METPO
type: Ontology
version IRI: metpo.owl
creator: METPO Development Team
description: Microbial ecophysiological trait and phenotype ontology
issued: 2024-01-01
license: https://creativecommons.org/licenses/by/4.0/
modified: 2025-09-29
version info: 2025-12-12

definition
type: AnnotationProperty

term editor
type: AnnotationProperty

definition source
type: AnnotationProperty

description
type: AnnotationProperty

license
type: AnnotationProperty

title
type: AnnotationProperty

UCUM code
type: AnnotationProperty
comment: A UCUM code that identifies a unit of measure.

organism interacts with chemical
type: ObjectProperty
domain: microbe
range: chemical entity

assimilates
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: assimilation

Axiom
annotated source: assimilates
annotated property: hasRelatedSynonym
annotated target: assimilation
definition source: bacdive.dsmz.de

builds acid from
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: builds acid from

Axiom
annotated source: builds acid from
annotated property: hasRelatedSynonym
annotated target: builds acid from
definition source: bacdive.dsmz.de

builds base from
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: builds base from

Axiom
annotated source: builds base from
annotated property: hasRelatedSynonym
annotated target: builds base from
definition source: bacdive.dsmz.de

builds gas from
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: builds gas from

Axiom
annotated source: builds gas from
annotated property: hasRelatedSynonym
annotated target: builds gas from
definition source: bacdive.dsmz.de

uses as carbon source
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: carbon source

Axiom
annotated source: uses as carbon source
annotated property: hasRelatedSynonym
annotated target: carbon source
definition source: bacdive.dsmz.de

degrades
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: degradation

Axiom
annotated source: degrades
annotated property: hasRelatedSynonym
annotated target: degradation
definition source: bacdive.dsmz.de

uses as electron acceptor
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: electron acceptor

Axiom
annotated source: uses as electron acceptor
annotated property: hasRelatedSynonym
annotated target: electron acceptor
definition source: bacdive.dsmz.de

uses as electron donor
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: electron donor

Axiom
annotated source: uses as electron donor
annotated property: hasRelatedSynonym
annotated target: electron donor
definition source: bacdive.dsmz.de

uses as energy source
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: energy source

Axiom
annotated source: uses as energy source
annotated property: hasRelatedSynonym
annotated target: energy source
definition source: bacdive.dsmz.de

ferments
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: fermentation

Axiom
annotated source: ferments
annotated property: hasRelatedSynonym
annotated target: fermentation
definition source: bacdive.dsmz.de

uses for growth
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: growth

Axiom
annotated source: uses for growth
annotated property: hasRelatedSynonym
annotated target: growth
definition source: bacdive.dsmz.de

hydrolyzes
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: hydrolysis

Axiom
annotated source: hydrolyzes
annotated property: hasRelatedSynonym
annotated target: hydrolysis
definition source: bacdive.dsmz.de

uses as nitrogen source
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: nitrogen source

Axiom
annotated source: uses as nitrogen source
annotated property: hasRelatedSynonym
annotated target: nitrogen source
definition source: bacdive.dsmz.de

uses in other way
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: other

Axiom
annotated source: uses in other way
annotated property: hasRelatedSynonym
annotated target: other
definition source: bacdive.dsmz.de

oxidizes
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: oxidation

Axiom
annotated source: oxidizes
annotated property: hasRelatedSynonym
annotated target: oxidation
definition source: bacdive.dsmz.de

reduces
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: reduction

Axiom
annotated source: reduces
annotated property: hasRelatedSynonym
annotated target: reduction
definition source: bacdive.dsmz.de

requires for growth
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: required for growth

Axiom
annotated source: requires for growth
annotated property: hasRelatedSynonym
annotated target: required for growth
definition source: bacdive.dsmz.de

uses for respiration
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: respiration

Axiom
annotated source: uses for respiration
annotated property: hasRelatedSynonym
annotated target: respiration
definition source: bacdive.dsmz.de

uses as sulfur source
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: sulfur source

Axiom
annotated source: uses as sulfur source
annotated property: hasRelatedSynonym
annotated target: sulfur source
definition source: bacdive.dsmz.de

does not use for aerobic catabolization
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: aerobic catabolization

Axiom
annotated source: does not use for aerobic catabolization
annotated property: hasRelatedSynonym
annotated target: aerobic catabolization
definition source: bacdive.dsmz.de

does not use for aerobic growth
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: aerobic growth

Axiom
annotated source: does not use for aerobic growth
annotated property: hasRelatedSynonym
annotated target: aerobic growth
definition source: bacdive.dsmz.de

does not use for anaerobic catabolization
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: anaerobic catabolization

Axiom
annotated source: does not use for anaerobic catabolization
annotated property: hasRelatedSynonym
annotated target: anaerobic catabolization
definition source: bacdive.dsmz.de

does not use for anaerobic growth
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: anaerobic growth

Axiom
annotated source: does not use for anaerobic growth
annotated property: hasRelatedSynonym
annotated target: anaerobic growth
definition source: bacdive.dsmz.de

does not use for anaerobic growth in the dark
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: anaerobic growth in the dark

Axiom
annotated source: does not use for anaerobic growth in the dark
annotated property: hasRelatedSynonym
annotated target: anaerobic growth in the dark
definition source: bacdive.dsmz.de

does not use for anaerobic growth with light
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: anaerobic growth with light

Axiom
annotated source: does not use for anaerobic growth with light
annotated property: hasRelatedSynonym
annotated target: anaerobic growth with light
definition source: bacdive.dsmz.de

does not assimilate
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: assimilation

Axiom
annotated source: does not assimilate
annotated property: hasRelatedSynonym
annotated target: assimilation
definition source: bacdive.dsmz.de

does not build acid from
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: builds acid from

Axiom
annotated source: does not build acid from
annotated property: hasRelatedSynonym
annotated target: builds acid from
definition source: bacdive.dsmz.de

does not build base from
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: builds base from

Axiom
annotated source: does not build base from
annotated property: hasRelatedSynonym
annotated target: builds base from
definition source: bacdive.dsmz.de

does not build gas from
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: builds gas from

Axiom
annotated source: does not build gas from
annotated property: hasRelatedSynonym
annotated target: builds gas from
definition source: bacdive.dsmz.de

does not use as carbon source
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: carbon source

Axiom
annotated source: does not use as carbon source
annotated property: hasRelatedSynonym
annotated target: carbon source
definition source: bacdive.dsmz.de

uses for aerobic catabolization
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: aerobic catabolization

Axiom
annotated source: uses for aerobic catabolization
annotated property: hasRelatedSynonym
annotated target: aerobic catabolization
definition source: bacdive.dsmz.de

does not degrade
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: degradation

Axiom
annotated source: does not degrade
annotated property: hasRelatedSynonym
annotated target: degradation
definition source: bacdive.dsmz.de

does not use as electron acceptor
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: electron acceptor

Axiom
annotated source: does not use as electron acceptor
annotated property: hasRelatedSynonym
annotated target: electron acceptor
definition source: bacdive.dsmz.de

does not use as electron donor
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: electron donor

Axiom
annotated source: does not use as electron donor
annotated property: hasRelatedSynonym
annotated target: electron donor
definition source: bacdive.dsmz.de

does not use as energy source
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: energy source

Axiom
annotated source: does not use as energy source
annotated property: hasRelatedSynonym
annotated target: energy source
definition source: bacdive.dsmz.de

does not ferment
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: fermentation

Axiom
annotated source: does not ferment
annotated property: hasRelatedSynonym
annotated target: fermentation
definition source: bacdive.dsmz.de

does not use for growth
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: growth

Axiom
annotated source: does not use for growth
annotated property: hasRelatedSynonym
annotated target: growth
definition source: bacdive.dsmz.de

does not hydrolyze
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: hydrolysis

Axiom
annotated source: does not hydrolyze
annotated property: hasRelatedSynonym
annotated target: hydrolysis
definition source: bacdive.dsmz.de

does not use as nitrogen source
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: nitrogen source

Axiom
annotated source: does not use as nitrogen source
annotated property: hasRelatedSynonym
annotated target: nitrogen source
definition source: bacdive.dsmz.de

does not use in other way
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: other

Axiom
annotated source: does not use in other way
annotated property: hasRelatedSynonym
annotated target: other
definition source: bacdive.dsmz.de

does not oxidize
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: oxidation

Axiom
annotated source: does not oxidize
annotated property: hasRelatedSynonym
annotated target: oxidation
definition source: bacdive.dsmz.de

uses for aerobic growth
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: aerobic growth

Axiom
annotated source: uses for aerobic growth
annotated property: hasRelatedSynonym
annotated target: aerobic growth
definition source: bacdive.dsmz.de

does not reduce
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: reduction

Axiom
annotated source: does not reduce
annotated property: hasRelatedSynonym
annotated target: reduction
definition source: bacdive.dsmz.de

is not required for growth
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: required for growth

Axiom
annotated source: is not required for growth
annotated property: hasRelatedSynonym
annotated target: required for growth
definition source: bacdive.dsmz.de

does not use for respiration
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: respiration

Axiom
annotated source: does not use for respiration
annotated property: hasRelatedSynonym
annotated target: respiration
definition source: bacdive.dsmz.de

does not use as sulfur source
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: sulfur source

Axiom
annotated source: does not use as sulfur source
annotated property: hasRelatedSynonym
annotated target: sulfur source
definition source: bacdive.dsmz.de

uses for anaerobic catabolization
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: anaerobic catabolization

Axiom
annotated source: uses for anaerobic catabolization
annotated property: hasRelatedSynonym
annotated target: anaerobic catabolization
definition source: bacdive.dsmz.de

uses for anaerobic growth
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: anaerobic growth

Axiom
annotated source: uses for anaerobic growth
annotated property: hasRelatedSynonym
annotated target: anaerobic growth
definition source: bacdive.dsmz.de

uses for anaerobic growth in the dark
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: anaerobic growth in the dark

Axiom
annotated source: uses for anaerobic growth in the dark
annotated property: hasRelatedSynonym
annotated target: anaerobic growth in the dark
definition source: bacdive.dsmz.de

uses for anaerobic growth with light
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: anaerobic growth with light

Axiom
annotated source: uses for anaerobic growth with light
annotated property: hasRelatedSynonym
annotated target: anaerobic growth with light
definition source: bacdive.dsmz.de

has temperature observation
type: ObjectProperty
sub property of: has observation
domain: microbe
range: temperature observation
definition: Relates a microbe to a temperature observation.

has optimum temperature observation
type: ObjectProperty
sub property of: has temperature observation
domain: microbe
range: optimum temperature observation
definition: Relates a microbe to an optimum temperature observation.

has growth temperature observation
type: ObjectProperty
sub property of: has temperature observation
domain: microbe
range: growth temperature observation
definition: Relates a microbe to a growth temperature observation.

has range temperature observation
type: ObjectProperty
sub property of: has temperature observation
domain: microbe
range: temperature range observation
definition: Relates a microbe to a growth temperature range observation.

has temperature delta observation
type: ObjectProperty
sub property of: has temperature observation
domain: microbe
range: temperature delta observation
definition: Relates a microbe to a temperature tolerance breadth (delta) observation.

has quality
type: ObjectProperty
domain: microbe
range: quality

has phenotype
type: ObjectProperty
sub property of: has quality
domain: microbe
range: phenotype

capable of
type: ObjectProperty
domain: microbe
range: biological process

disproportionates
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: dismutates

Axiom
annotated source: disproportionates
annotated property: hasRelatedSynonym
annotated target: dismutates
definition source: bacdive.dsmz.de

produces
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: produces

Axiom
annotated source: produces
annotated property: hasRelatedSynonym
annotated target: produces
definition source: bacdive.dsmz.de

transports
type: ObjectProperty
sub property of: organism interacts with chemical

imports
type: ObjectProperty
sub property of: transports
domain: microbe
range: chemical entity

exports
type: ObjectProperty
sub property of: transports
domain: microbe
range: chemical entity

accumulates
type: ObjectProperty
sub property of: organism interacts with chemical

sequesters
type: ObjectProperty
sub property of: accumulates
domain: microbe
range: chemical entity

compartmentalizes
type: ObjectProperty
sub property of: accumulates
domain: microbe
range: chemical entity

does not disproportionate
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: dismutates

Axiom
annotated source: does not disproportionate
annotated property: hasRelatedSynonym
annotated target: dismutates
definition source: bacdive.dsmz.de

does not produce
type: ObjectProperty
sub property of: organism interacts with chemical
has related synonym: produces

Axiom
annotated source: does not produce
annotated property: hasRelatedSynonym
annotated target: produces
definition source: bacdive.dsmz.de

does not transport
type: ObjectProperty
sub property of: organism interacts with chemical

does not import
type: ObjectProperty
sub property of: does not transport
domain: microbe
range: chemical entity

does not export
type: ObjectProperty
sub property of: does not transport
domain: microbe
range: chemical entity

does not accumulate
type: ObjectProperty
sub property of: organism interacts with chemical

does not sequester
type: ObjectProperty
sub property of: does not accumulate
domain: microbe
range: chemical entity

does not compartmentalize
type: ObjectProperty
sub property of: does not accumulate
domain: microbe
range: chemical entity

has pH observation
type: ObjectProperty
sub property of: has observation
domain: microbe
range: pH observation
definition: Relates a microbe to a pH observation.

enzyme activity analyzed
type: ObjectProperty
domain: microbe
range: enzyme
has related synonym: Physiology and metabolism.enzymes.[].activity

Axiom
annotated source: enzyme activity analyzed
annotated property: hasRelatedSynonym
annotated target: Physiology and metabolism.enzymes.[].activity
definition source: bacdive.dsmz.de

shows activity of
type: ObjectProperty
sub property of: enzyme activity analyzed
domain: microbe
range: enzyme
has related synonym: Physiology and metabolism.enzymes.[].activity

Axiom
annotated source: shows activity of
annotated property: hasRelatedSynonym
annotated target: Physiology and metabolism.enzymes.[].activity
definition source: bacdive.dsmz.de

does not show activity of
type: ObjectProperty
sub property of: enzyme activity analyzed
domain: microbe
range: enzyme
has related synonym: Physiology and metabolism.enzymes.[].activity

Axiom
annotated source: does not show activity of
annotated property: hasRelatedSynonym
annotated target: Physiology and metabolism.enzymes.[].activity
definition source: bacdive.dsmz.de

has optimum pH observation
type: ObjectProperty
sub property of: has pH observation
domain: microbe
range: optimum pH observation
definition: Relates a microbe to an optimum pH observation.

has growth pH observation
type: ObjectProperty
sub property of: has pH observation
domain: microbe
range: growth pH observation
definition: Relates a microbe to a growth pH observation.

has range pH observation
type: ObjectProperty
sub property of: has pH observation
domain: microbe
range: pH range observation
definition: Relates a microbe to a growth pH range observation.

has pH delta observation
type: ObjectProperty
sub property of: has pH observation
domain: microbe
range: pH delta observation
definition: Relates a microbe to a pH tolerance breadth (delta) observation.

has NaCl observation
type: ObjectProperty
sub property of: has observation
domain: microbe
range: NaCl observation
definition: Relates a microbe to a NaCl observation.

has optimum NaCl observation
type: ObjectProperty
sub property of: has NaCl observation
domain: microbe
range: optimum NaCl observation
definition: Relates a microbe to an optimum NaCl observation.

has growth NaCl observation
type: ObjectProperty
sub property of: has NaCl observation
domain: microbe
range: growth NaCl observation
definition: Relates a microbe to a growth NaCl observation.

has range NaCl observation
type: ObjectProperty
sub property of: has NaCl observation
domain: microbe
range: NaCl range observation
definition: Relates a microbe to a growth NaCl range observation.

has NaCl delta observation
type: ObjectProperty
sub property of: has NaCl observation
domain: microbe
range: NaCl delta observation
definition: Relates a microbe to a NaCl tolerance breadth (delta) observation.

has observation
type: ObjectProperty
domain: microbe
range: observation

has oxygen observation
type: ObjectProperty
sub property of: has observation
domain: microbe
range: oxygen observation
definition: Relates a microbe to an oxygen observation.

has optimum oxygen observation
type: ObjectProperty
sub property of: has oxygen observation
domain: microbe
range: optimum oxygen observation
definition: Relates a microbe to an optimum oxygen observation.

has growth oxygen observation
type: ObjectProperty
sub property of: has oxygen observation
domain: microbe
range: growth oxygen observation
definition: Relates a microbe to a growth oxygen observation.

has range oxygen observation
type: ObjectProperty
sub property of: has oxygen observation
domain: microbe
range: oxygen range observation
definition: Relates a microbe to a growth oxygen range observation.

has oxygen delta observation
type: ObjectProperty
sub property of: has oxygen observation
domain: microbe
range: oxygen delta observation
definition: Relates a microbe to a oxygen tolerance breadth (delta) observation.

grows in
type: ObjectProperty
domain: microbe
range: growth medium
definition: A relation between a microbe and a growth medium indicating that the microbe has been demonstrated to grow in that medium under some set of conditions. This relation represents a generalization from experimental observations reported in the literature or databases; it does not imply that the microbe will grow in the medium under all conditions.

does not grow in
type: ObjectProperty
domain: microbe
range: growth medium
definition: A relation between a microbe and a growth medium indicating that the microbe has been demonstrated to fail to grow in that medium under some set of conditions. This relation represents a generalization from experimental observations reported in the literature or databases; it does not imply that the microbe cannot grow in the medium under any conditions.

has observed spot value
type: DatatypeProperty
sub property of: observation data property
domain: observation
range: decimal
definition: A reported temperature value (°C) for this observation.

has minimum observed value
type: DatatypeProperty
sub property of: observation data property
domain: observation
range: decimal
definition: The minimum temperature (°C) associated with this observation.

has maximum observed value
type: DatatypeProperty
sub property of: observation data property
domain: observation
range: decimal
definition: The maximum temperature (°C) associated with this observation.

has value comments
type: DatatypeProperty
sub property of: observation data property
domain: observation
range: string
definition: Free-text comments associated with this observation.

is negative data
type: DatatypeProperty
sub property of: observation data property
domain: observation
range: boolean
definition: True if this observation indicates no growth at the reported temperature (negative result).

observation data property
type: DatatypeProperty

has value
type: DatatypeProperty
range: decimal
definition: Relates any instance to a numerical value

phenotype
type: Class
subclass of: quality
definition: A quality that differentiates specific instances of a species from other instances of the same species.
term editor: Anthea Guo
term editor: Luke Wang

Axiom
annotated source: phenotype
annotated property: definition
annotated target: A quality that differentiates specific instances of a species from other instances of the same species.
definition source: PHIPO_0000505

metabolism
type: Class
subclass of: biological process
definition: A biological process that maintain life in an organism.
term editor: Anthea Guo

Axiom
annotated source: metabolism
annotated property: definition
annotated target: A biological process that maintain life in an organism.
definition source: GO_0008152
definition source: MetabolicProcess

GC content
type: Class
subclass of: quality
definition: A quality that is describing the percentage of guanine and cytosine nucleotides in genomic DNA, calculated as the ratio of GC base pairs to total base pairs.
term editor: Luke Wang

Axiom
annotated source: GC content
annotated property: definition
annotated target: A quality that is describing the percentage of guanine and cytosine nucleotides in genomic DNA, calculated as the ratio of GC base pairs to total base pairs.
definition source: GCContent

material entity
type: Class
definition: An object or portion of a substance or mixture of substances that consists of matter
term editor: Anthea Guo

Axiom
annotated source: material entity
annotated property: definition
annotated target: An object or portion of a substance or mixture of substances that consists of matter
definition source: BFO_0000040

quality
type: Class
definition: A characteristic of an entity that depends on the entity's existence, size, color, and physiological traits.

pH delta
type: Class
subclass of: pH phenotype with numerical limits
subclass of: delta phenotype with numerical limits

temperature delta
type: Class
subclass of: temperature phenotype with numerical limits
subclass of: delta phenotype with numerical limits

temperature optimum
type: Class
subclass of: temperature phenotype with numerical limits
subclass of: optimum phenotype with numerical limits
definition: A temperature phenotype with numerical limits that represents the conditions at which an organism exhibits the most efficient growth and reproduction.
term editor: Anthea Guo

Axiom
annotated source: temperature optimum
annotated property: definition
annotated target: A temperature phenotype with numerical limits that represents the conditions at which an organism exhibits the most efficient growth and reproduction.
definition source: OptimumTemperature

temperature range
type: Class
subclass of: temperature phenotype with numerical limits
subclass of: growth range phenotype with numerical limits

pH optimum
type: Class
subclass of: pH phenotype with numerical limits
subclass of: optimum phenotype with numerical limits
definition: A pH phenotype with numerical limits that represents the conditions at which an organism exhibits the most efficient growth and reproduction.

pH range
type: Class
subclass of: pH phenotype with numerical limits
subclass of: growth range phenotype with numerical limits
term editor: Luke Wang

NaCl optimum
type: Class
subclass of: salinity phenotype with numerical limits
subclass of: optimum phenotype with numerical limits
definition: A salinity phenotype with numerical limits that supports the most efficient growth and reproduction of an organism.
term editor: Luke Wang

Axiom
annotated source: NaCl optimum
annotated property: definition
annotated target: A salinity phenotype with numerical limits that supports the most efficient growth and reproduction of an organism.
definition source: OptimumSalinity

NaCl range
type: Class
subclass of: salinity phenotype with numerical limits
subclass of: growth range phenotype with numerical limits
term editor: Anthea Guo

NaCl delta
type: Class
subclass of: salinity phenotype with numerical limits
subclass of: delta phenotype with numerical limits

GC low
type: Class
equivalent class: Class
  intersection of: GC content
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        max inclusive: 42.65
subclass of: GC content
has related synonym: GC_42.65_57.0
range max: 42.65

Axiom
annotated source: GC low
annotated property: hasRelatedSynonym
annotated target: GC_42.65_57.0
definition source: BactoTraits databaseV2 Jun2022.csv

GC mid1
type: Class
equivalent class: Class
  intersection of: GC content
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 42.65
      with restrictions:
        max inclusive: 57
subclass of: GC content
has related synonym: GC_>66.3
range max: 57
range min: 42.65

Axiom
annotated source: GC mid1
annotated property: hasRelatedSynonym
annotated target: GC_>66.3
definition source: BactoTraits databaseV2 Jun2022.csv

GC mid2
type: Class
equivalent class: Class
  intersection of: GC content
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 57
      with restrictions:
        max inclusive: 66.3
subclass of: GC content
has related synonym: GC_57.0_66.3
range max: 66.3
range min: 57

Axiom
annotated source: GC mid2
annotated property: hasRelatedSynonym
annotated target: GC_57.0_66.3
definition source: BactoTraits databaseV2 Jun2022.csv

GC high
type: Class
equivalent class: Class
  intersection of: GC content
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 66.3
subclass of: GC content
has related synonym: GC_<=42.65
range min: 66.3

Axiom
annotated source: GC high
annotated property: hasRelatedSynonym
annotated target: GC_<=42.65
definition source: BactoTraits databaseV2 Jun2022.csv

temperature optimum very low
type: Class
equivalent class: Class
  intersection of: temperature optimum
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        max inclusive: 10
subclass of: temperature optimum
UCUM code: Cel
has exact synonym: Psychrophile
has related synonym: TO_<=10
range max: 10

Axiom
annotated source: temperature optimum very low
annotated property: hasRelatedSynonym
annotated target: TO_<=10
definition source: BactoTraits databaseV2 Jun2022.csv

temperature optimum low
type: Class
equivalent class: Class
  intersection of: temperature optimum
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 10
      with restrictions:
        max inclusive: 22
subclass of: temperature optimum
UCUM code: Cel
has exact synonym: Psychrophile
has exact synonym: Psychrotolerant
has related synonym: TO_10_to_22
range max: 22
range min: 10

Axiom
annotated source: temperature optimum low
annotated property: hasRelatedSynonym
annotated target: TO_10_to_22
definition source: BactoTraits databaseV2 Jun2022.csv

temperature optimum mid1
type: Class
equivalent class: Class
  intersection of: temperature optimum
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 22
      with restrictions:
        max inclusive: 27
subclass of: temperature optimum
UCUM code: Cel
has exact synonym: Mesophilie
has related synonym: TO_22_to_27
range max: 27
range min: 22

Axiom
annotated source: temperature optimum mid1
annotated property: hasRelatedSynonym
annotated target: TO_22_to_27
definition source: BactoTraits databaseV2 Jun2022.csv

temperature optimum mid2
type: Class
equivalent class: Class
  intersection of: temperature optimum
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 27
      with restrictions:
        max inclusive: 30
subclass of: temperature optimum
UCUM code: Cel
has exact synonym: Mesophilie
has related synonym: TO_27_to_30
range max: 30
range min: 27

Axiom
annotated source: temperature optimum mid2
annotated property: hasRelatedSynonym
annotated target: TO_27_to_30
definition source: BactoTraits databaseV2 Jun2022.csv

temperature optimum mid3
type: Class
equivalent class: Class
  intersection of: temperature optimum
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 30
      with restrictions:
        max inclusive: 34
subclass of: temperature optimum
UCUM code: Cel
has exact synonym: Mesophilie
has related synonym: TO_30_to_34
range max: 34
range min: 30

Axiom
annotated source: temperature optimum mid3
annotated property: hasRelatedSynonym
annotated target: TO_30_to_34
definition source: BactoTraits databaseV2 Jun2022.csv

temperature optimum mid4
type: Class
equivalent class: Class
  intersection of: temperature optimum
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 34
      with restrictions:
        max inclusive: 40
subclass of: temperature optimum
UCUM code: Cel
has exact synonym: Mesophilie
has related synonym: TO_34_to_40
range max: 40
range min: 34

Axiom
annotated source: temperature optimum mid4
annotated property: hasRelatedSynonym
annotated target: TO_34_to_40
definition source: BactoTraits databaseV2 Jun2022.csv

temperature optimum high
type: Class
equivalent class: Class
  intersection of: temperature optimum
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 40
subclass of: temperature optimum
UCUM code: Cel
has exact synonym: Thermophile
has related synonym: TO_>40
range min: 40

Axiom
annotated source: temperature optimum high
annotated property: hasRelatedSynonym
annotated target: TO_>40
definition source: BactoTraits databaseV2 Jun2022.csv

temperature range very low
type: Class
equivalent class: Class
  intersection of: temperature range
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        max inclusive: 10
subclass of: temperature range
UCUM code: Cel
has exact synonym: Psychrophile
has related synonym: TR_<=10
range max: 10

Axiom
annotated source: temperature range very low
annotated property: hasRelatedSynonym
annotated target: TR_<=10
definition source: BactoTraits databaseV2 Jun2022.csv

temperature range low
type: Class
equivalent class: Class
  intersection of: temperature range
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 10
      with restrictions:
        max inclusive: 22
subclass of: temperature range
UCUM code: Cel
has exact synonym: Psychrophile
has exact synonym: Psychrotolerant
has related synonym: TR_10_to_22
range max: 22
range min: 10

Axiom
annotated source: temperature range low
annotated property: hasRelatedSynonym
annotated target: TR_10_to_22
definition source: BactoTraits databaseV2 Jun2022.csv

temperature range mid1
type: Class
equivalent class: Class
  intersection of: temperature range
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 22
      with restrictions:
        max inclusive: 27
subclass of: temperature range
UCUM code: Cel
has exact synonym: Mesophilie
has related synonym: TR_22_to_27
range max: 27
range min: 22

Axiom
annotated source: temperature range mid1
annotated property: hasRelatedSynonym
annotated target: TR_22_to_27
definition source: BactoTraits databaseV2 Jun2022.csv

temperature range mid2
type: Class
equivalent class: Class
  intersection of: temperature range
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 27
      with restrictions:
        max inclusive: 30
subclass of: temperature range
UCUM code: Cel
has exact synonym: Mesophilie
has related synonym: TR_27_to_30
range max: 30
range min: 27

Axiom
annotated source: temperature range mid2
annotated property: hasRelatedSynonym
annotated target: TR_27_to_30
definition source: BactoTraits databaseV2 Jun2022.csv

temperature range mid3
type: Class
equivalent class: Class
  intersection of: temperature range
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 30
      with restrictions:
        max inclusive: 34
subclass of: temperature range
UCUM code: Cel
has exact synonym: Mesophilie
has related synonym: TR_30_to_34
range max: 34
range min: 30

Axiom
annotated source: temperature range mid3
annotated property: hasRelatedSynonym
annotated target: TR_30_to_34
definition source: BactoTraits databaseV2 Jun2022.csv

temperature range mid4
type: Class
equivalent class: Class
  intersection of: temperature range
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 34
      with restrictions:
        max inclusive: 40
subclass of: temperature range
UCUM code: Cel
has exact synonym: Mesophilie
has related synonym: TR_34_to_40
range max: 40
range min: 34

Axiom
annotated source: temperature range mid4
annotated property: hasRelatedSynonym
annotated target: TR_34_to_40
definition source: BactoTraits databaseV2 Jun2022.csv

temperature range high
type: Class
equivalent class: Class
  intersection of: temperature range
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 40
subclass of: temperature range
UCUM code: Cel
has exact synonym: Thermophile
has related synonym: TR_>40
range min: 40

Axiom
annotated source: temperature range high
annotated property: hasRelatedSynonym
annotated target: TR_>40
definition source: BactoTraits databaseV2 Jun2022.csv

pH optimum low
type: Class
equivalent class: Class
  intersection of: pH optimum
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 0
      with restrictions:
        max inclusive: 6
subclass of: pH optimum
has exact synonym: Acid Tolerant
has exact synonym: Acidophile
has exact synonym: Extreme Acidophile
has exact synonym: Facultative acidophile
has exact synonym: Obligative acidophile
has related synonym: pHO_0_to_6
range max: 6
range min: 0

Axiom
annotated source: pH optimum low
annotated property: hasRelatedSynonym
annotated target: pHO_0_to_6
definition source: BactoTraits databaseV2 Jun2022.csv

pH optimum mid1
type: Class
equivalent class: Class
  intersection of: pH optimum
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 6
      with restrictions:
        max inclusive: 7
subclass of: pH optimum
has exact synonym: Alkali Tolerant
has exact synonym: Neutrophile
has related synonym: pHO_6_to_7
range max: 7
range min: 6

Axiom
annotated source: pH optimum mid1
annotated property: hasRelatedSynonym
annotated target: pHO_6_to_7
definition source: BactoTraits databaseV2 Jun2022.csv

pH optimum mid2
type: Class
equivalent class: Class
  intersection of: pH optimum
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 7
      with restrictions:
        max inclusive: 8
subclass of: pH optimum
has exact synonym: Alkali Tolerant
has exact synonym: Alkaliphile
has exact synonym: Neutrophile
has related synonym: pHO_7_to_8
range max: 8
range min: 7

Axiom
annotated source: pH optimum mid2
annotated property: hasRelatedSynonym
annotated target: pHO_7_to_8
definition source: BactoTraits databaseV2 Jun2022.csv

pH optimum high
type: Class
equivalent class: Class
  intersection of: pH optimum
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 8
      with restrictions:
        max inclusive: 14
subclass of: pH optimum
has exact synonym: Alkali Tolerant
has exact synonym: Alkaliphile
has exact synonym: Extreme Alkaliphile
has related synonym: pHO_8_to_14
range max: 14
range min: 8

Axiom
annotated source: pH optimum high
annotated property: hasRelatedSynonym
annotated target: pHO_8_to_14
definition source: BactoTraits databaseV2 Jun2022.csv

pH range very low
type: Class
equivalent class: Class
  intersection of: pH range
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 0
      with restrictions:
        max inclusive: 4
subclass of: pH range
has exact synonym: Acid Tolerant
has exact synonym: Acidophile
has exact synonym: Extreme Acidophile
has exact synonym: Facultative acidophile
has exact synonym: Obligative acidophile
has related synonym: pHR_0_to_4
range max: 4
range min: 0

Axiom
annotated source: pH range very low
annotated property: hasRelatedSynonym
annotated target: pHR_0_to_4
definition source: BactoTraits databaseV2 Jun2022.csv

pH range low
type: Class
equivalent class: Class
  intersection of: pH range
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 4
      with restrictions:
        max inclusive: 6
subclass of: pH range
has exact synonym: Acid Tolerant
has exact synonym: Acidophile
has exact synonym: Facultative acidophile
has exact synonym: Obligative acidophile
has related synonym: pHR_4_to_6
range max: 6
range min: 4

Axiom
annotated source: pH range low
annotated property: hasRelatedSynonym
annotated target: pHR_4_to_6
definition source: BactoTraits databaseV2 Jun2022.csv

pH range mid1
type: Class
equivalent class: Class
  intersection of: pH range
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 6
      with restrictions:
        max inclusive: 7
subclass of: pH range
has exact synonym: Alkali Tolerant
has exact synonym: Facultative acidophile
has exact synonym: Neutrophile
has related synonym: pHR_6_to_7
range max: 7
range min: 6

Axiom
annotated source: pH range mid1
annotated property: hasRelatedSynonym
annotated target: pHR_6_to_7
definition source: BactoTraits databaseV2 Jun2022.csv

pH range mid2
type: Class
equivalent class: Class
  intersection of: pH range
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 7
      with restrictions:
        max inclusive: 8
subclass of: pH range
has exact synonym: Alkali Tolerant
has exact synonym: Alkaliphile
has exact synonym: Facultative acidophile
has exact synonym: Neutrophile
has related synonym: pHR_7_to_8
range max: 8
range min: 7

Axiom
annotated source: pH range mid2
annotated property: hasRelatedSynonym
annotated target: pHR_7_to_8
definition source: BactoTraits databaseV2 Jun2022.csv

pH range mid3
type: Class
equivalent class: Class
  intersection of: pH range
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 8
      with restrictions:
        max inclusive: 10
subclass of: pH range
has exact synonym: Alkali Tolerant
has exact synonym: Alkaliphile
has exact synonym: Extreme Alkaliphile
has exact synonym: Facultative acidophile
has related synonym: pHR_8_to_10
range max: 10
range min: 8

Axiom
annotated source: pH range mid3
annotated property: hasRelatedSynonym
annotated target: pHR_8_to_10
definition source: BactoTraits databaseV2 Jun2022.csv

pH range high
type: Class
equivalent class: Class
  intersection of: pH range
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 10
      with restrictions:
        max inclusive: 14
subclass of: pH range
has exact synonym: Alkali Tolerant
has exact synonym: Alkaliphile
has exact synonym: Extreme Alkaliphile
has related synonym: 10_to_14
range max: 14
range min: 10

Axiom
annotated source: pH range high
annotated property: hasRelatedSynonym
annotated target: 10_to_14
definition source: BactoTraits databaseV2 Jun2022.csv

NaCl optimum low
type: Class
equivalent class: Class
  intersection of: NaCl optimum
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        max inclusive: 1
subclass of: NaCl optimum
UCUM code: %
has exact synonym: Halotolerant
has exact synonym: Non-halophile
has related synonym: NaO_<=1
range max: 1

Axiom
annotated source: NaCl optimum low
annotated property: hasRelatedSynonym
annotated target: NaO_<=1
definition source: BactoTraits databaseV2 Jun2022.csv

NaCl optimum mid1
type: Class
equivalent class: Class
  intersection of: NaCl optimum
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 1
      with restrictions:
        max inclusive: 3
subclass of: NaCl optimum
UCUM code: %
has exact synonym: Halotolerant
has exact synonym: Slight halophile
has related synonym: NaO_1_to_3
range max: 3
range min: 1

Axiom
annotated source: NaCl optimum mid1
annotated property: hasRelatedSynonym
annotated target: NaO_1_to_3
definition source: BactoTraits databaseV2 Jun2022.csv

NaCl optimum mid2
type: Class
equivalent class: Class
  intersection of: NaCl optimum
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 3
      with restrictions:
        max inclusive: 8
subclass of: NaCl optimum
UCUM code: %
has exact synonym: Halotolerant
has exact synonym: Moderate halophile
has related synonym: NaO_3_to_8
range max: 8
range min: 3

Axiom
annotated source: NaCl optimum mid2
annotated property: hasRelatedSynonym
annotated target: NaO_3_to_8
definition source: BactoTraits databaseV2 Jun2022.csv

NaCl optimum high
type: Class
equivalent class: Class
  intersection of: NaCl optimum
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 8
subclass of: NaCl optimum
UCUM code: %
has exact synonym: Extreme halophile
has related synonym: NaO_>8
range min: 8

Axiom
annotated source: NaCl optimum high
annotated property: hasRelatedSynonym
annotated target: NaO_>8
definition source: BactoTraits databaseV2 Jun2022.csv

NaCl range low
type: Class
equivalent class: Class
  intersection of: NaCl range
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        max inclusive: 1
subclass of: NaCl range
UCUM code: %
has exact synonym: Halotolerant
has exact synonym: Non-halophile
has related synonym: NaR_<=1
range max: 1

Axiom
annotated source: NaCl range low
annotated property: hasRelatedSynonym
annotated target: NaR_<=1
definition source: BactoTraits databaseV2 Jun2022.csv

NaCl range mid1
type: Class
equivalent class: Class
  intersection of: NaCl range
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 1
      with restrictions:
        max inclusive: 3
subclass of: NaCl range
UCUM code: %
has exact synonym: Halotolerant
has exact synonym: Slight halophile
has related synonym: NaR_1_to_3
range max: 3
range min: 1

Axiom
annotated source: NaCl range mid1
annotated property: hasRelatedSynonym
annotated target: NaR_1_to_3
definition source: BactoTraits databaseV2 Jun2022.csv

NaCl range mid2
type: Class
equivalent class: Class
  intersection of: NaCl range
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 3
      with restrictions:
        max inclusive: 8
subclass of: NaCl range
UCUM code: %
has exact synonym: Halotolerant
has exact synonym: Moderate halophile
has related synonym: NaR_3_to_8
range max: 8
range min: 3

Axiom
annotated source: NaCl range mid2
annotated property: hasRelatedSynonym
annotated target: NaR_3_to_8
definition source: BactoTraits databaseV2 Jun2022.csv

NaCl range high
type: Class
equivalent class: Class
  intersection of: NaCl range
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 8
subclass of: NaCl range
UCUM code: %
has exact synonym: Extreme halophile
has related synonym: NaR_>8
range min: 8

Axiom
annotated source: NaCl range high
annotated property: hasRelatedSynonym
annotated target: NaR_>8
definition source: BactoTraits databaseV2 Jun2022.csv

pH delta very low
type: Class
equivalent class: Class
  intersection of: pH delta
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        max inclusive: 1
subclass of: pH delta
has related synonym: pHd_<=1
range max: 1

Axiom
annotated source: pH delta very low
annotated property: hasRelatedSynonym
annotated target: pHd_<=1
definition source: BactoTraits databaseV2 Jun2022.csv

pH delta low
type: Class
equivalent class: Class
  intersection of: pH delta
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 1
      with restrictions:
        max inclusive: 2
subclass of: pH delta
has related synonym: pHd_1_2
range max: 2
range min: 1

Axiom
annotated source: pH delta low
annotated property: hasRelatedSynonym
annotated target: pHd_1_2
definition source: BactoTraits databaseV2 Jun2022.csv

pH delta mid1
type: Class
equivalent class: Class
  intersection of: pH delta
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 2
      with restrictions:
        max inclusive: 3
subclass of: pH delta
has related synonym: pHd_2_3
range max: 3
range min: 2

Axiom
annotated source: pH delta mid1
annotated property: hasRelatedSynonym
annotated target: pHd_2_3
definition source: BactoTraits databaseV2 Jun2022.csv

pH delta mid2
type: Class
equivalent class: Class
  intersection of: pH delta
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 3
      with restrictions:
        max inclusive: 4
subclass of: pH delta
has related synonym: pHd_3_4
range max: 4
range min: 3

Axiom
annotated source: pH delta mid2
annotated property: hasRelatedSynonym
annotated target: pHd_3_4
definition source: BactoTraits databaseV2 Jun2022.csv

pH delta mid3
type: Class
equivalent class: Class
  intersection of: pH delta
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 4
      with restrictions:
        max inclusive: 5
subclass of: pH delta
has related synonym: pHd_4_5
range max: 5
range min: 4

Axiom
annotated source: pH delta mid3
annotated property: hasRelatedSynonym
annotated target: pHd_4_5
definition source: BactoTraits databaseV2 Jun2022.csv

pH delta high
type: Class
equivalent class: Class
  intersection of: pH delta
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 5
      with restrictions:
        max inclusive: 9
subclass of: pH delta
has related synonym: pHd_5_9
range max: 9
range min: 5

Axiom
annotated source: pH delta high
annotated property: hasRelatedSynonym
annotated target: pHd_5_9
definition source: BactoTraits databaseV2 Jun2022.csv

NaCl delta low
type: Class
equivalent class: Class
  intersection of: NaCl delta
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        max inclusive: 1
subclass of: NaCl delta
UCUM code: %
has related synonym: Nad_<=1
range max: 1

Axiom
annotated source: NaCl delta low
annotated property: hasRelatedSynonym
annotated target: Nad_<=1
definition source: BactoTraits databaseV2 Jun2022.csv

NaCl delta mid1
type: Class
equivalent class: Class
  intersection of: NaCl delta
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 1
      with restrictions:
        max inclusive: 3
subclass of: NaCl delta
UCUM code: %
has related synonym: Nad_1_3
range max: 3
range min: 1

Axiom
annotated source: NaCl delta mid1
annotated property: hasRelatedSynonym
annotated target: Nad_1_3
definition source: BactoTraits databaseV2 Jun2022.csv

NaCl delta mid2
type: Class
equivalent class: Class
  intersection of: NaCl delta
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 3
      with restrictions:
        max inclusive: 8
subclass of: NaCl delta
UCUM code: %
has related synonym: Nad_3_8
range max: 8
range min: 3

Axiom
annotated source: NaCl delta mid2
annotated property: hasRelatedSynonym
annotated target: Nad_3_8
definition source: BactoTraits databaseV2 Jun2022.csv

NaCl delta high
type: Class
equivalent class: Class
  intersection of: NaCl delta
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        max inclusive: 8
subclass of: NaCl delta
UCUM code: %
has related synonym: Nad_>8
range max: 8

Axiom
annotated source: NaCl delta high
annotated property: hasRelatedSynonym
annotated target: Nad_>8
definition source: BactoTraits databaseV2 Jun2022.csv

temperature delta very low
type: Class
equivalent class: Class
  intersection of: temperature delta
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 1
      with restrictions:
        max inclusive: 5
subclass of: temperature delta
UCUM code: Cel
has related synonym: Td_1_5
range max: 5
range min: 1

Axiom
annotated source: temperature delta very low
annotated property: hasRelatedSynonym
annotated target: Td_1_5
definition source: BactoTraits databaseV2 Jun2022.csv

temperature delta low
type: Class
equivalent class: Class
  intersection of: temperature delta
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 5
      with restrictions:
        max inclusive: 10
subclass of: temperature delta
UCUM code: Cel
has related synonym: Td_5_10
range max: 10
range min: 5

Axiom
annotated source: temperature delta low
annotated property: hasRelatedSynonym
annotated target: Td_5_10
definition source: BactoTraits databaseV2 Jun2022.csv

temperature delta mid1
type: Class
equivalent class: Class
  intersection of: temperature delta
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 10
      with restrictions:
        max inclusive: 20
subclass of: temperature delta
UCUM code: Cel
has related synonym: Td_10_20
range max: 20
range min: 10

Axiom
annotated source: temperature delta mid1
annotated property: hasRelatedSynonym
annotated target: Td_10_20
definition source: BactoTraits databaseV2 Jun2022.csv

temperature delta mid2
type: Class
equivalent class: Class
  intersection of: temperature delta
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 20
      with restrictions:
        max inclusive: 30
subclass of: temperature delta
UCUM code: Cel
has related synonym: Td_20_30
range max: 30
range min: 20

Axiom
annotated source: temperature delta mid2
annotated property: hasRelatedSynonym
annotated target: Td_20_30
definition source: BactoTraits databaseV2 Jun2022.csv

temperature delta high
type: Class
equivalent class: Class
  intersection of: temperature delta
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 30
subclass of: temperature delta
UCUM code: Cel
has related synonym: Td_>30
range min: 30

Axiom
annotated source: temperature delta high
annotated property: hasRelatedSynonym
annotated target: Td_>30
definition source: BactoTraits databaseV2 Jun2022.csv

microbe
type: Class
subclass of: material entity
definition: A material entity that is too small to be viewed by the unaided eye, typically requiring microscopy for observation.
term editor: Luke Wang
comment: METPO is primarily concerned with unicellular, prokaryotic life forms, i.e. bacteria and archea, including the cases of giant bacteria like Thiomargarita

Axiom
annotated source: microbe
annotated property: definition
annotated target: A material entity that is too small to be viewed by the unaided eye, typically requiring microscopy for observation.
definition source: OHMI_0000460

chemical entity
type: Class
subclass of: material entity
definition: A material entity that is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.

Axiom
annotated source: chemical entity
annotated property: definition
annotated target: A material entity that is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances.
definition source: CHEBI_24431

enzyme
type: Class
subclass of: material entity

pH phenotype with numerical limits
type: Class
subclass of: phenotype
definition: A phenotype characterized by specific pH values or ranges that define growth or activity limits.

salinity phenotype with numerical limits
type: Class
subclass of: phenotype
definition: A phenotype characterized by specific salt concentration values or ranges that define growth or activity limits.

temperature phenotype with numerical limits
type: Class
subclass of: phenotype
definition: A phenotype characterized by specific temperature values or ranges that define growth or activity limits.

delta phenotype with numerical limits
type: Class
subclass of: phenotype
definition: A phenotype characterized by the difference between maximum and minimum values of a growth parameter.

growth range phenotype with numerical limits
type: Class
subclass of: phenotype
definition: A phenotype characterized by the span of values within which an organism can maintain growth.

optimum phenotype with numerical limits
type: Class
subclass of: phenotype
definition: A phenotype characterized by the value at which an organism exhibits maximum growth rate or activity.

oxygen preference
type: Class
subclass of: phenotype
definition: A phenotype that is relating to an organism's oxygen requirements or tolerance for growth.
has related synonym: Physiology and metabolism.oxygen tolerance.oxygen tolerance
has related synonym: metabolism

Axiom
annotated source: oxygen preference
annotated property: definition
annotated target: A phenotype that is relating to an organism's oxygen requirements or tolerance for growth.
definition source: UPHENO_0049673
definition source: OxygenTolerance

Axiom
annotated source: oxygen preference
annotated property: hasRelatedSynonym
annotated target: Physiology and metabolism.oxygen tolerance.oxygen tolerance
definition source: bacdive.dsmz.de

Axiom
annotated source: oxygen preference
annotated property: hasRelatedSynonym
annotated target: metabolism
definition source: bacteria archaea traits

aerobic
type: Class
subclass of: oxygen preference
definition: An oxygen preference in which growth occurs in the presence of molecular oxygen (O₂), typically using O₂ as the terminal electron acceptor.
has related synonym: Ox_aerobic
has related synonym: aerobe
has related synonym: aerobic

Axiom
annotated source: aerobic
annotated property: definition
annotated target: An oxygen preference in which growth occurs in the presence of molecular oxygen (O₂), typically using O₂ as the terminal electron acceptor.
definition source: ECOCORE_00000173
definition source: OMP_0005253

Axiom
annotated source: aerobic
annotated property: hasRelatedSynonym
annotated target: Ox_aerobic
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: aerobic
annotated property: hasRelatedSynonym
annotated target: aerobe
definition source: bacdive.dsmz.de

Axiom
annotated source: aerobic
annotated property: hasRelatedSynonym
annotated target: aerobic
definition source: bacteria archaea traits

anaerobic
type: Class
subclass of: oxygen preference
definition: An oxygen preference in which growth occurs in the absence of molecular oxygen (O₂).
has related synonym: Ox_anaerobic
has related synonym: anaerobe
has related synonym: anaerobic

Axiom
annotated source: anaerobic
annotated property: definition
annotated target: An oxygen preference in which growth occurs in the absence of molecular oxygen (O₂).
definition source: MICRO_0000495

Axiom
annotated source: anaerobic
annotated property: hasRelatedSynonym
annotated target: Ox_anaerobic
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: anaerobic
annotated property: hasRelatedSynonym
annotated target: anaerobe
definition source: bacdive.dsmz.de

Axiom
annotated source: anaerobic
annotated property: hasRelatedSynonym
annotated target: anaerobic
definition source: bacteria archaea traits

microaerophilic
type: Class
subclass of: oxygen preference
definition: An oxygen preference that requires molecular oxygen (O₂) at concentrations lower than atmospheric.
has related synonym: Ox_microerophile
has related synonym: microaerophile
has related synonym: microaerophilic

Axiom
annotated source: microaerophilic
annotated property: definition
annotated target: An oxygen preference that requires molecular oxygen (O₂) at concentrations lower than atmospheric.
definition source: ECOCORE_00000180
definition source: MICRO_0000515
definition source: OMP_0005254

Axiom
annotated source: microaerophilic
annotated property: hasRelatedSynonym
annotated target: Ox_microerophile
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: microaerophilic
annotated property: hasRelatedSynonym
annotated target: microaerophile
definition source: bacdive.dsmz.de

Axiom
annotated source: microaerophilic
annotated property: hasRelatedSynonym
annotated target: microaerophilic
definition source: bacteria archaea traits

facultatively anaerobic
type: Class
subclass of: oxygen preference
definition: An oxygen preference in which growth can occur with or without molecular oxygen (O₂).
has related synonym: facultative
has related synonym: facultative anaerobe

Axiom
annotated source: facultatively anaerobic
annotated property: definition
annotated target: An oxygen preference in which growth can occur with or without molecular oxygen (O₂).
definition source: MICRO_0001520
definition source: OMP_0000087

Axiom
annotated source: facultatively anaerobic
annotated property: hasRelatedSynonym
annotated target: facultative
definition source: bacteria archaea traits

Axiom
annotated source: facultatively anaerobic
annotated property: hasRelatedSynonym
annotated target: facultative anaerobe
definition source: bacdive.dsmz.de

obligately aerobic
type: Class
subclass of: oxygen preference
definition: An oxygen preference that requires molecular oxygen (O₂) for growth.
has related synonym: obligate aerobe
has related synonym: obligate aerobic

Axiom
annotated source: obligately aerobic
annotated property: definition
annotated target: An oxygen preference that requires molecular oxygen (O₂) for growth.
definition source: MICRO_0000516

Axiom
annotated source: obligately aerobic
annotated property: hasRelatedSynonym
annotated target: obligate aerobe
definition source: bacdive.dsmz.de

Axiom
annotated source: obligately aerobic
annotated property: hasRelatedSynonym
annotated target: obligate aerobic
definition source: bacteria archaea traits

obligately anaerobic
type: Class
subclass of: oxygen preference
definition: An oxygen preference in which molecular oxygen (O₂) inhibits or prevents growth.
has related synonym: obligate anaerobe
has related synonym: obligate anaerobic

Axiom
annotated source: obligately anaerobic
annotated property: definition
annotated target: An oxygen preference in which molecular oxygen (O₂) inhibits or prevents growth.
definition source: MICRO_0000504

Axiom
annotated source: obligately anaerobic
annotated property: hasRelatedSynonym
annotated target: obligate anaerobe
definition source: bacdive.dsmz.de

Axiom
annotated source: obligately anaerobic
annotated property: hasRelatedSynonym
annotated target: obligate anaerobic
definition source: bacteria archaea traits

facultatively aerobic
type: Class
subclass of: oxygen preference
definition: An oxygen preference in which growth can occur without oxygen but is capable of aerobic growth.
has related synonym: facultative
has related synonym: facultative aerobe

Axiom
annotated source: facultatively aerobic
annotated property: definition
annotated target: An oxygen preference in which growth can occur without oxygen but is capable of aerobic growth.
definition source: ECOCORE_00000177
definition source: OMP_0000087

Axiom
annotated source: facultatively aerobic
annotated property: hasRelatedSynonym
annotated target: facultative
definition source: bacteria archaea traits

Axiom
annotated source: facultatively aerobic
annotated property: hasRelatedSynonym
annotated target: facultative aerobe
definition source: bacdive.dsmz.de

aerotolerant
type: Class
subclass of: oxygen preference
definition: An oxygen preference that does not use O₂ for growth but tolerates its presence.
has related synonym: aerotolerant

Axiom
annotated source: aerotolerant
annotated property: definition
annotated target: An oxygen preference that does not use O₂ for growth but tolerates its presence.
definition source: MICRO_0000502

Axiom
annotated source: aerotolerant
annotated property: hasRelatedSynonym
annotated target: aerotolerant
definition source: bacdive.dsmz.de

microaerotolerant
type: Class
subclass of: oxygen preference
definition: An oxygen preference that tolerates low levels of molecular oxygen (O₂) without requiring it.
has related synonym: microaerotolerant

Axiom
annotated source: microaerotolerant
annotated property: definition
annotated target: An oxygen preference that tolerates low levels of molecular oxygen (O₂) without requiring it.
definition source: ECOCORE_00000180
definition source: ECOCORE_00000181
definition source: OMP_0000087
definition source: OMP_0000105

Axiom
annotated source: microaerotolerant
annotated property: hasRelatedSynonym
annotated target: microaerotolerant
definition source: bacdive.dsmz.de

strictly anaerobic
type: Class
subclass of: obligately anaerobic
definition: An obligately anaerobic where a microorganism does not grow in the presence of oxygen gas (O2).
has related synonym: strictly anaerobic

Axiom
annotated source: strictly anaerobic
annotated property: definition
annotated target: An obligately anaerobic where a microorganism does not grow in the presence of oxygen gas (O2).
definition source: OMP_0000184

Axiom
annotated source: strictly anaerobic
annotated property: hasRelatedSynonym
annotated target: strictly anaerobic
definition source: bacteria archaea traits

facultative oxygen preference
type: Class
subclass of: oxygen preference
definition: An oxygen preference that describes a microorganism that can grow with or without molecular oxygen.
has related synonym: Ox_facultative_aerobe_anaerobe

Axiom
annotated source: facultative oxygen preference
annotated property: definition
annotated target: An oxygen preference that describes a microorganism that can grow with or without molecular oxygen.
definition source: OMP_0000087

Axiom
annotated source: facultative oxygen preference
annotated property: hasRelatedSynonym
annotated target: Ox_facultative_aerobe_anaerobe
definition source: BactoTraits databaseV2 Jun2022.csv

temperature preference
type: Class
subclass of: phenotype
definition: A phenotype that describes characteristic growth with respect to environmental temperature.
has related synonym: Physiology and metabolism.culture temp.temperature
has related synonym: range_tmp

Axiom
annotated source: temperature preference
annotated property: definition
annotated target: A phenotype that describes characteristic growth with respect to environmental temperature.
definition source: OMP_0005002

Axiom
annotated source: temperature preference
annotated property: hasRelatedSynonym
annotated target: Physiology and metabolism.culture temp.temperature
definition source: bacdive.dsmz.de

Axiom
annotated source: temperature preference
annotated property: hasRelatedSynonym
annotated target: range_tmp
definition source: bacteria archaea traits

psychrophilic
type: Class
subclass of: temperature preference
definition: A temperature preference in which growth is favored at low temperatures, typically near or below ~15 °C.
has related synonym: psychrophilic

Axiom
annotated source: psychrophilic
annotated property: definition
annotated target: A temperature preference in which growth is favored at low temperatures, typically near or below ~15 °C.
definition source: MICRO_0001306

Axiom
annotated source: psychrophilic
annotated property: hasRelatedSynonym
annotated target: psychrophilic
definition source: bacdive.dsmz.de

Axiom
annotated source: psychrophilic
annotated property: hasRelatedSynonym
annotated target: psychrophilic
definition source: bacteria archaea traits

mesophilic
type: Class
subclass of: temperature preference
definition: A temperature preference in which growth is favored at intermediate temperatures, typically ~20–45 °C.
has related synonym: mesophilic

Axiom
annotated source: mesophilic
annotated property: definition
annotated target: A temperature preference in which growth is favored at intermediate temperatures, typically ~20–45 °C.
definition source: MICRO_0000111

Axiom
annotated source: mesophilic
annotated property: hasRelatedSynonym
annotated target: mesophilic
definition source: bacdive.dsmz.de

Axiom
annotated source: mesophilic
annotated property: hasRelatedSynonym
annotated target: mesophilic
definition source: bacteria archaea traits

thermophilic
type: Class
subclass of: temperature preference
definition: A temperature preference in which growth is favored at elevated temperatures, typically ≥45 °C.
has related synonym: thermophilic

Axiom
annotated source: thermophilic
annotated property: definition
annotated target: A temperature preference in which growth is favored at elevated temperatures, typically ≥45 °C.
definition source: MICRO_0000118
definition source: OMP_0005003
definition source: OMP_0005004

Axiom
annotated source: thermophilic
annotated property: hasRelatedSynonym
annotated target: thermophilic
definition source: bacdive.dsmz.de

Axiom
annotated source: thermophilic
annotated property: hasRelatedSynonym
annotated target: thermophilic
definition source: bacteria archaea traits

hyperthermophilic
type: Class
subclass of: temperature preference
definition: A temperature preference in which growth is favored at very high temperatures, typically ≥80 °C.
has related synonym: extreme thermophilic
has related synonym: hyperthermophilic

Axiom
annotated source: hyperthermophilic
annotated property: definition
annotated target: A temperature preference in which growth is favored at very high temperatures, typically ≥80 °C.
definition source: MICRO_0001538

Axiom
annotated source: hyperthermophilic
annotated property: hasRelatedSynonym
annotated target: extreme thermophilic
definition source: bacteria archaea traits

Axiom
annotated source: hyperthermophilic
annotated property: hasRelatedSynonym
annotated target: hyperthermophilic
definition source: bacdive.dsmz.de

psychrotolerant
type: Class
subclass of: temperature preference
definition: A temperature preference in which growth can occur at low temperatures without an obligate low-temperature preference.
has related synonym: psychrotolerant

Axiom
annotated source: psychrotolerant
annotated property: definition
annotated target: A temperature preference in which growth can occur at low temperatures without an obligate low-temperature preference.
definition source: MICRO_0001310
definition source: OMP_0005006
definition source: OMP_0005007

Axiom
annotated source: psychrotolerant
annotated property: hasRelatedSynonym
annotated target: psychrotolerant
definition source: bacteria archaea traits

thermotolerant
type: Class
subclass of: temperature preference
definition: A temperature preference in which growth can occur at elevated temperatures without an obligate high-temperature preference.
has related synonym: thermotolerant

Axiom
annotated source: thermotolerant
annotated property: definition
annotated target: A temperature preference in which growth can occur at elevated temperatures without an obligate high-temperature preference.
definition source: MICRO_0001286

Axiom
annotated source: thermotolerant
annotated property: hasRelatedSynonym
annotated target: thermotolerant
definition source: bacteria archaea traits

halophilic
type: Class
subclass of: halophily preference
definition: A halophily preference in which an organism requires high concentrations of salt for growth and survival.
has related synonym: halophilic

Axiom
annotated source: halophilic
annotated property: definition
annotated target: A halophily preference in which an organism requires high concentrations of salt for growth and survival.
definition source: GO_0170002
definition source: MICRO_0001314
definition source: MICRO_0001315
definition source: OMP_0005016

Axiom
annotated source: halophilic
annotated property: hasRelatedSynonym
annotated target: halophilic
definition source: bacdive.dsmz.de

Axiom
annotated source: halophilic
annotated property: hasRelatedSynonym
annotated target: halophilic
definition source: bacteria archaea traits

haloalkaliphilic
type: Class
subclass of: halophily preference
definition: A halophily preference in which an organism requires both high salt concentrations and alkaline pH for optimal growth.
has related synonym: haloalkaliphilic

Axiom
annotated source: haloalkaliphilic
annotated property: definition
annotated target: A halophily preference in which an organism requires both high salt concentrations and alkaline pH for optimal growth.
definition source: MICRO_0001314
definition source: MICRO_0001392
definition source: MICRO_0001554
definition source: OMP_0005011

Axiom
annotated source: haloalkaliphilic
annotated property: hasRelatedSynonym
annotated target: haloalkaliphilic
definition source: bacdive.dsmz.de

halotolerant
type: Class
subclass of: halophily preference
definition: A halophily preference in which an organism can tolerate high salt concentrations but does not require them for growth.
has related synonym: halotolerant

Axiom
annotated source: halotolerant
annotated property: definition
annotated target: A halophily preference in which an organism can tolerate high salt concentrations but does not require them for growth.
definition source: MICRO_0001316

Axiom
annotated source: halotolerant
annotated property: hasRelatedSynonym
annotated target: halotolerant
definition source: bacdive.dsmz.de

Axiom
annotated source: halotolerant
annotated property: hasRelatedSynonym
annotated target: halotolerant
definition source: bacteria archaea traits

moderately halophilic
type: Class
subclass of: halophily preference
definition: A halophily preference where growth and proliferation requires high levels of sodium chloride, usually above or about 0.2 M.
term editor: Anthea Guo
has related synonym: moderate-halophilic
has related synonym: moderately halophilic

Axiom
annotated source: moderately halophilic
annotated property: definition
annotated target: A halophily preference where growth and proliferation requires high levels of sodium chloride, usually above or about 0.2 M.
definition source: OMP_0005016

Axiom
annotated source: moderately halophilic
annotated property: hasRelatedSynonym
annotated target: moderate-halophilic
definition source: bacteria archaea traits

Axiom
annotated source: moderately halophilic
annotated property: hasRelatedSynonym
annotated target: moderately halophilic
definition source: bacdive.dsmz.de

non halophilic
type: Class
subclass of: halophily preference
definition: A halophily preference in which an organism does not require or prefer elevated salt concentrations for growth.
has related synonym: non-halophilic

Axiom
annotated source: non halophilic
annotated property: hasRelatedSynonym
annotated target: non-halophilic
definition source: bacdive.dsmz.de

Axiom
annotated source: non halophilic
annotated property: hasRelatedSynonym
annotated target: non-halophilic
definition source: bacteria archaea traits

slightly halophilic
type: Class
subclass of: halophily preference
definition: A halophily preference in which an organism requires low to moderate salt concentrations (0.3 to 0.8 M NaCl) for optimal growth.
has related synonym: slightly halophilic

Axiom
annotated source: slightly halophilic
annotated property: definition
annotated target: A halophily preference in which an organism requires low to moderate salt concentrations (0.3 to 0.8 M NaCl) for optimal growth.
definition source: OMP_0005016

Axiom
annotated source: slightly halophilic
annotated property: hasRelatedSynonym
annotated target: slightly halophilic
definition source: bacdive.dsmz.de

stenohaline
type: Class
subclass of: halophily preference
definition: A halophily preference in which an organism can only tolerate a narrow range of salinity concentrations and cannot survive significant changes in environmental salt levels.
term editor: Jed Dongjin Kim-Ozaeta
term editor: Luke Wang
has related synonym: stenohaline

Axiom
annotated source: stenohaline
annotated property: definition
annotated target: A halophily preference in which an organism can only tolerate a narrow range of salinity concentrations and cannot survive significant changes in environmental salt levels.
definition source: SaltTolerance

Axiom
annotated source: stenohaline
annotated property: hasRelatedSynonym
annotated target: stenohaline
definition source: bacteria archaea traits

euryhaline
type: Class
subclass of: halophily preference
definition: A halophily preference in which an organism can tolerate a wide range of salinity conditions.
has related synonym: euryhaline

Axiom
annotated source: euryhaline
annotated property: hasRelatedSynonym
annotated target: euryhaline
definition source: bacteria archaea traits

extremely halophilic
type: Class
subclass of: halophily preference
definition: A halophily preference in which an organism requires very high salt concentrations (typically 15-30% NaCl or higher) for optimal growth and cannot grow at salt concentrations below approximately 12%.
term editor: Jed Dongjin Kim-Ozaeta
has related synonym: extreme-halophilic
has related synonym: extremely halophilic

Axiom
annotated source: extremely halophilic
annotated property: definition
annotated target: A halophily preference in which an organism requires very high salt concentrations (typically 15-30% NaCl or higher) for optimal growth and cannot grow at salt concentrations below approximately 12%.
definition source: MICRO_0001314
definition source: OMP_0005016

Axiom
annotated source: extremely halophilic
annotated property: hasRelatedSynonym
annotated target: extreme-halophilic
definition source: bacteria archaea traits

Axiom
annotated source: extremely halophilic
annotated property: hasRelatedSynonym
annotated target: extremely halophilic
definition source: bacdive.dsmz.de

halophily preference
type: Class
subclass of: phenotype
definition: A phenotype that is relating to an organism's salt concentration requirements or tolerance for growth.
has related synonym: Physiology and metabolism.halophily.halophily level
has related synonym: range_salinity

Axiom
annotated source: halophily preference
annotated property: definition
annotated target: A phenotype that is relating to an organism's salt concentration requirements or tolerance for growth.
definition source: OMP_0005016
definition source: SaltTolerance

Axiom
annotated source: halophily preference
annotated property: hasRelatedSynonym
annotated target: Physiology and metabolism.halophily.halophily level
definition source: bacdive.dsmz.de

Axiom
annotated source: halophily preference
annotated property: hasRelatedSynonym
annotated target: range_salinity
definition source: bacteria archaea traits

biological process
type: Class
definition: A execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.

trophic type
type: Class
subclass of: phenotype
definition: A phenotype that is describing how an organism obtains carbon and energy for growth and metabolism.
term editor: Luke Wang
has related synonym: Physiology and metabolism.nutrition type.type
has related synonym: nutritional type
has related synonym: pathways

Axiom
annotated source: trophic type
annotated property: hasRelatedSynonym
annotated target: Physiology and metabolism.nutrition type.type
definition source: bacdive.dsmz.de

Axiom
annotated source: trophic type
annotated property: hasRelatedSynonym
annotated target: pathways
definition source: bacteria archaea traits

autotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism produces organic compounds from inorganic carbon sources (primarily carbon dioxide or bicarbonate) using energy from light (photoautotrophy) or from the oxidation of inorganic compounds (chemoautotrophy).
term editor: Jed Dongjin Kim-Ozaeta
has related synonym: TT_autotroph
has related synonym: autotroph
has related synonym: autotrophy

Axiom
annotated source: autotrophic
annotated property: definition
annotated target: A trophic type in which an organism produces organic compounds from inorganic carbon sources (primarily carbon dioxide or bicarbonate) using energy from light (photoautotrophy) or from the oxidation of inorganic compounds (chemoautotrophy).
definition source: ECOCORE_00000009
definition source: MICRO_0001456

Axiom
annotated source: autotrophic
annotated property: hasRelatedSynonym
annotated target: TT_autotroph
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: autotrophic
annotated property: hasRelatedSynonym
annotated target: autotroph
definition source: bacdive.dsmz.de

Axiom
annotated source: autotrophic
annotated property: hasRelatedSynonym
annotated target: autotrophy
definition source: bacteria archaea traits

carboxydotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism derives energy from the oxidation of carbon monoxide.

chemoautolithotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism uses chemical oxidation of inorganic compounds as the energy source and carbon dioxide as the primary carbon source for biosynthesis.
term editor: Luke Wang
has related synonym: chemoautolithotroph

Axiom
annotated source: chemoautolithotrophic
annotated property: definition
annotated target: A trophic type in which an organism uses chemical oxidation of inorganic compounds as the energy source and carbon dioxide as the primary carbon source for biosynthesis.
definition source: ECOCORE_00000123
definition source: ECOCORE_00000124
definition source: ECOCORE_00000129
definition source: OMP_0007110
definition source: OMP_0007111

Axiom
annotated source: chemoautolithotrophic
annotated property: hasRelatedSynonym
annotated target: chemoautolithotroph
definition source: bacdive.dsmz.de

chemoautotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism obtains energy from oxidation of inorganic compounds and carbon from carbon dioxide.
has related synonym: chemoautotroph

Axiom
annotated source: chemoautotrophic
annotated property: definition
annotated target: A trophic type in which an organism obtains energy from oxidation of inorganic compounds and carbon from carbon dioxide.
definition source: ECOCORE_00000123
definition source: ECOCORE_00000129
definition source: MICRO_0001480
definition source: OMP_0007110
definition source: OMP_0007111

Axiom
annotated source: chemoautotrophic
annotated property: hasRelatedSynonym
annotated target: chemoautotroph
definition source: bacdive.dsmz.de

chemoheterotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism obtains both energy and carbon from organic compounds.
has related synonym: aerobic_chemo_heterotrophy
has related synonym: chemoheterotroph

Axiom
annotated source: chemoheterotrophic
annotated property: definition
annotated target: A trophic type in which an organism obtains both energy and carbon from organic compounds.
definition source: ECOCORE_00000012
definition source: ECOCORE_00000127
definition source: ECOCORE_00000132
definition source: OMP_0007110
definition source: OMP_0007111

Axiom
annotated source: chemoheterotrophic
annotated property: hasRelatedSynonym
annotated target: aerobic_chemo_heterotrophy
definition source: bacteria archaea traits

Axiom
annotated source: chemoheterotrophic
annotated property: hasRelatedSynonym
annotated target: chemoheterotroph
definition source: bacdive.dsmz.de

chemolithoautotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism obtains energy from oxidation of inorganic compounds (lithotrophy) and carbon from carbon dioxide.
has related synonym: chemolithoautotroph

Axiom
annotated source: chemolithoautotrophic
annotated property: definition
annotated target: A trophic type in which an organism obtains energy from oxidation of inorganic compounds (lithotrophy) and carbon from carbon dioxide.
definition source: MICRO_0000511

Axiom
annotated source: chemolithoautotrophic
annotated property: hasRelatedSynonym
annotated target: chemolithoautotroph
definition source: bacdive.dsmz.de

chemolithoheterotrophic
type: Class
subclass of: trophic type
definition: A trophic type characterized by the use of inorganic chemical compounds as electron donors for energy generation while utilizing organic compounds as the primary carbon source.
term editor: Anthea Guo
has related synonym: chemolithoheterotroph

Axiom
annotated source: chemolithoheterotrophic
annotated property: definition
annotated target: A trophic type characterized by the use of inorganic chemical compounds as electron donors for energy generation while utilizing organic compounds as the primary carbon source.
definition source: MICRO_0000512
definition source: MICRO_0001478

Axiom
annotated source: chemolithoheterotrophic
annotated property: hasRelatedSynonym
annotated target: chemolithoheterotroph
definition source: bacdive.dsmz.de

chemolithotrophic
type: Class
subclass of: trophic type
definition: A trophic type characterized by the use of inorganic chemical compounds as electron donors and carbon dioxide as the primary carbon source for energy generation and biosynthesis.
term editor: Anthea Guo
has related synonym: chemolithotroph

Axiom
annotated source: chemolithotrophic
annotated property: definition
annotated target: A trophic type characterized by the use of inorganic chemical compounds as electron donors and carbon dioxide as the primary carbon source for energy generation and biosynthesis.
definition source: MICRO_0001499
definition source: OMP_0007110

Axiom
annotated source: chemolithotrophic
annotated property: hasRelatedSynonym
annotated target: chemolithotroph
definition source: bacdive.dsmz.de

chemoorganoheterotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism obtains both energy and carbon from organic compounds through oxidation.
has related synonym: chemoorganoheterotroph

Axiom
annotated source: chemoorganoheterotrophic
annotated property: definition
annotated target: A trophic type in which an organism obtains both energy and carbon from organic compounds through oxidation.
definition source: ECOCORE_00000127
definition source: MICRO_0000514
definition source: MICRO_0001479
definition source: MICRO_0001481
definition source: OMP_0007111

Axiom
annotated source: chemoorganoheterotrophic
annotated property: hasRelatedSynonym
annotated target: chemoorganoheterotroph
definition source: bacdive.dsmz.de

chemotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism obtains energy from chemical oxidation of either inorganic or organic compounds.
has related synonym: TT_chemotroph
has related synonym: chemotroph

Axiom
annotated source: chemotrophic
annotated property: definition
annotated target: A trophic type in which an organism obtains energy from chemical oxidation of either inorganic or organic compounds.
definition source: MICRO_0001458

Axiom
annotated source: chemotrophic
annotated property: hasRelatedSynonym
annotated target: TT_chemotroph
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: chemotrophic
annotated property: hasRelatedSynonym
annotated target: chemotroph
definition source: bacdive.dsmz.de

copiotrophic
type: Class
subclass of: nutrient adaptation
definition: A nutrient adaptation in which an organism thrives in environments with high nutrient concentrations, typically exhibiting rapid growth rates and utilizing diverse carbon sources.
term editor: Jed Dongjin Kim-Ozaeta
has related synonym: copiotroph

Axiom
annotated source: copiotrophic
annotated property: hasRelatedSynonym
annotated target: copiotroph
definition source: bacdive.dsmz.de

heterotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism obtains carbon from organic compounds rather than from carbon dioxide.
has related synonym: TT_heterotroph
has related synonym: aerobic_heterotrophy
has related synonym: heterotroph
has related synonym: heterotrophic

Axiom
annotated source: heterotrophic
annotated property: definition
annotated target: A trophic type in which an organism obtains carbon from organic compounds rather than from carbon dioxide.
definition source: MICRO_0001474

Axiom
annotated source: heterotrophic
annotated property: hasRelatedSynonym
annotated target: TT_heterotroph
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: heterotrophic
annotated property: hasRelatedSynonym
annotated target: aerobic_heterotrophy
definition source: bacteria archaea traits

Axiom
annotated source: heterotrophic
annotated property: hasRelatedSynonym
annotated target: heterotroph
definition source: bacdive.dsmz.de

Axiom
annotated source: heterotrophic
annotated property: hasRelatedSynonym
annotated target: heterotrophic
definition source: bacteria archaea traits

hydrogenotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism uses molecular hydrogen as an electron donor for energy generation and carbon dioxide as the primary carbon source.
term editor: Jed Dongjin Kim-Ozaeta
term editor: Luke Wang

lithoautotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism obtains energy from inorganic electron donors and carbon from carbon dioxide.
has related synonym: lithoautotroph

Axiom
annotated source: lithoautotrophic
annotated property: definition
annotated target: A trophic type in which an organism obtains energy from inorganic electron donors and carbon from carbon dioxide.
definition source: ECOCORE_00000009
definition source: ECOCORE_00000014
definition source: ECOCORE_00000122
definition source: MICRO_0001477
definition source: MICRO_0001483

Axiom
annotated source: lithoautotrophic
annotated property: hasRelatedSynonym
annotated target: lithoautotroph
definition source: bacdive.dsmz.de

lithoheterotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism obtains energy from the oxidation of inorganic compounds while using organic compounds as the primary carbon source for biosynthesis.
term editor: Jed Dongjin Kim-Ozaeta
has related synonym: lithoheterotroph

Axiom
annotated source: lithoheterotrophic
annotated property: definition
annotated target: A trophic type in which an organism obtains energy from the oxidation of inorganic compounds while using organic compounds as the primary carbon source for biosynthesis.
definition source: ECOCORE_00000014
definition source: ECOCORE_00000162
definition source: MICRO_0001459
definition source: MICRO_0001478
definition source: OMP_0007110

Axiom
annotated source: lithoheterotrophic
annotated property: hasRelatedSynonym
annotated target: lithoheterotroph
definition source: bacdive.dsmz.de

lithotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism uses inorganic compounds as electron donors for energy generation.
term editor: Luke Wang
has related synonym: TT_lithotroph
has related synonym: lithotroph

Axiom
annotated source: lithotrophic
annotated property: definition
annotated target: A trophic type in which an organism uses inorganic compounds as electron donors for energy generation.
definition source: MICRO_0001459

Axiom
annotated source: lithotrophic
annotated property: hasRelatedSynonym
annotated target: TT_lithotroph
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: lithotrophic
annotated property: hasRelatedSynonym
annotated target: lithotroph
definition source: bacdive.dsmz.de

methanotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism uses methane as the primary carbon and energy source through oxidation of methane to carbon dioxide.
term editor: Luke Wang
has related synonym: methanotroph

Axiom
annotated source: methanotrophic
annotated property: hasRelatedSynonym
annotated target: methanotroph
definition source: bacdive.dsmz.de

methylotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism obtains energy and carbon from reduced one-carbon compounds.
has related synonym: TT_methylotroph
has related synonym: methylotroph
has related synonym: methylotrophy

Axiom
annotated source: methylotrophic
annotated property: hasRelatedSynonym
annotated target: TT_methylotroph
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: methylotrophic
annotated property: hasRelatedSynonym
annotated target: methylotroph
definition source: bacdive.dsmz.de

Axiom
annotated source: methylotrophic
annotated property: hasRelatedSynonym
annotated target: methylotrophy
definition source: bacteria archaea traits

mixotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism can use both organic and inorganic carbon sources for growth.
has related synonym: mixotroph

Axiom
annotated source: mixotrophic
annotated property: definition
annotated target: A trophic type in which an organism can use both organic and inorganic carbon sources for growth.
definition source: MICRO_0001475

Axiom
annotated source: mixotrophic
annotated property: hasRelatedSynonym
annotated target: mixotroph
definition source: bacdive.dsmz.de

oligotrophic
type: Class
subclass of: nutrient adaptation
definition: A nutrient adaptation characterized by the ability to thrive in environments with very low nutrient concentrations, typically possessing efficient nutrient uptake and utilization systems.
term editor: Anthea Guo
term editor: Jed Dongjin Kim-Ozaeta
has related synonym: TT_oligotroph
has related synonym: oligotroph

Axiom
annotated source: oligotrophic
annotated property: definition
annotated target: A nutrient adaptation characterized by the ability to thrive in environments with very low nutrient concentrations, typically possessing efficient nutrient uptake and utilization systems.
definition source: ENVO_00002223
definition source: ENVO_01000774

Axiom
annotated source: oligotrophic
annotated property: hasRelatedSynonym
annotated target: TT_oligotroph
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: oligotrophic
annotated property: hasRelatedSynonym
annotated target: oligotroph
definition source: bacdive.dsmz.de

organotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism obtains energy from the oxidation of organic compounds.
has related synonym: TT_organotroph
has related synonym: organotroph

Axiom
annotated source: organotrophic
annotated property: definition
annotated target: A trophic type in which an organism obtains energy from the oxidation of organic compounds.
definition source: ECOCORE_00000162
definition source: OMP_0007111

Axiom
annotated source: organotrophic
annotated property: hasRelatedSynonym
annotated target: TT_organotroph
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: organotrophic
annotated property: hasRelatedSynonym
annotated target: organotroph
definition source: bacdive.dsmz.de

photoautotrophic
type: Class
subclass of: trophic type
definition: A trophic type characterized by the use of light as the energy source and carbon dioxide as the primary carbon source for biosynthesis.
term editor: Anthea Guo
has related synonym: anoxygenic_photoautotrophy
has related synonym: anoxygenic_photoautotrophy_hydrogen_oxidation
has related synonym: anoxygenic_photoautotrophy_iron_oxidation
has related synonym: anoxygenic_photoautotrophy_sulfur_oxidation
has related synonym: photoautotroph
has related synonym: photoautotrophy

Axiom
annotated source: photoautotrophic
annotated property: definition
annotated target: A trophic type characterized by the use of light as the energy source and carbon dioxide as the primary carbon source for biosynthesis.
definition source: ECOCORE_00000017
definition source: ECOCORE_00000121
definition source: MICRO_0001457
definition source: MICRO_0001483
definition source: OMP_0006008

Axiom
annotated source: photoautotrophic
annotated property: hasRelatedSynonym
annotated target: anoxygenic_photoautotrophy
definition source: bacteria archaea traits

Axiom
annotated source: photoautotrophic
annotated property: hasRelatedSynonym
annotated target: anoxygenic_photoautotrophy_hydrogen_oxidation
definition source: bacteria archaea traits

Axiom
annotated source: photoautotrophic
annotated property: hasRelatedSynonym
annotated target: anoxygenic_photoautotrophy_iron_oxidation
definition source: bacteria archaea traits

Axiom
annotated source: photoautotrophic
annotated property: hasRelatedSynonym
annotated target: anoxygenic_photoautotrophy_sulfur_oxidation
definition source: bacteria archaea traits

Axiom
annotated source: photoautotrophic
annotated property: hasRelatedSynonym
annotated target: photoautotroph
definition source: bacdive.dsmz.de

Axiom
annotated source: photoautotrophic
annotated property: hasRelatedSynonym
annotated target: photoautotrophy
definition source: bacteria archaea traits

photoheterotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism uses light as the energy source and organic compounds as the primary carbon source for biosynthesis.
term editor: Luke Wang
has related synonym: photoheterotroph
has related synonym: photoheterotrophy

Axiom
annotated source: photoheterotrophic
annotated property: definition
annotated target: A trophic type in which an organism uses light as the energy source and organic compounds as the primary carbon source for biosynthesis.
definition source: ECOCORE_00000131

Axiom
annotated source: photoheterotrophic
annotated property: hasRelatedSynonym
annotated target: photoheterotroph
definition source: bacdive.dsmz.de

Axiom
annotated source: photoheterotrophic
annotated property: hasRelatedSynonym
annotated target: photoheterotrophy
definition source: bacteria archaea traits

photolithotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism uses light as the energy source and inorganic compounds as electron donors, typically with carbon dioxide as the primary carbon source.
term editor: Jed Dongjin Kim-Ozaeta
term editor: Luke Wang
has related synonym: photolithotroph

Axiom
annotated source: photolithotrophic
annotated property: definition
annotated target: A trophic type in which an organism uses light as the energy source and inorganic compounds as electron donors, typically with carbon dioxide as the primary carbon source.
definition source: MICRO_0001482

Axiom
annotated source: photolithotrophic
annotated property: hasRelatedSynonym
annotated target: photolithotroph
definition source: bacdive.dsmz.de

photoorganoheterotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism obtains energy from light and carbon from organic compounds.
has related synonym: photoorganoheterotroph

Axiom
annotated source: photoorganoheterotrophic
annotated property: definition
annotated target: A trophic type in which an organism obtains energy from light and carbon from organic compounds.
definition source: MICRO_0000510

Axiom
annotated source: photoorganoheterotrophic
annotated property: hasRelatedSynonym
annotated target: photoorganoheterotroph
definition source: bacdive.dsmz.de

phototrophic
type: Class
subclass of: trophic type
definition: A trophic type characterized by the use of light as the primary energy source for metabolic processes, regardless of carbon source.
term editor: Anthea Guo
has related synonym: TT_phototroph
has related synonym: aerobic_anoxygenic_phototrophy
has related synonym: phototroph

Axiom
annotated source: phototrophic
annotated property: definition
annotated target: A trophic type characterized by the use of light as the primary energy source for metabolic processes, regardless of carbon source.
definition source: MICRO_0001457
definition source: OMP_0007064

Axiom
annotated source: phototrophic
annotated property: hasRelatedSynonym
annotated target: TT_phototroph
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: phototrophic
annotated property: hasRelatedSynonym
annotated target: aerobic_anoxygenic_phototrophy
definition source: bacteria archaea traits

Axiom
annotated source: phototrophic
annotated property: hasRelatedSynonym
annotated target: phototroph
definition source: bacdive.dsmz.de

chemoorganotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism obtains energy through chemical oxidation of organic compounds that also serve as the carbon source for biosynthesis.
term editor: Jed Dongjin Kim-Ozaeta
has related synonym: chemoorganotroph

Axiom
annotated source: chemoorganotrophic
annotated property: definition
annotated target: A trophic type in which an organism obtains energy through chemical oxidation of organic compounds that also serve as the carbon source for biosynthesis.
definition source: OMP_0007111

Axiom
annotated source: chemoorganotrophic
annotated property: hasRelatedSynonym
annotated target: chemoorganotroph
definition source: bacdive.dsmz.de

organoheterotrophic
type: Class
subclass of: trophic type
definition: A trophic type characterized by the use of organic compounds as both electron donors and primary carbon sources for energy generation and biosynthesis.
term editor: Anthea Guo
has related synonym: organoheterotroph

Axiom
annotated source: organoheterotrophic
annotated property: definition
annotated target: A trophic type characterized by the use of organic compounds as both electron donors and primary carbon sources for energy generation and biosynthesis.
definition source: ECOCORE_00000121
definition source: ECOCORE_00000125
definition source: ECOCORE_00000126
definition source: ECOCORE_00000127
definition source: ECOCORE_00000162

Axiom
annotated source: organoheterotrophic
annotated property: hasRelatedSynonym
annotated target: organoheterotroph
definition source: bacdive.dsmz.de

photolithoautotrophic
type: Class
subclass of: trophic type
definition: A trophic type in which an organism obtains energy from light and carbon from carbon dioxide using inorganic electron donors.
has related synonym: photolithoautotroph

Axiom
annotated source: photolithoautotrophic
annotated property: definition
annotated target: A trophic type in which an organism obtains energy from light and carbon from carbon dioxide using inorganic electron donors.
definition source: MICRO_0000500

Axiom
annotated source: photolithoautotrophic
annotated property: hasRelatedSynonym
annotated target: photolithoautotroph
definition source: bacdive.dsmz.de

cell shape
type: Class
subclass of: phenotype
definition: A phenotype that describes the characteristic three-dimensional morphological form of a microbial cell, determined by cell wall structure, cytoskeletal elements, and environmental factors.
term editor: Jed Dongjin Kim-Ozaeta
term editor: Luke Wang
has related synonym: Morphology.cell morphology.cell shape
has related synonym: cell_shape

Axiom
annotated source: cell shape
annotated property: definition
annotated target: A phenotype that describes the characteristic three-dimensional morphological form of a microbial cell, determined by cell wall structure, cytoskeletal elements, and environmental factors.
definition source: OMP_0000073

Axiom
annotated source: cell shape
annotated property: hasRelatedSynonym
annotated target: Morphology.cell morphology.cell shape
definition source: bacdive.dsmz.de

Axiom
annotated source: cell shape
annotated property: hasRelatedSynonym
annotated target: cell_shape
definition source: bacteria archaea traits

bacillus shaped
type: Class
subclass of: cell shape
definition: A cell shape characterized by an elongated, rod cylindrical morphology with relatively parallel sides and rounded ends.
term editor: Anthea Guo
has related synonym: bacillus

Axiom
annotated source: bacillus shaped
annotated property: definition
annotated target: A cell shape characterized by an elongated, rod cylindrical morphology with relatively parallel sides and rounded ends.
definition source: OMP_0000076

Axiom
annotated source: bacillus shaped
annotated property: hasRelatedSynonym
annotated target: bacillus
definition source: bacteria archaea traits

coccus shaped
type: Class
subclass of: cell shape
definition: A cell shape in which an organism has a spherical or nearly spherical morphology, with roughly equal dimensions in all directions.
term editor: Jed Dongjin Kim-Ozaeta
has related synonym: coccus
has related synonym: coccus-shaped

Axiom
annotated source: coccus shaped
annotated property: definition
annotated target: A cell shape in which an organism has a spherical or nearly spherical morphology, with roughly equal dimensions in all directions.
definition source: MICRO_0000402
definition source: OMP_0000075
definition source: OMP_0000123

Axiom
annotated source: coccus shaped
annotated property: hasRelatedSynonym
annotated target: coccus
definition source: bacteria archaea traits

Axiom
annotated source: coccus shaped
annotated property: hasRelatedSynonym
annotated target: coccus-shaped
definition source: bacdive.dsmz.de

crescent shaped
type: Class
subclass of: cell shape
term editor: Luke Wang
has related synonym: crescent-shaped

Axiom
annotated source: crescent shaped
annotated property: hasRelatedSynonym
annotated target: crescent-shaped
definition source: bacdive.dsmz.de

curved shaped
type: Class
subclass of: cell shape
term editor: Anthea Guo
has related synonym: S_curved_spiral
has related synonym: curved-shaped

Axiom
annotated source: curved shaped
annotated property: hasRelatedSynonym
annotated target: S_curved_spiral
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: curved shaped
annotated property: hasRelatedSynonym
annotated target: curved-shaped
definition source: bacdive.dsmz.de

diplococcus shaped
type: Class
subclass of: cell shape
definition: A cell shape in which spherical cells remain attached in pairs following cell division, forming characteristic doublets.
term editor: Luke Wang
has related synonym: diplococcus-shaped

Axiom
annotated source: diplococcus shaped
annotated property: definition
annotated target: A cell shape in which spherical cells remain attached in pairs following cell division, forming characteristic doublets.
definition source: OMP_0000117

Axiom
annotated source: diplococcus shaped
annotated property: hasRelatedSynonym
annotated target: diplococcus-shaped
definition source: bacdive.dsmz.de

dumbbell shaped
type: Class
subclass of: cell shape
has related synonym: S_star_dumbbell_pleomorphic
has related synonym: dumbbell-shaped

Axiom
annotated source: dumbbell shaped
annotated property: hasRelatedSynonym
annotated target: S_star_dumbbell_pleomorphic
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: dumbbell shaped
annotated property: hasRelatedSynonym
annotated target: dumbbell-shaped
definition source: bacdive.dsmz.de

ellipsoidal
type: Class
subclass of: cell shape
definition: A cell shape in which an organism has an oval or ellipse morphology, elongated along one axis with rounded ends, intermediate between spherical and rod-shaped.
term editor: Jed Dongjin Kim-Ozaeta
term editor: Luke Wang
has related synonym: ellipsoidal

Axiom
annotated source: ellipsoidal
annotated property: definition
annotated target: A cell shape in which an organism has an oval or ellipse morphology, elongated along one axis with rounded ends, intermediate between spherical and rod-shaped.
definition source: PATO_0000947

Axiom
annotated source: ellipsoidal
annotated property: hasRelatedSynonym
annotated target: ellipsoidal
definition source: bacdive.dsmz.de

filament shaped
type: Class
subclass of: cell shape
term editor: Luke Wang
has related synonym: S_filament
has related synonym: filament
has related synonym: filament-shaped

Axiom
annotated source: filament shaped
annotated property: hasRelatedSynonym
annotated target: S_filament
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: filament shaped
annotated property: hasRelatedSynonym
annotated target: filament
definition source: bacteria archaea traits

Axiom
annotated source: filament shaped
annotated property: hasRelatedSynonym
annotated target: filament-shaped
definition source: bacdive.dsmz.de

flask shaped
type: Class
subclass of: cell shape
has related synonym: flask
has related synonym: flask-shaped

Axiom
annotated source: flask shaped
annotated property: hasRelatedSynonym
annotated target: flask
definition source: bacteria archaea traits

Axiom
annotated source: flask shaped
annotated property: hasRelatedSynonym
annotated target: flask-shaped
definition source: bacdive.dsmz.de

helical shaped
type: Class
subclass of: cell shape
term editor: Anthea Guo
term editor: Jed Dongjin Kim-Ozaeta
has related synonym: helical-shaped

Axiom
annotated source: helical shaped
annotated property: hasRelatedSynonym
annotated target: helical-shaped
definition source: bacdive.dsmz.de

ovoid shaped
type: Class
subclass of: cell shape
definition: A cell shape in which an organism has an oval morphology, rounded at both ends with one end often slightly broader than the other.
term editor: Luke Wang
has related synonym: S_ovoid
has related synonym: ovoid-shaped

Axiom
annotated source: ovoid shaped
annotated property: definition
annotated target: A cell shape in which an organism has an oval morphology, rounded at both ends with one end often slightly broader than the other.
definition source: PATO_0001891

Axiom
annotated source: ovoid shaped
annotated property: hasRelatedSynonym
annotated target: S_ovoid
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: ovoid shaped
annotated property: hasRelatedSynonym
annotated target: ovoid-shaped
definition source: bacdive.dsmz.de

oval shaped
type: Class
subclass of: cell shape
definition: A cell shape characterized by an ellipsoidal morphology with rounded ends, resembling an elongated sphere.
term editor: Anthea Guo
has related synonym: oval-shaped

Axiom
annotated source: oval shaped
annotated property: definition
annotated target: A cell shape characterized by an ellipsoidal morphology with rounded ends, resembling an elongated sphere.
definition source: OMP_0007100

Axiom
annotated source: oval shaped
annotated property: hasRelatedSynonym
annotated target: oval-shaped
definition source: bacdive.dsmz.de

pleomorphic shaped
type: Class
subclass of: cell shape
definition: A cell shape characterized by variable and irregular morphology, where individual cells within a population exhibit multiple distinct shapes.
term editor: Anthea Guo
term editor: Jed Dongjin Kim-Ozaeta
has related synonym: S_star_dumbbell_pleomorphic
has related synonym: pleomorphic
has related synonym: pleomorphic-shaped

Axiom
annotated source: pleomorphic shaped
annotated property: definition
annotated target: A cell shape characterized by variable and irregular morphology, where individual cells within a population exhibit multiple distinct shapes.
definition source: OMP_0000132

Axiom
annotated source: pleomorphic shaped
annotated property: hasRelatedSynonym
annotated target: S_star_dumbbell_pleomorphic
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: pleomorphic shaped
annotated property: hasRelatedSynonym
annotated target: pleomorphic
definition source: bacteria archaea traits

Axiom
annotated source: pleomorphic shaped
annotated property: hasRelatedSynonym
annotated target: pleomorphic-shaped
definition source: bacdive.dsmz.de

ring shaped
type: Class
subclass of: cell shape
definition: A cell shape in which an organism forms circular or toroidal structures.
has related synonym: ring
has related synonym: ring-shaped

Axiom
annotated source: ring shaped
annotated property: definition
annotated target: A cell shape in which an organism forms circular or toroidal structures.
definition source: PATO_0002539

Axiom
annotated source: ring shaped
annotated property: hasRelatedSynonym
annotated target: ring
definition source: bacteria archaea traits

Axiom
annotated source: ring shaped
annotated property: hasRelatedSynonym
annotated target: ring-shaped
definition source: bacdive.dsmz.de

rod shaped
type: Class
subclass of: cell shape
definition: A cell shape in which an organism has an elongated, cylindrical morphology with relatively straight sides and rounded or flat ends.
term editor: Luke Wang
has related synonym: S_rod
has related synonym: rod-shaped

Axiom
annotated source: rod shaped
annotated property: definition
annotated target: A cell shape in which an organism has an elongated, cylindrical morphology with relatively straight sides and rounded or flat ends.
definition source: OMP_0000076

Axiom
annotated source: rod shaped
annotated property: hasRelatedSynonym
annotated target: S_rod
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: rod shaped
annotated property: hasRelatedSynonym
annotated target: rod-shaped
definition source: bacdive.dsmz.de

spore shaped
type: Class
subclass of: cell shape
term editor: Anthea Guo
has related synonym: spore-shaped

Axiom
annotated source: spore shaped
annotated property: hasRelatedSynonym
annotated target: spore-shaped
definition source: bacdive.dsmz.de

sphere shaped
type: Class
subclass of: cell shape
term editor: Anthea Guo
has related synonym: S_sphere
has related synonym: sphere-shaped

Axiom
annotated source: sphere shaped
annotated property: hasRelatedSynonym
annotated target: S_sphere
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: sphere shaped
annotated property: hasRelatedSynonym
annotated target: sphere-shaped
definition source: bacdive.dsmz.de

spiral shaped
type: Class
subclass of: cell shape
term editor: Luke Wang
has related synonym: S_curved_spiral
has related synonym: spiral
has related synonym: spiral-shaped

Axiom
annotated source: spiral shaped
annotated property: hasRelatedSynonym
annotated target: S_curved_spiral
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: spiral shaped
annotated property: hasRelatedSynonym
annotated target: spiral
definition source: bacteria archaea traits

Axiom
annotated source: spiral shaped
annotated property: hasRelatedSynonym
annotated target: spiral-shaped
definition source: bacdive.dsmz.de

star shaped
type: Class
subclass of: cell shape
definition: A cell shape in which an organism has multiple radiating projections from a central body.
has related synonym: S_star_dumbbell_pleomorphic
has related synonym: star
has related synonym: star-shaped

Axiom
annotated source: star shaped
annotated property: definition
annotated target: A cell shape in which an organism has multiple radiating projections from a central body.
definition source: OMP_0000130
definition source: PATO_0002065

Axiom
annotated source: star shaped
annotated property: hasRelatedSynonym
annotated target: S_star_dumbbell_pleomorphic
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: star shaped
annotated property: hasRelatedSynonym
annotated target: star
definition source: bacteria archaea traits

Axiom
annotated source: star shaped
annotated property: hasRelatedSynonym
annotated target: star-shaped
definition source: bacdive.dsmz.de

vibrio shaped
type: Class
subclass of: cell shape
definition: A cell shape in which an organism has a curved rod or comma morphology, characterized by a short curved cylindrical form with a single arc.
term editor: Jed Dongjin Kim-Ozaeta
has related synonym: vibrio
has related synonym: vibrio-shaped

Axiom
annotated source: vibrio shaped
annotated property: definition
annotated target: A cell shape in which an organism has a curved rod or comma morphology, characterized by a short curved cylindrical form with a single arc.
definition source: OMP_0000077
definition source: OMP_0000086

Axiom
annotated source: vibrio shaped
annotated property: hasRelatedSynonym
annotated target: vibrio
definition source: bacteria archaea traits

Axiom
annotated source: vibrio shaped
annotated property: hasRelatedSynonym
annotated target: vibrio-shaped
definition source: bacdive.dsmz.de

branched shaped
type: Class
subclass of: cell shape
has related synonym: branced

Axiom
annotated source: branched shaped
annotated property: hasRelatedSynonym
annotated target: branced
definition source: bacteria archaea traits

coccobacillus shaped
type: Class
subclass of: cell shape
has related synonym: coccobacillus

Axiom
annotated source: coccobacillus shaped
annotated property: hasRelatedSynonym
annotated target: coccobacillus
definition source: bacteria archaea traits

disc shaped
type: Class
subclass of: cell shape
definition: A cell shape in which an organism is flat and circular.
has related synonym: disc

Axiom
annotated source: disc shaped
annotated property: hasRelatedSynonym
annotated target: disc
definition source: bacteria archaea traits

fusiform shaped
type: Class
subclass of: cell shape
definition: A cell shape that is wide in the middle and tapers at both ends.
has related synonym: fusiform

Axiom
annotated source: fusiform shaped
annotated property: definition
annotated target: A cell shape that is wide in the middle and tapers at both ends.
definition source: PATO_0002400

Axiom
annotated source: fusiform shaped
annotated property: hasRelatedSynonym
annotated target: fusiform
definition source: bacteria archaea traits

irregular shaped
type: Class
subclass of: cell shape
has related synonym: irregular

Axiom
annotated source: irregular shaped
annotated property: hasRelatedSynonym
annotated target: irregular
definition source: bacteria archaea traits

spindle shaped
type: Class
subclass of: cell shape
term editor: Anthea Guo
has related synonym: spindle

Axiom
annotated source: spindle shaped
annotated property: hasRelatedSynonym
annotated target: spindle
definition source: bacteria archaea traits

spirochete shaped
type: Class
subclass of: cell shape
definition: A cell shape in which an organism has an elongated, tightly coiled helical morphology with periplasmic flagella (endoflagella) located between the cell wall and outer membrane.
term editor: Jed Dongjin Kim-Ozaeta
has related synonym: spirochete

Axiom
annotated source: spirochete shaped
annotated property: definition
annotated target: A cell shape in which an organism has an elongated, tightly coiled helical morphology with periplasmic flagella (endoflagella) located between the cell wall and outer membrane.
definition source: OMP_0000086
definition source: OMP_0000124
definition source: OMP_0000125

Axiom
annotated source: spirochete shaped
annotated property: hasRelatedSynonym
annotated target: spirochete
definition source: bacteria archaea traits

square shaped
type: Class
subclass of: cell shape
has related synonym: square

Axiom
annotated source: square shaped
annotated property: hasRelatedSynonym
annotated target: square
definition source: bacteria archaea traits

tailed shaped
type: Class
subclass of: cell shape
has related synonym: tailed

Axiom
annotated source: tailed shaped
annotated property: hasRelatedSynonym
annotated target: tailed
definition source: bacteria archaea traits

triangular shaped
type: Class
subclass of: cell shape
has related synonym: triangular

Axiom
annotated source: triangular shaped
annotated property: hasRelatedSynonym
annotated target: triangular
definition source: bacteria archaea traits

gram stain
type: Class
subclass of: phenotype
definition: A phenotype where microorganisms are grouped based on their ability to retain crystal violet dye in the Gram staining procedure.
term editor: Jed Dongjin Kim-Ozaeta
term editor: Luke Wang
has related synonym: Morphology.cell morphology.gram stain
has related synonym: gram_stain

Axiom
annotated source: gram stain
annotated property: definition
annotated target: A phenotype where microorganisms are grouped based on their ability to retain crystal violet dye in the Gram staining procedure.
definition source: OMP_0000191

Axiom
annotated source: gram stain
annotated property: hasRelatedSynonym
annotated target: Morphology.cell morphology.gram stain
definition source: bacdive.dsmz.de

Axiom
annotated source: gram stain
annotated property: hasRelatedSynonym
annotated target: gram_stain
definition source: bacteria archaea traits

gram positive
type: Class
subclass of: gram stain
definition: A gram stain in which an organism retains crystal violet dye and appears purple under microscopy due to a thick peptidoglycan cell wall.
has related synonym: G_positive
has related synonym: positive

Axiom
annotated source: gram positive
annotated property: definition
annotated target: A gram stain in which an organism retains crystal violet dye and appears purple under microscopy due to a thick peptidoglycan cell wall.
definition source: OMP_0000188
definition source: GramPositiveBacteria

Axiom
annotated source: gram positive
annotated property: hasRelatedSynonym
annotated target: G_positive
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: gram positive
annotated property: hasRelatedSynonym
annotated target: positive
definition source: bacdive.dsmz.de

Axiom
annotated source: gram positive
annotated property: hasRelatedSynonym
annotated target: positive
definition source: bacteria archaea traits

gram negative
type: Class
subclass of: gram stain
definition: A gram stain in which bacteria do not retain crystal violet dye and appear pink or red after staining, indicating a thin peptidoglycan layer and presence of an outer membrane.
term editor: Luke Wang
has related synonym: G_negative
has related synonym: negative

Axiom
annotated source: gram negative
annotated property: hasRelatedSynonym
annotated target: G_negative
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: gram negative
annotated property: hasRelatedSynonym
annotated target: negative
definition source: bacdive.dsmz.de

Axiom
annotated source: gram negative
annotated property: hasRelatedSynonym
annotated target: negative
definition source: bacteria archaea traits

gram variable
type: Class
subclass of: gram stain
definition: A gram stain in which bacteria from the same culture show both gram-positive and gram-negative staining characteristics, often due to age of culture or cell wall degradation.
term editor: Luke Wang
has related synonym: variable

Axiom
annotated source: gram variable
annotated property: definition
annotated target: A gram stain in which bacteria from the same culture show both gram-positive and gram-negative staining characteristics, often due to age of culture or cell wall degradation.
definition source: OMP_0000190

Axiom
annotated source: gram variable
annotated property: hasRelatedSynonym
annotated target: variable
definition source: bacdive.dsmz.de

motility
type: Class
subclass of: phenotype
definition: A phenotype in which an organism has the capability to move independently through its environment, typically by means of flagella, pili, gliding mechanisms, or other locomotory structures.
term editor: Jed Dongjin Kim-Ozaeta
has related synonym: Morphology.cell morphology.motility
has related synonym: motility

Axiom
annotated source: motility
annotated property: definition
annotated target: A phenotype in which an organism has the capability to move independently through its environment, typically by means of flagella, pili, gliding mechanisms, or other locomotory structures.
definition source: OMP_0000001

Axiom
annotated source: motility
annotated property: hasRelatedSynonym
annotated target: Morphology.cell morphology.motility
definition source: bacdive.dsmz.de

Axiom
annotated source: motility
annotated property: hasRelatedSynonym
annotated target: motility
definition source: bacteria archaea traits

motile
type: Class
subclass of: motility
definition: A motility in which an organism has the ability to move independently using metabolic energy.
has related synonym: motile
has related synonym: yes

Axiom
annotated source: motile
annotated property: definition
annotated target: A motility in which an organism has the ability to move independently using metabolic energy.
definition source: CL_0000219
definition source: OMP_0000005

Axiom
annotated source: motile
annotated property: hasRelatedSynonym
annotated target: motile
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: motile
annotated property: hasRelatedSynonym
annotated target: yes
definition source: bacdive.dsmz.de

Axiom
annotated source: motile
annotated property: hasRelatedSynonym
annotated target: yes
definition source: bacteria archaea traits

non motile
type: Class
subclass of: motility
definition: A motility in which an organism lacks the ability to move independently under its own power.
has related synonym: no
has related synonym: non-motile

Axiom
annotated source: non motile
annotated property: definition
annotated target: A motility in which an organism lacks the ability to move independently under its own power.
definition source: OMP_0000133
definition source: OMP_0007488
definition source: OMP_0007489
definition source: OMP_0007490
definition source: UPHENO_0034076

Axiom
annotated source: non motile
annotated property: hasRelatedSynonym
annotated target: no
definition source: bacdive.dsmz.de

Axiom
annotated source: non motile
annotated property: hasRelatedSynonym
annotated target: no
definition source: bacteria archaea traits

Axiom
annotated source: non motile
annotated property: hasRelatedSynonym
annotated target: non-motile
definition source: BactoTraits databaseV2 Jun2022.csv

flagellated
type: Class
subclass of: motile
definition: A motile in which an organism possesses flagella for locomotion.
has related synonym: flagella

Axiom
annotated source: flagellated
annotated property: definition
annotated target: A motile in which an organism possesses flagella for locomotion.
definition source: CL_0011016
definition source: GO_0030317
definition source: MICRO_0000272
definition source: OMP_0000029

Axiom
annotated source: flagellated
annotated property: hasRelatedSynonym
annotated target: flagella
definition source: bacteria archaea traits

axially filamented
type: Class
subclass of: motile
definition: A motility where the flagellum filament of an organism is located in the periplasm and does not extend past the cell envelope.
term editor: Luke Wang
has related synonym: axial filament

Axiom
annotated source: axially filamented
annotated property: definition
annotated target: A motility where the flagellum filament of an organism is located in the periplasm and does not extend past the cell envelope.
definition source: GO_0055040
definition source: OMP_0000023

Axiom
annotated source: axially filamented
annotated property: hasRelatedSynonym
annotated target: axial filament
definition source: bacteria archaea traits

gliding
type: Class
subclass of: motile
definition: A motile in which an organism moves smoothly along solid surfaces without flagella or pili.
has related synonym: gliding

Axiom
annotated source: gliding
annotated property: definition
annotated target: A motile in which an organism moves smoothly along solid surfaces without flagella or pili.
definition source: GO_0071976
definition source: MICRO_0000437
definition source: OMP_0000112

Axiom
annotated source: gliding
annotated property: hasRelatedSynonym
annotated target: gliding
definition source: bacteria archaea traits

facultative psychrophilic
type: Class
subclass of: temperature preference
definition: A temperature preference characterized by the ability to grow at low temperatures (typically below 20Â°C) while maintaining optimal growth at moderate temperatures.
term editor: Anthea Guo
has related synonym: facultative psychrophile
has related synonym: facultative psychrophilic

Axiom
annotated source: facultative psychrophilic
annotated property: definition
annotated target: A temperature preference characterized by the ability to grow at low temperatures (typically below 20Â°C) while maintaining optimal growth at moderate temperatures.
definition source: MICRO_0001306
definition source: MICRO_0001417
definition source: OMP_0005007

Axiom
annotated source: facultative psychrophilic
annotated property: hasRelatedSynonym
annotated target: facultative psychrophilic
definition source: bacteria archaea traits

extreme hyperthermophilic
type: Class
subclass of: temperature preference
definition: A temperature preference that grows optimally at temperatures above 90°C.
has related synonym: extreme hyperthermophile
has related synonym: extremely hyperthermophilic

Axiom
annotated source: extreme hyperthermophilic
annotated property: definition
annotated target: A temperature preference that grows optimally at temperatures above 90°C.
definition source: ENVO_00002027
definition source: MICRO_0001294
definition source: MICRO_0001538
definition source: OMP_0005003

nutrient adaptation
type: Class
subclass of: trophic type
definition: A trophic type that involves an organism's physiological and metabolic adaptations to specific nutrient availability.
term editor: Luke Wang

Axiom
annotated source: nutrient adaptation
annotated property: definition
annotated target: A trophic type that involves an organism's physiological and metabolic adaptations to specific nutrient availability.
definition source: PHIPO_0001216

respiration
type: Class
subclass of: metabolism
definition: A metabolism that is characterized by the method of performing cellular respiration, distinguished primarily by the specific terminal electron acceptor utilized for producing cellular energy.
term editor: Anthea Guo
has related synonym: pathways

Axiom
annotated source: respiration
annotated property: definition
annotated target: A metabolism that is characterized by the method of performing cellular respiration, distinguished primarily by the specific terminal electron acceptor utilized for producing cellular energy.
definition source: GO_0009060
definition source: GO_0045333

Axiom
annotated source: respiration
annotated property: hasRelatedSynonym
annotated target: pathways
definition source: bacteria archaea traits

Aerobic respiration
type: Class
subclass of: respiration
definition: A respiration in which molecular oxygen serves as the terminal electron acceptor in the electron transport chain, generating ATP through oxidative phosphorylation with water as the final product.
term editor: Jed Dongjin Kim-Ozaeta
has related synonym: Oxic respiration
has related synonym: Oxygen respiration

Axiom
annotated source: Aerobic respiration
annotated property: definition
annotated target: A respiration in which molecular oxygen serves as the terminal electron acceptor in the electron transport chain, generating ATP through oxidative phosphorylation with water as the final product.
definition source: GO_0009060

Anaerobic respiration
type: Class
subclass of: respiration
definition: A respiration in which an organism uses electron acceptors other than oxygen for energy production.
has related synonym: Anoxic respiration
has related synonym: Dissimilatory respiration (non-O₂)

Axiom
annotated source: Anaerobic respiration
annotated property: definition
annotated target: A respiration in which an organism uses electron acceptors other than oxygen for energy production.
definition source: GO_0009061

Oxidative phosphorylation
type: Class
subclass of: metabolism
definition: A metabolism that generates ATP through the transfer of electrons from electron donors to electron acceptors via redox reactions, coupled to the pumping of protons across a membrane to create an electrochemical gradient.
term editor: Anthea Guo

Axiom
annotated source: Oxidative phosphorylation
annotated property: definition
annotated target: A metabolism that generates ATP through the transfer of electrons from electron donors to electron acceptors via redox reactions, coupled to the pumping of protons across a membrane to create an electrochemical gradient.
definition source: GO_0006119

Substrate-level phosphorylation
type: Class
subclass of: metabolism
definition: A metabolism in which ATP is formed directly by transfer of a phosphoryl group from a substrate to ADP.

Electron transfer
type: Class
subclass of: metabolism
definition: A metabolism in which electrons are transferred from an electron donor to an electron acceptor.
term editor: Jed Dongjin Kim-Ozaeta

Axiom
annotated source: Electron transfer
annotated property: definition
annotated target: A metabolism in which electrons are transferred from an electron donor to an electron acceptor.
definition source: GO_0009055

Disproportionation
type: Class
subclass of: metabolism
definition: A metabolism in which a single substrate simultaneously undergoes both oxidation and reduction reactions, with part of the substrate serving as the electron donor and another part serving as the electron acceptor.
term editor: Jed Dongjin Kim-Ozaeta

Methanogenesis
type: Class
subclass of: metabolism
definition: A metabolism in which methane is produced as the primary end product through the reduction of carbon-containing compounds, formate, methanol, or acetate, exclusively performed by methanogenic archaea under strictly anaerobic conditions.
term editor: Jed Dongjin Kim-Ozaeta
term editor: Luke Wang
has related synonym: Biological methanation
has related synonym: Biomethanation
has related synonym: Carbonate respiration
has related synonym: methanogenesis

Axiom
annotated source: Methanogenesis
annotated property: definition
annotated target: A metabolism in which methane is produced as the primary end product through the reduction of carbon-containing compounds, formate, methanol, or acetate, exclusively performed by methanogenic archaea under strictly anaerobic conditions.
definition source: GO_0015948

Axiom
annotated source: Methanogenesis
annotated property: hasRelatedSynonym
annotated target: methanogenesis
definition source: bacteria archaea traits

Acetogenesis
type: Class
subclass of: metabolism
definition: A metabolism that produces acetate as the primary end product through the reduction of carbon dioxide or other carbon compounds using the Wood-Ljungdahl pathway, typically performed by acetogenic bacteria under anaerobic conditions.
term editor: Anthea Guo
term editor: Jed Dongjin Kim-Ozaeta
has related synonym: Acetate fermentation
has related synonym: acetogenesis

Axiom
annotated source: Acetogenesis
annotated property: hasRelatedSynonym
annotated target: acetogenesis
definition source: bacteria archaea traits

Homoacetogenesis
type: Class
subclass of: metabolism
definition: A metabolism in which acetate is produced as the sole reduced end product from reduction of CO2 via the acetyl-CoA pathway.
has related synonym: Reductive acetyl-CoA pathway
has related synonym: Wood-Ljungdahl pathway

sporulation
type: Class
subclass of: phenotype
definition: A phenotype that is relating to an organism's ability to form dormant, stress-resistant endospores.
has related synonym: General.keywords
has related synonym: Physiology and metabolism.spore formation.spore formation
has related synonym: sporulation

Axiom
annotated source: sporulation
annotated property: definition
annotated target: A phenotype that is relating to an organism's ability to form dormant, stress-resistant endospores.
definition source: GO_0043934

Axiom
annotated source: sporulation
annotated property: hasRelatedSynonym
annotated target: General.keywords
definition source: bacdive.dsmz.de

Axiom
annotated source: sporulation
annotated property: hasRelatedSynonym
annotated target: Physiology and metabolism.spore formation.spore formation
definition source: bacdive.dsmz.de

Axiom
annotated source: sporulation
annotated property: hasRelatedSynonym
annotated target: sporulation
definition source: bacteria archaea traits

spore forming
type: Class
subclass of: sporulation
definition: A sporulation in which an organism has the ability to produce endospores.
has related synonym: spore
has related synonym: yes

Axiom
annotated source: spore forming
annotated property: definition
annotated target: A sporulation in which an organism has the ability to produce endospores.
definition source: GO_0034301
definition source: OMP_0000017
definition source: SporeFormation

Axiom
annotated source: spore forming
annotated property: hasRelatedSynonym
annotated target: spore
definition source: BactoTraits databaseV2 Jun2022.csv

Axiom
annotated source: spore forming
annotated property: hasRelatedSynonym
annotated target: yes
definition source: bacdive.dsmz.de

Axiom
annotated source: spore forming
annotated property: hasRelatedSynonym
annotated target: yes
definition source: bacteria archaea traits

non-spore forming
type: Class
subclass of: sporulation
definition: A sporulation in which an organism lacks the ability to produce endospores.
has related synonym: no
has related synonym: no_spore

Axiom
annotated source: non-spore forming
annotated property: definition
annotated target: A sporulation in which an organism lacks the ability to produce endospores.
definition source: OMP_0000018
definition source: OMP_0007232
definition source: OMP_0007236
definition source: OMP_0007434
definition source: UPHENO_0083394

Axiom
annotated source: non-spore forming
annotated property: hasRelatedSynonym
annotated target: no
definition source: bacdive.dsmz.de

Axiom
annotated source: non-spore forming
annotated property: hasRelatedSynonym
annotated target: no
definition source: bacteria archaea traits

Axiom
annotated source: non-spore forming
annotated property: hasRelatedSynonym
annotated target: no_spore
definition source: BactoTraits databaseV2 Jun2022.csv

cell length
type: Class
subclass of: phenotype
definition: A phenotype that inheres in a cell by virtue of its longer dimension when viewed on a plane.

Axiom
annotated source: cell length
annotated property: definition
annotated target: A phenotype that inheres in a cell by virtue of its longer dimension when viewed on a plane.
definition source: OBA_2040145

cell width
type: Class
subclass of: phenotype
definition: A phenotype that inheres in a cell by virtue of its shorter dimension when viewed on a plane.

Axiom
annotated source: cell width
annotated property: definition
annotated target: A phenotype that inheres in a cell by virtue of its shorter dimension when viewed on a plane.
definition source: OBA_2040146

cell length very small
type: Class
equivalent class: Class
  intersection of: cell length
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        max inclusive: 1.3
subclass of: cell length
UCUM code: um
has related synonym: L_<=1.3
range max: 1.3

Axiom
annotated source: cell length very small
annotated property: hasRelatedSynonym
annotated target: L_<=1.3
definition source: BactoTraits databaseV2 Jun2022.csv

cell length small
type: Class
equivalent class: Class
  intersection of: cell length
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 1.3
      with restrictions:
        max inclusive: 2
subclass of: cell length
UCUM code: um
has related synonym: L_1.3_2
range max: 2
range min: 1.3

Axiom
annotated source: cell length small
annotated property: hasRelatedSynonym
annotated target: L_1.3_2
definition source: BactoTraits databaseV2 Jun2022.csv

cell length medium
type: Class
equivalent class: Class
  intersection of: cell length
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 2
      with restrictions:
        max inclusive: 3
subclass of: cell length
UCUM code: um
has related synonym: L_2_3
range max: 3
range min: 2

Axiom
annotated source: cell length medium
annotated property: hasRelatedSynonym
annotated target: L_2_3
definition source: BactoTraits databaseV2 Jun2022.csv

cell length large
type: Class
equivalent class: Class
  intersection of: cell length
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 3
subclass of: cell length
UCUM code: um
has related synonym: L_>3
range min: 3

Axiom
annotated source: cell length large
annotated property: hasRelatedSynonym
annotated target: L_>3
definition source: BactoTraits databaseV2 Jun2022.csv

cell width very small
type: Class
equivalent class: Class
  intersection of: cell width
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        max inclusive: 0.5
subclass of: cell width
UCUM code: um
has related synonym: W_<=0.5
range max: 0.5

Axiom
annotated source: cell width very small
annotated property: hasRelatedSynonym
annotated target: W_<=0.5
definition source: BactoTraits databaseV2 Jun2022.csv

cell width small
type: Class
equivalent class: Class
  intersection of: cell width
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 0.5
      with restrictions:
        max inclusive: 0.65
subclass of: cell width
UCUM code: um
has related synonym: W_0.5_0.65
range max: 0.65
range min: 0.5

Axiom
annotated source: cell width small
annotated property: hasRelatedSynonym
annotated target: W_0.5_0.65
definition source: BactoTraits databaseV2 Jun2022.csv

cell width medium
type: Class
equivalent class: Class
  intersection of: cell width
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 0.65
      with restrictions:
        max inclusive: 0.9
subclass of: cell width
UCUM code: um
has related synonym: W_0.65_0.9
range max: 0.9
range min: 0.65

Axiom
annotated source: cell width medium
annotated property: hasRelatedSynonym
annotated target: W_0.65_0.9
definition source: BactoTraits databaseV2 Jun2022.csv

cell width large
type: Class
equivalent class: Class
  intersection of: cell width
  intersection of: Restriction
    on property: has value
    some values from: Datatype
      on datatype: decimal
      with restrictions:
        min inclusive: 0.9
subclass of: cell width
UCUM code: um
has related synonym: W_>0.9
range min: 0.9

Axiom
annotated source: cell width large
annotated property: hasRelatedSynonym
annotated target: W_>0.9
definition source: BactoTraits databaseV2 Jun2022.csv

observation
type: Class

optimum temperature observation
type: Class
subclass of: observation
definition: An observation that identifies the temperature at which a microorganism exhibits maximum growth rate or metabolic activity.
term editor: Luke Wang

Axiom
annotated source: optimum temperature observation
annotated property: definition
annotated target: An observation that identifies the temperature at which a microorganism exhibits maximum growth rate or metabolic activity.
definition source: PATO_0000146

growth temperature observation
type: Class
subclass of: observation

temperature range observation
type: Class
subclass of: observation

temperature delta observation
type: Class
subclass of: observation

growth NaCl observation
type: Class
subclass of: observation

NaCl delta observation
type: Class
subclass of: observation

NaCl range observation
type: Class
subclass of: observation

optimum NaCl observation
type: Class
subclass of: observation

growth pH observation
type: Class
subclass of: observation

optimum pH observation
type: Class
subclass of: observation

pH delta observation
type: Class
subclass of: observation

pH range observation
type: Class
subclass of: observation

optimum oxygen observation
type: Class
subclass of: observation

growth oxygen observation
type: Class
subclass of: observation

oxygen range observation
type: Class
subclass of: observation

oxygen delta observation
type: Class
subclass of: observation

oxygen observation
type: Class
subclass of: observation

temperature observation
type: Class
subclass of: observation

NaCl observation
type: Class
subclass of: observation

pH observation
type: Class
subclass of: observation

biosafety level
type: Class
subclass of: quality
definition: A quality that categorizes biological agents according to their hazard level and required containment measures.
has related synonym: Safety information.risk assessment.biosafety level

Axiom
annotated source: biosafety level
annotated property: hasRelatedSynonym
annotated target: Safety information.risk assessment.biosafety level
definition source: bacdive.dsmz.de

biosafety level 1
type: Class
subclass of: biosafety level
definition: A biosafety level that pose minimal potential hazard to laboratory workers and the environment, requiring only standard microbiological practices.
term editor: Anthea Guo
has related synonym: 1

Axiom
annotated source: biosafety level 1
annotated property: hasRelatedSynonym
annotated target: 1
definition source: bacdive.dsmz.de

biosafety level 2
type: Class
subclass of: biosafety level
definition: A biosafety level that pose moderate risk and are associated with human diseases present in the community.
has related synonym: 2

Axiom
annotated source: biosafety level 2
annotated property: hasRelatedSynonym
annotated target: 2
definition source: bacdive.dsmz.de

biosafety level 3
type: Class
subclass of: biosafety level
definition: A biosafety level that can cause serious or potentially lethal disease through inhalation or other routes, requiring specialized containment facilities with controlled access, directional airflow, and strict safety protocols.
term editor: Jed Dongjin Kim-Ozaeta
has related synonym: 3
has related synonym: 3**

Axiom
annotated source: biosafety level 3
annotated property: hasRelatedSynonym
annotated target: 3
definition source: bacdive.dsmz.de

Axiom
annotated source: biosafety level 3
annotated property: hasRelatedSynonym
annotated target: 3**
definition source: bacdive.dsmz.de

biosafety level 4
type: Class
subclass of: biosafety level
definition: A biosafety level that pose extreme risk of life-threatening disease through aerosol transmission with no available treatment.
has related synonym: 4

Axiom
annotated source: biosafety level 4
annotated property: hasRelatedSynonym
annotated target: 4
definition source: bacdive.dsmz.de

biosafety level 5
type: Class
subclass of: biosafety level
definition: A biosafety level that is proposed as a classification beyond BSL-4 for hypothetical biological agents requiring enhanced containment.
has related synonym: 5

Axiom
annotated source: biosafety level 5
annotated property: hasRelatedSynonym
annotated target: 5
definition source: bacdive.dsmz.de

Cable bacteria metabolism
type: Class
subclass of: metabolism
definition: A metabolism in which electrons are transferred over centimeter-scale distances through multicellular filaments.

Fermentation
type: Class
subclass of: respiration
definition: A respiration that generates energy through the oxidation of organic compounds without using an external electron acceptor, using organic molecules as both electron donors and final electron acceptors.
term editor: Luke Wang
has related synonym: fermentation

Axiom
annotated source: Fermentation
annotated property: definition
annotated target: A respiration that generates energy through the oxidation of organic compounds without using an external electron acceptor, using organic molecules as both electron donors and final electron acceptors.
definition source: GO_0006113

Axiom
annotated source: Fermentation
annotated property: hasRelatedSynonym
annotated target: fermentation
definition source: bacteria archaea traits

Syntrophy
type: Class
subclass of: metabolism
definition: A metabolism in which the metabolism of one species is thermodynamically dependent on the removal of its products by another species.
term editor: Jed Dongjin Kim-Ozaeta

pH growth preference
type: Class
subclass of: phenotype
definition: A phenotype that describes how the rate and extent of population growth are affected by environmental pH.

Axiom
annotated source: pH growth preference
annotated property: definition
annotated target: A phenotype that describes how the rate and extent of population growth are affected by environmental pH.
definition source: OMP_0005008

neutrophilic
type: Class
subclass of: pH growth preference
definition: A pH growth preference characterized by optimal growth at near-neutral pH values, typically between pH 6.5 and 7.5.
term editor: Anthea Guo
has exact synonym: neutralophile
has exact synonym: neutralophilic
has exact synonym: neutrophile

Axiom
annotated source: neutrophilic
annotated property: definition
annotated target: A pH growth preference characterized by optimal growth at near-neutral pH values, typically between pH 6.5 and 7.5.
definition source: OMP_0005010
definition source: PATO_0070046

alkaphilic
type: Class
subclass of: pH growth preference
definition: A pH growth preference in which an organism grows optimally at pH values above 9.
has exact synonym: alkaliphile
has exact synonym: alkaliphilic
has exact synonym: alkalophile
has exact synonym: alkalophilic

Axiom
annotated source: alkaphilic
annotated property: definition
annotated target: A pH growth preference in which an organism grows optimally at pH values above 9.
definition source: ENVO_00002022
definition source: MICRO_0001549
definition source: OMP_0005009
definition source: OMP_0005010
definition source: OMP_0005011

acidophilic
type: Class
subclass of: pH growth preference
definition: A pH growth preference in which an organism grows optimally at pH values below 5.
has exact synonym: acidophil
has exact synonym: acidophile

Axiom
annotated source: acidophilic
annotated property: definition
annotated target: A pH growth preference in which an organism grows optimally at pH values below 5.
definition source: MICRO_0001549
definition source: OMP_0005009
definition source: OMP_0005010
definition source: OMP_0005011
definition source: OMP_0007945

obligately alkaphilic
type: Class
subclass of: pH growth preference
definition: A pH growth preference in which an organism requires alkaline conditions (typically pH above 8.5) for growth and cannot grow at neutral or acidic pH.
term editor: Luke Wang
has exact synonym: obligate alkaliphile
has exact synonym: obligate alkaphilic
has exact synonym: obligately alkaliphilic

Axiom
annotated source: obligately alkaphilic
annotated property: definition
annotated target: A pH growth preference in which an organism requires alkaline conditions (typically pH above 8.5) for growth and cannot grow at neutral or acidic pH.
definition source: ENVO_00002022
definition source: MICRO_0001565
definition source: OMP_0005011
definition source: OMP_0007771
definition source: OMP_0007947

facultatively alkaphilic
type: Class
subclass of: pH growth preference
definition: A pH growth preference in which an organism can grow at alkaline pH but does not require it.
has exact synonym: facultative alkaliphile
has exact synonym: facultative alkaphilic
has exact synonym: facultatively alkaliphilic

Axiom
annotated source: facultatively alkaphilic
annotated property: definition
annotated target: A pH growth preference in which an organism can grow at alkaline pH but does not require it.
definition source: MICRO_0001558
definition source: OMP_0005009
definition source: OMP_0005011
definition source: OMP_0007771
definition source: OMP_0007947

obligately acidophilic
type: Class
subclass of: pH growth preference
definition: A pH growth preference characterized by the requirement for acidic environments (pH below 5.5) for growth, with inability to grow at neutral or alkaline pH values.
term editor: Anthea Guo
term editor: Jed Dongjin Kim-Ozaeta
has exact synonym: obligate acidophile
has exact synonym: obligately acidophilic

Axiom
annotated source: obligately acidophilic
annotated property: definition
annotated target: A pH growth preference characterized by the requirement for acidic environments (pH below 5.5) for growth, with inability to grow at neutral or alkaline pH values.
definition source: MICRO_0001566

facultatively acidophilic
type: Class
subclass of: pH growth preference
definition: A pH growth preference characterized by optimal growth in acidic environments (pH below 5.5) with the capacity to also grow at near-neutral pH values.
term editor: Anthea Guo
term editor: Jed Dongjin Kim-Ozaeta
has exact synonym: facultative acidophile
has exact synonym: facultatively acidophilic

Axiom
annotated source: facultatively acidophilic
annotated property: definition
annotated target: A pH growth preference characterized by optimal growth in acidic environments (pH below 5.5) with the capacity to also grow at near-neutral pH values.
definition source: MICRO_0001557
definition source: OMP_0005009
definition source: OMP_0005010
definition source: OMP_0007009
definition source: OMP_0007945

acidotolerant
type: Class
subclass of: pH growth preference
definition: A pH growth preference characterized by the ability to tolerate acidic environments (typically pH below 5.5) while maintaining optimal growth near neutral pH.
term editor: Anthea Guo
term editor: Jed Dongjin Kim-Ozaeta
has exact synonym: aciduric

Axiom
annotated source: acidotolerant
annotated property: definition
annotated target: A pH growth preference characterized by the ability to tolerate acidic environments (typically pH below 5.5) while maintaining optimal growth near neutral pH.
definition source: MICRO_0001555

alkalotolerant
type: Class
subclass of: pH growth preference
definition: A pH growth preference in which an organism can tolerate alkaline pH but grows optimally at neutral pH.
has exact synonym: alkalitolerant

Axiom
annotated source: alkalotolerant
annotated property: definition
annotated target: A pH growth preference in which an organism can tolerate alkaline pH but grows optimally at neutral pH.
definition source: OMP_0005009
definition source: OMP_0005011
definition source: OMP_0007011
definition source: OMP_0007771
definition source: OMP_0007947

pigmentation
type: Class
subclass of: phenotype
definition: A phenotype characterized by the color of pigments produced by a microorganism.

Axiom
annotated source: pigmentation
annotated property: definition
annotated target: A phenotype characterized by the color of pigments produced by a microorganism.
definition source: GO_0043473

black pigmented
type: Class
subclass of: pigmentation
has related synonym: Pigment_black

Axiom
annotated source: black pigmented
annotated property: hasRelatedSynonym
annotated target: Pigment_black
definition source: BactoTraits databaseV2 Jun2022.csv

brown pigmented
type: Class
subclass of: pigmentation
has related synonym: Pigment_brown

Axiom
annotated source: brown pigmented
annotated property: hasRelatedSynonym
annotated target: Pigment_brown
definition source: BactoTraits databaseV2 Jun2022.csv

cream pigmented
type: Class
subclass of: pigmentation
has related synonym: Pigment_cream

Axiom
annotated source: cream pigmented
annotated property: hasRelatedSynonym
annotated target: Pigment_cream
definition source: BactoTraits databaseV2 Jun2022.csv

green pigmented
type: Class
subclass of: pigmentation
has related synonym: Pigment_green

Axiom
annotated source: green pigmented
annotated property: hasRelatedSynonym
annotated target: Pigment_green
definition source: BactoTraits databaseV2 Jun2022.csv

orange pigmented
type: Class
subclass of: pigmentation
has related synonym: Pigment_orange

Axiom
annotated source: orange pigmented
annotated property: hasRelatedSynonym
annotated target: Pigment_orange
definition source: BactoTraits databaseV2 Jun2022.csv

pink pigmented
type: Class
subclass of: pigmentation
has related synonym: Pigment_pink

Axiom
annotated source: pink pigmented
annotated property: hasRelatedSynonym
annotated target: Pigment_pink
definition source: BactoTraits databaseV2 Jun2022.csv

red pigmented
type: Class
subclass of: pigmentation
has related synonym: Pigment_red

Axiom
annotated source: red pigmented
annotated property: hasRelatedSynonym
annotated target: Pigment_red
definition source: BactoTraits databaseV2 Jun2022.csv

white pigmented
type: Class
subclass of: pigmentation
has related synonym: Pigment_white

Axiom
annotated source: white pigmented
annotated property: hasRelatedSynonym
annotated target: Pigment_white
definition source: BactoTraits databaseV2 Jun2022.csv

yellow pigmented
type: Class
subclass of: pigmentation
has related synonym: Pigment_yellow

Axiom
annotated source: yellow pigmented
annotated property: hasRelatedSynonym
annotated target: Pigment_yellow
definition source: BactoTraits databaseV2 Jun2022.csv

carotenoid pigmentation
type: Class
subclass of: pigmentation
has related synonym: Pigment_carotenoid

Axiom
annotated source: carotenoid pigmentation
annotated property: hasRelatedSynonym
annotated target: Pigment_carotenoid
definition source: BactoTraits databaseV2 Jun2022.csv

pathogenic to host
type: Class
subclass of: phenotype
definition: A phenotype where a microbe is a pathogen of of some host organism.
has related synonym: General.keywords
has related synonym: Safety information.risk assessment

Axiom
annotated source: pathogenic to host
annotated property: definition
annotated target: A phenotype where a microbe is a pathogen of of some host organism.
definition source: OMP_0000068
definition source: OMP_0007284

Axiom
annotated source: pathogenic to host
annotated property: hasRelatedSynonym
annotated target: General.keywords
definition source: bacdive.dsmz.de

Axiom
annotated source: pathogenic to host
annotated property: hasRelatedSynonym
annotated target: Safety information.risk assessment
definition source: bacdive.dsmz.de

animal pathogen
type: Class
subclass of: pathogenic to host
definition: A pathogen that infects organisms in the kingdom Metazoa.
has related synonym: animal pathogen

Axiom
annotated source: animal pathogen
annotated property: hasRelatedSynonym
annotated target: animal pathogen
definition source: bacdive.dsmz.de

plant pathogen
type: Class
subclass of: pathogenic to host
definition: A pathogen that infects organisms in the kingdom Viridiplantae.
has related synonym: plant pathogen

Axiom
annotated source: plant pathogen
annotated property: hasRelatedSynonym
annotated target: plant pathogen
definition source: bacdive.dsmz.de

human pathogen
type: Class
subclass of: pathogenic to host
definition: A pathogen that infects organisms of the species Homo sapiens.
has related synonym: human pathogen

Axiom
annotated source: human pathogen
annotated property: definition
annotated target: A pathogen that infects organisms of the species Homo sapiens.
definition source: IDO_0000639

Axiom
annotated source: human pathogen
annotated property: hasRelatedSynonym
annotated target: human pathogen
definition source: bacdive.dsmz.de

growth medium
type: Class
subclass of: material entity
definition: A processed material that provides the nutrients and environmental conditions necessary for the cultivation of microorganisms in vitro. Growth media may be liquid (broth) or solid (agar-based) and are formulated to support the growth of specific types of organisms.
comment: This class is equivalent to OBI:0000079 'culture medium'. It is included in METPO to serve as the range for growth-related object properties.

Axiom
annotated source: growth medium
annotated property: definition
annotated target: A processed material that provides the nutrients and environmental conditions necessary for the cultivation of microorganisms in vitro. Growth media may be liquid (broth) or solid (agar-based) and are formulated to support the growth of specific types of organisms.
definition source: OBI_0000079