digraph workflow { graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 323 390 323 390 0 ", bb="0,0,390,323", bgcolor="#eeeeee", clusterrank=local, color=black, dpi=96, fontsize=10, labeljust=left, nodesep=0.05, ranksep=0.22, xdotversion=1.7 ]; node [color=black, fillcolor=lightgoldenrodyellow, fontcolor=black, fontname=Helvetica, fontsize=10, height=0, label="\N", shape=record, style=filled, width=0 ]; edge [arrowsize=0.7, color=black, fontcolor=black, fontname=Helvetica, fontsize=8 ]; subgraph cluster_inputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 260 8 315 326 315 326 260 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 303 0 84 15 -Workflow Inputs ", bb="8,260,326,315", label="Workflow Inputs", lheight=0.15, lp="58,305.5", lwidth=1.17, rank=same, style=dashed ]; indexed_sequences [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 268.5 16 287.5 128 287.5 128 268.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 72 275.5 0 96 17 -indexed_sequences ", fillcolor="#94DDF4", height=0.27778, label=indexed_sequences, pos="72,278", rects="16,268.5,128,287.5", width=1.5556]; model [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 132.5 268.5 132.5 287.5 317.5 287.5 317.5 268.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 225 275.5 0 169 33 -rRNA protein model to search with ", fillcolor="#94DDF4", height=0.27778, label="rRNA protein model to search with", pos="225,278", rects="132.5,268.5,317.5,287.5", width=2.5694]; } subgraph cluster_outputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 107 8 107 63 375 63 375 8 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 161 15 0 92 16 -Workflow Outputs ", bb="107,8,375,63", label="Workflow Outputs", labelloc=b, lheight=0.15, lp="161,17.5", lwidth=1.28, rank=same, style=dashed ]; hmmer_search_results [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 239 35.5 239 54.5 367 54.5 367 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 303 42.5 0 112 20 -hmmer_search_results ", fillcolor="#94DDF4", height=0.27778, label=hmmer_search_results, pos="303,45", rects="239,35.5,367,54.5", width=1.7778]; matching_sequences [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 115.5 35.5 115.5 54.5 234.5 54.5 234.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 175 42.5 0 103 18 -matching_sequences ", fillcolor="#94DDF4", height=0.27778, label=matching_sequences, pos="175,45", rects="115.5,35.5,234.5,54.5", width=1.6528]; } fetch_aligned_sequences [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 29 80.5 29 99.5 281 99.5 281 80.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 155 87.5 0 236 46 -extract by names from an indexed sequence file ", height=0.27778, label="extract by names from an indexed sequence file", pos="155,90", rects="29,80.5,281,99.5", width=3.5]; indexed_sequences -> fetch_aligned_sequences [_draw_="c 7 -#000000 B 10 72 268.7 72 258.6 72 241.05 72 226 72 226 72 226 72 134 72 118.66 83.32 108.79 97.59 102.43 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 98.25 104.81 103.87 99.97 96.46 100.24 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 113 178.1 0 82 17 -indexed_sequences ", label=indexed_sequences, lp="113,180", pos="e,105.28,99.421 72,268.7 72,258.6 72,241.05 72,226 72,226 72,226 72,134 72,118.66 83.316,108.79 97.591,102.43"]; hmmsearch [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 104.5 215.5 104.5 234.5 345.5 234.5 345.5 215.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 225 222.5 0 225 45 -search profile(s) against a sequence database ", height=0.27778, label="search profile(s) against a sequence database", pos="225,225", rects="104.5,215.5,345.5,234.5", width=3.3472]; indexed_sequences -> hmmsearch [_draw_="c 7 -#000000 B 7 90.73 268.52 107.57 261.11 133.1 250.41 156 243 163.15 240.68 170.81 238.51 178.33 236.53 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 178.76 238.95 184.94 234.85 177.55 234.21 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 190 245.6 0 68 14 -sequence_query ", label=sequence_query, lp="190,247.5", pos="e,186.4,234.48 90.73,268.52 107.57,261.11 133.1,250.41 156,243 163.15,240.68 170.81,238.51 178.33,236.53"]; model -> hmmsearch [_draw_="c 7 -#000000 B 4 225 268.58 225 261.52 225 251.24 225 242.55 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 227.45 242.78 225 235.78 222.55 242.78 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 252.5 245.6 0 55 12 -hmm_profiles ", label=hmm_profiles, lp="252.5,247.5", pos="e,225,234.26 225,268.58 225,261.52 225,251.24 225,242.55"]; extract_coordinates [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 79.5 125.5 79.5 144.5 192.5 144.5 192.5 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 136 132.5 0 97 19 -extract_coordinates ", height=0.27778, label=extract_coordinates, pos="136,135", rects="79.5,125.5,192.5,144.5", width=1.5694]; extract_coordinates -> fetch_aligned_sequences [_draw_="c 7 -#000000 B 7 136.08 125.93 136.4 120.61 137.37 113.63 140 108 140.32 107.31 140.68 106.63 141.07 105.97 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 142.9 107.6 145.1 100.52 138.96 104.69 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 154 110.6 0 28 5 -names ", label=names, lp="154,112.5", pos="e,146,99.302 136.08,125.93 136.4,120.61 137.37,113.63 140,108 140.32,107.31 140.68,106.63 141.07,105.97"]; fetch_aligned_sequences -> matching_sequences [_draw_="c 7 -#000000 B 4 158.86 80.71 161.35 75.36 164.67 68.22 167.65 61.81 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 169.79 63.02 170.52 55.64 165.34 60.95 ", pos="e,171.16,54.265 158.86,80.709 161.35,75.355 164.67,68.217 167.65,61.807"]; hmmsearch -> hmmer_search_results [_draw_="c 7 -#000000 B 10 275.8 215.58 293.49 209.49 309 199.02 309 181 309 181 309 181 309 89 309 80.13 307.73 70.32 306.36 62.32 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 308.81 62.11 305.11 55.68 304 63.02 ", pos="e,304.83,54.196 275.8,215.58 293.49,209.49 309,199.02 309,181 309,181 309,181 309,89 309,80.128 307.73,70.324 306.36,62.321"]; extract_coord_lines [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 161 170.5 161 189.5 273 189.5 273 170.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 217 177.5 0 96 19 -extract_coord_lines ", height=0.27778, label=extract_coord_lines, pos="217,180", rects="161,170.5,273,189.5", width=1.5556]; hmmsearch -> extract_coord_lines [_draw_="c 7 -#000000 B 4 223.46 215.71 222.48 210.47 221.19 203.53 220.02 197.24 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 222.5 197.19 218.81 190.75 217.69 198.08 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 240 200.6 0 38 7 -summary ", label=summary, lp="240,202.5", pos="e,218.54,189.27 223.46,215.71 222.48,210.47 221.19,203.53 220.02,197.24"]; extract_coord_lines -> extract_coordinates [_draw_="c 7 -#000000 B 4 201 170.5 189.13 164.2 172.76 155.51 159.42 148.43 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 160.64 146.31 153.31 145.19 158.34 150.63 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 217 155.6 0 68 16 -coordinate_lines ", label=coordinate_lines, lp="217,157.5", pos="e,151.97,144.48 201,170.5 189.13,164.2 172.76,155.51 159.42,148.43"]; default1 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 197 125.5 197 144.5 233 144.5 233 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 215 132.5 0 20 4 -true ", fillcolor="#D5AEFC", height=0.27778, label=true, pos="215,135", rects="197,125.5,233,144.5", width=0.5]; default1 -> fetch_aligned_sequences [_draw_="c 7 -#000000 B 7 197.39 126.54 188.35 122.64 178.85 118.39 177 117 172.76 113.81 168.79 109.67 165.42 105.63 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 167.53 104.35 161.31 100.31 163.66 107.35 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 241 110.6 0 128 27 -names_contain_subseq_coords ", label=names_contain_subseq_coords, lp="241,112.5", pos="e,160.38,99.113 197.39,126.54 188.35,122.64 178.85,118.39 177,117 172.76,113.81 168.79,109.67 165.42,105.63"]; default2 [_draw_="c 7 -#000000 C 7 -#d5aefc P 4 334 268.5 334 287.5 390 287.5 390 268.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 362 275.5 0 40 8 -\"1.0E-5\" ", fillcolor="#D5AEFC", height=0.27778, label="\"1.0E-5\"", pos="362,278", rects="334,268.5,390,287.5", width=0.77778]; default2 -> hmmsearch [_draw_="c 7 -#000000 B 7 345.42 268.53 339.65 265.7 333.09 262.6 327 260 306.12 251.09 282.05 242.98 262.55 236.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 263.34 234.59 255.93 234.88 261.91 239.28 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 329.5 245.6 0 49 11 -e_threshold ", label=e_threshold, lp="329.5,247.5", pos="e,254.49,234.44 345.42,268.53 339.65,265.7 333.09,262.6 327,260 306.12,251.09 282.05,242.98 262.55,236.91"]; }