Workflow: tt_hmmsearch_wnode.cwl

Fetched 2023-01-12 15:37:06 GMT
children parents
Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
lds2 File
seqids File
hmm_path Directory
hmms_tab File (Optional)
proteins File
asn_cache Directory
scatter_gather_nchunks String

Steps

ID Runs Label Doc
split_jobs
../split_jobs/split.cwl (CommandLineTool)
cwl split wrapper
collect_hmm_results
../split_jobs/cat_array_of_files.cwl (CommandLineTool)
file concatenation
hmmsearch_create_jobs
../progs/hmmsearch_create_jobs.cwl (CommandLineTool)
hmmsearch_create_jobs
hmmsearch_wnode_qdump hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather

Outputs

ID Type Label Doc
jobs File
workdir Directory
hmm_hits File
Permalink: https://w3id.org/cwl/view/git/83ef15482f405bc3d24f88cbf405ceffea9b3023/task_types/tt_hmmsearch_wnode.cwl