Workflow: exomeseq-gatk4-03-organizedirectories.cwl

Fetched 2023-01-10 19:30:59 GMT
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Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
raw_variants File[]
trim_reports d9f3d81ccb64ee8aed81b3885f4263f9[]
fastqc_reports ac175b7668b4f0ba8e864a616e05732e[]
bams_recalibrated File[]
bams_markduplicates File[]

Steps

ID Runs Label Doc
org_raw_variants
../tools/files-to-directory.cwl (ExpressionTool)
Moves an array of Files into a named directory
org_trim_reports
../tools/file-pairs-to-directory.cwl (ExpressionTool)
Moves an array of File pairs into a named directory
org_fastqc_reports
../tools/file-pairs-to-directory.cwl (ExpressionTool)
Moves an array of File pairs into a named directory
org_bams_recalibrated
../tools/files-to-directory.cwl (ExpressionTool)
Moves an array of Files into a named directory
org_bams_markduplicates
../tools/files-to-directory.cwl (ExpressionTool)
Moves an array of Files into a named directory

Outputs

ID Type Label Doc
raw_variants_dir Directory
trim_reports_dir Directory
fastqc_reports_dir Directory
bams_recalibrated_dir Directory
bams_markduplicates_dir Directory
Permalink: https://w3id.org/cwl/view/git/e82f3a71183048dd6700ec6725ee526ac1a95238/subworkflows/exomeseq-gatk4-03-organizedirectories.cwl