digraph workflow { graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 278 605.5 278 605.5 0 ", bb="0,0,605.5,278", bgcolor="#eeeeee", clusterrank=local, color=black, dpi=96, fontsize=10, labeljust=left, nodesep=0.05, ranksep=0.22, xdotversion=1.7 ]; node [color=black, fillcolor=lightgoldenrodyellow, fontcolor=black, fontname=Helvetica, fontsize=10, height=0, label="\N", shape=record, style=filled, width=0 ]; edge [arrowsize=0.7, color=black, fontcolor=black, fontname=Helvetica, fontsize=8 ]; subgraph cluster_inputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 53.5 215 53.5 270 351.5 270 351.5 215 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 103.5 258 0 84 15 -Workflow Inputs ", bb="53.5,215,351.5,270", label="Workflow Inputs", lheight=0.15, lp="103.5,260.5", lwidth=1.17, rank=same, style=dashed ]; covariance_models [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 127 223.5 127 242.5 238 242.5 238 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 182.5 230.5 0 95 17 -covariance_models ", fillcolor="#94DDF4", height=0.27778, label=covariance_models, pos="182.5,233", rects="127,223.5,238,242.5", width=1.5417]; query_sequences [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 242 223.5 242 242.5 343 242.5 343 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 292.5 230.5 0 85 15 -query_sequences ", fillcolor="#94DDF4", height=0.27778, label=query_sequences, pos="292.5,233", rects="242,223.5,343,242.5", width=1.4028]; clan_info [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 62 223.5 62 242.5 123 242.5 123 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 92.5 230.5 0 45 9 -clan_info ", fillcolor="#94DDF4", height=0.27778, label=clan_info, pos="92.5,233", rects="62,223.5,123,242.5", width=0.84722]; } subgraph cluster_outputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 100.5 8 100.5 63 208.5 63 208.5 8 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 154.5 15 0 92 16 -Workflow Outputs ", bb="100.5,8,208.5,63", label="Workflow Outputs", labelloc=b, lheight=0.15, lp="154.5,17.5", lwidth=1.28, rank=same, style=dashed ]; matches [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 125 35.5 125 54.5 184 54.5 184 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 154.5 42.5 0 43 7 -matches ", fillcolor="#94DDF4", height=0.27778, label=matches, pos="154.5,45", rects="125,35.5,184,54.5", width=0.81944]; } cmsearch [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 192 170.5 192 189.5 489 189.5 489 170.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 340.5 177.5 0 281 54 -search sequence(s) against a covariance model database ", height=0.27778, label="search sequence(s) against a covariance model database", pos="340.5,180", rects="192,170.5,489,189.5", width=4.125]; covariance_models -> cmsearch [_draw_="c 7 -#000000 B 7 176.53 223.72 171.85 216.15 167.11 205.07 173.5 198 176.11 195.11 184.9 192.69 197.18 190.66 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 197.19 193.14 203.75 189.68 196.47 188.29 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 232.5 200.6 0 118 25 -covariance_model_database ", label=covariance_model_database, lp="232.5,202.5", pos="e,205.25,189.45 176.53,223.72 171.85,216.15 167.11,205.07 173.5,198 176.11,195.11 184.9,192.69 197.18,190.66"]; query_sequences -> cmsearch [_draw_="c 7 -#000000 B 7 290.92 223.57 290.02 216.1 289.99 205.27 295.5 198 296.52 196.65 297.66 195.41 298.9 194.27 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 300.27 196.3 304.52 190.22 297.41 192.32 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 332 200.6 0 73 15 -query_sequences ", label=query_sequences, lp="332,202.5", pos="e,305.75,189.34 290.92,223.57 290.02,216.1 289.99,205.27 295.5,198 296.52,196.65 297.66,195.41 298.9,194.27"]; remove_overlaps [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 0 80.5 0 99.5 309 99.5 309 80.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 154.5 87.5 0 293 59 -remove lower scoring overlaps from cmsearch --tblout files. ", height=0.27778, label="remove lower scoring overlaps from cmsearch --tblout files.", pos="154.5,90", rects="0,80.5,309,99.5", width=4.2917]; clan_info -> remove_overlaps [_draw_="c 7 -#000000 B 4 96.19 223.6 106.3 200.62 134.51 136.45 147.63 106.62 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 149.72 107.96 150.3 100.56 145.23 105.98 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 162 155.6 0 69 16 -clan_information ", label=clan_information, lp="162,157.5", pos="e,150.9,99.177 96.193,223.6 106.3,200.62 134.51,136.45 147.63,106.62"]; concatenate_matches [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 159.5 125.5 159.5 144.5 283.5 144.5 283.5 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 221.5 132.5 0 108 19 -concatenate_matches ", height=0.27778, label=concatenate_matches, pos="221.5,135", rects="159.5,125.5,283.5,144.5", width=1.7222]; cmsearch -> concatenate_matches [_draw_="c 7 -#000000 B 4 316.99 170.5 298.65 163.88 273.01 154.61 252.92 147.35 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 253.8 145.07 246.39 144.99 252.14 149.68 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 301.5 155.6 0 18 5 -files ", label=files, lp="301.5,157.5", pos="e,244.96,144.48 316.99,170.5 298.65,163.88 273.01,154.61 252.92,147.35"]; concatenate_matches -> remove_overlaps [_draw_="c 7 -#000000 B 4 208.26 125.5 198.72 119.38 185.66 111 174.8 104.03 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 176.2 102.01 168.98 100.3 173.55 106.14 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 234 110.6 0 79 16 -cmsearch_matches ", label=cmsearch_matches, lp="234,112.5", pos="e,167.71,99.478 208.26,125.5 198.72,119.38 185.66,111 174.8,104.03"]; remove_overlaps -> matches [_draw_="c 7 -#000000 B 4 154.5 80.71 154.5 75.59 154.5 68.85 154.5 62.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 156.95 62.78 154.5 55.78 152.05 62.78 ", pos="e,154.5,54.265 154.5,80.709 154.5,75.593 154.5,68.848 154.5,62.666"]; default1 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 359.5 223.5 359.5 242.5 395.5 242.5 395.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 377.5 230.5 0 20 4 -true ", fillcolor="#D5AEFC", height=0.27778, label=true, pos="377.5,233", rects="359.5,223.5,395.5,242.5", width=0.5]; default1 -> cmsearch [_draw_="c 7 -#000000 B 7 377.34 223.69 376.81 216.29 375.05 205.51 369.5 198 368.64 196.84 367.68 195.74 366.64 194.71 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 368.24 192.85 361.23 190.42 365.19 196.69 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 395.5 200.6 0 42 8 -only_hmm ", label=only_hmm, lp="395.5,202.5", pos="e,360.04,189.48 377.34,223.69 376.81,216.29 375.05,205.51 369.5,198 368.64,196.84 367.68,195.74 366.64,194.71"]; default2 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 408 223.5 408 242.5 449 242.5 449 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 428.5 230.5 0 25 4 -1000 ", fillcolor="#D5AEFC", height=0.27778, label=1000, pos="428.5,233", rects="408,223.5,449,242.5", width=0.56944]; default2 -> cmsearch [_draw_="c 7 -#000000 B 7 428.09 223.77 427.24 216 424.75 204.59 417.5 198 415.7 196.36 413.77 194.87 411.75 193.51 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 413.14 191.48 405.85 190.13 410.71 195.73 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 463 200.6 0 77 17 -search_space_size ", label=search_space_size, lp="463,202.5", pos="e,404.54,189.38 428.09,223.77 427.24,216 424.75,204.59 417.5,198 415.7,196.36 413.77,194.87 411.75,193.51"]; default3 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 496.5 223.5 496.5 242.5 532.5 242.5 532.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 514.5 230.5 0 20 4 -true ", fillcolor="#D5AEFC", height=0.27778, label=true, pos="514.5,233", rects="496.5,223.5,532.5,242.5", width=0.5]; default3 -> cmsearch [_draw_="c 7 -#000000 B 7 513.98 223.56 513.02 215.64 510.26 204.13 502.5 198 499.55 195.68 495.48 193.65 490.54 191.89 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 491.57 189.64 484.16 189.93 490.13 194.33 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 557 200.6 0 97 22 -omit_alignment_section ", label=omit_alignment_section, lp="557,202.5", pos="e,482.71,189.49 513.98,223.56 513.02,215.64 510.26,204.13 502.5,198 499.55,195.68 495.48,193.65 490.54,191.89"]; }