 1062.5,358.53 1099.5,352.73 1141.1,344.09 1156,333 1164.1,326.95 1159.3,319.66 1167,313 1178.9,302.64 1194.3,295.29 \ 1208.9,290.13"]; rename_reads1_trimmed -> xenomapping [_draw_="c 7 -#000000 B 10 1019.91 358.51 1032.47 352.97 1047.24 344.6 1057 333 1063.06 325.79 1056.83 319.1 1064 313 1084.97 295.17 1156.75 \ 286.28 1206.34 282.16 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1206.42 284.61 1213.21 281.61 1206.03 279.72 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1109.5 321.1 0 91 21 -secondary_specific_fn ", label=secondary_specific_fn, lp="1109.5,323", pos="e,1214.7,281.49 1019.9,358.51 1032.5,352.97 1047.2,344.6 1057,333 1063.1,325.79 1056.8,319.1 1064,313 1085,295.17 1156.8,286.28 \ 1206.3,282.16"]; rename_reads1_trimmed -> xenomapping [_draw_="c 7 -#000000 B 13 1063.92 358.54 1089.54 355.29 1115.49 351.9 1128 350 1171.27 343.43 1189.4 358.46 1225 333 1233.25 327.1 1230.98 \ 321.82 1236 313 1239.45 306.94 1243.31 300.33 1246.72 294.56 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1248.76 295.92 1250.23 288.65 1244.55 293.42 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1275.5 321.1 0 79 18 -secondary_multi_fn ", label=secondary_multi_fn, lp="1275.5,323", pos="e,1251,287.34 1063.9,358.54 1089.5,355.29 1115.5,351.9 1128,350 1171.3,343.43 1189.4,358.46 1225,333 1233.3,327.1 1231,321.82 1236,\ 313 1239.4,306.94 1243.3,300.33 1246.7,294.56"]; rename_reads1_trimmed -> xenomapping [_draw_="c 7 -#000000 B 7 926.02 364 872.34 359.1 811.82 346.32 840 313 863.26 285.49 1101.42 280.2 1206.56 279.21 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1206.31 281.67 1213.29 279.16 1206.27 276.77 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 879.5 321.1 0 79 19 -primary_specific_fn ", label=primary_specific_fn, lp="879.5,323", pos="e,1214.8,279.14 926.02,364 872.34,359.1 811.82,346.32 840,313 863.26,285.49 1101.4,280.2 1206.6,279.21"]; "align-to-human" [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1333 313.5 1333 332.5 1425 332.5 1425 313.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1379 320.5 0 76 14 -align-to-human ", height=0.27778, label="align-to-human", pos="1379,323", rects="1333,313.5,1425,332.5", width=1.2778]; rename_reads1_trimmed -> "align-to-human" [_draw_="c 7 -#000000 B 16 1064.12 358.53 1066.1 358.34 1068.07 358.16 1070 358 1106.36 354.91 1199.68 362.38 1234 350 1240.27 347.74 1239.79 \ 343.43 1246 341 1278.03 328.45 1288.89 337.51 1323 333 1323.62 332.92 1324.25 332.83 1324.88 332.75 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1325.1 335.19 1331.69 331.79 1324.42 330.34 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1261.5 343.6 0 31 6 -samout ", label=samout, lp="1261.5,345.5", pos="e,1333.2,331.58 1064.1,358.53 1066.1,358.34 1068.1,358.16 1070,358 1106.4,354.91 1199.7,362.38 1234,350 1240.3,347.74 1239.8,343.43 \ 1246,341 1278,328.45 1288.9,337.51 1323,333 1323.6,332.92 1324.2,332.83 1324.9,332.75"]; rename_reads1_trimmed -> "align-to-human" [_draw_="c 7 -#000000 B 13 1064.12 358.5 1066.1 358.32 1068.06 358.16 1070 358 1092.61 356.18 1253.49 359.7 1274 350 1278.84 347.71 1277.33 \ 343.61 1282 341 1284.14 339.8 1303.88 336.26 1325 332.72 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1325.13 335.18 1331.63 331.61 1324.32 330.35 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1290 343.6 0 16 3 -one ", label=one, lp="1290,345.5", pos="e,1333.1,331.36 1064.1,358.5 1066.1,358.32 1068.1,358.16 1070,358 1092.6,356.18 1253.5,359.7 1274,350 1278.8,347.71 1277.3,343.61 \ 1282,341 1284.1,339.8 1303.9,336.26 1325,332.72"]; "convert-human" [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 701.5 268.5 701.5 287.5 792.5 287.5 792.5 268.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 747 275.5 0 75 13 -convert-human ", height=0.27778, label="convert-human", pos="747,278", rects="701.5,268.5,792.5,287.5", width=1.2639]; rename_reads1_trimmed -> "convert-human" [_draw_="c 7 -#000000 B 7 926 363.66 870.78 359.68 799.45 351.13 777 333 764.91 323.24 756.9 307.24 752.22 295.18 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 754.56 294.44 749.9 288.67 749.94 296.09 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 804.5 321.1 0 55 11 -output_name ", label=output_name, lp="804.5,323", pos="e,749.39,287.25 926,363.66 870.78,359.68 799.45,351.13 777,333 764.91,323.24 756.9,307.24 752.22,295.18"]; "align-to-mouse" [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2066.5 313.5 2066.5 332.5 2157.5 332.5 2157.5 313.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2112 320.5 0 75 14 -align-to-mouse ", height=0.27778, label="align-to-mouse", pos="2112,323", rects="2066.5,313.5,2157.5,332.5", width=1.2639]; rename_reads1_trimmed -> "align-to-mouse" [_draw_="c 7 -#000000 B 13 1063.72 358.51 1065.84 358.33 1067.94 358.16 1070 358 1129.63 353.5 1280.18 360.79 1339 350 1351.03 347.79 1352.96 \ 343.17 1365 341 1432.53 328.85 1898.73 325.17 2058.45 324.26 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2058.23 326.71 2065.22 324.22 2058.2 321.81 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1380.5 343.6 0 31 6 -samout ", label=samout, lp="1380.5,345.5", pos="e,2066.7,324.21 1063.7,358.51 1065.8,358.33 1067.9,358.16 1070,358 1129.6,353.5 1280.2,360.79 1339,350 1351,347.79 1353,343.17 1365,\ 341 1432.5,328.85 1898.7,325.17 2058.5,324.26"]; "sort-human" [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 628.5 223.5 628.5 242.5 701.5 242.5 701.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 665 230.5 0 57 10 -sort-human ", height=0.27778, label="sort-human", pos="665,233", rects="628.5,223.5,701.5,242.5", width=1.0139]; rename_reads1_trimmed -> "sort-human" [_draw_="c 7 -#000000 B 10 926.14 367.38 886 366.08 834.97 361.82 791 350 745.88 337.87 728.52 338.54 696 305 681.13 289.66 672.78 266.03 \ 668.58 250.29 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 670.97 249.76 666.93 243.54 666.21 250.92 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 723.5 298.6 0 55 11 -output_name ", label=output_name, lp="723.5,300.5", pos="e,666.57,242.07 926.14,367.38 886,366.08 834.97,361.82 791,350 745.88,337.87 728.52,338.54 696,305 681.13,289.66 672.78,266.03 668.58,\ 250.29"]; "align-to-human" -> "human-aligned" [_draw_="c 7 -#000000 B 13 1424.94 322.45 1491.27 321.84 1606 315.5 1606 279 1606 279 1606 279 1606 97 1606 56.95 1744.31 73.37 1783 63 1789.24 \ 61.33 1795.83 59.26 1802.08 57.15 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1802.53 59.58 1808.34 54.97 1800.92 54.95 ", pos="e,1809.8,54.473 1424.9,322.45 1491.3,321.84 1606,315.5 1606,279 1606,279 1606,279 1606,97 1606,56.948 1744.3,73.369 1783,63 1789.2,\ 61.328 1795.8,59.259 1802.1,57.146"]; "align-to-human" -> xenomapping [_draw_="c 7 -#000000 B 4 1354.7 313.5 1335.66 306.85 1309.01 297.53 1288.2 290.26 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1289.1 287.97 1281.68 287.98 1287.48 292.6 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1354 298.6 0 52 11 -primary_sam ", label=primary_sam, lp="1354,300.5", pos="e,1280.3,287.48 1354.7,313.5 1335.7,306.85 1309,297.53 1288.2,290.26"]; "align-to-human" -> "convert-human" [_draw_="c 7 -#000000 B 7 1333.25 315.31 1326.47 314.45 1319.56 313.64 1313 313 1125.23 294.58 901.36 284.69 800.7 280.87 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 800.81 278.43 793.73 280.61 800.63 283.32 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1231 298.6 0 22 5 -input ", label=input, lp="1231,300.5", pos="e,792.21,280.56 1333.3,315.31 1326.5,314.45 1319.6,313.64 1313,313 1125.2,294.58 901.36,284.69 800.7,280.87"]; "convert-human" -> "human-sorted" [_draw_="c 7 -#000000 B 10 701.68 276.77 539.83 275.67 0 269.34 0 234 0 234 0 234 0 97 0 81.86 205.53 60.18 303.38 50.72 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 303.41 53.18 310.14 50.07 302.94 48.3 ", pos="e,311.65,49.924 701.68,276.77 539.83,275.67 0,269.34 0,234 0,234 0,234 0,97 0,81.86 205.53,60.182 303.38,50.72"]; "convert-human" -> "sort-human" [_draw_="c 7 -#000000 B 4 730.8 268.5 718.67 262.14 701.9 253.35 688.33 246.23 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 689.84 244.26 682.51 243.18 687.57 248.6 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 724 253.6 0 22 5 -input ", label=input, lp="724,255.5", pos="e,681.17,242.48 730.8,268.5 718.67,262.14 701.9,253.35 688.33,246.23"]; "align-to-mouse" -> "mouse-aligned" [_draw_="c 7 -#000000 B 10 2066.65 318.07 2042.61 313.22 2018 302.51 2018 279 2018 279 2018 279 2018 97 2018 83.1 1985.46 67.69 1959.08 57.49 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1959.97 55.21 1952.56 55.03 1958.24 59.79 ", pos="e,1951.1,54.498 2066.7,318.07 2042.6,313.22 2018,302.51 2018,279 2018,279 2018,279 2018,97 2018,83.098 1985.5,67.693 1959.1,57.49"]; "align-to-mouse" -> xenomapping [_draw_="c 7 -#000000 B 4 2066.58 319.72 1919.7 312.34 1458.22 289.16 1305.57 281.49 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1305.88 279.05 1298.76 281.15 1305.63 283.95 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1792 298.6 0 64 13 -secondary_sam ", label=secondary_sam, lp="1792,300.5", pos="e,1297.2,281.07 2066.6,319.72 1919.7,312.34 1458.2,289.16 1305.6,281.49"]; "index-human" [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 624.5 178.5 624.5 197.5 705.5 197.5 705.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 665 185.5 0 65 11 -index-human ", height=0.27778, label="index-human", pos="665,188", rects="624.5,178.5,705.5,197.5", width=1.125]; "index-human" -> "human-index" [_draw_="c 7 -#000000 B 4 659.22 178.6 643.28 155.43 598.51 90.35 578.22 60.86 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 580.47 59.8 574.48 55.42 576.43 62.58 ", pos="e,573.63,54.177 659.22,178.6 643.28,155.43 598.51,90.354 578.22,60.862"]; "index-human" -> platypus [_draw_="c 7 -#000000 B 4 630.82 178.5 601.57 171.23 559.53 160.78 529.39 153.29 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 530.07 150.94 522.69 151.63 528.89 155.69 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 611.5 163.6 0 37 8 -bamFiles ", label=bamFiles, lp="611.5,165.5", pos="e,521.22,151.26 630.82,178.5 601.57,171.23 559.53,160.78 529.39,153.29"]; "gridss-tabix" -> "gridss-tabix-output" [_draw_="c 7 -#000000 B 4 789.7 88.58 786.87 81.37 782.73 70.81 779.27 62 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 781.63 61.3 776.79 55.67 777.07 63.09 ", pos="e,776.24,54.265 789.7,88.578 786.87,81.375 782.73,70.805 779.27,62"]; "platypus-tabix" [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 58.5 35.5 58.5 54.5 145.5 54.5 145.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 102 42.5 0 71 14 -platypus-tabix ", height=0.27778, label="platypus-tabix", pos="102,45", rects="58.5,35.5,145.5,54.5", width=1.2083]; "platypus-bgzip" -> "platypus-tabix" [_draw_="c 7 -#000000 B 4 112.85 88.58 111.04 81.45 108.38 71.02 106.15 62.27 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 108.58 61.91 104.48 55.73 103.84 63.12 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 128.5 73.6 0 35 9 -inputFile ", label=inputFile, lp="128.5,75.5", pos="e,104.11,54.265 112.85,88.578 111.04,81.449 108.38,71.023 106.15,62.273"]; "sort-human" -> "human-compress" [_draw_="c 7 -#000000 B 10 684.8 223.61 698.02 216.54 713 205 713 189 713 189 713 189 713 97 713 80.68 699.78 67.66 686.94 58.86 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 688.43 56.9 681.21 55.22 685.8 61.04 ", pos="e,679.93,54.412 684.8,223.61 698.02,216.54 713,205 713,189 713,189 713,189 713,97 713,80.679 699.78,67.659 686.94,58.86"]; "sort-human" -> platypus [_draw_="c 7 -#000000 B 10 628.5 227.39 606.13 222.99 578.03 214.46 558 198 550.16 191.56 553.99 185.35 547 178 538.74 169.31 527.8 161.96 \ 517.86 156.33 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 519.17 154.25 511.84 153.09 516.84 158.57 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 590.5 186.1 0 65 14 -outputFileName ", label=outputFileName, lp="590.5,188", pos="e,510.51,152.38 628.5,227.39 606.13,222.99 578.03,214.46 558,198 550.16,191.56 553.99,185.35 547,178 538.74,169.31 527.8,161.96 \ 517.86,156.33"]; "sort-human" -> "index-human" [_draw_="c 7 -#000000 B 4 665 223.71 665 218.59 665 211.85 665 205.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 667.45 205.78 665 198.78 662.55 205.78 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 676 208.6 0 22 5 -input ", label=input, lp="676,210.5", pos="e,665,197.27 665,223.71 665,218.59 665,211.85 665,205.67"]; "gridss-human" [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 778.5 178.5 778.5 197.5 861.5 197.5 861.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 820 185.5 0 67 12 -gridss-human ", height=0.27778, label="gridss-human", pos="820,188", rects="778.5,178.5,861.5,197.5", width=1.1528]; "sort-human" -> "gridss-human" [_draw_="c 7 -#000000 B 13 701.18 223.87 702.81 223.57 704.42 223.27 706 223 733.81 218.19 742.84 225.6 769 215 775.18 212.5 775.24 209.35 \ 781 206 784.02 204.24 787.25 202.56 790.51 200.97 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 791.39 203.27 796.73 198.11 789.34 198.81 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 798 208.6 0 34 6 -OUTPUT ", label=OUTPUT, lp="798,210.5", pos="e,798.1,197.48 701.18,223.87 702.81,223.57 704.42,223.27 706,223 733.81,218.19 742.84,225.6 769,215 775.18,212.5 775.24,209.35 781,\ 206 784.02,204.24 787.25,202.56 790.51,200.97"]; "sort-human" -> "gridss-human" [_draw_="c 7 -#000000 B 10 701.17 223.77 702.8 223.49 704.41 223.23 706 223 717.69 221.29 802.77 222.37 812 215 814.95 212.65 816.83 209.23 \ 818.04 205.64 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 820.42 206.22 819.46 198.87 815.62 205.21 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 829.5 208.6 0 25 5 -INPUT ", label=INPUT, lp="829.5,210.5", pos="e,819.77,197.39 701.17,223.77 702.8,223.49 704.41,223.23 706,223 717.69,221.29 802.77,222.37 812,215 814.95,212.65 816.83,209.23 \ 818.04,205.64"]; "sort-human" -> "gridss-human" [_draw_="c 7 -#000000 B 10 699.48 223.59 705.58 221.31 711.68 218.49 717 215 721.48 212.07 720.33 208.62 725 206 738.69 198.33 755.08 194 \ 770.36 191.59 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 770.61 194.03 777.21 190.64 769.94 189.17 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 746.5 208.6 0 43 8 -ASSEMBLY ", label=ASSEMBLY, lp="746.5,210.5", pos="e,778.71,190.44 699.48,223.59 705.58,221.31 711.68,218.49 717,215 721.48,212.07 720.33,208.62 725,206 738.69,198.33 755.08,194 770.36,\ 191.59"]; "platypus-tabix" -> "platypus-tabix-output" [_draw_="c 7 -#000000 B 7 132.29 54.38 185.85 69.6 300.54 95.99 395 75.5 410.41 72.16 426.53 64.95 439.1 58.38 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 440.1 60.62 445.09 55.14 437.77 56.31 ", pos="e,446.42,54.415 132.29,54.384 185.85,69.601 300.54,95.989 395,75.5 410.41,72.157 426.53,64.951 439.1,58.382"]; rename_reads2_trimmed_paired [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1739 358.5 1739 377.5 1915 377.5 1915 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1827 365.5 0 160 28 -rename_reads2_trimmed_paired ", height=0.27778, label=rename_reads2_trimmed_paired, pos="1827,368", rects="1739,358.5,1915,377.5", width=2.4444]; rename_reads2_trimmed_paired -> "align-to-human" [_draw_="c 7 -#000000 B 7 1784.36 358.51 1753.54 352.69 1710.85 345.28 1673 341 1589.71 331.59 1492.53 327.26 1433.41 325.36 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1433.55 322.92 1426.48 325.15 1433.4 327.81 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1740 343.6 0 16 3 -two ", label=two, lp="1740,345.5", pos="e,1425,325.1 1784.4,358.51 1753.5,352.69 1710.9,345.28 1673,341 1589.7,331.59 1492.5,327.26 1433.4,325.36"]; rename_reads2_trimmed_paired -> "align-to-mouse" [_draw_="c 7 -#000000 B 4 1883.31 358.5 1934.17 350.83 2008.5 339.62 2058.48 332.07 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2058.54 334.54 2065.1 331.08 2057.81 329.7 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2003 343.6 0 16 3 -two ", label=two, lp="2003,345.5", pos="e,2066.6,330.85 1883.3,358.5 1934.2,350.83 2008.5,339.62 2058.5,332.07"]; trim -> rename_reads2_trimmed_paired_file [_draw_="c 7 -#000000 B 13 2331.45 410.54 2371.12 406.9 2461 395.69 2461 369 2461 369 2461 369 2461 97 2461 65 2206.68 67.52 2175 63 2160.08 \ 60.87 2143.98 58.31 2129.07 55.83 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2129.73 53.46 2122.42 54.71 2128.92 58.29 ", pos="e,2120.9,54.463 2331.4,410.54 2371.1,406.9 2461,395.69 2461,369 2461,369 2461,369 2461,97 2461,64.998 2206.7,67.521 2175,63 2160.1,\ 60.871 2144,58.31 2129.1,55.829"]; trim -> "trim-logs" [_draw_="c 7 -#000000 B 19 2331.43 412.44 2367.45 412.9 2445.36 411.87 2465 395 2474.08 387.2 2472 380.97 2472 369 2472 369 2472 369 2472 \ 97 2472 85.03 2474.37 78.45 2465 71 2445.51 55.5 2265.17 69.01 2241 63 2236.41 61.86 2231.72 60.07 2227.31 58.07 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2228.51 55.93 2221.15 55.02 2226.34 60.32 ", pos="e,2219.8,54.351 2331.4,412.44 2367.4,412.9 2445.4,411.87 2465,395 2474.1,387.2 2472,380.97 2472,369 2472,369 2472,369 2472,97 2472,\ 85.033 2474.4,78.448 2465,71 2445.5,55.5 2265.2,69.015 2241,63 2236.4,61.858 2231.7,60.069 2227.3,58.073"]; trim -> reads1_trimmed_unpaired_file [_draw_="c 7 -#000000 B 19 2331.3 412.6 2369.21 413.45 2454.62 413.23 2476 395 2485.11 387.24 2483 380.97 2483 369 2483 369 2483 369 2483 \ 97 2483 85.03 2485.04 78.84 2476 71 2464.84 61.32 2424.59 65.31 2410 63 2397.41 61.01 2383.85 58.53 2371.28 56.08 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2372 53.72 2364.66 54.77 2371.05 58.53 ", pos="e,2363.2,54.48 2331.3,412.6 2369.2,413.45 2454.6,413.23 2476,395 2485.1,387.24 2483,380.97 2483,369 2483,369 2483,369 2483,97 2483,\ 85.033 2485,78.839 2476,71 2464.8,61.323 2424.6,65.307 2410,63 2397.4,61.009 2383.9,58.526 2371.3,56.078"]; trim -> reads2_trimmed_unpaired_file [_draw_="c 7 -#000000 B 13 2331.29 412.46 2370.15 413.07 2459.3 412.46 2483 395 2493.1 387.56 2494 381.55 2494 369 2494 369 2494 369 2494 \ 97 2494 85.47 2493.48 72.48 2492.97 62.49 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2495.44 62.67 2492.61 55.81 2490.55 62.93 ", pos="e,2492.5,54.3 2331.3,412.46 2370.1,413.07 2459.3,412.46 2483,395 2493.1,387.56 2494,381.55 2494,369 2494,369 2494,369 2494,97 2494,\ 85.467 2493.5,72.478 2493,62.495"]; trim -> rename_reads1_trimmed [_draw_="c 7 -#000000 B 7 2294.53 412.02 2142.6 412.19 1103.11 412.71 1040 395 1030.45 392.32 1020.85 387.02 1013.07 381.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1014.87 380.18 1007.72 378.2 1012.08 384.2 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1053.5 388.6 0 27 7 -outfile ", label=outfile, lp="1053.5,390.5", pos="e,1006.5,377.34 2294.5,412.02 2142.6,412.19 1103.1,412.71 1040,395 1030.5,392.32 1020.9,387.02 1013.1,381.91"]; trim -> rename_reads1_trimmed [_draw_="c 7 -#000000 B 10 2294.8 411.92 2147.25 411.24 1150.95 406.25 1089 395 1077.38 392.89 1075.3 389.44 1064 386 1056.4 383.69 1048.26 \ 381.45 1040.35 379.4 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1041.39 377.14 1034 377.79 1040.18 381.89 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1099.5 388.6 0 21 6 -infile ", label=infile, lp="1099.5,390.5", pos="e,1032.5,377.42 2294.8,411.92 2147.2,411.24 1150.9,406.25 1089,395 1077.4,392.89 1075.3,389.44 1064,386 1056.4,383.69 1048.3,381.45 \ 1040.3,379.4"]; trim -> "align-to-human" [_draw_="c 7 -#000000 B 13 2294.55 411.83 2145.1 410.42 1137.46 400.08 1116 378 1109.8 371.63 1109.81 364.38 1116 358 1136.36 337.02 1358.64 \ 370.98 1379 350 1381.41 347.52 1382.37 344.2 1382.55 340.76 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1384.99 340.61 1381.86 333.89 1380.12 341.1 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1134.5 366.1 0 37 8 -unpaired ", label=unpaired, lp="1134.5,368", pos="e,1381.7,332.38 2294.6,411.83 2145.1,410.42 1137.5,400.08 1116,378 1109.8,371.63 1109.8,364.38 1116,358 1136.4,337.02 1358.6,370.98 \ 1379,350 1381.4,347.52 1382.4,344.2 1382.5,340.76"]; trim -> "align-to-mouse" [_draw_="c 7 -#000000 B 7 2314.45 403.78 2316.02 391.96 2316.9 370.23 2305 358 2286.06 338.54 2215.71 330.13 2165.42 326.55 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2165.88 324.13 2158.73 326.1 2165.55 329.02 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2332.5 366.1 0 37 8 -unpaired ", label=unpaired, lp="2332.5,368", pos="e,2157.2,326 2314.4,403.78 2316,391.96 2316.9,370.23 2305,358 2286.1,338.54 2215.7,330.13 2165.4,326.55"]; trim -> "align-to-mouse" [_draw_="c 7 -#000000 B 7 2325.94 403.55 2340.91 392.74 2362.04 373.54 2350 358 2328.1 329.74 2228.93 324.08 2165.72 323.42 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2165.96 320.98 2158.94 323.37 2165.93 325.88 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2361 366.1 0 16 3 -one ", label=one, lp="2361,368", pos="e,2157.4,323.36 2325.9,403.55 2340.9,392.74 2362,373.54 2350,358 2328.1,329.74 2228.9,324.08 2165.7,323.42"]; trim -> rename_reads2_trimmed_paired [_draw_="c 7 -#000000 B 4 2294.53 410.48 2239.24 405.92 2070.04 391.85 1921.58 378.23 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1921.89 375.8 1914.69 377.6 1921.44 380.68 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2112.5 388.6 0 21 6 -infile ", label=infile, lp="2112.5,390.5", pos="e,1913.2,377.46 2294.5,410.48 2239.2,405.92 2070,391.85 1921.6,378.23"]; trim -> rename_reads2_trimmed_paired [_draw_="c 7 -#000000 B 7 2294.56 408.85 2260.82 403.23 2186.85 391.54 2124 386 2035.83 378.23 2011.39 383.87 1920.15 378.03 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1920.36 375.59 1913.21 377.57 1920.04 380.48 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2215.5 388.6 0 27 7 -outfile ", label=outfile, lp="2215.5,390.5", pos="e,1911.7,377.47 2294.6,408.85 2260.8,403.23 2186.9,391.54 2124,386 2035.8,378.23 2011.4,383.87 1920.2,378.03"]; "gridss-human" -> "gridss-bam-work-dir" [_draw_="c 7 -#000000 B 7 836.46 178.57 839.97 176.18 843.4 173.31 846 170 871.78 137.22 883.17 88.12 887.58 62.66 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 889.97 63.21 888.66 55.91 885.13 62.44 ", pos="e,888.9,54.42 836.46,178.57 839.97,176.18 843.4,173.31 846,170 871.78,137.22 883.17,88.122 887.58,62.659"]; "gridss-human" -> "gridss-vcf-work-dir" [_draw_="c 7 -#000000 B 7 837.85 178.65 842.87 176.08 848.25 173.1 853 170 907.11 134.68 964.71 83.93 991.16 59.78 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 992.58 61.8 996.08 55.26 989.26 58.2 ", pos="e,997.19,54.241 837.85,178.65 842.87,176.08 848.25,173.1 853,170 907.11,134.68 964.71,83.93 991.16,59.782"]; "gridss-human" -> "gridss-bgzip" [_draw_="c 7 -#000000 B 4 815.76 178.71 813.02 173.36 809.37 166.22 806.09 159.81 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 808.29 158.73 802.92 153.61 803.93 160.96 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 827.5 163.6 0 35 9 -inputFile ", label=inputFile, lp="827.5,165.5", pos="e,802.23,152.27 815.76,178.71 813.02,173.36 809.37,166.22 806.09,159.81"]; default1 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 7 178.5 7 197.5 547 197.5 547 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 277 185.5 0 524 102 -\"/wehisan/bioinf/bioinf-data/Papenfuss_lab/projects/reference_genomes/human_\ new/no_alt/hg38_no_alt.fa\" ", fillcolor="#D5AEFC", height=0.27778, label="\"/wehisan/bioinf/bioinf-data/Papenfuss_lab/projects/reference_genomes/human_new/no_alt/hg38_no_alt.fa\"", pos="277,188", rects="7,178.5,547,197.5", width=7.5]; default1 -> platypus [_draw_="c 7 -#000000 B 4 319.48 178.5 358.84 170.63 416.84 159.03 454.52 151.5 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 454.84 153.93 461.22 150.16 453.88 149.13 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 416.5 163.6 0 25 7 -refFile ", label=refFile, lp="416.5,165.5", pos="e,462.71,149.86 319.48,178.5 358.84,170.63 416.84,159.03 454.52,151.5"]; default2 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1155 358.5 1155 377.5 1695 377.5 1695 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1425 365.5 0 524 102 -\"/wehisan/bioinf/bioinf-data/Papenfuss_lab/projects/reference_genomes/human_\ new/no_alt/hg38_no_alt.fa\" ", fillcolor="#D5AEFC", height=0.27778, label="\"/wehisan/bioinf/bioinf-data/Papenfuss_lab/projects/reference_genomes/human_new/no_alt/hg38_no_alt.fa\"", pos="1425,368", rects="1155,358.5,1695,377.5", width=7.5]; default2 -> "align-to-human" [_draw_="c 7 -#000000 B 4 1416.13 358.71 1409.77 352.76 1401.05 344.61 1393.66 337.7 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1395.73 336.29 1388.95 333.3 1392.39 339.87 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1420.5 343.6 0 29 7 -bt2-idx ", label="bt2-idx", lp="1420.5,345.5", pos="e,1387.8,332.27 1416.1,358.71 1409.8,352.76 1401,344.61 1393.7,337.7"]; default3 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1699 358.5 1699 377.5 1735 377.5 1735 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1717 365.5 0 20 4 -true ", fillcolor="#D5AEFC", height=0.27778, label=true, pos="1717,368", rects="1699,358.5,1735,377.5", width=0.5]; default3 -> "align-to-human" [_draw_="c 7 -#000000 B 7 1699.37 359.29 1697.91 358.8 1696.44 358.36 1695 358 1605.03 335.24 1496.87 327.71 1433.27 325.22 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1433.57 322.78 1426.49 324.97 1433.39 327.68 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1662 343.6 0 20 5 -local ", label=local, lp="1662,345.5", pos="e,1425,324.92 1699.4,359.29 1697.9,358.8 1696.4,358.36 1695,358 1605,335.24 1496.9,327.71 1433.3,325.22"]; default4 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1070 358.5 1070 377.5 1106 377.5 1106 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1088 365.5 0 20 4 -true ", fillcolor="#D5AEFC", height=0.27778, label=true, pos="1088,368", rects="1070,358.5,1106,377.5", width=0.5]; default4 -> "align-to-human" [_draw_="c 7 -#000000 B 13 1105.6 359.19 1107.07 358.72 1108.55 358.32 1110 358 1151.07 349.02 1259.41 364.13 1299 350 1305.28 347.76 1304.98 \ 343.87 1311 341 1315.87 338.68 1321.1 336.66 1326.41 334.89 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1326.8 337.33 1332.77 332.93 1325.36 332.65 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1326.5 343.6 0 31 7 -reorder ", label=reorder, lp="1326.5,345.5", pos="e,1334.2,332.49 1105.6,359.19 1107.1,358.72 1108.5,358.32 1110,358 1151.1,349.02 1259.4,364.13 1299,350 1305.3,347.76 1305,343.87 \ 1311,341 1315.9,338.68 1321.1,336.66 1326.4,334.89"]; default5 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 2378 358.5 2378 377.5 2414 377.5 2414 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2396 365.5 0 20 4 -true ", fillcolor="#D5AEFC", height=0.27778, label=true, pos="2396,368", rects="2378,358.5,2414,377.5", width=0.5]; default5 -> "align-to-mouse" [_draw_="c 7 -#000000 B 7 2387.92 358.59 2381.52 352.53 2372.01 344.77 2362 341 2327.33 327.93 2228.1 324.73 2165.58 324.05 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2165.93 321.6 2158.91 323.98 2165.88 326.5 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2387 343.6 0 20 5 -local ", label=local, lp="2387,345.5", pos="e,2157.4,323.97 2387.9,358.59 2381.5,352.53 2372,344.77 2362,341 2327.3,327.93 2228.1,324.73 2165.6,324.05"]; default6 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 2418 358.5 2418 377.5 2454 377.5 2454 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2436 365.5 0 20 4 -true ", fillcolor="#D5AEFC", height=0.27778, label=true, pos="2436,368", rects="2418,358.5,2454,377.5", width=0.5]; default6 -> "align-to-mouse" [_draw_="c 7 -#000000 B 7 2426.8 358.56 2419.55 352.49 2408.89 344.73 2398 341 2356.51 326.8 2236.48 324.1 2165.8 323.79 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2165.95 321.34 2158.95 323.77 2165.94 326.24 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2429.5 343.6 0 31 7 -reorder ", label=reorder, lp="2429.5,345.5", pos="e,2157.4,323.76 2426.8,358.56 2419.6,352.49 2408.9,344.73 2398,341 2356.5,326.8 2236.5,324.1 2165.8,323.79"]; default7 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1919 358.5 1919 377.5 2305 377.5 2305 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2112 365.5 0 370 68 -\"/stornext/HPCScratch/PapenfussLab/reference_genomes/bowtie2/GRCm38\" ", fillcolor="#D5AEFC", height=0.27778, label="\"/stornext/HPCScratch/PapenfussLab/reference_genomes/bowtie2/GRCm38\"", pos="2112,368", rects="1919,358.5,2305,377.5", width=5.3611]; default7 -> "align-to-mouse" [_draw_="c 7 -#000000 B 4 2112 358.71 2112 353.59 2112 346.85 2112 340.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2114.45 340.78 2112 333.78 2109.55 340.78 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2126.5 343.6 0 29 7 -bt2-idx ", label="bt2-idx", lp="2126.5,345.5", pos="e,2112,332.27 2112,358.71 2112,353.59 2112,346.85 2112,340.67"]; default8 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 2375 456.5 2375 475.5 2413 475.5 2413 456.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2394 463.5 0 22 4 -\"PE\" ", fillcolor="#D5AEFC", height=0.27778, label="\"PE\"", pos="2394,466", rects="2375,456.5,2413,475.5", width=0.52778]; default8 -> trim [_draw_="c 7 -#000000 B 7 2386.77 456.78 2379.77 449.24 2368.56 438.18 2357 431 2351.42 427.54 2345.03 424.57 2338.87 422.14 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2340.11 419.99 2332.7 419.86 2338.42 424.58 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2390.5 433.6 0 43 8 -end_mode ", label=end_mode, lp="2390.5,435.5", pos="e,2331.3,419.34 2386.8,456.78 2379.8,449.24 2368.6,438.18 2357,431 2351.4,427.54 2345,424.57 2338.9,422.14"]; default9 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 706 223.5 706 242.5 1246 242.5 1246 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 976 230.5 0 524 102 -\"/wehisan/bioinf/bioinf-data/Papenfuss_lab/projects/reference_genomes/human_\ new/no_alt/hg38_no_alt.fa\" ", fillcolor="#D5AEFC", height=0.27778, label="\"/wehisan/bioinf/bioinf-data/Papenfuss_lab/projects/reference_genomes/human_new/no_alt/hg38_no_alt.fa\"", pos="976,233", rects="706,223.5,1246,242.5", width=7.5]; default9 -> "gridss-human" [_draw_="c 7 -#000000 B 4 945.18 223.5 920.39 216.67 885.43 207.03 858.75 199.68 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 859.62 197.38 852.22 197.88 858.31 202.1 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 959 208.6 0 96 18 -REFERENCE_SEQUENCE ", label=REFERENCE_SEQUENCE, lp="959,210.5", pos="e,850.76,197.48 945.18,223.5 920.39,216.67 885.43,207.03 858.75,199.68"]; }