Workflow: conditional_bamindex.cwl

Fetched 2023-01-12 13:05:06 GMT
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Inputs

ID Type Title Doc
bam File
thread_count Long

Steps

ID Runs Label Doc
empty_sqlite
../../tools/touch.cwl (CommandLineTool)
format_sqlite
../../tools/emit_file_format.cwl (ExpressionTool)
samtools_index
../../tools/samtools_index.cwl (CommandLineTool)

Outputs

ID Type Label Doc
output File
sqlite File
Permalink: https://w3id.org/cwl/view/git/51d4f5c34d2cc0ed535e2382c4e458aeefd308de/workflows/bamfastq_align/conditional_bamindex.cwl