#!/usr/bin/env cwl-runner cwlVersion: v1.2 class: Workflow requirements: - class: MultipleInputFeatureRequirement - class: InlineJavascriptRequirement inputs: in_dummy: File scientific_name: string[] managePy_Path: string blastdb_Path: string[] in_fasta_transcript: File tree: string[] steps: #step 0 addfile_2_db: run: addfile_2_db.cwl in: in_fasta: in_fasta_transcript blastdb_Path: blastdb_Path out: [out_dummy] #step 1 addblast: run: addblast-transcript.cwl in: scientific_name: scientific_name managePy_Path: managePy_Path in_fasta: in_fasta_transcript in_dummy: addfile_2_db/out_dummy tree: tree out: [out_dummy] #step 3 makeblastdb: run: makeblastdb.cwl in: in_fasta: in_fasta_transcript managePy_Path: managePy_Path in_dummy: addblast/out_dummy out: [out_dummy] #step 4 populatesequence: run: populatesequence.cwl in: in_fasta: in_fasta_transcript managePy_Path: managePy_Path in_dummy: makeblastdb/out_dummy out: [out_dummy] #step 5 showblast: run: showblast.cwl in: in_fasta: in_fasta_transcript managePy_Path: managePy_Path in_dummy: populatesequence/out_dummy out: [out_dummy] outputs: []