Workflow: qiime2 demux sequences
Fetched 2023-01-14 17:15:33 GMT
Verified with cwltool version 3.1.20221201130942
Demultiplexing sequences from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/
- Selected
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- Default Values
- Nested Workflows
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| sample_metadata | File | ||
| sequences_artifact | File | ||
| demux_sequences_filename | String | ||
| metadata_barcodes_column | String | ||
| demux_visualization_filename | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| demux_sequences |
qiime2-step1-import-demux.cwl#demux-emp-single.cwl
(CommandLineTool)
|
qiime2: Demultiplex sequence data for data generated with the Earth Microbiome Project (EMP) amplicon sequencing protocol | |
| demux_visualization |
qiime2-step1-import-demux.cwl#demux-summarize.cwl
(CommandLineTool)
|
qiime2: Summarize counts per sample for all samples, and generate interactive positional quality plots based on `n` randomly selected sequences |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| demux_sequences_artifact | File | ||
| demux_visualization_artifact | File |
Permalink:
https://w3id.org/cwl/view/git/e2dc95d4f12210359360d814382e7201d836dfcf/packed/qiime2-step1-import-demux.cwl?part=qiime2-02-demux.cwl
