digraph workflow { graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 278 3038 278 3038 0 ", bb="0,0,3038,278", bgcolor="#eeeeee", clusterrank=local, color=black, dpi=96, fontsize=10, labeljust=left, nodesep=0.05, ranksep=0.22, xdotversion=1.7 ]; node [color=black, fillcolor=lightgoldenrodyellow, fontcolor=black, fontname=Helvetica, fontsize=10, height=0, label="\N", shape=record, style=filled, width=0 ]; edge [arrowsize=0.7, color=black, fontcolor=black, fontname=Helvetica, fontsize=8 ]; subgraph cluster_inputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 1565 215 1565 270 2077 270 2077 215 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 1615 258 0 84 15 -Workflow Inputs ", bb="1565,215,2077,270", label="Workflow Inputs", lheight=0.15, lp="1615,260.5", lwidth=1.17, rank=same, style=dashed ]; chrom_sizes [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1991.5 223.5 1991.5 242.5 2068.5 242.5 2068.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2030 230.5 0 61 11 -chrom_sizes ", fillcolor="#94DDF4", height=0.27778, label=chrom_sizes, pos="2030,233", rects="1991.5,223.5,2068.5,242.5", width=1.0694]; 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species [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1573.5 223.5 1573.5 242.5 1626.5 242.5 1626.5 223.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1600 230.5 0 37 7 -species ", fillcolor="#94DDF4", height=0.27778, label=species, pos="1600,233", rects="1573.5,223.5,1626.5,242.5", width=0.73611]; } subgraph cluster_outputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 3030 63 3030 8 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ", bb="8,8,3030,63", label="Workflow Outputs", labelloc=b, lheight=0.15, lp="62,17.5", lwidth=1.28, rank=same, style=dashed ]; b1_sorted_unmapped_fastq [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1956 35.5 1956 54.5 2108 54.5 2108 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2032 42.5 0 136 24 -b1_sorted_unmapped_fastq ", fillcolor="#94DDF4", height=0.27778, label=b1_sorted_unmapped_fastq, pos="2032,45", rects="1956,35.5,2108,54.5", width=2.1111]; b1_trimx2_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2112 35.5 2112 54.5 2220 54.5 2220 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2166 42.5 0 92 17 -b1_trimx2_metrics ", fillcolor="#94DDF4", height=0.27778, label=b1_trimx2_metrics, pos="2166,45", rects="2112,35.5,2220,54.5", width=1.5]; output_neg_bw [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2723.5 35.5 2723.5 54.5 2814.5 54.5 2814.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2769 42.5 0 75 13 -output_neg_bw ", fillcolor="#94DDF4", height=0.27778, label=output_neg_bw, pos="2769,45", rects="2723.5,35.5,2814.5,54.5", width=1.2639]; b1_trimx2_fastq [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2224 35.5 2224 54.5 2320 54.5 2320 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2272 42.5 0 80 15 -b1_trimx2_fastq ", fillcolor="#94DDF4", height=0.27778, label=b1_trimx2_fastq, pos="2272,45", rects="2224,35.5,2320,54.5", width=1.3333]; b1_output_rmdup_sorted_bam [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2324.5 35.5 2324.5 54.5 2489.5 54.5 2489.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2407 42.5 0 149 26 -b1_output_rmdup_sorted_bam ", fillcolor="#94DDF4", height=0.27778, label=b1_output_rmdup_sorted_bam, pos="2407,45", rects="2324.5,35.5,2489.5,54.5", width=2.2917]; b1_trimx2_fastqc_stats [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2493.5 35.5 2493.5 54.5 2624.5 54.5 2624.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2559 42.5 0 115 22 -b1_trimx2_fastqc_stats ", fillcolor="#94DDF4", height=0.27778, label=b1_trimx2_fastqc_stats, pos="2559,45", rects="2493.5,35.5,2624.5,54.5", width=1.8194]; b1_output_barcodecollapsese_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2818.5 35.5 2818.5 54.5 3021.5 54.5 3021.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2920 42.5 0 187 35 -b1_output_barcodecollapsese_metrics ", fillcolor="#94DDF4", height=0.27778, label=b1_output_barcodecollapsese_metrics, pos="2920,45", rects="2818.5,35.5,3021.5,54.5", width=2.8194]; b1_mapgenome_mapped_to_genome [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 144 35.5 144 54.5 344 54.5 344 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 244 42.5 0 184 29 -b1_mapgenome_mapped_to_genome ", fillcolor="#94DDF4", height=0.27778, label=b1_mapgenome_mapped_to_genome, pos="244,45", rects="144,35.5,344,54.5", width=2.7778]; b1_trimx1_fastqc_report [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 348 35.5 348 54.5 484 54.5 484 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 416 42.5 0 120 23 -b1_trimx1_fastqc_report ", fillcolor="#94DDF4", height=0.27778, label=b1_trimx1_fastqc_report, pos="416,45", rects="348,35.5,484,54.5", width=1.8889]; b1_mapgenome_stats [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 488.5 35.5 488.5 54.5 613.5 54.5 613.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 551 42.5 0 109 18 -b1_mapgenome_stats ", fillcolor="#94DDF4", height=0.27778, label=b1_mapgenome_stats, pos="551,45", rects="488.5,35.5,613.5,54.5", width=1.7361]; b1_maprepeats_star_settings [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 617.5 35.5 617.5 54.5 778.5 54.5 778.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 698 42.5 0 145 27 -b1_maprepeats_star_settings ", fillcolor="#94DDF4", height=0.27778, label=b1_maprepeats_star_settings, pos="698,45", rects="617.5,35.5,778.5,54.5", width=2.2361]; output_pos_bw [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2629 35.5 2629 54.5 2719 54.5 2719 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2674 42.5 0 74 13 -output_pos_bw ", fillcolor="#94DDF4", height=0.27778, label=output_pos_bw, pos="2674,45", rects="2629,35.5,2719,54.5", width=1.25]; b1_mapgenome_star_settings [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 783 35.5 783 54.5 947 54.5 947 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 865 42.5 0 148 26 -b1_mapgenome_star_settings ", fillcolor="#94DDF4", height=0.27778, label=b1_mapgenome_star_settings, pos="865,45", rects="783,35.5,947,54.5", width=2.2778]; b1_trimx1_metrics [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 951 35.5 951 54.5 1059 54.5 1059 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1005 42.5 0 92 17 -b1_trimx1_metrics ", fillcolor="#94DDF4", height=0.27778, label=b1_trimx1_metrics, pos="1005,45", rects="951,35.5,1059,54.5", width=1.5]; b1_trimx2_fastqc_report [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1063 35.5 1063 54.5 1199 54.5 1199 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1131 42.5 0 120 23 -b1_trimx2_fastqc_report ", fillcolor="#94DDF4", height=0.27778, label=b1_trimx2_fastqc_report, pos="1131,45", rects="1063,35.5,1199,54.5", width=1.8889]; b1_maprepeats_stats [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1203 35.5 1203 54.5 1325 54.5 1325 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1264 42.5 0 106 19 -b1_maprepeats_stats ", fillcolor="#94DDF4", height=0.27778, label=b1_maprepeats_stats, pos="1264,45", rects="1203,35.5,1325,54.5", width=1.6944]; b1_maprepeats_mapped_to_genome [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1329.5 35.5 1329.5 54.5 1526.5 54.5 1526.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1428 42.5 0 181 30 -b1_maprepeats_mapped_to_genome ", fillcolor="#94DDF4", height=0.27778, label=b1_maprepeats_mapped_to_genome, pos="1428,45", rects="1329.5,35.5,1526.5,54.5", width=2.7361]; b1_trimx1_fastqc_stats [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1530.5 35.5 1530.5 54.5 1661.5 54.5 1661.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1596 42.5 0 115 22 -b1_trimx1_fastqc_stats ", fillcolor="#94DDF4", height=0.27778, label=b1_trimx1_fastqc_stats, pos="1596,45", rects="1530.5,35.5,1661.5,54.5", width=1.8194]; b1_trimx1_fastq [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1666 35.5 1666 54.5 1762 54.5 1762 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1714 42.5 0 80 15 -b1_trimx1_fastq ", fillcolor="#94DDF4", height=0.27778, label=b1_trimx1_fastq, pos="1714,45", rects="1666,35.5,1762,54.5", width=1.3333]; b1_demuxed_fastq_r1 [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 35.5 16 54.5 140 54.5 140 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 78 42.5 0 108 19 -b1_demuxed_fastq_r1 ", fillcolor="#94DDF4", height=0.27778, label=b1_demuxed_fastq_r1, pos="78,45", rects="16,35.5,140,54.5", width=1.7222]; b1_output_pre_rmdup_sorted_bam [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1766 35.5 1766 54.5 1952 54.5 1952 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1859 42.5 0 170 30 -b1_output_pre_rmdup_sorted_bam ", fillcolor="#94DDF4", height=0.27778, label=b1_output_pre_rmdup_sorted_bam, pos="1859,45", rects="1766,35.5,1952,54.5", width=2.5833]; } make_bigwigs [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2302 80.5 2302 99.5 2388 99.5 2388 80.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2345 87.5 0 70 12 -make_bigwigs ", height=0.27778, label=make_bigwigs, pos="2345,90", rects="2302,80.5,2388,99.5", width=1.1944]; chrom_sizes -> make_bigwigs [_draw_="c 7 -#000000 B 4 2048.76 223.6 2102.49 199.55 2257.04 130.37 2318.92 102.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2319.57 105.07 2324.96 99.97 2317.57 100.6 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2228.5 155.6 0 47 10 -chromsizes ", label=chromsizes, lp="2228.5,157.5", pos="e,2326.3,99.354 2048.8,223.6 2102.5,199.55 2257,130.37 2318.9,102.67"]; b1_trim_and_map [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 1544 125.5 1544 144.5 1648 144.5 1648 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1596 132.5 0 88 15 -b1_trim_and_map ", fillcolor="#F3CEA1", height=0.27778, label=b1_trim_and_map, pos="1596,135", rects="1544,125.5,1648,144.5", width=1.4444]; repeatElementGenomeDir -> b1_trim_and_map [_draw_="c 7 -#000000 B 7 1760.3 223.71 1760.77 205.48 1760.78 162.74 1751 153 1744.16 146.19 1696.8 141.69 1656.21 139.04 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1656.59 136.61 1649.45 138.61 1656.28 141.5 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1812.5 178.1 0 107 22 -repeatElementGenomeDir ", label=repeatElementGenomeDir, lp="1812.5,180", pos="e,1647.9,138.52 1760.3,223.71 1760.8,205.48 1760.8,162.74 1751,153 1744.2,146.19 1696.8,141.69 1656.2,139.04"]; read -> b1_trim_and_map [_draw_="c 7 -#000000 B 7 1860.43 223.68 1868.19 210.64 1880.13 185.32 1867 170 1853.49 154.24 1731.65 144.13 1656.01 139.32 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1656.59 136.9 1649.45 138.91 1656.28 141.79 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1895 178.1 0 46 10 -a_adapters ", label=a_adapters, lp="1895,180", pos="e,1647.9,138.81 1860.4,223.68 1868.2,210.64 1880.1,185.32 1867,170 1853.5,154.24 1731.7,144.13 1656,139.32"]; demultiplex [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 1425.5 170.5 1425.5 189.5 1500.5 189.5 1500.5 170.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1463 177.5 0 59 11 -demultiplex ", fillcolor="#F3CEA1", height=0.27778, label=demultiplex, pos="1463,180", rects="1425.5,170.5,1500.5,189.5", width=1.0417]; read -> demultiplex [_draw_="c 7 -#000000 B 10 1846.3 223.77 1842.26 220.45 1837.21 216.95 1832 215 1767.91 190.96 1593.01 197.7 1525 190 1519.63 189.39 1514 \ 188.68 1508.43 187.93 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1509.1 185.55 1501.83 187.01 1508.42 190.4 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1808.5 200.6 0 19 4 -read ", label=read, lp="1808.5,202.5", pos="e,1500.3,186.81 1846.3,223.77 1842.3,220.45 1837.2,216.95 1832,215 1767.9,190.96 1593,197.7 1525,190 1519.6,189.39 1514,188.68 1508.4,\ 187.93"]; speciesGenomeDir -> b1_trim_and_map [_draw_="c 7 -#000000 B 7 1933.74 223.83 1934.47 210.52 1933.77 184.25 1919 170 1900.5 152.15 1744.45 142.48 1656.2 138.39 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1656.5 135.95 1649.39 138.08 1656.28 140.85 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1969 178.1 0 78 16 -speciesGenomeDir ", label=speciesGenomeDir, lp="1969,180", pos="e,1647.9,138.01 1933.7,223.83 1934.5,210.52 1933.8,184.25 1919,170 1900.5,152.15 1744.4,142.48 1656.2,138.39"]; dataset -> demultiplex [_draw_="c 7 -#000000 B 10 1644.64 223.64 1639.41 220.47 1633.11 217.11 1627 215 1604.48 207.22 1597.39 211.5 1574 207 1550.66 202.51 1524.8 \ 196.52 1503.92 191.41 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1504.73 189.09 1497.35 189.79 1503.56 193.85 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1590 200.6 0 32 7 -dataset ", label=dataset, lp="1590,202.5", pos="e,1495.9,189.43 1644.6,223.64 1639.4,220.47 1633.1,217.11 1627,215 1604.5,207.22 1597.4,211.5 1574,207 1550.7,202.51 1524.8,196.52 \ 1503.9,191.41"]; b1_trim_and_map -> b1_sorted_unmapped_fastq [_draw_="c 7 -#000000 B 10 1618.5 125.54 1660.72 109.82 1750.51 77.12 1783 71 1856.9 57.08 1877.42 72.62 1952 63 1964.47 61.39 1977.89 58.86 \ 1990.1 56.24 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1990.56 58.65 1996.86 54.75 1989.5 53.86 ", pos="e,1998.3,54.419 1618.5,125.54 1660.7,109.82 1750.5,77.118 1783,71 1856.9,57.085 1877.4,72.624 1952,63 1964.5,61.391 1977.9,58.86 \ 1990.1,56.238"]; b1_trim_and_map -> b1_trimx2_metrics [_draw_="c 7 -#000000 B 13 1627.6 125.51 1653.08 118.65 1689.86 108.73 1722 100 1769.13 87.19 1779.69 78.19 1828 71 1951.14 52.67 1985.03 \ 82.45 2108 63 2116.63 61.64 2125.78 59.36 2134.2 56.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2134.9 59.26 2140.88 54.87 2133.47 54.57 ", pos="e,2142.3,54.432 1627.6,125.51 1653.1,118.65 1689.9,108.73 1722,100 1769.1,87.193 1779.7,78.193 1828,71 1951.1,52.666 1985,82.446 \ 2108,63 2116.6,61.636 2125.8,59.361 2134.2,56.912"]; b1_trim_and_map -> b1_trimx2_fastq [_draw_="c 7 -#000000 B 13 1643.93 125.52 1676.15 119.42 1719.43 110.45 1757 100 1795.86 89.19 1803.27 77.95 1843 71 1925.54 56.56 2137.39 \ 77.06 2220 63 2227.63 61.7 2235.68 59.51 2243.1 57.12 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2243.58 59.54 2249.42 54.97 2242 54.9 ", pos="e,2250.9,54.481 1643.9,125.52 1676.2,119.42 1719.4,110.45 1757,100 1795.9,89.192 1803.3,77.952 1843,71 1925.5,56.557 2137.4,77.061 \ 2220,63 2227.6,61.701 2235.7,59.505 2243.1,57.116"]; b1_trim_and_map -> b1_output_rmdup_sorted_bam [_draw_="c 7 -#000000 B 13 1647.97 128.54 1686.9 123.54 1741.12 114.65 1787 100 1818.69 89.88 1823.45 77.85 1856 71 1906.57 60.35 2269.62 \ 68.48 2321 63 2334.91 61.52 2349.92 58.91 2363.45 56.17 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2363.82 58.6 2370.17 54.77 2362.82 53.8 ", pos="e,2371.7,54.46 1648,128.54 1686.9,123.54 1741.1,114.65 1787,100 1818.7,89.885 1823.4,77.854 1856,71 1906.6,60.352 2269.6,68.477 \ 2321,63 2334.9,61.517 2349.9,58.908 2363.4,56.171"]; b1_trim_and_map -> b1_trimx2_fastqc_stats [_draw_="c 7 -#000000 B 10 1647.54 129.48 1771.67 118.68 2097.06 90.76 2369 71 2422.75 67.09 2436.74 71.26 2490 63 2500.39 61.39 2511.51 \ 58.97 2521.72 56.45 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2522.03 58.9 2528.22 54.8 2520.83 54.15 ", pos="e,2529.7,54.429 1647.5,129.48 1771.7,118.68 2097.1,90.762 2369,71 2422.8,67.094 2436.7,71.256 2490,63 2500.4,61.389 2511.5,58.967 \ 2521.7,56.452"]; b1_trim_and_map -> b1_output_barcodecollapsese_metrics [_draw_="c 7 -#000000 B 10 1647.86 132.33 1733.2 129.53 1908.58 123.55 2057 117 2394.41 102.11 2479.83 104.6 2815 63 2831 61.01 2848.29 58.41 \ 2864.14 55.83 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2864.28 58.29 2870.79 54.74 2863.48 53.46 ", pos="e,2872.3,54.492 1647.9,132.33 1733.2,129.53 1908.6,123.55 2057,117 2394.4,102.11 2479.8,104.6 2815,63 2831,61.015 2848.3,58.407 \ 2864.1,55.832"]; b1_trim_and_map -> b1_mapgenome_mapped_to_genome [_draw_="c 7 -#000000 B 16 1544.14 133.77 1432.01 133.03 1158.65 129.92 930 117 843.59 112.12 821.82 111.24 736 100 661.74 90.28 644.49 78.81 \ 570 71 471.81 60.7 446.25 72.76 348 63 331.02 61.31 312.62 58.6 296.08 55.83 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 296.92 53.49 289.61 54.73 296.1 58.32 ", pos="e,288.12,54.473 1544.1,133.77 1432,133.03 1158.6,129.92 930,117 843.59,112.12 821.82,111.24 736,100 661.74,90.278 644.49,78.811 \ 570,71 471.81,60.703 446.25,72.761 348,63 331.02,61.314 312.62,58.6 296.08,55.832"]; b1_trim_and_map -> b1_trimx1_fastqc_report [_draw_="c 7 -#000000 B 13 1544.07 134.09 1443.27 133.9 1214.1 131.72 1022 117 856.33 104.3 816.53 85.3 651 71 578.74 64.76 559.82 73.15 \ 488 63 476.95 61.44 465.11 58.98 454.29 56.41 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 455.1 54.09 447.72 54.8 453.93 58.85 ", pos="e,446.24,54.44 1544.1,134.09 1443.3,133.9 1214.1,131.72 1022,117 856.33,104.3 816.53,85.305 651,71 578.74,64.756 559.82,73.154 488,\ 63 476.95,61.438 465.11,58.979 454.29,56.412"]; b1_trim_and_map -> b1_mapgenome_stats [_draw_="c 7 -#000000 B 13 1544.09 133.85 1415.66 133.06 1085.81 128.24 980 100 945.87 90.89 940.62 78.04 906 71 843.26 58.24 681.41 71.82 \ 618 63 607.69 61.57 596.68 59.15 586.62 56.59 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 587.29 54.23 579.9 54.81 586.04 58.97 ", pos="e,578.44,54.418 1544.1,133.85 1415.7,133.06 1085.8,128.24 980,100 945.87,90.893 940.62,78.04 906,71 843.26,58.24 681.41,71.816 618,\ 63 607.69,61.567 596.68,59.154 586.62,56.59"]; b1_trim_and_map -> b1_maprepeats_star_settings [_draw_="c 7 -#000000 B 13 1544.37 132.69 1425.23 129.38 1133.94 119.5 1038 100 997.23 91.71 989.92 78.51 949 71 876.35 57.66 856.31 72.05 \ 783 63 769.77 61.37 755.51 58.83 742.53 56.21 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 743.04 53.81 735.69 54.79 742.04 58.61 ", pos="e,734.21,54.48 1544.4,132.69 1425.2,129.38 1133.9,119.5 1038,100 997.23,91.713 989.92,78.513 949,71 876.35,57.662 856.31,72.046 \ 783,63 769.77,61.367 755.51,58.829 742.53,56.207"]; b1_trim_and_map -> b1_mapgenome_star_settings [_draw_="c 7 -#000000 B 13 1544.27 130.63 1495.45 127.39 1420.22 122.22 1355 117 1270.49 110.24 1249.06 111.01 1165 100 1069.29 87.47 1045.91 \ 80.58 951 63 939.21 60.82 926.52 58.36 914.62 56.02 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 915.34 53.66 908 54.71 914.39 58.47 ", pos="e,906.52,54.415 1544.3,130.63 1495.4,127.39 1420.2,122.22 1355,117 1270.5,110.24 1249.1,111.01 1165,100 1069.3,87.466 1045.9,80.582 \ 951,63 939.21,60.815 926.52,58.364 914.62,56.018"]; b1_trim_and_map -> b1_trimx1_metrics [_draw_="c 7 -#000000 B 13 1544.31 128.32 1514.42 125.03 1476.08 120.8 1442 117 1374.88 109.52 1357.91 109.19 1291 100 1278.29 98.25 1075.51 \ 65.84 1063 63 1055.33 61.26 1047.19 59.09 1039.5 56.88 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1040.24 54.54 1032.83 54.91 1038.86 59.24 ", pos="e,1031.4,54.485 1544.3,128.32 1514.4,125.03 1476.1,120.8 1442,117 1374.9,109.52 1357.9,109.19 1291,100 1278.3,98.254 1075.5,65.838 \ 1063,63 1055.3,61.262 1047.2,59.085 1039.5,56.876"]; b1_trim_and_map -> b1_trimx2_fastqc_report [_draw_="c 7 -#000000 B 7 1544.29 125.76 1468.94 113.49 1324.69 89.08 1203 63 1193.38 60.94 1183.08 58.59 1173.36 56.31 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1174.21 53.99 1166.83 54.77 1173.08 58.76 ", pos="e,1165.4,54.419 1544.3,125.76 1468.9,113.49 1324.7,89.08 1203,63 1193.4,60.939 1183.1,58.591 1173.4,56.311"]; b1_trim_and_map -> b1_maprepeats_stats [_draw_="c 7 -#000000 B 4 1564.17 125.56 1503.31 109.43 1370.6 74.26 1303.92 56.58 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1304.59 54.23 1297.2 54.8 1303.34 58.96 ", pos="e,1295.7,54.412 1564.2,125.56 1503.3,109.43 1370.6,74.255 1303.9,56.581"]; b1_trim_and_map -> b1_maprepeats_mapped_to_genome [_draw_="c 7 -#000000 B 4 1579.89 125.56 1549.96 109.88 1485.68 76.22 1451.12 58.11 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1452.49 56.06 1445.16 54.99 1450.22 60.4 ", pos="e,1443.8,54.284 1579.9,125.56 1550,109.88 1485.7,76.215 1451.1,58.11"]; b1_trim_and_map -> b1_trimx1_fastqc_stats [_draw_="c 7 -#000000 B 4 1596 125.56 1596 111.14 1596 81.48 1596 62.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1598.45 62.8 1596 55.8 1593.55 62.8 ", pos="e,1596,54.284 1596,125.56 1596,111.14 1596,81.476 1596,62.727"]; b1_trim_and_map -> b1_trimx1_fastq [_draw_="c 7 -#000000 B 4 1607.31 125.56 1627.9 110.21 1671.6 77.62 1696.2 59.27 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1697.53 61.34 1701.68 55.19 1694.6 57.41 ", pos="e,1702.9,54.284 1607.3,125.56 1627.9,110.21 1671.6,77.622 1696.2,59.271"]; b1_trim_and_map -> b1_output_pre_rmdup_sorted_bam [_draw_="c 7 -#000000 B 13 1612.53 125.57 1625.36 118.9 1643.52 109.22 1659 100 1679.44 87.83 1681.69 79.27 1704 71 1728.4 61.96 1736.29 \ 67.02 1762 63 1775.84 60.83 1790.75 58.31 1804.64 55.89 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1804.72 58.36 1811.19 54.73 1803.87 53.53 ", pos="e,1812.7,54.472 1612.5,125.57 1625.4,118.9 1643.5,109.22 1659,100 1679.4,87.828 1681.7,79.265 1704,71 1728.4,61.961 1736.3,67.024 \ 1762,63 1775.8,60.834 1790.8,58.313 1804.6,55.887"]; b1_trim_and_map -> make_bigwigs [_draw_="c 7 -#000000 B 4 1647.78 131.03 1785.14 123.14 2157.58 101.76 2294.02 93.93 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2293.92 96.39 2300.77 93.54 2293.64 91.49 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2046.5 110.6 0 19 3 -bam ", label=bam, lp="2046.5,112.5", pos="e,2302.3,93.453 1647.8,131.03 1785.1,123.14 2157.6,101.76 2294,93.927"]; demultiplex -> b1_demuxed_fastq_r1 [_draw_="c 7 -#000000 B 7 1425.73 177.96 1268.81 173.13 646.7 149.24 144 63 134.44 61.36 124.23 59.03 114.78 56.61 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 115.55 54.28 108.16 54.87 114.3 59.02 ", pos="e,106.69,54.485 1425.7,177.96 1268.8,173.13 646.7,149.24 144,63 134.44,61.36 124.23,59.026 114.78,56.612"]; demultiplex -> b1_trim_and_map [_draw_="c 7 -#000000 B 7 1425.52 176.58 1401.44 173.65 1376.92 167.2 1390 153 1399.77 142.39 1478.58 138.4 1535.82 136.9 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1535.65 139.36 1542.59 136.73 1535.53 134.46 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1413 155.6 0 46 9 -read_name ", label=read_name, lp="1413,157.5", pos="e,1544.1,136.7 1425.5,176.58 1401.4,173.65 1376.9,167.2 1390,153 1399.8,142.39 1478.6,138.4 1535.8,136.9"]; demultiplex -> b1_trim_and_map [_draw_="c 7 -#000000 B 7 1451.29 170.65 1445.26 165.35 1440.1 158.49 1445 153 1451.22 146.04 1496.66 141.59 1536.08 138.99 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1536.05 141.44 1542.88 138.56 1535.74 136.55 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1474.5 155.6 0 59 12 -dataset_name ", label=dataset_name, lp="1474.5,157.5", pos="e,1544.4,138.46 1451.3,170.65 1445.3,165.35 1440.1,158.49 1445,153 1451.2,146.04 1496.7,141.59 1536.1,138.99"]; demultiplex -> b1_trim_and_map [_draw_="c 7 -#000000 B 10 1482.94 170.62 1488.82 168 1495.23 165.01 1501 162 1507.89 158.41 1508.77 155.85 1516 153 1522.36 150.5 1529.16 \ 148.33 1536.01 146.47 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1536.4 148.9 1542.58 144.79 1535.19 144.15 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1528.5 155.6 0 25 5 -read1 ", label=read1, lp="1528.5,157.5", pos="e,1544,144.42 1482.9,170.62 1488.8,168 1495.2,165.01 1501,162 1507.9,158.41 1508.8,155.85 1516,153 1522.4,150.5 1529.2,148.33 1536,\ 146.47"]; make_bigwigs -> output_neg_bw [_draw_="c 7 -#000000 B 10 2362.04 80.69 2370.53 76.98 2381.08 73 2391 71 2462.69 56.57 2648.04 76.03 2720 63 2727.13 61.71 2734.62 59.55 \ 2741.54 57.19 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2742.17 59.57 2747.93 54.89 2740.51 54.96 ", pos="e,2749.3,54.38 2362,80.688 2370.5,76.977 2381.1,72.997 2391,71 2462.7,56.568 2648,76.03 2720,63 2727.1,61.709 2734.6,59.548 2741.5,\ 57.193"]; make_bigwigs -> output_pos_bw [_draw_="c 7 -#000000 B 10 2355.22 80.52 2360.25 76.87 2366.6 72.99 2373 71 2426.5 54.36 2569.91 73.19 2625 63 2632.13 61.68 2639.62 59.51 \ 2646.54 57.16 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2647.16 59.53 2652.92 54.86 2645.5 54.92 ", pos="e,2654.3,54.345 2355.2,80.524 2360.2,76.873 2366.6,72.991 2373,71 2426.5,54.36 2569.9,73.187 2625,63 2632.1,61.682 2639.6,59.512 \ 2646.5,57.156"]; default1 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1527 170.5 1527 189.5 1559 189.5 1559 170.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1543 177.5 0 16 3 -\"1\" ", fillcolor="#D5AEFC", height=0.27778, label="\"1\"", pos="1543,180", rects="1527,170.5,1559,189.5", width=0.44444]; default1 -> b1_trim_and_map [_draw_="c 7 -#000000 B 7 1542.2 170.85 1542.09 165.23 1542.91 157.91 1547 153 1548.22 151.54 1549.57 150.2 1551.02 148.98 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1552.25 151.11 1556.7 145.17 1549.52 147.04 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1595.5 155.6 0 97 24 -trimfirst_overlap_length ", label=trimfirst_overlap_length, lp="1595.5,157.5", pos="e,1558,144.33 1542.2,170.85 1542.1,165.23 1542.9,157.91 1547,153 1548.2,151.54 1549.6,150.2 1551,148.98"]; default2 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1633 170.5 1633 189.5 1665 189.5 1665 170.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1649 177.5 0 16 3 -\"5\" ", fillcolor="#D5AEFC", height=0.27778, label="\"5\"", pos="1649,180", rects="1633,170.5,1665,189.5", width=0.44444]; default2 -> b1_trim_and_map [_draw_="c 7 -#000000 B 7 1648.35 170.79 1647.49 165.14 1645.53 157.82 1641 153 1639.55 151.46 1637.94 150.05 1636.23 148.77 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1637.7 146.8 1630.46 145.23 1635.14 150.98 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1698 155.6 0 104 24 -trimagain_overlap_length ", label=trimagain_overlap_length, lp="1698,157.5", pos="e,1629.2,144.44 1648.3,170.79 1647.5,165.14 1645.5,157.82 1641,153 1639.5,151.46 1637.9,150.05 1636.2,148.77"]; }