digraph workflow { graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 664 233 664 0 ", bb="0,0,664,233", bgcolor="#eeeeee", clusterrank=local, color=black, dpi=96, fontsize=10, labeljust=left, nodesep=0.05, ranksep=0.22, xdotversion=1.7 ]; node [color=black, fillcolor=lightgoldenrodyellow, fontcolor=black, fontname=Helvetica, fontsize=10, height=0, label="\N", shape=record, style=filled, width=0 ]; edge [arrowsize=0.7, color=black, fontcolor=black, fontname=Helvetica, fontsize=8 ]; subgraph cluster_inputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 170 8 225 606 225 606 170 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 213 0 84 15 -Workflow Inputs ", bb="8,170,606,225", label="Workflow Inputs", lheight=0.15, lp="58,215.5", lwidth=1.17, rank=same, style=dashed ]; output_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 178.5 16 197.5 84 197.5 84 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 50 185.5 0 52 11 -output_file ", fillcolor="#94DDF4", height=0.27778, label=output_file, pos="50,188", rects="16,178.5,84,197.5", width=0.94444]; advanced_options [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 145.5 178.5 145.5 197.5 250.5 197.5 250.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 198 185.5 0 89 16 -advanced_options ", fillcolor="#94DDF4", height=0.27778, label=advanced_options, pos="198,188", rects="145.5,178.5,250.5,197.5", width=1.4583]; threads [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 88.5 178.5 88.5 197.5 141.5 197.5 141.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 115 185.5 0 37 7 -threads ", fillcolor="#94DDF4", height=0.27778, label=threads, pos="115,188", rects="88.5,178.5,141.5,197.5", width=0.73611]; reference [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 254.5 178.5 254.5 197.5 317.5 197.5 317.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 286 185.5 0 47 9 -reference ", fillcolor="#94DDF4", height=0.27778, label=reference, pos="286,188", rects="254.5,178.5,317.5,197.5", width=0.875]; shard [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 322 178.5 322 197.5 366 197.5 366 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 344 185.5 0 28 5 -shard ", fillcolor="#94DDF4", height=0.27778, label=shard, pos="344,188", rects="322,178.5,366,197.5", width=0.61111]; input_bam [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 370 178.5 370 197.5 438 197.5 438 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 404 185.5 0 52 9 -input_bam ", fillcolor="#94DDF4", height=0.27778, label=input_bam, pos="404,188", rects="370,178.5,438,197.5", width=0.94444]; known_sites [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 442.5 178.5 442.5 197.5 519.5 197.5 519.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 481 185.5 0 61 11 -known_sites ", fillcolor="#94DDF4", height=0.27778, label=known_sites, pos="481,188", rects="442.5,178.5,519.5,197.5", width=1.0694]; interval_list [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 524 178.5 524 197.5 598 197.5 598 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 561 185.5 0 58 13 -interval_list ", fillcolor="#94DDF4", height=0.27778, label=interval_list, pos="561,188", rects="524,178.5,598,197.5", width=1.0278]; } subgraph cluster_outputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 61 8 61 63 169 63 169 8 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 115 15 0 92 16 -Workflow Outputs ", bb="61,8,169,63", label="Workflow Outputs", labelloc=b, lheight=0.15, lp="115,17.5", lwidth=1.28, rank=same, style=dashed ]; output [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 91 35.5 91 54.5 139 54.5 139 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 115 42.5 0 32 6 -output ", fillcolor="#94DDF4", height=0.27778, label=output, pos="115,45", rects="91,35.5,139,54.5", width=0.66667]; } realign [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 299 125.5 299 144.5 349 144.5 349 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 324 132.5 0 34 7 -realign ", height=0.27778, label=realign, pos="324,135", rects="299,125.5,349,144.5", width=0.69444]; output_file -> realign [_draw_="c 7 -#000000 B 7 60.62 178.6 71.56 170.47 89.43 158.59 107 153 140.34 142.39 239 138.24 291.03 136.75 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 290.82 139.2 297.75 136.56 290.69 134.31 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 122.5 155.6 0 31 7 -_output ", label=_output, lp="122.5,157.5", pos="e,299.27,136.52 60.623,178.6 71.558,170.47 89.431,158.59 107,153 140.34,142.39 239,138.24 291.03,136.75"]; merge [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 91 80.5 91 99.5 139 99.5 139 80.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 115 87.5 0 32 5 -merge ", height=0.27778, label=merge, pos="115,90", rects="91,80.5,139,99.5", width=0.66667]; output_file -> merge [_draw_="c 7 -#000000 B 7 51.06 178.66 53 166.04 58.08 141.78 70 125 76.03 116.52 84.8 109.22 93.01 103.59 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 93.88 105.94 98.42 100.08 91.22 101.83 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 92 133.1 0 44 11 -output_file ", label=output_file, lp="92,135", pos="e,99.692,99.253 51.058,178.66 52.997,166.04 58.075,141.78 70,125 76.027,116.52 84.803,109.22 93.007,103.59"]; advanced_options -> realign [_draw_="c 7 -#000000 B 7 192.07 178.76 187.42 171.21 182.7 160.14 189 153 202.02 138.24 255.29 135.49 290.9 135.37 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 290.57 137.82 297.57 135.39 290.58 132.92 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 227 155.6 0 76 16 -advanced_options ", label=advanced_options, lp="227,157.5", pos="e,299.09,135.39 192.07,178.76 187.42,171.21 182.7,160.14 189,153 202.02,138.24 255.29,135.49 290.9,135.37"]; threads -> realign [_draw_="c 7 -#000000 B 7 121.55 178.65 128.43 170.56 140.04 158.7 153 153 176.95 142.46 248.37 138.38 290.95 136.86 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 290.89 139.31 297.81 136.63 290.73 134.42 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 169 155.6 0 32 7 -threads ", label=threads, lp="169,157.5", pos="e,299.32,136.58 121.55,178.65 128.43,170.56 140.04,158.7 153,153 176.95,142.46 248.37,138.38 290.95,136.86"]; threads -> merge [_draw_="c 7 -#000000 B 4 115 178.82 115 163.17 115 128.71 115 107.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 117.45 107.95 115 100.95 112.55 107.95 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 131 133.1 0 32 7 -threads ", label=threads, lp="131,135", pos="e,115,99.438 115,178.82 115,163.17 115,128.71 115,107.91"]; reference -> realign [_draw_="c 7 -#000000 B 7 276.51 178.76 269.43 171.61 261.95 161.15 268 153 273.51 145.56 282.2 141.27 291.09 138.82 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 291.44 141.25 297.76 137.37 290.4 136.46 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 288 155.6 0 40 9 -reference ", label=reference, lp="288,157.5", pos="e,299.24,137.05 276.51,178.76 269.43,171.61 261.95,161.15 268,153 273.51,145.56 282.2,141.27 291.09,138.82"]; shard -> realign [_draw_="c 7 -#000000 B 13 355.92 178.63 360.26 175.74 365.26 172.58 370 170 377.69 165.81 383.23 169.34 388 162 390.18 158.65 390.44 156.17 \ 388 153 380.72 143.54 368.83 138.96 357.25 136.85 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 357.72 134.44 350.45 135.92 357.06 139.3 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 402 155.6 0 24 5 -shard ", label=shard, lp="402,157.5", pos="e,348.95,135.72 355.92,178.63 360.26,175.74 365.26,172.58 370,170 377.69,165.81 383.23,169.34 388,162 390.18,158.65 390.44,156.17 \ 388,153 380.72,143.54 368.83,138.96 357.25,136.85"]; shard -> realign [_draw_="c 7 -#000000 B 7 331.61 178.7 322.4 172.4 311.22 164.42 310 162 308.19 158.41 308.8 154.59 310.51 151 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 312.42 152.56 314.33 145.39 308.37 149.8 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 324 155.6 0 28 6 -_shard ", label=_shard, lp="324,157.5", pos="e,315.18,144.14 331.61,178.7 322.4,172.4 311.22,164.42 310,162 308.19,158.41 308.8,154.59 310.51,151"]; shard -> realign [_draw_="c 7 -#000000 B 7 342.55 178.65 341.16 171.61 338.71 161.38 335 153 334.8 152.54 334.58 152.07 334.35 151.61 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 336.54 150.49 330.91 145.66 332.3 152.94 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 361 155.6 0 44 11 -output_file ", label=output_file, lp="361,157.5", pos="e,330.15,144.35 342.55,178.65 341.16,171.61 338.71,161.38 335,153 334.8,152.54 334.58,152.07 334.35,151.61"]; input_bam -> realign [_draw_="c 7 -#000000 B 7 410.75 178.61 415.88 171.16 421.1 160.35 415 153 407.67 144.17 380.22 139.91 357.36 137.86 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 357.56 135.41 350.39 137.3 357.17 140.3 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 439.5 155.6 0 43 9 -input_bam ", label=input_bam, lp="439.5,157.5", pos="e,348.88,137.17 410.75,178.61 415.88,171.16 421.1,160.35 415,153 407.67,144.17 380.22,139.91 357.36,137.86"]; known_sites -> realign [_draw_="c 7 -#000000 B 7 478.78 178.79 476.16 170.81 470.98 159.04 462 153 445.35 141.81 392.17 137.98 356.9 136.68 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 357.38 134.24 350.3 136.46 357.22 139.14 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 496.5 155.6 0 51 11 -known_sites ", label=known_sites, lp="496.5,157.5", pos="e,348.79,136.41 478.78,178.79 476.16,170.81 470.98,159.04 462,153 445.35,141.81 392.17,137.98 356.9,136.68"]; interval_list -> realign [_draw_="c 7 -#000000 B 7 554.46 178.61 547.6 170.49 536 158.61 523 153 494.02 140.49 405.6 137.17 356.95 136.3 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 357.19 133.86 350.16 136.2 357.12 138.76 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 561.5 155.6 0 47 13 -interval_list ", label=interval_list, lp="561.5,157.5", pos="e,348.64,136.17 554.46,178.61 547.6,170.49 536,158.61 523,153 494.02,140.49 405.6,137.17 356.95,136.3"]; realign -> merge [_draw_="c 7 -#000000 B 4 299.2 128.9 261.27 121.09 188.83 106.19 146.99 97.58 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 147.63 95.21 140.28 96.2 146.64 100.01 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 260.5 110.6 0 43 9 -input_bam ", label=input_bam, lp="260.5,112.5", pos="e,138.8,95.896 299.2,128.9 261.27,121.09 188.83,106.19 146.99,97.582"]; merge -> output [_draw_="c 7 -#000000 B 4 115 80.71 115 75.59 115 68.85 115 62.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 117.45 62.78 115 55.78 112.55 62.78 ", pos="e,115,54.265 115,80.709 115,75.593 115,68.848 115,62.666"]; default1 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 614 178.5 614 197.5 664 197.5 664 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 639 185.5 0 34 6 -\".bam\" ", fillcolor="#D5AEFC", height=0.27778, label="\".bam\"", pos="639,188", rects="614,178.5,664,197.5", width=0.69444]; default1 -> realign [_draw_="c 7 -#000000 B 7 629.24 178.55 619.17 170.38 602.62 158.46 586 153 544.42 139.33 417.77 136.6 357.09 136.09 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 357.17 133.64 350.15 136.04 357.13 138.54 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 612 155.6 0 16 4 -_ext ", label=_ext, lp="612,157.5", pos="e,348.64,136.03 629.24,178.55 619.17,170.38 602.62,158.46 586,153 544.42,139.33 417.77,136.6 357.09,136.09"]; }