#!/usr/bin/env cwl-runner class: Workflow cwlVersion: v1.0 inputs: special_file: type: File default: class: File path: special_file outputs: cores: type: File outputSource: report/output steps: count: in: special_file: special_file out: [output] run: dynresreq.cwl report: in: file1: count/output out: [output] run: cat-tool.cwl