digraph workflow { graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 768 233 768 0 ", bb="0,0,768,233", bgcolor="#eeeeee", clusterrank=local, color=black, dpi=96, fontsize=10, labeljust=left, nodesep=0.05, ranksep=0.22, xdotversion=1.7 ]; node [color=black, fillcolor=lightgoldenrodyellow, fontcolor=black, fontname=Helvetica, fontsize=10, height=0, label="\N", shape=record, style=filled, width=0 ]; edge [arrowsize=0.7, color=black, fontcolor=black, fontname=Helvetica, fontsize=8 ]; subgraph cluster_inputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 222 170 222 225 600 225 600 170 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 272 213 0 84 15 -Workflow Inputs ", bb="222,170,600,225", label="Workflow Inputs", lheight=0.15, lp="272,215.5", lwidth=1.17, rank=same, style=dashed ]; reference [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 388.5 178.5 388.5 197.5 451.5 197.5 451.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 420 185.5 0 47 9 -reference ", fillcolor="#94DDF4", height=0.27778, label=reference, pos="420,188", rects="388.5,178.5,451.5,197.5", width=0.875]; variants [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 328 178.5 328 197.5 384 197.5 384 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 356 185.5 0 40 8 -variants ", fillcolor="#94DDF4", height=0.27778, label=variants, pos="356,188", rects="328,178.5,384,197.5", width=0.77778]; rna_tumor_bam [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 230 178.5 230 197.5 324 197.5 324 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 277 185.5 0 78 13 -rna_tumor_bam ", fillcolor="#94DDF4", height=0.27778, label=rna_tumor_bam, pos="277,188", rects="230,178.5,324,197.5", width=1.3056]; e [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 544.5 178.5 544.5 197.5 567.5 197.5 567.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 556 185.5 0 7 1 -e ", fillcolor="#94DDF4", height=0.27778, label=e, pos="556,188", rects="544.5,178.5,567.5,197.5", width=0.31944]; transcriptome [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 455.5 178.5 455.5 197.5 540.5 197.5 540.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 498 185.5 0 69 13 -transcriptome ", fillcolor="#94DDF4", height=0.27778, label=transcriptome, pos="498,188", rects="455.5,178.5,540.5,197.5", width=1.1806]; i [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 572 178.5 572 197.5 592 197.5 592 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 582 185.5 0 4 1 -i ", fillcolor="#94DDF4", height=0.27778, label=i, pos="582,188", rects="572,178.5,592,197.5", width=0.27778]; } subgraph cluster_outputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 760 63 760 8 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ", bb="8,8,760,63", label="Workflow Outputs", labelloc=b, lheight=0.15, lp="62,17.5", lwidth=1.28, rank=same, style=dashed ]; junctions_annotate_out [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 472.5 35.5 472.5 54.5 603.5 54.5 603.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 538 42.5 0 115 22 -junctions_annotate_out ", fillcolor="#94DDF4", height=0.27778, label=junctions_annotate_out, pos="538,45", rects="472.5,35.5,603.5,54.5", width=1.8194]; junctions_extract_out [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 35.5 16 54.5 138 54.5 138 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 77 42.5 0 106 21 -junctions_extract_out ", fillcolor="#94DDF4", height=0.27778, label=junctions_extract_out, pos="77,45", rects="16,35.5,138,54.5", width=1.6944]; cis_splice_effects_identify_v3 [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 307.5 35.5 307.5 54.5 468.5 54.5 468.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 388 42.5 0 145 30 -cis_splice_effects_identify_v3 ", fillcolor="#94DDF4", height=0.27778, label=cis_splice_effects_identify_v3, pos="388,45", rects="307.5,35.5,468.5,54.5", width=2.2361]; cis_splice_effects_identify_v2 [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 142.5 35.5 142.5 54.5 303.5 54.5 303.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 223 42.5 0 145 30 -cis_splice_effects_identify_v2 ", fillcolor="#94DDF4", height=0.27778, label=cis_splice_effects_identify_v2, pos="223,45", rects="142.5,35.5,303.5,54.5", width=2.2361]; cis_splice_effects_identify [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 608 35.5 608 54.5 752 54.5 752 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 680 42.5 0 128 27 -cis_splice_effects_identify ", fillcolor="#94DDF4", height=0.27778, label=cis_splice_effects_identify, pos="680,45", rects="608,35.5,752,54.5", width=2]; } cis_splice_effects_v2 [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 187.5 125.5 187.5 144.5 306.5 144.5 306.5 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 247 132.5 0 103 21 -cis_splice_effects_v2 ", height=0.27778, label=cis_splice_effects_v2, pos="247,135", rects="187.5,125.5,306.5,144.5", width=1.6528]; reference -> cis_splice_effects_v2 [_draw_="c 7 -#000000 B 13 405.04 178.62 398.98 175.52 391.81 172.23 385 170 366.11 163.82 359.7 168.74 341 162 333.32 159.23 332.63 155.9 \ 325 153 318.48 150.52 311.51 148.36 304.52 146.49 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 305.19 144.13 297.8 144.79 303.99 148.88 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 347 155.6 0 12 3 -ref ", label=ref, lp="347,157.5", pos="e,296.33,144.42 405.04,178.62 398.98,175.52 391.81,172.23 385,170 366.11,163.82 359.7,168.74 341,162 333.32,159.23 332.63,155.9 \ 325,153 318.48,150.52 311.51,148.36 304.52,146.49"]; junctions_annotate [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 457 80.5 457 99.5 567 99.5 567 80.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 512 87.5 0 94 18 -junctions_annotate ", height=0.27778, label=junctions_annotate, pos="512,90", rects="457,80.5,567,99.5", width=1.5278]; reference -> junctions_annotate [_draw_="c 7 -#000000 B 10 435.79 178.54 441.96 175.51 449.18 172.27 456 170 472.79 164.4 482.29 174.31 495 162 496.98 160.08 504.14 127.89 \ 508.51 107.52 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 510.87 108.23 509.93 100.87 506.07 107.21 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 510 133.1 0 12 3 -ref ", label=ref, lp="510,135", pos="e,510.24,99.39 435.79,178.54 441.96,175.51 449.18,172.27 456,170 472.79,164.4 482.29,174.31 495,162 496.98,160.08 504.14,127.89 \ 508.51,107.52"]; cis_splice_effects [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 538 125.5 538 144.5 640 144.5 640 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 589 132.5 0 86 18 -cis_splice_effects ", height=0.27778, label=cis_splice_effects, pos="589,135", rects="538,125.5,640,144.5", width=1.4167]; reference -> cis_splice_effects [_draw_="c 7 -#000000 B 13 435.39 178.56 441.63 175.45 449 172.16 456 170 477.5 163.35 484.24 167.76 506 162 517.01 159.09 519.19 156.58 \ 530 153 536.47 150.86 543.4 148.72 550.14 146.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 550.44 149.19 556.48 144.88 549.07 144.49 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 536 155.6 0 12 3 -ref ", label=ref, lp="536,157.5", pos="e,557.93,144.46 435.39,178.56 441.63,175.45 449,172.16 456,170 477.5,163.35 484.24,167.76 506,162 517.01,159.09 519.19,156.58 530,\ 153 536.47,150.86 543.4,148.72 550.14,146.73"]; cis_splice_effects_v3 [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 328.5 125.5 328.5 144.5 447.5 144.5 447.5 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 388 132.5 0 103 21 -cis_splice_effects_v3 ", height=0.27778, label=cis_splice_effects_v3, pos="388,135", rects="328.5,125.5,447.5,144.5", width=1.6528]; reference -> cis_splice_effects_v3 [_draw_="c 7 -#000000 B 7 413.27 178.94 409.44 174.17 404.69 167.92 401 162 399.02 158.82 397.09 155.3 395.36 151.9 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 397.64 150.99 392.38 145.77 393.24 153.14 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 407 155.6 0 12 3 -ref ", label=ref, lp="407,157.5", pos="e,391.72,144.41 413.27,178.94 409.44,174.17 404.69,167.92 401,162 399.02,158.82 397.09,155.3 395.36,151.9"]; variants -> cis_splice_effects_v2 [_draw_="c 7 -#000000 B 10 343.12 178.65 337.47 175.4 330.63 171.98 324 170 305.61 164.5 250.93 176.19 238 162 235.33 159.07 235.34 155.3 \ 236.57 151.54 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 238.67 152.83 239.67 145.48 234.3 150.6 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 255 155.6 0 34 8 -variants ", label=variants, lp="255,157.5", pos="e,240.36,144.13 343.12,178.65 337.47,175.4 330.63,171.98 324,170 305.61,164.5 250.93,176.19 238,162 235.33,159.07 235.34,155.3 236.57,\ 151.54"]; variants -> cis_splice_effects [_draw_="c 7 -#000000 B 13 370.76 178.6 376.11 175.71 382.25 172.56 388 170 397.51 165.77 400.85 166.95 410 162 415.86 158.83 415.75 155.33 \ 422 153 443.37 145.02 498.54 147.37 529.91 145.23 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 529.82 147.7 536.57 144.63 529.38 142.82 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 439 155.6 0 34 8 -variants ", label=variants, lp="439,157.5", pos="e,538.08,144.5 370.76,178.6 376.11,175.71 382.25,172.56 388,170 397.51,165.77 400.85,166.95 410,162 415.86,158.83 415.75,155.33 \ 422,153 443.37,145.02 498.54,147.37 529.91,145.23"]; variants -> cis_splice_effects_v3 [_draw_="c 7 -#000000 B 7 354.37 178.5 353.43 171.19 353.25 160.63 358 153 358.67 151.92 359.44 150.9 360.28 149.94 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 361.83 151.84 365.56 145.43 358.65 148.12 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 375 155.6 0 34 8 -variants ", label=variants, lp="375,157.5", pos="e,366.71,144.45 354.37,178.5 353.43,171.19 353.25,160.63 358,153 358.67,151.92 359.44,150.9 360.28,149.94"]; rna_tumor_bam -> cis_splice_effects_v2 [_draw_="c 7 -#000000 B 7 231.5 178.5 223.05 174.82 215.24 169.55 210 162 206.41 156.83 208.7 152.35 213.53 148.63 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 214.7 150.79 219.46 145.11 212.19 146.58 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 219.5 155.6 0 19 3 -bam ", label=bam, lp="219.5,157.5", pos="e,220.77,144.34 231.5,178.5 223.05,174.82 215.24,169.55 210,162 206.41,156.83 208.7,152.35 213.53,148.63"]; junctions_extract [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 82.5 125.5 82.5 144.5 183.5 144.5 183.5 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 133 132.5 0 85 17 -junctions_extract ", height=0.27778, label=junctions_extract, pos="133,135", rects="82.5,125.5,183.5,144.5", width=1.4028]; rna_tumor_bam -> junctions_extract [_draw_="c 7 -#000000 B 7 241.91 178.6 225.35 174.26 205.44 168.52 188 162 177.49 158.07 166.23 152.92 156.65 148.25 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 157.77 146.07 150.41 145.14 155.59 150.45 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 197.5 155.6 0 19 3 -bam ", label=bam, lp="197.5,157.5", pos="e,149.06,144.47 241.91,178.6 225.35,174.26 205.44,168.52 188,162 177.49,158.07 166.23,152.92 156.65,148.25"]; rna_tumor_bam -> cis_splice_effects [_draw_="c 7 -#000000 B 7 283.59 178.66 291.39 168.83 303.53 153.73 305 153 326.23 142.53 484.02 146.78 530.22 145.01 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 530.33 147.46 537.17 144.59 530.03 142.57 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 314.5 155.6 0 19 3 -bam ", label=bam, lp="314.5,157.5", pos="e,538.68,144.5 283.59,178.66 291.39,168.83 303.53,153.73 305,153 326.23,142.53 484.02,146.78 530.22,145.01"]; rna_tumor_bam -> cis_splice_effects_v3 [_draw_="c 7 -#000000 B 7 275.41 178.55 274.5 170.85 274.58 159.69 281 153 284.22 149.65 300.91 146.35 320.19 143.56 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 320.49 145.99 327.08 142.61 319.81 141.14 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 290.5 155.6 0 19 3 -bam ", label=bam, lp="290.5,157.5", pos="e,328.58,142.4 275.41,178.55 274.5,170.85 274.58,159.69 281,153 284.22,149.65 300.91,146.35 320.19,143.56"]; e -> cis_splice_effects [_draw_="c 7 -#000000 B 4 561.45 178.58 566.25 171.15 573.37 160.15 579.17 151.19 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 581.08 152.74 582.83 145.54 576.97 150.08 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 580 155.6 0 6 1 -e ", label=e, lp="580,157.5", pos="e,583.65,144.26 561.45,178.58 566.25,171.15 573.37,160.15 579.17,151.19"]; transcriptome -> cis_splice_effects_v2 [_draw_="c 7 -#000000 B 13 483.69 178.52 476.57 174 468 168.13 461 162 456.97 158.47 457.81 155.35 453 153 427.78 140.7 354.95 147.46 327 \ 145 323.03 144.65 318.96 144.27 314.85 143.86 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 315.1 141.43 307.89 143.16 314.6 146.3 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 467 155.6 0 12 3 -gtf ", label=gtf, lp="467,157.5", pos="e,306.38,143.01 483.69,178.52 476.57,174 468,168.13 461,162 456.97,158.47 457.81,155.35 453,153 427.78,140.7 354.95,147.46 327,145 \ 323.03,144.65 318.96,144.27 314.85,143.86"]; transcriptome -> junctions_annotate [_draw_="c 7 -#000000 B 10 512.26 178.59 517.96 174.4 523.9 168.77 527 162 530.2 155.03 526.18 152.35 524 145 520.28 132.49 517.13 118.04 \ 514.99 107.23 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 517.45 107.04 513.73 100.63 512.64 107.96 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 530 133.1 0 12 3 -gtf ", label=gtf, lp="530,135", pos="e,513.44,99.141 512.26,178.59 517.96,174.4 523.9,168.77 527,162 530.2,155.03 526.18,152.35 524,145 520.28,132.49 517.13,118.04 514.99,\ 107.23"]; transcriptome -> cis_splice_effects [_draw_="c 7 -#000000 B 4 513.03 178.58 527.65 170.38 550.04 157.83 566.73 148.48 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 567.72 150.73 572.63 145.17 565.33 146.46 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 562 155.6 0 12 3 -gtf ", label=gtf, lp="562,157.5", pos="e,573.95,144.43 513.03,178.58 527.65,170.38 550.04,157.83 566.73,148.48"]; transcriptome -> cis_splice_effects_v3 [_draw_="c 7 -#000000 B 7 494.35 178.6 490.47 170.71 483.58 159.21 474 153 468.22 149.25 461.79 146.29 455.13 143.97 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 456.08 141.7 448.67 141.97 454.63 146.38 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 489 155.6 0 12 3 -gtf ", label=gtf, lp="489,157.5", pos="e,447.22,141.52 494.35,178.6 490.47,170.71 483.58,159.21 474,153 468.22,149.25 461.79,146.29 455.13,143.97"]; i -> cis_splice_effects [_draw_="c 7 -#000000 B 4 583.16 178.58 584.12 171.52 585.54 161.24 586.73 152.55 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 589.14 153.03 587.66 145.76 584.28 152.37 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 587.5 155.6 0 3 1 -i ", label=i, lp="587.5,157.5", pos="e,587.87,144.26 583.16,178.58 584.12,171.52 585.54,161.24 586.73,152.55"]; cis_splice_effects_v2 -> cis_splice_effects_identify_v2 [_draw_="c 7 -#000000 B 4 244.7 125.56 240.75 111.07 232.6 81.21 227.49 62.47 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 229.86 61.85 225.66 55.74 225.14 63.14 ", pos="e,225.26,54.284 244.7,125.56 240.75,111.07 232.6,81.205 227.49,62.471"]; junctions_extract -> junctions_extract_out [_draw_="c 7 -#000000 B 4 127.63 125.56 118.24 110.81 98.71 80.11 86.84 61.46 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 88.91 60.15 83.08 55.56 84.78 62.78 ", pos="e,82.271,54.284 127.63,125.56 118.24,110.81 98.709,80.114 86.838,61.46"]; junctions_extract -> junctions_annotate [_draw_="c 7 -#000000 B 7 183.34 125.64 184.91 125.42 186.47 125.21 188 125 278.45 112.86 383.59 102.52 448.97 96.53 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 448.88 99 455.63 95.92 448.44 94.12 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 349 110.6 0 38 9 -junctions ", label=junctions, lp="349,112.5", pos="e,457.14,95.785 183.34,125.64 184.91,125.42 186.47,125.21 188,125 278.45,112.86 383.59,102.52 448.97,96.53"]; junctions_annotate -> junctions_annotate_out [_draw_="c 7 -#000000 B 4 517.01 80.71 520.32 75.24 524.76 67.9 528.7 61.38 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 530.69 62.82 532.22 55.56 526.5 60.28 ", pos="e,533,54.265 517.01,80.709 520.32,75.236 524.76,67.899 528.7,61.381"]; cis_splice_effects -> cis_splice_effects_identify [_draw_="c 7 -#000000 B 4 597.73 125.56 613.39 110.41 646.44 78.46 665.54 59.99 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 667.02 61.96 670.35 55.34 663.61 58.44 ", pos="e,671.43,54.284 597.73,125.56 613.39,110.41 646.44,78.458 665.54,59.987"]; cis_splice_effects_v3 -> cis_splice_effects_identify_v3 [_draw_="c 7 -#000000 B 4 388 125.56 388 111.14 388 81.48 388 62.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 390.45 62.8 388 55.8 385.55 62.8 ", pos="e,388,54.284 388,125.56 388,111.14 388,81.476 388,62.727"]; }