digraph workflow { graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 458 1201 458 1201 0 ", bb="0,0,1201,458", bgcolor="#eeeeee", clusterrank=local, color=black, dpi=96, fontsize=10, labeljust=left, nodesep=0.05, ranksep=0.22, xdotversion=1.7 ]; node [color=black, fillcolor=lightgoldenrodyellow, fontcolor=black, fontname=Helvetica, fontsize=10, height=0, label="\N", shape=record, style=filled, width=0 ]; edge [arrowsize=0.7, color=black, fontcolor=black, fontname=Helvetica, fontsize=8 ]; subgraph cluster_inputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 395 8 450 1193 450 1193 395 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 438 0 84 15 -Workflow Inputs ", bb="8,395,1193,450", label="Workflow Inputs", lheight=0.15, lp="58,440.5", lwidth=1.17, rank=same, style=dashed ]; emit_reference_confidence [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 501.5 403.5 501.5 422.5 650.5 422.5 650.5 403.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 576 410.5 0 133 25 -emit_reference_confidence ", fillcolor="#94DDF4", height=0.27778, label=emit_reference_confidence, pos="576,413", rects="501.5,403.5,650.5,422.5", width=2.0694]; custom_gnomad_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 96 403.5 96 422.5 214 422.5 214 403.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 155 410.5 0 102 17 -custom_gnomad_vcf ", fillcolor="#94DDF4", height=0.27778, label=custom_gnomad_vcf, pos="155,413", rects="96,403.5,214,422.5", width=1.6389]; cram [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 654.5 403.5 654.5 422.5 695.5 422.5 695.5 403.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 675 410.5 0 25 4 -cram ", fillcolor="#94DDF4", height=0.27778, label=cram, pos="675,413", rects="654.5,403.5,695.5,422.5", width=0.56944]; synonyms_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 410.5 403.5 410.5 422.5 497.5 422.5 497.5 403.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 454 410.5 0 71 13 -synonyms_file ", fillcolor="#94DDF4", height=0.27778, label=synonyms_file, pos="454,413", rects="410.5,403.5,497.5,422.5", width=1.2083]; limit_variant_intervals [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1057.5 403.5 1057.5 422.5 1184.5 422.5 1184.5 403.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1121 410.5 0 111 23 -limit_variant_intervals ", fillcolor="#94DDF4", height=0.27778, label=limit_variant_intervals, pos="1121,413", rects="1057.5,403.5,1184.5,422.5", width=1.7639]; coding_only [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 403.5 16.5 422.5 91.5 422.5 91.5 403.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 54 410.5 0 59 11 -coding_only ", fillcolor="#94DDF4", height=0.27778, label=coding_only, pos="54,413", rects="16.5,403.5,91.5,422.5", width=1.0417]; gvcf_gq_bands [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 699.5 403.5 699.5 422.5 788.5 422.5 788.5 403.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 744 410.5 0 73 13 -gvcf_gq_bands ", fillcolor="#94DDF4", height=0.27778, label=gvcf_gq_bands, pos="744,413", rects="699.5,403.5,788.5,422.5", width=1.2361]; intervals [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 792.5 403.5 792.5 422.5 851.5 422.5 851.5 403.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 822 410.5 0 43 9 -intervals ", fillcolor="#94DDF4", height=0.27778, label=intervals, pos="822,413", rects="792.5,403.5,851.5,422.5", width=0.81944]; vep_cache_dir [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 218 403.5 218 422.5 304 422.5 304 403.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 261 410.5 0 70 13 -vep_cache_dir ", fillcolor="#94DDF4", height=0.27778, label=vep_cache_dir, pos="261,413", rects="218,403.5,304,422.5", width=1.1944]; hgvs_annotation [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 308 403.5 308 422.5 406 422.5 406 403.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 357 410.5 0 82 15 -hgvs_annotation ", fillcolor="#94DDF4", height=0.27778, label=hgvs_annotation, pos="357,413", rects="308,403.5,406,422.5", width=1.3611]; reference [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 990.5 403.5 990.5 422.5 1053.5 422.5 1053.5 403.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1022 410.5 0 47 9 -reference ", fillcolor="#94DDF4", height=0.27778, label=reference, pos="1022,413", rects="990.5,403.5,1053.5,422.5", width=0.875]; contamination_fraction [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 856 403.5 856 422.5 986 422.5 986 403.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 921 410.5 0 114 22 -contamination_fraction ", fillcolor="#94DDF4", height=0.27778, label=contamination_fraction, pos="921,413", rects="856,403.5,986,422.5", width=1.8056]; } subgraph cluster_outputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 671 8 671 63 1027 63 1027 8 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 725 15 0 92 16 -Workflow Outputs ", bb="671,8,1027,63", label="Workflow Outputs", labelloc=b, lheight=0.15, lp="725,17.5", lwidth=1.28, rank=same, style=dashed ]; gvcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 905 35.5 905 54.5 943 54.5 943 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 924 42.5 0 22 4 -gvcf ", fillcolor="#94DDF4", height=0.27778, label=gvcf, pos="924,45", rects="905,35.5,943,54.5", width=0.52778]; coding_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 831.5 35.5 831.5 54.5 900.5 54.5 900.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 866 42.5 0 53 10 -coding_vcf ", fillcolor="#94DDF4", height=0.27778, label=coding_vcf, pos="866,45", rects="831.5,35.5,900.5,54.5", width=0.95833]; limited_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 947.5 35.5 947.5 54.5 1018.5 54.5 1018.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 983 42.5 0 55 11 -limited_vcf ", fillcolor="#94DDF4", height=0.27778, label=limited_vcf, pos="983,45", rects="947.5,35.5,1018.5,54.5", width=0.98611]; vep_summary [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 679 35.5 679 54.5 765 54.5 765 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 722 42.5 0 70 11 -vep_summary ", fillcolor="#94DDF4", height=0.27778, label=vep_summary, pos="722,45", rects="679,35.5,765,54.5", width=1.1944]; final_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 769 35.5 769 54.5 827 54.5 827 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 798 42.5 0 42 9 -final_vcf ", fillcolor="#94DDF4", height=0.27778, label=final_vcf, pos="798,45", rects="769,35.5,827,54.5", width=0.80556]; } haplotype_caller [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 681 350.5 681 369.5 913 369.5 913 350.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 797 357.5 0 216 43 -scatter GATK HaplotypeCaller over intervals ", fillcolor="#F3CEA1", height=0.27778, label="scatter GATK HaplotypeCaller over intervals", pos="797,360", rects="681,350.5,913,369.5", width=3.2222]; emit_reference_confidence -> haplotype_caller [_draw_="c 7 -#000000 B 7 575.69 403.59 575.9 395.69 577.6 384.19 585 378 592.57 371.67 630.77 367.67 672.7 365.15 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 672.77 367.6 679.62 364.75 672.49 362.7 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 641 380.6 0 112 25 -emit_reference_confidence ", label=emit_reference_confidence, lp="641,382.5", pos="e,681.13,364.66 575.69,403.59 575.9,395.69 577.6,384.19 585,378 592.57,371.67 630.77,367.67 672.7,365.15"]; annotate_variants [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 546.5 260.5 546.5 279.5 719.5 279.5 719.5 260.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 633 267.5 0 157 32 -Ensembl Variant Effect Predictor ", height=0.27778, label="Ensembl Variant Effect Predictor", pos="633,270", rects="546.5,260.5,719.5,279.5", width=2.4028]; custom_gnomad_vcf -> annotate_variants [_draw_="c 7 -#000000 B 10 172.32 403.52 205.14 387.74 278.9 353.6 344 333 432.93 304.86 457.71 307.18 549 288 559.79 285.73 571.37 283.35 \ 582.39 281.12 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 582.81 283.53 589.19 279.74 581.84 278.73 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 386 335.6 0 84 17 -custom_gnomad_vcf ", label=custom_gnomad_vcf, lp="386,337.5", pos="e,590.67,279.44 172.32,403.52 205.14,387.74 278.9,353.6 344,333 432.93,304.86 457.71,307.18 549,288 559.79,285.73 571.37,283.35 \ 582.39,281.12"]; cram -> haplotype_caller [_draw_="c 7 -#000000 B 7 681.48 403.6 688.04 395.72 698.93 384.22 711 378 715.53 375.67 720.34 373.65 725.29 371.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 725.79 374.33 731.71 369.86 724.3 369.66 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 721.5 380.6 0 21 4 -cram ", label=cram, lp="721.5,382.5", pos="e,733.15,369.4 681.48,403.6 688.04,395.72 698.93,384.22 711,378 715.53,375.67 720.34,373.65 725.29,371.91"]; synonyms_file -> annotate_variants [_draw_="c 7 -#000000 B 4 464.66 403.6 494.58 380.04 579.51 313.14 616 284.39 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 617.45 286.37 621.43 280.11 614.41 282.52 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 582 335.6 0 58 13 -synonyms_file ", label=synonyms_file, lp="582,337.5", pos="e,622.62,279.18 464.66,403.6 494.58,380.04 579.51,313.14 616,284.39"]; limit_variants [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 976.5 80.5 976.5 99.5 1117.5 99.5 1117.5 80.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1047 87.5 0 125 25 -SelectVariants (GATK 3.6) ", height=0.27778, label="SelectVariants (GATK 3.6)", pos="1047,90", rects="976.5,80.5,1117.5,99.5", width=1.9583]; limit_variant_intervals -> limit_variants [_draw_="c 7 -#000000 B 10 1107.39 403.68 1094.8 394.82 1078 379.53 1078 361 1078 361 1078 361 1078 134 1078 122.93 1071.15 112.77 1063.89 \ 105.1 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1065.68 103.42 1058.93 100.34 1062.29 106.95 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1101.5 245.6 0 47 13 -interval_list ", label=interval_list, lp="1101.5,247.5", pos="e,1057.8,99.289 1107.4,403.68 1094.8,394.82 1078,379.53 1078,361 1078,361 1078,361 1078,134 1078,122.93 1071.2,112.77 1063.9,105.1"]; coding_only -> annotate_variants [_draw_="c 7 -#000000 B 13 73.94 403.51 80.61 400.73 88.1 397.67 95 395 170.77 365.65 189.54 357.55 267 333 311.81 318.8 322.91 314.25 369 \ 305 424.69 293.83 487.76 285.55 538.28 279.95 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 538.4 282.41 545.1 279.21 537.87 277.54 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 291.5 335.6 0 49 11 -coding_only ", label=coding_only, lp="291.5,337.5", pos="e,546.6,279.05 73.944,403.51 80.612,400.73 88.102,397.67 95,395 170.77,365.65 189.54,357.55 267,333 311.81,318.8 322.91,314.25 369,\ 305 424.69,293.83 487.76,285.55 538.28,279.95"]; gvcf_gq_bands -> haplotype_caller [_draw_="c 7 -#000000 B 7 738.51 403.65 734.39 396.23 730.35 385.44 736 378 736.91 376.8 737.91 375.67 738.97 374.62 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 740.46 376.56 744.49 370.33 737.46 372.69 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 766.5 380.6 0 61 13 -gvcf_gq_bands ", label=gvcf_gq_bands, lp="766.5,382.5", pos="e,745.68,369.4 738.51,403.65 734.39,396.23 730.35,385.44 736,378 736.91,376.8 737.91,375.67 738.97,374.62"]; intervals -> haplotype_caller [_draw_="c 7 -#000000 B 7 812.89 403.57 808.6 399.08 803.81 393.2 801 387 799.64 383.99 798.73 380.61 798.12 377.31 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 800.57 377.21 797.3 370.56 795.71 377.8 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 819 380.6 0 36 9 -intervals ", label=intervals, lp="819,382.5", pos="e,797.12,369.05 812.89,403.57 808.6,399.08 803.81,393.2 801,387 799.64,383.99 798.73,380.61 798.12,377.31"]; vep_cache_dir -> annotate_variants [_draw_="c 7 -#000000 B 7 280.05 403.59 323.28 384.66 432.35 337.81 526 305 549.55 296.75 576.3 288.25 597.16 281.81 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 597.72 284.2 603.69 279.81 596.28 279.52 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 469 335.6 0 40 9 -cache_dir ", label=cache_dir, lp="469,337.5", pos="e,605.14,279.36 280.05,403.59 323.28,384.66 432.35,337.81 526,305 549.55,296.75 576.3,288.25 597.16,281.81"]; hgvs_annotation -> annotate_variants [_draw_="c 7 -#000000 B 7 373.15 403.61 408.08 385.49 493.29 341.37 565 305 579.33 297.73 595.41 289.69 608.33 283.25 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 609.4 285.46 614.57 280.14 607.21 281.07 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 519 335.6 0 20 4 -hgvs ", label=hgvs, lp="519,337.5", pos="e,615.93,279.47 373.15,403.61 408.08,385.49 493.29,341.37 565,305 579.33,297.73 595.41,289.69 608.33,283.25"]; reference -> annotate_variants [_draw_="c 7 -#000000 B 10 1021.02 403.52 1019.05 390.26 1013.39 364.64 998 350 986.47 339.03 877.49 308.68 862 305 816.27 294.12 764.53 \ 286.09 721.81 280.57 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 722.15 278.14 714.89 279.69 721.53 283 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1001 335.6 0 40 9 -reference ", label=reference, lp="1001,337.5", pos="e,713.39,279.5 1021,403.52 1019.1,390.26 1013.4,364.64 998,350 986.47,339.03 877.49,308.68 862,305 816.27,294.12 764.53,286.09 721.81,\ 280.57"]; reference -> haplotype_caller [_draw_="c 7 -#000000 B 13 1006.66 403.56 1000.66 400.53 993.64 397.29 987 395 971.1 389.51 965.31 393.99 950 387 943.94 384.23 944.19 380.48 \ 938 378 931.97 375.58 925.68 373.47 919.26 371.65 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 919.91 369.29 912.52 369.87 918.66 374.03 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 970 380.6 0 40 9 -reference ", label=reference, lp="970,382.5", pos="e,911.06,369.48 1006.7,403.56 1000.7,400.53 993.64,397.29 987,395 971.1,389.51 965.31,393.99 950,387 943.94,384.23 944.19,380.48 \ 938,378 931.97,375.58 925.68,373.47 919.26,371.65"]; reference -> limit_variants [_draw_="c 7 -#000000 B 10 1023.84 403.74 1025.91 393.7 1029 376.19 1029 361 1029 361 1029 361 1029 134 1029 124.51 1032.78 114.69 1036.87 \ 106.84 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1038.99 108.06 1040.35 100.77 1034.74 105.62 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1049 245.6 0 40 9 -reference ", label=reference, lp="1049,247.5", pos="e,1041.1,99.458 1023.8,403.74 1025.9,393.7 1029,376.19 1029,361 1029,361 1029,361 1029,134 1029,124.51 1032.8,114.69 1036.9,106.84"]; genotype_gvcfs [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 734.5 305.5 734.5 324.5 859.5 324.5 859.5 305.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 797 312.5 0 109 20 -GATK HaplotypeCaller ", height=0.27778, label="GATK HaplotypeCaller", pos="797,315", rects="734.5,305.5,859.5,324.5", width=1.7361]; reference -> genotype_gvcfs [_draw_="c 7 -#000000 B 13 1015.36 403.57 1008.88 395.89 998.37 384.73 987 378 976.6 371.84 972.34 374.19 961 370 940.09 362.27 935.98 357.55 \ 915 350 890.08 341.03 861.55 332.76 838.79 326.62 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 839.54 324.29 832.15 324.85 838.28 329.02 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 981 358.1 0 40 9 -reference ", label=reference, lp="981,360", pos="e,830.68,324.46 1015.4,403.57 1008.9,395.89 998.37,384.73 987,378 976.6,371.84 972.34,374.19 961,370 940.09,362.27 935.98,357.55 \ 915,350 890.08,341.03 861.55,332.76 838.79,326.62"]; contamination_fraction -> haplotype_caller [_draw_="c 7 -#000000 B 10 888.32 403.61 874.82 399.51 859.25 393.94 846 387 840.09 383.91 839.73 381.41 834 378 831.14 376.3 828.09 374.65 \ 825 373.09 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 826.1 370.9 818.73 370.07 823.98 375.32 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 893.5 380.6 0 95 22 -contamination_fraction ", label=contamination_fraction, lp="893.5,382.5", pos="e,817.37,369.42 888.32,403.61 874.82,399.51 859.25,393.94 846,387 840.09,383.91 839.73,381.41 834,378 831.14,376.3 828.09,374.65 \ 825,373.09"]; annotate_variants -> vep_summary [_draw_="c 7 -#000000 B 10 638.89 260.54 644.14 252.17 651 238.79 651 226 651 226 651 226 651 89 651 73.91 662.89 63.96 676.93 57.49 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 677.48 59.91 683.02 54.98 675.62 55.38 ", pos="e,684.42,54.406 638.89,260.54 644.14,252.17 651,238.79 651,226 651,226 651,226 651,89 651,73.906 662.89,63.965 676.93,57.487"]; coding_variant_filter [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 701.5 215.5 701.5 234.5 814.5 234.5 814.5 215.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 758 222.5 0 97 21 -Coding Variant filter ", height=0.27778, label="Coding Variant filter", pos="758,225", rects="701.5,215.5,814.5,234.5", width=1.5694]; annotate_variants -> coding_variant_filter [_draw_="c 7 -#000000 B 7 663.01 260.51 671.76 257.91 681.3 254.96 690 252 703.06 247.56 717.33 242.19 729.42 237.48 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 729.99 239.89 735.61 235.05 728.19 235.33 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 720.5 245.6 0 13 3 -vcf ", label=vcf, lp="720.5,247.5", pos="e,737.01,234.49 663.01,260.51 671.76,257.91 681.3,254.96 690,252 703.06,247.56 717.33,242.19 729.42,237.48"]; bgzip_annotated_vcf [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 747.5 125.5 747.5 144.5 812.5 144.5 812.5 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 780 132.5 0 49 9 -bgzip VCF ", height=0.27778, label="bgzip VCF", pos="780,135", rects="747.5,125.5,812.5,144.5", width=0.90278]; annotate_variants -> bgzip_annotated_vcf [_draw_="c 7 -#000000 B 7 644.35 260.54 647.82 257.87 651.61 254.87 655 252 696.5 216.83 742.81 172.4 765.66 150.11 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 767.09 152.14 770.37 145.49 763.66 148.64 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 721.5 200.6 0 13 4 -file ", label=file, lp="721.5,202.5", pos="e,771.46,144.43 644.35,260.54 647.82,257.87 651.61,254.87 655,252 696.5,216.83 742.81,172.4 765.66,150.11"]; haplotype_caller -> gvcf [_draw_="c 7 -#000000 B 10 895.06 350.5 933.68 344.36 969 333.85 969 316 969 316 969 316 969 89 969 84.91 953.22 70.58 940.35 59.58 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 942.07 57.83 935.14 55.18 938.91 61.57 ", pos="e,933.99,54.204 895.06,350.5 933.68,344.36 969,333.85 969,316 969,316 969,316 969,89 969,84.905 953.22,70.584 940.35,59.583"]; haplotype_caller -> genotype_gvcfs [_draw_="c 7 -#000000 B 4 797 350.71 797 345.59 797 338.85 797 332.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 799.45 332.78 797 325.78 794.55 332.78 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 808 335.6 0 22 5 -gvcfs ", label=gvcfs, lp="808,337.5", pos="e,797,324.27 797,350.71 797,345.59 797,338.85 797,332.67"]; bgzip_coding_vcf [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 812.5 170.5 812.5 189.5 877.5 189.5 877.5 170.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 845 177.5 0 49 9 -bgzip VCF ", height=0.27778, label="bgzip VCF", pos="845,180", rects="812.5,170.5,877.5,189.5", width=0.90278]; coding_variant_filter -> bgzip_coding_vcf [_draw_="c 7 -#000000 B 4 775.19 215.5 788.06 209.14 805.85 200.35 820.25 193.23 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 821.3 195.45 826.49 190.15 819.13 191.05 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 815.5 200.6 0 13 4 -file ", label=file, lp="815.5,202.5", pos="e,827.85,189.48 775.19,215.5 788.06,209.14 805.85,200.35 820.25,193.23"]; limit_variants -> limited_vcf [_draw_="c 7 -#000000 B 4 1034.36 80.5 1025.24 74.38 1012.77 66 1002.39 59.03 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1004.05 57.19 996.87 55.32 1001.32 61.26 ", pos="e,995.62,54.478 1034.4,80.505 1025.2,74.38 1012.8,65.999 1002.4,59.031"]; index_coding_vcf [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 835 125.5 835 144.5 897 144.5 897 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 866 132.5 0 46 9 -vcf index ", height=0.27778, label="vcf index", pos="866,135", rects="835,125.5,897,144.5", width=0.86111]; bgzip_coding_vcf -> index_coding_vcf [_draw_="c 7 -#000000 B 4 849.05 170.71 851.66 165.36 855.15 158.22 858.28 151.81 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 860.43 152.99 861.3 145.63 856.03 150.84 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 863.5 155.6 0 13 3 -vcf ", label=vcf, lp="863.5,157.5", pos="e,861.96,144.27 849.05,170.71 851.66,165.36 855.15,158.22 858.28,151.81"]; genotype_gvcfs -> annotate_variants [_draw_="c 7 -#000000 B 4 764.6 305.5 738.43 298.64 701.47 288.95 673.37 281.59 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 674.19 279.27 666.8 279.86 672.95 284.01 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 735.5 290.6 0 13 3 -vcf ", label=vcf, lp="735.5,292.5", pos="e,665.33,279.48 764.6,305.5 738.43,298.64 701.47,288.95 673.37,281.59"]; index_annotated_vcf [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 756 80.5 756 99.5 818 99.5 818 80.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 787 87.5 0 46 9 -vcf index ", height=0.27778, label="vcf index", pos="787,90", rects="756,80.5,818,99.5", width=0.86111]; index_annotated_vcf -> final_vcf [_draw_="c 7 -#000000 B 4 789.12 80.71 790.46 75.47 792.24 68.53 793.85 62.24 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 796.15 63.12 795.51 55.73 791.4 61.91 ", pos="e,795.89,54.265 789.12,80.709 790.46,75.474 792.24,68.534 793.85,62.235"]; index_coding_vcf -> coding_vcf [_draw_="c 7 -#000000 B 4 866 125.56 866 111.14 866 81.48 866 62.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 868.45 62.8 866 55.8 863.55 62.8 ", pos="e,866,54.284 866,125.56 866,111.14 866,81.476 866,62.727"]; index_coding_vcf -> limit_variants [_draw_="c 7 -#000000 B 4 896.7 126.71 925.99 119.75 970.41 109.2 1003.36 101.37 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1003.76 103.79 1010.01 99.79 1002.63 99.02 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 978.5 110.6 0 13 3 -vcf ", label=vcf, lp="978.5,112.5", pos="e,1011.5,99.438 896.7,126.71 925.99,119.75 970.41,109.2 1003.4,101.37"]; bgzip_annotated_vcf -> index_annotated_vcf [_draw_="c 7 -#000000 B 4 781.35 125.71 782.18 120.59 783.28 113.85 784.29 107.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 786.7 108.06 785.41 100.76 781.87 107.27 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 790.5 110.6 0 13 3 -vcf ", label=vcf, lp="790.5,112.5", pos="e,785.65,99.265 781.35,125.71 782.18,120.59 783.28,113.85 784.29,107.67"]; default1 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1085 125.5 1085 144.5 1121 144.5 1121 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1103 132.5 0 20 4 -true ", fillcolor="#D5AEFC", height=0.27778, label=true, pos="1103,135", rects="1085,125.5,1121,144.5", width=0.5]; default1 -> limit_variants [_draw_="c 7 -#000000 B 7 1097.89 125.94 1094.04 120.36 1088.36 113.06 1082 108 1079.94 106.36 1077.69 104.83 1075.37 103.4 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1076.89 101.44 1069.58 100.2 1074.52 105.73 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1123.5 110.6 0 65 16 -exclude_filtered ", label=exclude_filtered, lp="1123.5,112.5", pos="e,1068.3,99.471 1097.9,125.94 1094,120.36 1088.4,113.06 1082,108 1079.9,106.36 1077.7,104.83 1075.4,103.4"]; }