digraph workflow { graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 598 233 598 0 ", bb="0,0,598,233", bgcolor="#eeeeee", clusterrank=local, color=black, dpi=96, fontsize=10, labeljust=left, nodesep=0.05, ranksep=0.22, xdotversion=1.7 ]; node [color=black, fillcolor=lightgoldenrodyellow, fontcolor=black, fontname=Helvetica, fontsize=10, height=0, label="\N", shape=record, style=filled, width=0 ]; edge [arrowsize=0.7, color=black, fontcolor=black, fontname=Helvetica, fontsize=8 ]; subgraph cluster_inputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 131 170 131 225 542 225 542 170 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 181 213 0 84 15 -Workflow Inputs ", bb="131,170,542,225", label="Workflow Inputs", lheight=0.15, lp="181,215.5", lwidth=1.17, rank=same, style=dashed ]; interval [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 207 178.5 207 197.5 261 197.5 261 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 234 185.5 0 38 8 -interval ", fillcolor="#94DDF4", height=0.27778, label=interval, pos="234,188", rects="207,178.5,261,197.5", width=0.75]; job_uuid [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 476 178.5 476 197.5 534 197.5 534 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 505 185.5 0 42 8 -job_uuid ", fillcolor="#94DDF4", height=0.27778, label=job_uuid, pos="505,188", rects="476,178.5,534,197.5", width=0.80556]; bam_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 265.5 178.5 265.5 197.5 324.5 197.5 324.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 295 185.5 0 43 8 -bam_file ", fillcolor="#94DDF4", height=0.27778, label=bam_file, pos="295,188", rects="265.5,178.5,324.5,197.5", width=0.81944]; snp_ref [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 328.5 178.5 328.5 197.5 381.5 197.5 381.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 355 185.5 0 37 7 -snp_ref ", fillcolor="#94DDF4", height=0.27778, label=snp_ref, pos="355,188", rects="328.5,178.5,381.5,197.5", width=0.73611]; sample_name [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 386 178.5 386 197.5 472 197.5 472 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 429 185.5 0 70 11 -sample_name ", fillcolor="#94DDF4", height=0.27778, label=sample_name, pos="429,188", rects="386,178.5,472,197.5", width=1.1944]; reference [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 139.5 178.5 139.5 197.5 202.5 197.5 202.5 178.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 171 185.5 0 47 9 -reference ", fillcolor="#94DDF4", height=0.27778, label=reference, pos="171,188", rects="139.5,178.5,202.5,197.5", width=0.875]; } subgraph cluster_outputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 590 63 590 8 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ", bb="8,8,590,63", label="Workflow Outputs", labelloc=b, lheight=0.15, lp="62,17.5", lwidth=1.28, rank=same, style=dashed ]; haplotypecaller_sorted_vcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 432.5 35.5 432.5 54.5 581.5 54.5 581.5 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 507 42.5 0 133 26 -haplotypecaller_sorted_vcf ", fillcolor="#94DDF4", height=0.27778, label=haplotypecaller_sorted_vcf, pos="507,45", rects="432.5,35.5,581.5,54.5", width=2.0694]; time_metrics_from_gatk3_haplotypecaller [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 35.5 16 54.5 240 54.5 240 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 128 42.5 0 208 39 -time_metrics_from_gatk3_haplotypecaller ", fillcolor="#94DDF4", height=0.27778, label=time_metrics_from_gatk3_haplotypecaller, pos="128,45", rects="16,35.5,240,54.5", width=3.1111]; time_metrics_from_picard_sortvcf [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 244 35.5 244 54.5 428 54.5 428 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 336 42.5 0 168 32 -time_metrics_from_picard_sortvcf ", fillcolor="#94DDF4", height=0.27778, label=time_metrics_from_picard_sortvcf, pos="336,45", rects="244,35.5,428,54.5", width=2.5556]; } gatk3_haplotypecaller [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 261.5 125.5 261.5 144.5 386.5 144.5 386.5 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 324 132.5 0 109 21 -gatk3_haplotypecaller ", height=0.27778, label=gatk3_haplotypecaller, pos="324,135", rects="261.5,125.5,386.5,144.5", width=1.7361]; interval -> gatk3_haplotypecaller [_draw_="c 7 -#000000 B 7 240.89 178.6 247.6 170.93 258.44 159.79 270 153 273.56 150.91 277.41 149.04 281.36 147.39 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 281.94 149.79 287.6 145 280.19 145.21 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 285.5 155.6 0 31 8 -interval ", label=interval, lp="285.5,157.5", pos="e,289.02,144.46 240.89,178.6 247.6,170.93 258.44,159.79 270,153 273.56,150.91 277.41,149.04 281.36,147.39"]; picard_sortvcf [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 293 80.5 293 99.5 379 99.5 379 80.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 336 87.5 0 70 14 -picard_sortvcf ", height=0.27778, label=picard_sortvcf, pos="336,90", rects="293,80.5,379,99.5", width=1.1944]; job_uuid -> picard_sortvcf [_draw_="c 7 -#000000 B 7 505.14 178.75 504.83 171.2 503.22 160.13 497 153 469.09 120.99 422.71 105.42 386.88 97.9 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 387.78 95.58 380.43 96.62 386.82 100.39 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 505.5 133.1 0 35 8 -job_uuid ", label=job_uuid, lp="505.5,135", pos="e,378.95,96.327 505.14,178.75 504.83,171.2 503.22,160.13 497,153 469.09,120.99 422.71,105.42 386.88,97.899"]; job_uuid -> gatk3_haplotypecaller [_draw_="c 7 -#000000 B 7 491.49 178.55 475.57 168.62 451.14 153.41 450 153 432.61 146.77 413.13 142.8 394.77 140.27 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 395.19 137.86 387.93 139.4 394.57 142.72 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 481.5 155.6 0 35 8 -job_uuid ", label=job_uuid, lp="481.5,157.5", pos="e,386.43,139.21 491.49,178.55 475.57,168.62 451.14,153.41 450,153 432.61,146.77 413.13,142.8 394.77,140.27"]; bam_file -> gatk3_haplotypecaller [_draw_="c 7 -#000000 B 7 296.82 178.71 298.65 171.53 301.93 161.05 307 153 307.49 152.22 308.02 151.45 308.58 150.7 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 310.39 152.35 313.18 145.48 306.71 149.11 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 324.5 155.6 0 35 8 -bam_file ", label=bam_file, lp="324.5,157.5", pos="e,314.18,144.34 296.82,178.71 298.65,171.53 301.93,161.05 307,153 307.49,152.22 308.02,151.45 308.58,150.7"]; snp_ref -> gatk3_haplotypecaller [_draw_="c 7 -#000000 B 7 351.81 178.55 348.94 171.45 344.37 161.18 339 153 338.5 152.24 337.97 151.49 337.42 150.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 339.42 149.3 333.09 145.44 335.63 152.41 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 359.5 155.6 0 31 7 -snp_ref ", label=snp_ref, lp="359.5,157.5", pos="e,332.13,144.27 351.81,178.55 348.94,171.45 344.37,161.18 339,153 338.5,152.24 337.97,151.49 337.42,150.73"]; sample_name -> gatk3_haplotypecaller [_draw_="c 7 -#000000 B 7 417.71 178.55 407.3 171.06 391.21 160.22 376 153 371.6 150.91 366.88 148.98 362.14 147.22 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 363.05 144.95 355.63 144.94 361.43 149.57 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 420 155.6 0 58 11 -sample_name ", label=sample_name, lp="420,157.5", pos="e,354.21,144.44 417.71,178.55 407.3,171.06 391.21,160.22 376,153 371.6,150.91 366.88,148.98 362.14,147.22"]; reference -> picard_sortvcf [_draw_="c 7 -#000000 B 7 172.63 178.78 175.73 165.41 183.75 139.04 201 125 224.52 105.84 257.43 97.3 284.87 93.56 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 285.04 96.01 291.69 92.74 284.44 91.15 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 230.5 133.1 0 59 14 -reference_dict ", label=reference_dict, lp="230.5,135", pos="e,293.19,92.554 172.63,178.78 175.73,165.41 183.75,139.04 201,125 224.52,105.84 257.43,97.299 284.87,93.565"]; reference -> gatk3_haplotypecaller [_draw_="c 7 -#000000 B 7 179.47 178.53 187.96 170.58 201.76 159.05 216 153 227.68 148.04 240.63 144.51 253.38 142 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 253.77 144.42 260.23 140.77 252.9 139.6 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 236 155.6 0 40 9 -reference ", label=reference, lp="236,157.5", pos="e,261.72,140.5 179.47,178.53 187.96,170.58 201.76,159.05 216,153 227.68,148.04 240.63,144.51 253.38,142"]; picard_sortvcf -> haplotypecaller_sorted_vcf [_draw_="c 7 -#000000 B 4 369.78 80.5 397.19 73.61 435.94 63.87 465.28 56.49 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 465.63 58.93 471.82 54.85 464.43 54.18 ", pos="e,473.29,54.478 369.78,80.505 397.19,73.614 435.94,63.869 465.28,56.491"]; picard_sortvcf -> time_metrics_from_picard_sortvcf [_draw_="c 7 -#000000 B 4 336 80.71 336 75.59 336 68.85 336 62.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 338.45 62.78 336 55.78 333.55 62.78 ", pos="e,336,54.265 336,80.709 336,75.593 336,68.848 336,62.666"]; gatk3_haplotypecaller -> time_metrics_from_gatk3_haplotypecaller [_draw_="c 7 -#000000 B 4 305.21 125.56 270.08 109.79 194.42 75.82 154.27 57.79 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 155.51 55.66 148.12 55.03 153.5 60.13 ", pos="e,146.74,54.412 305.21,125.56 270.08,109.79 194.42,75.822 154.27,57.795"]; gatk3_haplotypecaller -> picard_sortvcf [_draw_="c 7 -#000000 B 4 326.31 125.71 327.77 120.47 329.71 113.53 331.47 107.24 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 333.76 108.12 333.29 100.72 329.05 106.81 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 337.5 110.6 0 13 3 -vcf ", label=vcf, lp="337.5,112.5", pos="e,333.69,99.265 326.31,125.71 327.77,120.47 329.71,113.53 331.47,107.24"]; }