Workflow: hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather
Fetched 2023-01-15 00:32:57 GMT
Verified with cwltool version 3.1.20221201130942
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- |
- Default Values
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/9ff3e17888a15f4691ba82380472317214e20a1c/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| lds2 | File | ||
| workdir | Directory | ||
| hmm_path | Directory | ||
| hmms_tab | File (Optional) | ||
| proteins | File | ||
| asn_cache | Directory | ||
| input_jobs | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| gpx_qdump |
../progs/gpx_qdump.cwl
(CommandLineTool)
|
gpx_qdump | |
| hmmsearch_wnode |
../progs/hmmsearch_wnode.cwl
(CommandLineTool)
|
hmmsearch_wnode |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output | File |
Permalink:
https://w3id.org/cwl/view/git/9ff3e17888a15f4691ba82380472317214e20a1c/task_types/tt_hmmsearch_wnode_plus_qdump.cwl
