Term: relevant standard operating procedures (sop)
Standard operating procedures used in assembly and/or annotation of genomes, metagenomes or environmental sequences
URI: MIXS:0000090
Applicable Checklists and Extensions
NOTE: does not include Combinations (of checklists and extensions) that use sop.
| Name | Description | Checklist/Extension |
|---|---|---|
| Mimag | Minimum Information About a Metagenome-Assembled Genome | Checklist |
| MigsEu | Minimal Information about a Genome Sequence: eukaryote | Checklist |
| MigsVi | Minimal Information about a Genome Sequence: virus | Checklist |
| Mims | Metagenome or Environmental | Checklist |
| MigsBa | Minimal Information about a Genome Sequence: cultured bacteria/archaea | Checklist |
| MimarksS | Minimal Information about a Marker Specimen: survey | Checklist |
| Misag | Minimum Information About a Single Amplified Genome | Checklist |
| Miuvig | Minimum Information About an Uncultivated Virus Genome | Checklist |
| Agriculture | A collection of terms appropriate when sequencing samples obtained in an agri... | Extension |
| MimarksC | Minimal Information about a Marker Specimen: specimen | Checklist |
| MigsPl | Minimal Information about a Genome Sequence: plasmid | Checklist |
| MigsOrg | Minimal Information about a Genome Sequence: organelle | Checklist |
Properties
- Range: String
- Cardinality: 0..*
Examples
| Value |
|---|
| http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/its/ |
Annotations
- Expected_value: reference to SOP
LinkML Source
name: sop
annotations:
Expected_value:
tag: Expected_value
value: reference to SOP
description: Standard operating procedures used in assembly and/or annotation of genomes,
metagenomes or environmental sequences
title: relevant standard operating procedures
examples:
- value: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/its/
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- procedures
string_serialization: '{PMID}|{DOI}|{URL}'
slot_uri: MIXS:0000090
multivalued: true
alias: sop
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- Agriculture
range: string