digraph workflow { graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 413 472 413 472 0 ", bb="0,0,472,413", bgcolor="#eeeeee", clusterrank=local, color=black, dpi=96, fontsize=10, labeljust=left, nodesep=0.05, ranksep=0.22, xdotversion=1.7 ]; node [color=black, fillcolor=lightgoldenrodyellow, fontcolor=black, fontname=Helvetica, fontsize=10, height=0, label="\N", shape=record, style=filled, width=0 ]; edge [arrowsize=0.7, color=black, fontcolor=black, fontname=Helvetica, fontsize=8 ]; subgraph cluster_inputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 90 350 90 405 408 405 408 350 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 140 393 0 84 15 -Workflow Inputs ", bb="90,350,408,405", label="Workflow Inputs", lheight=0.15, lp="140,395.5", lwidth=1.17, rank=same, style=dashed ]; model [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 214.5 358.5 214.5 377.5 399.5 377.5 399.5 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 307 365.5 0 169 33 -rRNA protein model to search with ", fillcolor="#94DDF4", height=0.27778, label="rRNA protein model to search with", pos="307,368", rects="214.5,358.5,399.5,377.5", width=2.5694]; indexed_sequences [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 98 358.5 98 377.5 210 377.5 210 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 154 365.5 0 96 17 -indexed_sequences ", fillcolor="#94DDF4", height=0.27778, label=indexed_sequences, pos="154,368", rects="98,358.5,210,377.5", width=1.5556]; } subgraph cluster_outputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 168 8 168 63 436 63 436 8 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 222 15 0 92 16 -Workflow Outputs ", bb="168,8,436,63", label="Workflow Outputs", labelloc=b, lheight=0.15, lp="222,17.5", lwidth=1.28, rank=same, style=dashed ]; matching_sequences [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 176.5 35.5 176.5 54.5 295.5 54.5 295.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 236 42.5 0 103 18 -matching_sequences ", fillcolor="#94DDF4", height=0.27778, label=matching_sequences, pos="236,45", rects="176.5,35.5,295.5,54.5", width=1.6528]; hmmer_search_results [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 300 35.5 300 54.5 428 54.5 428 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 364 42.5 0 112 20 -hmmer_search_results ", fillcolor="#94DDF4", height=0.27778, label=hmmer_search_results, pos="364,45", rects="300,35.5,428,54.5", width=1.7778]; } hmmsearch [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 186.5 305.5 186.5 324.5 427.5 324.5 427.5 305.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 307 312.5 0 225 45 -search profile(s) against a sequence database ", height=0.27778, label="search profile(s) against a sequence database", pos="307,315", rects="186.5,305.5,427.5,324.5", width=3.3472]; model -> hmmsearch [_draw_="c 7 -#000000 B 4 307 358.58 307 351.52 307 341.24 307 332.55 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 309.45 332.78 307 325.78 304.55 332.78 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 334.5 335.6 0 55 12 -hmm_profiles ", label=hmm_profiles, lp="334.5,337.5", pos="e,307,324.26 307,358.58 307,351.52 307,341.24 307,332.55"]; fetch_aligned_sequences [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 20 170.5 20 189.5 272 189.5 272 170.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 146 177.5 0 236 46 -extract by names from an indexed sequence file ", height=0.27778, label="extract by names from an indexed sequence file", pos="146,180", rects="20,170.5,272,189.5", width=3.5]; indexed_sequences -> fetch_aligned_sequences [_draw_="c 7 -#000000 B 10 154 358.7 154 348.6 154 331.05 154 316 154 316 154 316 154 224 154 215.17 152.35 205.5 150.55 197.56 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 152.97 197.15 148.9 190.95 148.22 198.33 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 195 268.1 0 82 17 -indexed_sequences ", label=indexed_sequences, lp="195,270", pos="e,148.53,189.48 154,358.7 154,348.6 154,331.05 154,316 154,316 154,316 154,224 154,215.17 152.35,205.5 150.55,197.56"]; indexed_sequences -> hmmsearch [_draw_="c 7 -#000000 B 7 172.73 358.52 189.57 351.11 215.1 340.41 238 333 245.15 330.68 252.81 328.51 260.33 326.53 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 260.76 328.95 266.94 324.85 259.55 324.21 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 272 335.6 0 68 14 -sequence_query ", label=sequence_query, lp="272,337.5", pos="e,268.4,324.48 172.73,358.52 189.57,351.11 215.1,340.41 238,333 245.15,330.68 252.81,328.51 260.33,326.53"]; reformat_matches [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 182.5 125.5 182.5 144.5 289.5 144.5 289.5 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 236 132.5 0 91 16 -reformat_matches ", height=0.27778, label=reformat_matches, pos="236,135", rects="182.5,125.5,289.5,144.5", width=1.4861]; fetch_aligned_sequences -> reformat_matches [_draw_="c 7 -#000000 B 4 163.78 170.5 177.22 164.09 195.84 155.19 210.81 148.04 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 211.63 150.36 216.89 145.13 209.52 145.94 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 223 155.6 0 46 9 -sequences ", label=sequences, lp="223,157.5", pos="e,218.26,144.48 163.78,170.5 177.22,164.09 195.84,155.19 210.81,148.04"]; extract_coordinates [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 193.5 215.5 193.5 234.5 306.5 234.5 306.5 215.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 250 222.5 0 97 19 -extract_coordinates ", height=0.27778, label=extract_coordinates, pos="250,225", rects="193.5,215.5,306.5,234.5", width=1.5694]; extract_coordinates -> fetch_aligned_sequences [_draw_="c 7 -#000000 B 4 229.45 215.5 213.64 208.97 191.62 199.86 174.16 192.64 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 175.31 190.47 167.9 190.06 173.44 194.99 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 222 200.6 0 28 5 -names ", label=names, lp="222,202.5", pos="e,166.5,189.48 229.45,215.5 213.64,208.97 191.62,199.86 174.16,192.64"]; sort_matches [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 194.5 80.5 194.5 99.5 277.5 99.5 277.5 80.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 236 87.5 0 67 12 -sort_matches ", height=0.27778, label=sort_matches, pos="236,90", rects="194.5,80.5,277.5,99.5", width=1.1528]; sort_matches -> matching_sequences [_draw_="c 7 -#000000 B 4 236 80.71 236 75.59 236 68.85 236 62.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 238.45 62.78 236 55.78 233.55 62.78 ", pos="e,236,54.265 236,80.709 236,75.593 236,68.848 236,62.666"]; reformat_matches -> sort_matches [_draw_="c 7 -#000000 B 4 236 125.71 236 120.59 236 113.85 236 107.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 238.45 107.78 236 100.78 233.55 107.78 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 259 110.6 0 46 9 -sequences ", label=sequences, lp="259,112.5", pos="e,236,99.265 236,125.71 236,120.59 236,113.85 236,107.67"]; extract_coord_lines [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 243 260.5 243 279.5 355 279.5 355 260.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 299 267.5 0 96 19 -extract_coord_lines ", height=0.27778, label=extract_coord_lines, pos="299,270", rects="243,260.5,355,279.5", width=1.5556]; extract_coord_lines -> extract_coordinates [_draw_="c 7 -#000000 B 4 289.55 260.71 282.77 254.76 273.48 246.61 265.61 239.7 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 267.43 238.04 260.56 235.26 264.2 241.72 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 313 245.6 0 68 16 -coordinate_lines ", label=coordinate_lines, lp="313,247.5", pos="e,259.42,234.27 289.55,260.71 282.77,254.76 273.48,246.61 265.61,239.7"]; hmmsearch -> hmmer_search_results [_draw_="c 7 -#000000 B 10 332.83 305.63 347.91 298.94 364 287.86 364 271 364 271 364 271 364 89 364 80.31 364 70.63 364 62.65 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 366.45 62.76 364 55.76 361.55 62.76 ", pos="e,364,54.243 332.83,305.63 347.91,298.94 364,287.86 364,271 364,271 364,271 364,89 364,80.308 364,70.627 364,62.655"]; hmmsearch -> extract_coord_lines [_draw_="c 7 -#000000 B 4 305.46 305.71 304.48 300.47 303.19 293.53 302.02 287.24 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 304.5 287.19 300.81 280.75 299.69 288.08 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 323 290.6 0 38 7 -summary ", label=summary, lp="323,292.5", pos="e,300.54,279.27 305.46,305.71 304.48,300.47 303.19,293.53 302.02,287.24"]; default1 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 0 215.5 0 234.5 36 234.5 36 215.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 18 222.5 0 20 4 -true ", fillcolor="#D5AEFC", height=0.27778, label=true, pos="18,225", rects="0,215.5,36,234.5", width=0.5]; default1 -> fetch_aligned_sequences [_draw_="c 7 -#000000 B 7 16.91 215.58 16.67 209.84 17.44 202.48 22 198 24.28 195.75 27.68 193.8 31.91 192.1 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 32.47 194.5 38.33 189.96 30.91 189.85 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 86 200.6 0 128 27 -names_contain_subseq_coords ", label=names_contain_subseq_coords, lp="86,202.5", pos="e,39.764,189.48 16.912,215.58 16.673,209.84 17.442,202.48 22,198 24.282,195.75 27.682,193.8 31.913,192.1"]; default2 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 276.5 170.5 276.5 189.5 305.5 189.5 305.5 170.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 291 177.5 0 13 2 -80 ", fillcolor="#D5AEFC", height=0.27778, label=80, pos="291,180", rects="276.5,170.5,305.5,189.5", width=0.40278]; default2 -> reformat_matches [_draw_="c 7 -#000000 B 4 280.13 170.5 272.53 164.56 262.2 156.48 253.44 149.64 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 255.06 147.79 248.04 145.41 252.04 151.65 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 303 155.6 0 68 14 -minimum_length ", label=minimum_length, lp="303,157.5", pos="e,246.84,144.48 280.13,170.5 272.53,164.56 262.2,156.48 253.44,149.64"]; default3 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 416 358.5 416 377.5 472 377.5 472 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 444 365.5 0 40 8 -\"1.0E-5\" ", fillcolor="#D5AEFC", height=0.27778, label="\"1.0E-5\"", pos="444,368", rects="416,358.5,472,377.5", width=0.77778]; default3 -> hmmsearch [_draw_="c 7 -#000000 B 7 427.42 358.53 421.65 355.7 415.09 352.6 409 350 388.12 341.09 364.05 332.98 344.55 326.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 345.34 324.59 337.93 324.88 343.91 329.28 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 411.5 335.6 0 49 11 -e_threshold ", label=e_threshold, lp="411.5,337.5", pos="e,336.49,324.44 427.42,358.53 421.65,355.7 415.09,352.6 409,350 388.12,341.09 364.05,332.98 344.55,326.91"]; }