---
name: mixs
description: >-
  This file contains a YAML-formatted specification of the Minimum Information about any (x) Sequence (MIxS) standard, generated using LinkML (https://linkml.io/linkml/). This file is released by the Genomic Standards Consortium (GSC; https://www.gensc.org/) for use by anyone handling data or information about biological sequences. This file is also used as an authoritative 'source of truth' to generate downstream GSC artifacts, available here: https://github.com/GenomicsStandardsConsortium/mixs/tree/main/project
comments:
  - 'slot titles that are associated with more than one slot name/SCN: host sex'
source: https://github.com/GenomicsStandardsConsortium/mixs/raw/issue-610-temp-mixs-xlsx-home/mixs/excel/mixs_v6.xlsx
id: https://w3id.org/mixs
version: v6.2.0
imports:
  - linkml:types
prefixes:
  linkml: https://w3id.org/linkml/
  MIXS: https://w3id.org/mixs/
  xsd: http://www.w3.org/2001/XMLSchema#
  shex: http://www.w3.org/ns/shex#
  schema: http://schema.org/
default_prefix: MIXS
default_range: string
subsets:
  combination_classes:
  sequencing:
  environment:
  nucleic acid sequence source:
  investigation:
enums:
  BiolStatEnum:
    permissible_values:
      breeder's line:
      clonal selection:
      hybrid:
      inbred line:
      mutant:
      natural:
      semi-natural:
      wild:
  AssemblyQualEnum:
    permissible_values:
      Finished genome:
      High-quality draft genome:
      Medium-quality draft genome:
      Low-quality draft genome:
      Genome fragment(s):
  AeroStrucEnum:
    permissible_values:
      glider:
      plane:
  AnimalBodyCondEnum:
    permissible_values:
      normal:
      over conditioned:
      under conditioned:
  AnimalSexEnum:
    permissible_values:
      castrated female:
      castrated male:
      intact female:
      intact male:
  ArchStrucEnum:
    permissible_values:
      building:
      home:
      shed:
  BinParamEnum:
    permissible_values:
      codon usage:
      combination:
      coverage:
      homology search:
      kmer:
  BioticRelationshipEnum:
    permissible_values:
      commensalism:
      free living:
      mutualism:
      parasitism:
      symbiotic:
  BuildingSettingEnum:
    permissible_values:
      exurban:
      rural:
      suburban:
      urban:
  BuildDocsEnum:
    permissible_values:
      building information model:
      commissioning report:
      complaint logs:
      contract administration:
      cost estimate:
      janitorial schedules or logs:
      maintenance plans:
      schedule:
      sections:
      shop drawings:
      submittals:
      ventilation system:
      windows:
  BuildOccupTypeEnum:
    permissible_values:
      airport:
      commercial:
      health care:
      high rise:
      low rise:
      market:
      office:
      residence:
      residential:
      restaurant:
      school:
      sports complex:
      wood framed:
  BuiltStrucSetEnum:
    permissible_values:
      rural:
      urban:
  CeilFinishMatEnum:
    permissible_values:
      PVC:
      drywall:
      fiberglass:
      metal:
      mineral fibre:
      mineral wool/calcium silicate:
      plasterboard:
      stucco:
      tiles:
      wood:
  CeilStrucEnum:
    permissible_values:
      concrete:
      wood frame:
  CeilTypeEnum:
    permissible_values:
      barrel-shaped:
      cathedral:
      coffered:
      concave:
      cove:
      dropped:
      stretched:
  ComplApprEnum:
    permissible_values:
      marker gene:
      other:
      reference based:
  ContamScreenInputEnum:
    permissible_values:
      contigs:
      reads:
  CultResultEnum:
    permissible_values:
      absent:
      active:
      inactive:
      negative:
      'no':
      positive:
      present:
      'yes':
  DeposEnvEnum:
    permissible_values:
      Continental - Aeolian:
      Continental - Alluvial:
      Continental - Fluvial:
      Continental - Lacustrine:
      Marine - Deep:
      Marine - Reef:
      Marine - Shallow:
      Other - Evaporite:
      Other - Glacial:
      Other - Volcanic:
      Transitional - Beach:
      Transitional - Deltaic:
      Transitional - Lagoonal:
      Transitional - Lake:
      Transitional - Tidal:
      other:
  DominantHandEnum:
    permissible_values:
      ambidextrous:
      left:
      right:
  DoorCompTypeEnum:
    permissible_values:
      metal covered:
      revolving:
      sliding:
      telescopic:
  DoorDirectEnum:
    permissible_values:
      inward:
      outward:
      sideways:
  DoorMatEnum:
    permissible_values:
      aluminum:
      cellular PVC:
      engineered plastic:
      fiberboard:
      fiberglass:
      metal:
      thermoplastic alloy:
      vinyl:
      wood:
      wood/plastic composite:
  DoorMoveEnum:
    permissible_values:
      collapsible:
      folding:
      revolving:
      rolling shutter:
      sliding:
      swinging:
  DoorTypeEnum:
    permissible_values:
      composite:
      metal:
      wooden:
  DoorTypeMetalEnum:
    permissible_values:
      collapsible:
      corrugated steel:
      hollow:
      rolling shutters:
      steel plate:
  DrainageClassEnum:
    permissible_values:
      excessively drained:
      moderately well:
      poorly:
      somewhat poorly:
      very poorly:
      well:
  DrawingsEnum:
    permissible_values:
      as built:
      bid:
      building navigation map:
      construction:
      design:
      diagram:
      operation:
      sketch:
  ExtrWeatherEventEnum:
    permissible_values:
      drought:
      dust storm:
      extreme cold:
      extreme heat:
      flood:
      frost:
      hail:
      high precipitation:
      high winds:
  FacilityTypeEnum:
    permissible_values:
      ambient storage:
      caterer-catering point:
      distribution:
      frozen storage:
      importer-broker:
      interstate conveyance:
      labeler-relabeler:
      manufacturing-processing:
      packaging:
      refrigerated storage:
      storage:
  FaoClassEnum:
    permissible_values:
      Acrisols:
      Alisols:
      Andosols:
      Anthrosols:
      Arenosols:
      Calcisols:
      Cambisols:
      Chernozems:
      Cryosols:
      Durisols:
      Ferralsols:
      Fluvisols:
      Gleysols:
      Greyzems:
        deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696
      Gypsisols:
      Histosols:
      Kastanozems:
      Lithosols:
        deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696
      Leptosols:
      Lixisols:
      Luvisols:
      Nitosols:
      Phaeozems:
      Planosols:
      Plinthosols:
      Podzols:
      Podzoluvisols:
        deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696
      Rankers:
        deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696
      Regosols:
        deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696
      Rendzinas:
        deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696
      Solonchaks:
      Solonetz:
      Stagnosols:
      Technosols:
      Umbrisols:
      Vertisols:
      Yermosols:
        deprecated: true, value no longer recognized by FAO, https://github.com/GenomicsStandardsConsortium/mixs/issues/696
  FarmWaterSourceEnum:
    permissible_values:
      brackish:
      canal:
      collected rainwater:
      ditch:
      estuary:
      freshwater:
      lake:
      manmade:
      melt pond:
      municipal:
      natural:
      pond:
      reservior:
      river:
      saline:
      storage tank:
      stream:
      well:
  FilterTypeEnum:
    permissible_values:
      HEPA:
      chemical air filter:
      electrostatic:
      gas-phase or ultraviolet air treatments:
      low-MERV pleated media:
      particulate air filter:
  FireplaceTypeEnum:
    permissible_values:
      gas burning:
      wood burning:
  FloorStrucEnum:
    permissible_values:
      balcony:
      concrete:
      floating floor:
      glass floor:
      raised floor:
      sprung floor:
      wood-framed:
  FloorWaterMoldEnum:
    permissible_values:
      bulging walls:
      ceiling discoloration:
      condensation:
      floor discoloration:
      mold odor:
      peeling paint or wallpaper:
      wall discoloration:
      water stains:
      wet floor:
  FoodCleanProcEnum:
    permissible_values:
      drum and drain:
      manual spinner:
      rinsed with sanitizer solution:
      rinsed with water:
      scrubbed with brush:
      scrubbed with hand:
      soaking:
  FoodTraceListEnum:
    permissible_values:
      cheeses-other than hard cheeses:
      crustaceans:
      cucumbers:
      finfish-including smoked finfish:
      fruits and vegetables-fresh cut:
      herbs-fresh:
      leafy greens-including fresh cut leafy greens:
      melons:
      mollusks-bivalves:
      nut butter:
      peppers:
      ready to eat deli salads:
      shell eggs:
      sprouts:
      tomatoes:
      tropical tree fruits:
  FreqCleanEnum:
    permissible_values:
      Annually:
      Daily:
      Monthly:
      Quarterly:
      Weekly:
      other:
  FurnitureEnum:
    permissible_values:
      cabinet:
      chair:
      desks:
  GenderRestroomEnum:
    permissible_values:
      all gender:
      female:
      gender neutral:
      male:
      male and female:
      unisex:
  GrowthHabitEnum:
    permissible_values:
      erect:
      prostrate:
      semi-erect:
      spreading:
  HandidnessEnum:
    permissible_values:
      ambidexterity:
      left handedness:
      mixed-handedness:
      right handedness:
  HcrEnum:
    permissible_values:
      Coalbed:
      Gas Reservoir:
      Oil Reservoir:
      Oil Sand:
      Shale:
      Tight Gas Reservoir:
      Tight Oil Reservoir:
      other:
  HcProducedEnum:
    permissible_values:
      Bitumen:
      Coalbed Methane:
      Gas:
      Gas-Condensate:
      Oil:
      other:
  HeatCoolTypeEnum:
    permissible_values:
      forced air system:
      heat pump:
      radiant system:
      steam forced heat:
      wood stove:
  HeatSysDelivMethEnum:
    permissible_values:
      conductive:
      radiant:
  HostCellularLocEnum:
    permissible_values:
      extracellular:
      intracellular:
      not determined:
  HostDependenceEnum:
    permissible_values:
      facultative:
      obligate:
  HostPredApprEnum:
    permissible_values:
      CRISPR spacer match:
      co-occurrence:
      combination:
      host sequence similarity:
      kmer similarity:
      other:
      provirus:
  HostSpecificityEnum:
    permissible_values:
      family-specific:
      generalist:
      genus-specific:
      species-specific:
  IndoorSpaceEnum:
    permissible_values:
      bathroom:
      bedroom:
      elevator:
      foyer:
      hallway:
      kitchen:
      locker room:
      office:
  IndoorSurfEnum:
    permissible_values:
      cabinet:
      ceiling:
      counter top:
      door:
      shelving:
      vent cover:
      wall:
      window:
  LibLayoutEnum:
    permissible_values:
      other:
      paired:
      single:
      vector:
  LightTypeEnum:
    permissible_values:
      desk lamp:
      electric light:
      fluorescent lights:
      natural light:
      none:
  LithologyEnum:
    permissible_values:
      Basement:
      Chalk:
      Chert:
      Coal:
      Conglomerate:
      Diatomite:
      Dolomite:
      Limestone:
      Sandstone:
      Shale:
      Siltstone:
      Volcanic:
      other:
  MagCovSoftwareEnum:
    permissible_values:
      bbmap:
      bowtie:
      bwa:
      other:
  MechStrucEnum:
    permissible_values:
      boat:
      bus:
      car:
      carriage:
      coach:
      elevator:
      escalator:
      subway:
      train:
  ModeTransmissionEnum:
    permissible_values:
      horizontal:castrator:
      horizontal:directly transmitted:
      horizontal:micropredator:
      horizontal:parasitoid:
      horizontal:trophically transmitted:
      horizontal:vector transmitted:
      vertical:
  NegContTypeEnum:
    permissible_values:
      DNA-free PCR mix:
      distilled water:
      empty collection device:
      empty collection tube:
      phosphate buffer:
      sterile swab:
      sterile syringe:
  OccupDocumentEnum:
    permissible_values:
      automated count:
      estimate:
      manual count:
      videos:
  OxyStatSampEnum:
    permissible_values:
      aerobic:
      anaerobic:
      other:
  PlantReprodCropEnum:
    permissible_values:
      plant cutting:
      pregerminated seed:
      ratoon:
      seed:
      seedling:
      whole mature plant:
  PlantSexEnum:
    permissible_values:
      Androdioecious:
      Androecious:
      Androgynomonoecious:
      Androgynous:
      Andromonoecious:
      Bisexual:
      Dichogamous:
      Diclinous:
      Dioecious:
      Gynodioecious:
      Gynoecious:
      Gynomonoecious:
      Hermaphroditic:
      Imperfect:
      Monoclinous:
      Monoecious:
      Perfect:
      Polygamodioecious:
      Polygamomonoecious:
      Polygamous:
      Protandrous:
      Protogynous:
      Subandroecious:
      Subdioecious:
      Subgynoecious:
      Synoecious:
      Trimonoecious:
      Trioecious:
      Unisexual:
  PredGenomeStrucEnum:
    permissible_values:
      non-segmented:
      segmented:
      undetermined:
  ProfilePositionEnum:
    permissible_values:
      backslope:
      footslope:
      shoulder:
      summit:
      toeslope:
  QuadPosEnum:
    permissible_values:
      East side:
      North side:
      South side:
      West side:
  RelSampLocEnum:
    permissible_values:
      center of car:
      edge of car:
      under a seat:
  RelToOxygenEnum:
    permissible_values:
      aerobe:
      anaerobe:
      facultative:
      microaerophilic:
      microanaerobe:
      obligate aerobe:
      obligate anaerobe:
  RoomCondtEnum:
    permissible_values:
      damaged:
      needs repair:
      new:
      rupture:
      visible signs of mold/mildew:
      visible wear:
  RoomConnectedEnum:
    permissible_values:
      attic:
      bathroom:
      closet:
      conference room:
      elevator:
      examining room:
      hallway:
      kitchen:
      mail room:
      office:
      stairwell:
  RoomLocEnum:
    permissible_values:
      corner room:
      exterior wall:
      interior room:
  RoomSampPosEnum:
    permissible_values:
      center:
      east corner:
      north corner:
      northeast corner:
      northwest corner:
      south corner:
      southeast corner:
      southwest corner:
      west corner:
  RouteTransmissionEnum:
    permissible_values:
      environmental:faecal-oral:
      transplacental:
      vector-borne:vector penetration:
  SampCaptStatusEnum:
    permissible_values:
      active surveillance in response to an outbreak:
      active surveillance not initiated by an outbreak:
      farm sample:
      market sample:
      other:
  SampCollectPointEnum:
    permissible_values:
      drilling rig:
      other:
      separator:
      storage tank:
      test well:
      well:
      wellhead:
  SampDisStageEnum:
    permissible_values:
      dissemination:
      growth and reproduction:
      infection:
      inoculation:
      other:
      penetration:
  SampLocConditionEnum:
    permissible_values:
      damaged:
      new:
      rupture:
      visible signs of mold-mildew:
      visible weariness repair:
  SampSubtypeEnum:
    permissible_values:
      biofilm:
      not applicable:
      oil phase:
      other:
      water phase:
  SampSurfMoistureEnum:
    permissible_values:
      intermittent moisture:
      not present:
      submerged:
  SampTransportContEnum:
    permissible_values:
      bottle:
      cooler:
      glass vial:
      plastic vial:
      vendor supplied container:
  SampWeatherEnum:
    permissible_values:
      clear sky:
      cloudy:
      foggy:
      hail:
      rain:
      sleet:
      snow:
      sunny:
      windy:
  ScLysisApproachEnum:
    permissible_values:
      chemical:
      combination:
      enzymatic:
      physical:
  SeasonUseEnum:
    permissible_values:
      Fall:
      Spring:
      Summer:
      Winter:
  SedimentTypeEnum:
    permissible_values:
      biogenous:
      cosmogenous:
      hydrogenous:
      lithogenous:
  SeqQualityCheckEnum:
    permissible_values:
      manually edited:
      none:
  ShadingDeviceLocEnum:
    permissible_values:
      exterior:
      interior:
  ShadingDeviceTypeEnum:
    permissible_values:
      bahama shutters:
      exterior roll blind:
      gambrel awning:
      hood awning:
      porchroller awning:
      sarasota shutters:
      slatted aluminum:
      solid aluminum awning:
      sun screen:
      tree:
      trellis:
      venetian awning:
  CompassDirections8Enum:
    permissible_values:
      east:
      north:
      northeast:
      northwest:
      south:
      southeast:
      southwest:
      west:
  MoldVisibilityEnum:
    permissible_values:
      no presence of mold visible:
      presence of mold visible:
  DamagedRupturedEnum:
    permissible_values:
      damaged:
      needs repair:
      new:
      rupture:
      visible wear:
  DamagedEnum:
    permissible_values:
      damaged:
      needs repair:
      new:
      rupture:
      visible wear:
  CeilingWallTextureEnum:
    permissible_values:
      Santa-Fe texture:
      crows feet:
      crows-foot stomp:
      double skip:
      hawk and trowel:
      knockdown:
      orange peel:
      popcorn:
      rosebud stomp:
      skip trowel:
      smooth:
      stomp knockdown:
      swirl:
  GeolAgeEnum:
    permissible_values:
      Archean:
      Cambrian:
      Carboniferous:
      Cenozoic:
      Cretaceous:
      Devonian:
      Jurassic:
      Mesozoic:
      Neogene:
      Ordovician:
      Paleogene:
      Paleozoic:
      Permian:
      Precambrian:
      Proterozoic:
      Silurian:
      Triassic:
      other:
  SoilHorizonEnum:
    permissible_values:
      A horizon:
      B horizon:
      C horizon:
      E horizon:
      O horizon:
      Permafrost:
      R layer:
  SoilTextureClassEnum:
    permissible_values:
      clay:
      clay loam:
      loam:
      loamy sand:
      sand:
      sandy clay:
      sandy clay loam:
      sandy loam:
      silt:
      silt loam:
      silty clay:
      silty clay loam:
  SortTechEnum:
    permissible_values:
      flow cytometric cell sorting:
      lazer-tweezing:
      microfluidics:
      micromanipulation:
      optical manipulation:
      other:
  SpaceTypStateEnum:
    permissible_values:
      typically occupied:
      typically unoccupied:
  SpecificEnum:
    permissible_values:
      as built:
      bid:
      construction:
      design:
      operation:
      photos:
  SrDepEnvEnum:
    permissible_values:
      Fluvioldeltaic:
      Fluviomarine:
      Lacustine:
      Marine:
      other:
  SrKerogTypeEnum:
    permissible_values:
      Type I:
      Type II:
      Type III:
      Type IV:
      other:
  SrLithologyEnum:
    permissible_values:
      Biosilicieous:
      Carbonate:
      Clastic:
      Coal:
      other:
  SubstructureTypeEnum:
    permissible_values:
      basement:
      crawlspace:
      slab on grade:
  SurfAirContEnum:
    permissible_values:
      biocides:
      biological contaminants:
      dust:
      nutrients:
      organic matter:
      particulate matter:
      radon:
      volatile organic compounds:
  SurfMaterialEnum:
    permissible_values:
      adobe:
      carpet:
      cinder blocks:
      concrete:
      glass:
      hay bales:
      metal:
      paint:
      plastic:
      stainless steel:
      stone:
      stucco:
      tile:
      vinyl:
      wood:
  SymbiontHostRoleEnum:
    permissible_values:
      accidental:
      dead-end:
      definitive:
      intermediate:
      paratenic:
      reservoir:
      single host:
  SymLifeCycleTypeEnum:
    permissible_values:
      complex life cycle:
      simple life cycle:
  TaxIdentEnum:
    permissible_values:
      16S rRNA gene:
      multi-marker approach:
      other:
  TidalStageEnum:
    permissible_values:
      ebb tide:
      flood tide:
      high tide:
      low tide:
  TillageEnum:
    permissible_values:
      chisel:
      cutting disc:
      disc plough:
      drill:
      mouldboard:
      ridge till:
      strip tillage:
      tined:
      zonal tillage:
  TrainLineEnum:
    permissible_values:
      green:
      orange:
      red:
  TrainStatLocEnum:
    permissible_values:
      forest hills:
      riverside:
      south station above ground:
      south station amtrak:
      south station underground:
  TrainStopLocEnum:
    permissible_values:
      downtown:
      end:
      mid:
  TrophicLevelEnum:
    permissible_values:
      autotroph:
      carboxydotroph:
      chemoautolithotroph:
      chemoautotroph:
      chemoheterotroph:
      chemolithoautotroph:
      chemolithotroph:
      chemoorganoheterotroph:
      chemoorganotroph:
      chemosynthetic:
      chemotroph:
      copiotroph:
      diazotroph:
      facultative:
      heterotroph:
      lithoautotroph:
      lithoheterotroph:
      lithotroph:
      methanotroph:
      methylotroph:
      mixotroph:
      obligate:
      oligotroph:
      organoheterotroph:
      organotroph:
      photoautotroph:
      photoheterotroph:
      photolithoautotroph:
      photolithotroph:
      photosynthetic:
      phototroph:
  TypeOfSymbiosisEnum:
    permissible_values:
      commensalistic:
      mutualistic:
      parasitic:
  UrineCollectMethEnum:
    permissible_values:
      catheter:
      clean catch:
  UrobiomSexEnum:
    permissible_values:
      female:
      hermaphrodite:
      male:
      neuter:
  VirusEnrichApprEnum:
    permissible_values:
      CsCl density gradient:
      DNAse:
      FeCl Precipitation:
      PEG Precipitation:
      RNAse:
      centrifugation:
      filtration:
      none:
      other:
      targeted sequence capture:
      ultracentrifugation:
      ultrafiltration:
  WallConstTypeEnum:
    permissible_values:
      fire resistive:
      frame construction:
      joisted masonry:
      light noncombustible:
      masonry noncombustible:
      modified fire resistive:
  WallFinishMatEnum:
    permissible_values:
      acoustical treatment:
      gypsum board:
      gypsum plaster:
      masonry:
      metal:
      plaster:
      stone facing:
      terrazzo:
      tile:
      veneer plaster:
      wood:
  WallSurfTreatmentEnum:
    permissible_values:
      fabric:
      no treatment:
      painted:
      paneling:
      stucco:
      wall paper:
  WaterFeatTypeEnum:
    permissible_values:
      fountain:
      pool:
      standing feature:
      stream:
      waterfall:
  WeekdayEnum:
    permissible_values:
      Friday:
      Monday:
      Saturday:
      Sunday:
      Thursday:
      Tuesday:
      Wednesday:
  WgaAmpApprEnum:
    permissible_values:
      mda based:
      pcr based:
  WindowCoverEnum:
    permissible_values:
      blinds:
      curtains:
      none:
  WindowHorizPosEnum:
    permissible_values:
      left:
      middle:
      right:
  WindowMatEnum:
    permissible_values:
      clad:
      fiberglass:
      metal:
      vinyl:
      wood:
  WindowStatusEnum:
    permissible_values:
      closed:
      open:
  WindowTypeEnum:
    permissible_values:
      fixed window:
      horizontal sash window:
      single-hung sash window:
  WindowVertPosEnum:
    permissible_values:
      bottom:
      high:
      low:
      middle:
      top:
slots:
  migs_ba_data:
    description: Data that comply with checklist MigsBa
    title: MigsBa data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_data
    multivalued: true
    range: MigsBa
    inlined: true
    inlined_as_list: true
  agriculture_data:
    description: Data that comply with Extension Agriculture
    title: Agriculture data
    domain: MixsCompliantData
    slot_uri: MIXS:agriculture_data
    multivalued: true
    range: Agriculture
    inlined: true
    inlined_as_list: true
  migs_ba_agriculture_data:
    description: Data that comply with MigsBa combined with Agriculture
    title: MigsBaAgriculture data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_agriculture_data
    multivalued: true
    range: MigsBaAgriculture
    inlined: true
    inlined_as_list: true
  air_data:
    description: Data that comply with Extension Air
    title: Air data
    keywords:
      - air
    domain: MixsCompliantData
    slot_uri: MIXS:air_data
    multivalued: true
    range: Air
    inlined: true
    inlined_as_list: true
  migs_ba_air_data:
    description: Data that comply with MigsBa combined with Air
    title: MigsBaAir data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_air_data
    multivalued: true
    range: MigsBaAir
    inlined: true
    inlined_as_list: true
  built_environment_data:
    description: Data that comply with Extension BuiltEnvironment
    title: BuiltEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:built_environment_data
    multivalued: true
    range: BuiltEnvironment
    inlined: true
    inlined_as_list: true
  migs_ba_built_environment_data:
    description: Data that comply with MigsBa combined with BuiltEnvironment
    title: MigsBaBuiltEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_built_environment_data
    multivalued: true
    range: MigsBaBuiltEnvironment
    inlined: true
    inlined_as_list: true
  food_animal_and_animal_feed_data:
    description: Data that comply with Extension FoodAnimalAndAnimalFeed
    title: FoodAnimalAndAnimalFeed data
    domain: MixsCompliantData
    slot_uri: MIXS:food_animal_and_animal_feed_data
    multivalued: true
    range: FoodAnimalAndAnimalFeed
    inlined: true
    inlined_as_list: true
  migs_ba_food_animal_and_animal_feed_data:
    description: Data that comply with MigsBa combined with FoodAnimalAndAnimalFeed
    title: MigsBaFoodAnimalAndAnimalFeed data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_food_animal_and_animal_feed_data
    multivalued: true
    range: MigsBaFoodAnimalAndAnimalFeed
    inlined: true
    inlined_as_list: true
  food_farm_environment_data:
    description: Data that comply with Extension FoodFarmEnvironment
    title: FoodFarmEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:food_farm_environment_data
    multivalued: true
    range: FoodFarmEnvironment
    inlined: true
    inlined_as_list: true
  migs_ba_food_farm_environment_data:
    description: Data that comply with MigsBa combined with FoodFarmEnvironment
    title: MigsBaFoodFarmEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_food_farm_environment_data
    multivalued: true
    range: MigsBaFoodFarmEnvironment
    inlined: true
    inlined_as_list: true
  food_food_production_facility_data:
    description: Data that comply with Extension FoodFoodProductionFacility
    title: FoodFoodProductionFacility data
    domain: MixsCompliantData
    slot_uri: MIXS:food_food_production_facility_data
    multivalued: true
    range: FoodFoodProductionFacility
    inlined: true
    inlined_as_list: true
  migs_ba_food_food_production_facility_data:
    description: Data that comply with MigsBa combined with FoodFoodProductionFacility
    title: MigsBaFoodFoodProductionFacility data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_food_food_production_facility_data
    multivalued: true
    range: MigsBaFoodFoodProductionFacility
    inlined: true
    inlined_as_list: true
  food_human_foods_data:
    description: Data that comply with Extension FoodHumanFoods
    title: FoodHumanFoods data
    domain: MixsCompliantData
    slot_uri: MIXS:food_human_foods_data
    multivalued: true
    range: FoodHumanFoods
    inlined: true
    inlined_as_list: true
  migs_ba_food_human_foods_data:
    description: Data that comply with MigsBa combined with FoodHumanFoods
    title: MigsBaFoodHumanFoods data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_food_human_foods_data
    multivalued: true
    range: MigsBaFoodHumanFoods
    inlined: true
    inlined_as_list: true
  host_associated_data:
    description: Data that comply with Extension HostAssociated
    title: HostAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:host_associated_data
    multivalued: true
    range: HostAssociated
    inlined: true
    inlined_as_list: true
  migs_ba_host_associated_data:
    description: Data that comply with MigsBa combined with HostAssociated
    title: MigsBaHostAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_host_associated_data
    multivalued: true
    range: MigsBaHostAssociated
    inlined: true
    inlined_as_list: true
  human_associated_data:
    description: Data that comply with Extension HumanAssociated
    title: HumanAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:human_associated_data
    multivalued: true
    range: HumanAssociated
    inlined: true
    inlined_as_list: true
  migs_ba_human_associated_data:
    description: Data that comply with MigsBa combined with HumanAssociated
    title: MigsBaHumanAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_human_associated_data
    multivalued: true
    range: MigsBaHumanAssociated
    inlined: true
    inlined_as_list: true
  human_gut_data:
    description: Data that comply with Extension HumanGut
    title: HumanGut data
    domain: MixsCompliantData
    slot_uri: MIXS:human_gut_data
    multivalued: true
    range: HumanGut
    inlined: true
    inlined_as_list: true
  migs_ba_human_gut_data:
    description: Data that comply with MigsBa combined with HumanGut
    title: MigsBaHumanGut data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_human_gut_data
    multivalued: true
    range: MigsBaHumanGut
    inlined: true
    inlined_as_list: true
  human_oral_data:
    description: Data that comply with Extension HumanOral
    title: HumanOral data
    domain: MixsCompliantData
    slot_uri: MIXS:human_oral_data
    multivalued: true
    range: HumanOral
    inlined: true
    inlined_as_list: true
  migs_ba_human_oral_data:
    description: Data that comply with MigsBa combined with HumanOral
    title: MigsBaHumanOral data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_human_oral_data
    multivalued: true
    range: MigsBaHumanOral
    inlined: true
    inlined_as_list: true
  human_skin_data:
    description: Data that comply with Extension HumanSkin
    title: HumanSkin data
    domain: MixsCompliantData
    slot_uri: MIXS:human_skin_data
    multivalued: true
    range: HumanSkin
    inlined: true
    inlined_as_list: true
  migs_ba_human_skin_data:
    description: Data that comply with MigsBa combined with HumanSkin
    title: MigsBaHumanSkin data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_human_skin_data
    multivalued: true
    range: MigsBaHumanSkin
    inlined: true
    inlined_as_list: true
  human_vaginal_data:
    description: Data that comply with Extension HumanVaginal
    title: HumanVaginal data
    domain: MixsCompliantData
    slot_uri: MIXS:human_vaginal_data
    multivalued: true
    range: HumanVaginal
    inlined: true
    inlined_as_list: true
  migs_ba_human_vaginal_data:
    description: Data that comply with MigsBa combined with HumanVaginal
    title: MigsBaHumanVaginal data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_human_vaginal_data
    multivalued: true
    range: MigsBaHumanVaginal
    inlined: true
    inlined_as_list: true
  hydrocarbon_resources_cores_data:
    description: Data that comply with Extension HydrocarbonResourcesCores
    title: HydrocarbonResourcesCores data
    domain: MixsCompliantData
    slot_uri: MIXS:hydrocarbon_resources_cores_data
    multivalued: true
    range: HydrocarbonResourcesCores
    inlined: true
    inlined_as_list: true
  migs_ba_hydrocarbon_resources_cores_data:
    description: Data that comply with MigsBa combined with HydrocarbonResourcesCores
    title: MigsBaHydrocarbonResourcesCores data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_hydrocarbon_resources_cores_data
    multivalued: true
    range: MigsBaHydrocarbonResourcesCores
    inlined: true
    inlined_as_list: true
  hydrocarbon_resources_fluids_swabs_data:
    description: Data that comply with Extension HydrocarbonResourcesFluidsSwabs
    title: HydrocarbonResourcesFluidsSwabs data
    domain: MixsCompliantData
    slot_uri: MIXS:hydrocarbon_resources_fluids_swabs_data
    multivalued: true
    range: HydrocarbonResourcesFluidsSwabs
    inlined: true
    inlined_as_list: true
  migs_ba_hydrocarbon_resources_fluids_swabs_data:
    description: Data that comply with MigsBa combined with HydrocarbonResourcesFluidsSwabs
    title: MigsBaHydrocarbonResourcesFluidsSwabs data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_hydrocarbon_resources_fluids_swabs_data
    multivalued: true
    range: MigsBaHydrocarbonResourcesFluidsSwabs
    inlined: true
    inlined_as_list: true
  microbial_mat_biofilm_data:
    description: Data that comply with Extension MicrobialMatBiofilm
    title: MicrobialMatBiofilm data
    domain: MixsCompliantData
    slot_uri: MIXS:microbial_mat_biofilm_data
    multivalued: true
    range: MicrobialMatBiofilm
    inlined: true
    inlined_as_list: true
  migs_ba_microbial_mat_biofilm_data:
    description: Data that comply with MigsBa combined with MicrobialMatBiofilm
    title: MigsBaMicrobialMatBiofilm data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_microbial_mat_biofilm_data
    multivalued: true
    range: MigsBaMicrobialMatBiofilm
    inlined: true
    inlined_as_list: true
  miscellaneous_natural_or_artificial_environment_data:
    description: Data that comply with Extension MiscellaneousNaturalOrArtificialEnvironment
    title: MiscellaneousNaturalOrArtificialEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:miscellaneous_natural_or_artificial_environment_data
    multivalued: true
    range: MiscellaneousNaturalOrArtificialEnvironment
    inlined: true
    inlined_as_list: true
  migs_ba_miscellaneous_natural_or_artificial_environment_data:
    description: Data that comply with MigsBa combined with MiscellaneousNaturalOrArtificialEnvironment
    title: MigsBaMiscellaneousNaturalOrArtificialEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_miscellaneous_natural_or_artificial_environment_data
    multivalued: true
    range: MigsBaMiscellaneousNaturalOrArtificialEnvironment
    inlined: true
    inlined_as_list: true
  plant_associated_data:
    description: Data that comply with Extension PlantAssociated
    title: PlantAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:plant_associated_data
    multivalued: true
    range: PlantAssociated
    inlined: true
    inlined_as_list: true
  migs_ba_plant_associated_data:
    description: Data that comply with MigsBa combined with PlantAssociated
    title: MigsBaPlantAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_plant_associated_data
    multivalued: true
    range: MigsBaPlantAssociated
    inlined: true
    inlined_as_list: true
  sediment_data:
    description: Data that comply with Extension Sediment
    title: Sediment data
    keywords:
      - sediment
    domain: MixsCompliantData
    slot_uri: MIXS:sediment_data
    multivalued: true
    range: Sediment
    inlined: true
    inlined_as_list: true
  migs_ba_sediment_data:
    description: Data that comply with MigsBa combined with Sediment
    title: MigsBaSediment data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_sediment_data
    multivalued: true
    range: MigsBaSediment
    inlined: true
    inlined_as_list: true
  soil_data:
    description: Data that comply with Extension Soil
    title: Soil data
    keywords:
      - soil
    domain: MixsCompliantData
    slot_uri: MIXS:soil_data
    multivalued: true
    range: Soil
    inlined: true
    inlined_as_list: true
  migs_ba_soil_data:
    description: Data that comply with MigsBa combined with Soil
    title: MigsBaSoil data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_soil_data
    multivalued: true
    range: MigsBaSoil
    inlined: true
    inlined_as_list: true
  symbiont_associated_data:
    description: Data that comply with Extension SymbiontAssociated
    title: SymbiontAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:symbiont_associated_data
    multivalued: true
    range: SymbiontAssociated
    inlined: true
    inlined_as_list: true
  migs_ba_symbiont_associated_data:
    description: Data that comply with MigsBa combined with SymbiontAssociated
    title: MigsBaSymbiontAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_symbiont_associated_data
    multivalued: true
    range: MigsBaSymbiontAssociated
    inlined: true
    inlined_as_list: true
  wastewater_sludge_data:
    description: Data that comply with Extension WastewaterSludge
    title: WastewaterSludge data
    domain: MixsCompliantData
    slot_uri: MIXS:wastewater_sludge_data
    multivalued: true
    range: WastewaterSludge
    inlined: true
    inlined_as_list: true
  migs_ba_wastewater_sludge_data:
    description: Data that comply with MigsBa combined with WastewaterSludge
    title: MigsBaWastewaterSludge data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_wastewater_sludge_data
    multivalued: true
    range: MigsBaWastewaterSludge
    inlined: true
    inlined_as_list: true
  water_data:
    description: Data that comply with Extension Water
    title: Water data
    keywords:
      - water
    domain: MixsCompliantData
    slot_uri: MIXS:water_data
    multivalued: true
    range: Water
    inlined: true
    inlined_as_list: true
  migs_ba_water_data:
    description: Data that comply with MigsBa combined with Water
    title: MigsBaWater data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_ba_water_data
    multivalued: true
    range: MigsBaWater
    inlined: true
    inlined_as_list: true
  migs_eu_data:
    description: Data that comply with checklist MigsEu
    title: MigsEu data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_data
    multivalued: true
    range: MigsEu
    inlined: true
    inlined_as_list: true
  migs_eu_agriculture_data:
    description: Data that comply with MigsEu combined with Agriculture
    title: MigsEuAgriculture data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_agriculture_data
    multivalued: true
    range: MigsEuAgriculture
    inlined: true
    inlined_as_list: true
  migs_eu_air_data:
    description: Data that comply with MigsEu combined with Air
    title: MigsEuAir data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_air_data
    multivalued: true
    range: MigsEuAir
    inlined: true
    inlined_as_list: true
  migs_eu_built_environment_data:
    description: Data that comply with MigsEu combined with BuiltEnvironment
    title: MigsEuBuiltEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_built_environment_data
    multivalued: true
    range: MigsEuBuiltEnvironment
    inlined: true
    inlined_as_list: true
  migs_eu_food_animal_and_animal_feed_data:
    description: Data that comply with MigsEu combined with FoodAnimalAndAnimalFeed
    title: MigsEuFoodAnimalAndAnimalFeed data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_food_animal_and_animal_feed_data
    multivalued: true
    range: MigsEuFoodAnimalAndAnimalFeed
    inlined: true
    inlined_as_list: true
  migs_eu_food_farm_environment_data:
    description: Data that comply with MigsEu combined with FoodFarmEnvironment
    title: MigsEuFoodFarmEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_food_farm_environment_data
    multivalued: true
    range: MigsEuFoodFarmEnvironment
    inlined: true
    inlined_as_list: true
  migs_eu_food_food_production_facility_data:
    description: Data that comply with MigsEu combined with FoodFoodProductionFacility
    title: MigsEuFoodFoodProductionFacility data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_food_food_production_facility_data
    multivalued: true
    range: MigsEuFoodFoodProductionFacility
    inlined: true
    inlined_as_list: true
  migs_eu_food_human_foods_data:
    description: Data that comply with MigsEu combined with FoodHumanFoods
    title: MigsEuFoodHumanFoods data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_food_human_foods_data
    multivalued: true
    range: MigsEuFoodHumanFoods
    inlined: true
    inlined_as_list: true
  migs_eu_host_associated_data:
    description: Data that comply with MigsEu combined with HostAssociated
    title: MigsEuHostAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_host_associated_data
    multivalued: true
    range: MigsEuHostAssociated
    inlined: true
    inlined_as_list: true
  migs_eu_human_associated_data:
    description: Data that comply with MigsEu combined with HumanAssociated
    title: MigsEuHumanAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_human_associated_data
    multivalued: true
    range: MigsEuHumanAssociated
    inlined: true
    inlined_as_list: true
  migs_eu_human_gut_data:
    description: Data that comply with MigsEu combined with HumanGut
    title: MigsEuHumanGut data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_human_gut_data
    multivalued: true
    range: MigsEuHumanGut
    inlined: true
    inlined_as_list: true
  migs_eu_human_oral_data:
    description: Data that comply with MigsEu combined with HumanOral
    title: MigsEuHumanOral data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_human_oral_data
    multivalued: true
    range: MigsEuHumanOral
    inlined: true
    inlined_as_list: true
  migs_eu_human_skin_data:
    description: Data that comply with MigsEu combined with HumanSkin
    title: MigsEuHumanSkin data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_human_skin_data
    multivalued: true
    range: MigsEuHumanSkin
    inlined: true
    inlined_as_list: true
  migs_eu_human_vaginal_data:
    description: Data that comply with MigsEu combined with HumanVaginal
    title: MigsEuHumanVaginal data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_human_vaginal_data
    multivalued: true
    range: MigsEuHumanVaginal
    inlined: true
    inlined_as_list: true
  migs_eu_hydrocarbon_resources_cores_data:
    description: Data that comply with MigsEu combined with HydrocarbonResourcesCores
    title: MigsEuHydrocarbonResourcesCores data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_hydrocarbon_resources_cores_data
    multivalued: true
    range: MigsEuHydrocarbonResourcesCores
    inlined: true
    inlined_as_list: true
  migs_eu_hydrocarbon_resources_fluids_swabs_data:
    description: Data that comply with MigsEu combined with HydrocarbonResourcesFluidsSwabs
    title: MigsEuHydrocarbonResourcesFluidsSwabs data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_hydrocarbon_resources_fluids_swabs_data
    multivalued: true
    range: MigsEuHydrocarbonResourcesFluidsSwabs
    inlined: true
    inlined_as_list: true
  migs_eu_microbial_mat_biofilm_data:
    description: Data that comply with MigsEu combined with MicrobialMatBiofilm
    title: MigsEuMicrobialMatBiofilm data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_microbial_mat_biofilm_data
    multivalued: true
    range: MigsEuMicrobialMatBiofilm
    inlined: true
    inlined_as_list: true
  migs_eu_miscellaneous_natural_or_artificial_environment_data:
    description: Data that comply with MigsEu combined with MiscellaneousNaturalOrArtificialEnvironment
    title: MigsEuMiscellaneousNaturalOrArtificialEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_miscellaneous_natural_or_artificial_environment_data
    multivalued: true
    range: MigsEuMiscellaneousNaturalOrArtificialEnvironment
    inlined: true
    inlined_as_list: true
  migs_eu_plant_associated_data:
    description: Data that comply with MigsEu combined with PlantAssociated
    title: MigsEuPlantAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_plant_associated_data
    multivalued: true
    range: MigsEuPlantAssociated
    inlined: true
    inlined_as_list: true
  migs_eu_sediment_data:
    description: Data that comply with MigsEu combined with Sediment
    title: MigsEuSediment data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_sediment_data
    multivalued: true
    range: MigsEuSediment
    inlined: true
    inlined_as_list: true
  migs_eu_soil_data:
    description: Data that comply with MigsEu combined with Soil
    title: MigsEuSoil data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_soil_data
    multivalued: true
    range: MigsEuSoil
    inlined: true
    inlined_as_list: true
  migs_eu_symbiont_associated_data:
    description: Data that comply with MigsEu combined with SymbiontAssociated
    title: MigsEuSymbiontAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_symbiont_associated_data
    multivalued: true
    range: MigsEuSymbiontAssociated
    inlined: true
    inlined_as_list: true
  migs_eu_wastewater_sludge_data:
    description: Data that comply with MigsEu combined with WastewaterSludge
    title: MigsEuWastewaterSludge data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_wastewater_sludge_data
    multivalued: true
    range: MigsEuWastewaterSludge
    inlined: true
    inlined_as_list: true
  migs_eu_water_data:
    description: Data that comply with MigsEu combined with Water
    title: MigsEuWater data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_eu_water_data
    multivalued: true
    range: MigsEuWater
    inlined: true
    inlined_as_list: true
  migs_org_data:
    description: Data that comply with checklist MigsOrg
    title: MigsOrg data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_data
    multivalued: true
    range: MigsOrg
    inlined: true
    inlined_as_list: true
  migs_org_agriculture_data:
    description: Data that comply with MigsOrg combined with Agriculture
    title: MigsOrgAgriculture data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_agriculture_data
    multivalued: true
    range: MigsOrgAgriculture
    inlined: true
    inlined_as_list: true
  migs_org_air_data:
    description: Data that comply with MigsOrg combined with Air
    title: MigsOrgAir data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_air_data
    multivalued: true
    range: MigsOrgAir
    inlined: true
    inlined_as_list: true
  migs_org_built_environment_data:
    description: Data that comply with MigsOrg combined with BuiltEnvironment
    title: MigsOrgBuiltEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_built_environment_data
    multivalued: true
    range: MigsOrgBuiltEnvironment
    inlined: true
    inlined_as_list: true
  migs_org_food_animal_and_animal_feed_data:
    description: Data that comply with MigsOrg combined with FoodAnimalAndAnimalFeed
    title: MigsOrgFoodAnimalAndAnimalFeed data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_food_animal_and_animal_feed_data
    multivalued: true
    range: MigsOrgFoodAnimalAndAnimalFeed
    inlined: true
    inlined_as_list: true
  migs_org_food_farm_environment_data:
    description: Data that comply with MigsOrg combined with FoodFarmEnvironment
    title: MigsOrgFoodFarmEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_food_farm_environment_data
    multivalued: true
    range: MigsOrgFoodFarmEnvironment
    inlined: true
    inlined_as_list: true
  migs_org_food_food_production_facility_data:
    description: Data that comply with MigsOrg combined with FoodFoodProductionFacility
    title: MigsOrgFoodFoodProductionFacility data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_food_food_production_facility_data
    multivalued: true
    range: MigsOrgFoodFoodProductionFacility
    inlined: true
    inlined_as_list: true
  migs_org_food_human_foods_data:
    description: Data that comply with MigsOrg combined with FoodHumanFoods
    title: MigsOrgFoodHumanFoods data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_food_human_foods_data
    multivalued: true
    range: MigsOrgFoodHumanFoods
    inlined: true
    inlined_as_list: true
  migs_org_host_associated_data:
    description: Data that comply with MigsOrg combined with HostAssociated
    title: MigsOrgHostAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_host_associated_data
    multivalued: true
    range: MigsOrgHostAssociated
    inlined: true
    inlined_as_list: true
  migs_org_human_associated_data:
    description: Data that comply with MigsOrg combined with HumanAssociated
    title: MigsOrgHumanAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_human_associated_data
    multivalued: true
    range: MigsOrgHumanAssociated
    inlined: true
    inlined_as_list: true
  migs_org_human_gut_data:
    description: Data that comply with MigsOrg combined with HumanGut
    title: MigsOrgHumanGut data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_human_gut_data
    multivalued: true
    range: MigsOrgHumanGut
    inlined: true
    inlined_as_list: true
  migs_org_human_oral_data:
    description: Data that comply with MigsOrg combined with HumanOral
    title: MigsOrgHumanOral data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_human_oral_data
    multivalued: true
    range: MigsOrgHumanOral
    inlined: true
    inlined_as_list: true
  migs_org_human_skin_data:
    description: Data that comply with MigsOrg combined with HumanSkin
    title: MigsOrgHumanSkin data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_human_skin_data
    multivalued: true
    range: MigsOrgHumanSkin
    inlined: true
    inlined_as_list: true
  migs_org_human_vaginal_data:
    description: Data that comply with MigsOrg combined with HumanVaginal
    title: MigsOrgHumanVaginal data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_human_vaginal_data
    multivalued: true
    range: MigsOrgHumanVaginal
    inlined: true
    inlined_as_list: true
  migs_org_hydrocarbon_resources_cores_data:
    description: Data that comply with MigsOrg combined with HydrocarbonResourcesCores
    title: MigsOrgHydrocarbonResourcesCores data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_hydrocarbon_resources_cores_data
    multivalued: true
    range: MigsOrgHydrocarbonResourcesCores
    inlined: true
    inlined_as_list: true
  migs_org_hydrocarbon_resources_fluids_swabs_data:
    description: Data that comply with MigsOrg combined with HydrocarbonResourcesFluidsSwabs
    title: MigsOrgHydrocarbonResourcesFluidsSwabs data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_hydrocarbon_resources_fluids_swabs_data
    multivalued: true
    range: MigsOrgHydrocarbonResourcesFluidsSwabs
    inlined: true
    inlined_as_list: true
  migs_org_microbial_mat_biofilm_data:
    description: Data that comply with MigsOrg combined with MicrobialMatBiofilm
    title: MigsOrgMicrobialMatBiofilm data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_microbial_mat_biofilm_data
    multivalued: true
    range: MigsOrgMicrobialMatBiofilm
    inlined: true
    inlined_as_list: true
  migs_org_miscellaneous_natural_or_artificial_environment_data:
    description: Data that comply with MigsOrg combined with MiscellaneousNaturalOrArtificialEnvironment
    title: MigsOrgMiscellaneousNaturalOrArtificialEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_miscellaneous_natural_or_artificial_environment_data
    multivalued: true
    range: MigsOrgMiscellaneousNaturalOrArtificialEnvironment
    inlined: true
    inlined_as_list: true
  migs_org_plant_associated_data:
    description: Data that comply with MigsOrg combined with PlantAssociated
    title: MigsOrgPlantAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_plant_associated_data
    multivalued: true
    range: MigsOrgPlantAssociated
    inlined: true
    inlined_as_list: true
  migs_org_sediment_data:
    description: Data that comply with MigsOrg combined with Sediment
    title: MigsOrgSediment data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_sediment_data
    multivalued: true
    range: MigsOrgSediment
    inlined: true
    inlined_as_list: true
  migs_org_soil_data:
    description: Data that comply with MigsOrg combined with Soil
    title: MigsOrgSoil data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_soil_data
    multivalued: true
    range: MigsOrgSoil
    inlined: true
    inlined_as_list: true
  migs_org_symbiont_associated_data:
    description: Data that comply with MigsOrg combined with SymbiontAssociated
    title: MigsOrgSymbiontAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_symbiont_associated_data
    multivalued: true
    range: MigsOrgSymbiontAssociated
    inlined: true
    inlined_as_list: true
  migs_org_wastewater_sludge_data:
    description: Data that comply with MigsOrg combined with WastewaterSludge
    title: MigsOrgWastewaterSludge data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_wastewater_sludge_data
    multivalued: true
    range: MigsOrgWastewaterSludge
    inlined: true
    inlined_as_list: true
  migs_org_water_data:
    description: Data that comply with MigsOrg combined with Water
    title: MigsOrgWater data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_org_water_data
    multivalued: true
    range: MigsOrgWater
    inlined: true
    inlined_as_list: true
  migs_pl_data:
    description: Data that comply with checklist MigsPl
    title: MigsPl data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_data
    multivalued: true
    range: MigsPl
    inlined: true
    inlined_as_list: true
  migs_pl_agriculture_data:
    description: Data that comply with MigsPl combined with Agriculture
    title: MigsPlAgriculture data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_agriculture_data
    multivalued: true
    range: MigsPlAgriculture
    inlined: true
    inlined_as_list: true
  migs_pl_air_data:
    description: Data that comply with MigsPl combined with Air
    title: MigsPlAir data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_air_data
    multivalued: true
    range: MigsPlAir
    inlined: true
    inlined_as_list: true
  migs_pl_built_environment_data:
    description: Data that comply with MigsPl combined with BuiltEnvironment
    title: MigsPlBuiltEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_built_environment_data
    multivalued: true
    range: MigsPlBuiltEnvironment
    inlined: true
    inlined_as_list: true
  migs_pl_food_animal_and_animal_feed_data:
    description: Data that comply with MigsPl combined with FoodAnimalAndAnimalFeed
    title: MigsPlFoodAnimalAndAnimalFeed data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_food_animal_and_animal_feed_data
    multivalued: true
    range: MigsPlFoodAnimalAndAnimalFeed
    inlined: true
    inlined_as_list: true
  migs_pl_food_farm_environment_data:
    description: Data that comply with MigsPl combined with FoodFarmEnvironment
    title: MigsPlFoodFarmEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_food_farm_environment_data
    multivalued: true
    range: MigsPlFoodFarmEnvironment
    inlined: true
    inlined_as_list: true
  migs_pl_food_food_production_facility_data:
    description: Data that comply with MigsPl combined with FoodFoodProductionFacility
    title: MigsPlFoodFoodProductionFacility data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_food_food_production_facility_data
    multivalued: true
    range: MigsPlFoodFoodProductionFacility
    inlined: true
    inlined_as_list: true
  migs_pl_food_human_foods_data:
    description: Data that comply with MigsPl combined with FoodHumanFoods
    title: MigsPlFoodHumanFoods data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_food_human_foods_data
    multivalued: true
    range: MigsPlFoodHumanFoods
    inlined: true
    inlined_as_list: true
  migs_pl_host_associated_data:
    description: Data that comply with MigsPl combined with HostAssociated
    title: MigsPlHostAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_host_associated_data
    multivalued: true
    range: MigsPlHostAssociated
    inlined: true
    inlined_as_list: true
  migs_pl_human_associated_data:
    description: Data that comply with MigsPl combined with HumanAssociated
    title: MigsPlHumanAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_human_associated_data
    multivalued: true
    range: MigsPlHumanAssociated
    inlined: true
    inlined_as_list: true
  migs_pl_human_gut_data:
    description: Data that comply with MigsPl combined with HumanGut
    title: MigsPlHumanGut data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_human_gut_data
    multivalued: true
    range: MigsPlHumanGut
    inlined: true
    inlined_as_list: true
  migs_pl_human_oral_data:
    description: Data that comply with MigsPl combined with HumanOral
    title: MigsPlHumanOral data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_human_oral_data
    multivalued: true
    range: MigsPlHumanOral
    inlined: true
    inlined_as_list: true
  migs_pl_human_skin_data:
    description: Data that comply with MigsPl combined with HumanSkin
    title: MigsPlHumanSkin data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_human_skin_data
    multivalued: true
    range: MigsPlHumanSkin
    inlined: true
    inlined_as_list: true
  migs_pl_human_vaginal_data:
    description: Data that comply with MigsPl combined with HumanVaginal
    title: MigsPlHumanVaginal data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_human_vaginal_data
    multivalued: true
    range: MigsPlHumanVaginal
    inlined: true
    inlined_as_list: true
  migs_pl_hydrocarbon_resources_cores_data:
    description: Data that comply with MigsPl combined with HydrocarbonResourcesCores
    title: MigsPlHydrocarbonResourcesCores data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_hydrocarbon_resources_cores_data
    multivalued: true
    range: MigsPlHydrocarbonResourcesCores
    inlined: true
    inlined_as_list: true
  migs_pl_hydrocarbon_resources_fluids_swabs_data:
    description: Data that comply with MigsPl combined with HydrocarbonResourcesFluidsSwabs
    title: MigsPlHydrocarbonResourcesFluidsSwabs data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_hydrocarbon_resources_fluids_swabs_data
    multivalued: true
    range: MigsPlHydrocarbonResourcesFluidsSwabs
    inlined: true
    inlined_as_list: true
  migs_pl_microbial_mat_biofilm_data:
    description: Data that comply with MigsPl combined with MicrobialMatBiofilm
    title: MigsPlMicrobialMatBiofilm data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_microbial_mat_biofilm_data
    multivalued: true
    range: MigsPlMicrobialMatBiofilm
    inlined: true
    inlined_as_list: true
  migs_pl_miscellaneous_natural_or_artificial_environment_data:
    description: Data that comply with MigsPl combined with MiscellaneousNaturalOrArtificialEnvironment
    title: MigsPlMiscellaneousNaturalOrArtificialEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_miscellaneous_natural_or_artificial_environment_data
    multivalued: true
    range: MigsPlMiscellaneousNaturalOrArtificialEnvironment
    inlined: true
    inlined_as_list: true
  migs_pl_plant_associated_data:
    description: Data that comply with MigsPl combined with PlantAssociated
    title: MigsPlPlantAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_plant_associated_data
    multivalued: true
    range: MigsPlPlantAssociated
    inlined: true
    inlined_as_list: true
  migs_pl_sediment_data:
    description: Data that comply with MigsPl combined with Sediment
    title: MigsPlSediment data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_sediment_data
    multivalued: true
    range: MigsPlSediment
    inlined: true
    inlined_as_list: true
  migs_pl_soil_data:
    description: Data that comply with MigsPl combined with Soil
    title: MigsPlSoil data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_soil_data
    multivalued: true
    range: MigsPlSoil
    inlined: true
    inlined_as_list: true
  migs_pl_symbiont_associated_data:
    description: Data that comply with MigsPl combined with SymbiontAssociated
    title: MigsPlSymbiontAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_symbiont_associated_data
    multivalued: true
    range: MigsPlSymbiontAssociated
    inlined: true
    inlined_as_list: true
  migs_pl_wastewater_sludge_data:
    description: Data that comply with MigsPl combined with WastewaterSludge
    title: MigsPlWastewaterSludge data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_wastewater_sludge_data
    multivalued: true
    range: MigsPlWastewaterSludge
    inlined: true
    inlined_as_list: true
  migs_pl_water_data:
    description: Data that comply with MigsPl combined with Water
    title: MigsPlWater data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_pl_water_data
    multivalued: true
    range: MigsPlWater
    inlined: true
    inlined_as_list: true
  migs_vi_data:
    description: Data that comply with checklist MigsVi
    title: MigsVi data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_data
    multivalued: true
    range: MigsVi
    inlined: true
    inlined_as_list: true
  migs_vi_agriculture_data:
    description: Data that comply with MigsVi combined with Agriculture
    title: MigsViAgriculture data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_agriculture_data
    multivalued: true
    range: MigsViAgriculture
    inlined: true
    inlined_as_list: true
  migs_vi_air_data:
    description: Data that comply with MigsVi combined with Air
    title: MigsViAir data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_air_data
    multivalued: true
    range: MigsViAir
    inlined: true
    inlined_as_list: true
  migs_vi_built_environment_data:
    description: Data that comply with MigsVi combined with BuiltEnvironment
    title: MigsViBuiltEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_built_environment_data
    multivalued: true
    range: MigsViBuiltEnvironment
    inlined: true
    inlined_as_list: true
  migs_vi_food_animal_and_animal_feed_data:
    description: Data that comply with MigsVi combined with FoodAnimalAndAnimalFeed
    title: MigsViFoodAnimalAndAnimalFeed data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_food_animal_and_animal_feed_data
    multivalued: true
    range: MigsViFoodAnimalAndAnimalFeed
    inlined: true
    inlined_as_list: true
  migs_vi_food_farm_environment_data:
    description: Data that comply with MigsVi combined with FoodFarmEnvironment
    title: MigsViFoodFarmEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_food_farm_environment_data
    multivalued: true
    range: MigsViFoodFarmEnvironment
    inlined: true
    inlined_as_list: true
  migs_vi_food_food_production_facility_data:
    description: Data that comply with MigsVi combined with FoodFoodProductionFacility
    title: MigsViFoodFoodProductionFacility data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_food_food_production_facility_data
    multivalued: true
    range: MigsViFoodFoodProductionFacility
    inlined: true
    inlined_as_list: true
  migs_vi_food_human_foods_data:
    description: Data that comply with MigsVi combined with FoodHumanFoods
    title: MigsViFoodHumanFoods data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_food_human_foods_data
    multivalued: true
    range: MigsViFoodHumanFoods
    inlined: true
    inlined_as_list: true
  migs_vi_host_associated_data:
    description: Data that comply with MigsVi combined with HostAssociated
    title: MigsViHostAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_host_associated_data
    multivalued: true
    range: MigsViHostAssociated
    inlined: true
    inlined_as_list: true
  migs_vi_human_associated_data:
    description: Data that comply with MigsVi combined with HumanAssociated
    title: MigsViHumanAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_human_associated_data
    multivalued: true
    range: MigsViHumanAssociated
    inlined: true
    inlined_as_list: true
  migs_vi_human_gut_data:
    description: Data that comply with MigsVi combined with HumanGut
    title: MigsViHumanGut data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_human_gut_data
    multivalued: true
    range: MigsViHumanGut
    inlined: true
    inlined_as_list: true
  migs_vi_human_oral_data:
    description: Data that comply with MigsVi combined with HumanOral
    title: MigsViHumanOral data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_human_oral_data
    multivalued: true
    range: MigsViHumanOral
    inlined: true
    inlined_as_list: true
  migs_vi_human_skin_data:
    description: Data that comply with MigsVi combined with HumanSkin
    title: MigsViHumanSkin data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_human_skin_data
    multivalued: true
    range: MigsViHumanSkin
    inlined: true
    inlined_as_list: true
  migs_vi_human_vaginal_data:
    description: Data that comply with MigsVi combined with HumanVaginal
    title: MigsViHumanVaginal data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_human_vaginal_data
    multivalued: true
    range: MigsViHumanVaginal
    inlined: true
    inlined_as_list: true
  migs_vi_hydrocarbon_resources_cores_data:
    description: Data that comply with MigsVi combined with HydrocarbonResourcesCores
    title: MigsViHydrocarbonResourcesCores data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_hydrocarbon_resources_cores_data
    multivalued: true
    range: MigsViHydrocarbonResourcesCores
    inlined: true
    inlined_as_list: true
  migs_vi_hydrocarbon_resources_fluids_swabs_data:
    description: Data that comply with MigsVi combined with HydrocarbonResourcesFluidsSwabs
    title: MigsViHydrocarbonResourcesFluidsSwabs data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_hydrocarbon_resources_fluids_swabs_data
    multivalued: true
    range: MigsViHydrocarbonResourcesFluidsSwabs
    inlined: true
    inlined_as_list: true
  migs_vi_microbial_mat_biofilm_data:
    description: Data that comply with MigsVi combined with MicrobialMatBiofilm
    title: MigsViMicrobialMatBiofilm data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_microbial_mat_biofilm_data
    multivalued: true
    range: MigsViMicrobialMatBiofilm
    inlined: true
    inlined_as_list: true
  migs_vi_miscellaneous_natural_or_artificial_environment_data:
    description: Data that comply with MigsVi combined with MiscellaneousNaturalOrArtificialEnvironment
    title: MigsViMiscellaneousNaturalOrArtificialEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_miscellaneous_natural_or_artificial_environment_data
    multivalued: true
    range: MigsViMiscellaneousNaturalOrArtificialEnvironment
    inlined: true
    inlined_as_list: true
  migs_vi_plant_associated_data:
    description: Data that comply with MigsVi combined with PlantAssociated
    title: MigsViPlantAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_plant_associated_data
    multivalued: true
    range: MigsViPlantAssociated
    inlined: true
    inlined_as_list: true
  migs_vi_sediment_data:
    description: Data that comply with MigsVi combined with Sediment
    title: MigsViSediment data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_sediment_data
    multivalued: true
    range: MigsViSediment
    inlined: true
    inlined_as_list: true
  migs_vi_soil_data:
    description: Data that comply with MigsVi combined with Soil
    title: MigsViSoil data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_soil_data
    multivalued: true
    range: MigsViSoil
    inlined: true
    inlined_as_list: true
  migs_vi_symbiont_associated_data:
    description: Data that comply with MigsVi combined with SymbiontAssociated
    title: MigsViSymbiontAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_symbiont_associated_data
    multivalued: true
    range: MigsViSymbiontAssociated
    inlined: true
    inlined_as_list: true
  migs_vi_wastewater_sludge_data:
    description: Data that comply with MigsVi combined with WastewaterSludge
    title: MigsViWastewaterSludge data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_wastewater_sludge_data
    multivalued: true
    range: MigsViWastewaterSludge
    inlined: true
    inlined_as_list: true
  migs_vi_water_data:
    description: Data that comply with MigsVi combined with Water
    title: MigsViWater data
    domain: MixsCompliantData
    slot_uri: MIXS:migs_vi_water_data
    multivalued: true
    range: MigsViWater
    inlined: true
    inlined_as_list: true
  mimag_data:
    description: Data that comply with checklist Mimag
    title: Mimag data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_data
    multivalued: true
    range: Mimag
    inlined: true
    inlined_as_list: true
  mimag_agriculture_data:
    description: Data that comply with Mimag combined with Agriculture
    title: MimagAgriculture data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_agriculture_data
    multivalued: true
    range: MimagAgriculture
    inlined: true
    inlined_as_list: true
  mimag_air_data:
    description: Data that comply with Mimag combined with Air
    title: MimagAir data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_air_data
    multivalued: true
    range: MimagAir
    inlined: true
    inlined_as_list: true
  mimag_built_environment_data:
    description: Data that comply with Mimag combined with BuiltEnvironment
    title: MimagBuiltEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_built_environment_data
    multivalued: true
    range: MimagBuiltEnvironment
    inlined: true
    inlined_as_list: true
  mimag_food_animal_and_animal_feed_data:
    description: Data that comply with Mimag combined with FoodAnimalAndAnimalFeed
    title: MimagFoodAnimalAndAnimalFeed data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_food_animal_and_animal_feed_data
    multivalued: true
    range: MimagFoodAnimalAndAnimalFeed
    inlined: true
    inlined_as_list: true
  mimag_food_farm_environment_data:
    description: Data that comply with Mimag combined with FoodFarmEnvironment
    title: MimagFoodFarmEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_food_farm_environment_data
    multivalued: true
    range: MimagFoodFarmEnvironment
    inlined: true
    inlined_as_list: true
  mimag_food_food_production_facility_data:
    description: Data that comply with Mimag combined with FoodFoodProductionFacility
    title: MimagFoodFoodProductionFacility data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_food_food_production_facility_data
    multivalued: true
    range: MimagFoodFoodProductionFacility
    inlined: true
    inlined_as_list: true
  mimag_food_human_foods_data:
    description: Data that comply with Mimag combined with FoodHumanFoods
    title: MimagFoodHumanFoods data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_food_human_foods_data
    multivalued: true
    range: MimagFoodHumanFoods
    inlined: true
    inlined_as_list: true
  mimag_host_associated_data:
    description: Data that comply with Mimag combined with HostAssociated
    title: MimagHostAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_host_associated_data
    multivalued: true
    range: MimagHostAssociated
    inlined: true
    inlined_as_list: true
  mimag_human_associated_data:
    description: Data that comply with Mimag combined with HumanAssociated
    title: MimagHumanAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_human_associated_data
    multivalued: true
    range: MimagHumanAssociated
    inlined: true
    inlined_as_list: true
  mimag_human_gut_data:
    description: Data that comply with Mimag combined with HumanGut
    title: MimagHumanGut data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_human_gut_data
    multivalued: true
    range: MimagHumanGut
    inlined: true
    inlined_as_list: true
  mimag_human_oral_data:
    description: Data that comply with Mimag combined with HumanOral
    title: MimagHumanOral data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_human_oral_data
    multivalued: true
    range: MimagHumanOral
    inlined: true
    inlined_as_list: true
  mimag_human_skin_data:
    description: Data that comply with Mimag combined with HumanSkin
    title: MimagHumanSkin data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_human_skin_data
    multivalued: true
    range: MimagHumanSkin
    inlined: true
    inlined_as_list: true
  mimag_human_vaginal_data:
    description: Data that comply with Mimag combined with HumanVaginal
    title: MimagHumanVaginal data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_human_vaginal_data
    multivalued: true
    range: MimagHumanVaginal
    inlined: true
    inlined_as_list: true
  mimag_hydrocarbon_resources_cores_data:
    description: Data that comply with Mimag combined with HydrocarbonResourcesCores
    title: MimagHydrocarbonResourcesCores data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_hydrocarbon_resources_cores_data
    multivalued: true
    range: MimagHydrocarbonResourcesCores
    inlined: true
    inlined_as_list: true
  mimag_hydrocarbon_resources_fluids_swabs_data:
    description: Data that comply with Mimag combined with HydrocarbonResourcesFluidsSwabs
    title: MimagHydrocarbonResourcesFluidsSwabs data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_hydrocarbon_resources_fluids_swabs_data
    multivalued: true
    range: MimagHydrocarbonResourcesFluidsSwabs
    inlined: true
    inlined_as_list: true
  mimag_microbial_mat_biofilm_data:
    description: Data that comply with Mimag combined with MicrobialMatBiofilm
    title: MimagMicrobialMatBiofilm data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_microbial_mat_biofilm_data
    multivalued: true
    range: MimagMicrobialMatBiofilm
    inlined: true
    inlined_as_list: true
  mimag_miscellaneous_natural_or_artificial_environment_data:
    description: Data that comply with Mimag combined with MiscellaneousNaturalOrArtificialEnvironment
    title: MimagMiscellaneousNaturalOrArtificialEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_miscellaneous_natural_or_artificial_environment_data
    multivalued: true
    range: MimagMiscellaneousNaturalOrArtificialEnvironment
    inlined: true
    inlined_as_list: true
  mimag_plant_associated_data:
    description: Data that comply with Mimag combined with PlantAssociated
    title: MimagPlantAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_plant_associated_data
    multivalued: true
    range: MimagPlantAssociated
    inlined: true
    inlined_as_list: true
  mimag_sediment_data:
    description: Data that comply with Mimag combined with Sediment
    title: MimagSediment data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_sediment_data
    multivalued: true
    range: MimagSediment
    inlined: true
    inlined_as_list: true
  mimag_soil_data:
    description: Data that comply with Mimag combined with Soil
    title: MimagSoil data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_soil_data
    multivalued: true
    range: MimagSoil
    inlined: true
    inlined_as_list: true
  mimag_symbiont_associated_data:
    description: Data that comply with Mimag combined with SymbiontAssociated
    title: MimagSymbiontAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_symbiont_associated_data
    multivalued: true
    range: MimagSymbiontAssociated
    inlined: true
    inlined_as_list: true
  mimag_wastewater_sludge_data:
    description: Data that comply with Mimag combined with WastewaterSludge
    title: MimagWastewaterSludge data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_wastewater_sludge_data
    multivalued: true
    range: MimagWastewaterSludge
    inlined: true
    inlined_as_list: true
  mimag_water_data:
    description: Data that comply with Mimag combined with Water
    title: MimagWater data
    domain: MixsCompliantData
    slot_uri: MIXS:mimag_water_data
    multivalued: true
    range: MimagWater
    inlined: true
    inlined_as_list: true
  mimarks_c_data:
    description: Data that comply with checklist MimarksC
    title: MimarksC data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_data
    multivalued: true
    range: MimarksC
    inlined: true
    inlined_as_list: true
  mimarks_c_agriculture_data:
    description: Data that comply with MimarksC combined with Agriculture
    title: MimarksCAgriculture data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_agriculture_data
    multivalued: true
    range: MimarksCAgriculture
    inlined: true
    inlined_as_list: true
  mimarks_c_air_data:
    description: Data that comply with MimarksC combined with Air
    title: MimarksCAir data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_air_data
    multivalued: true
    range: MimarksCAir
    inlined: true
    inlined_as_list: true
  mimarks_c_built_environment_data:
    description: Data that comply with MimarksC combined with BuiltEnvironment
    title: MimarksCBuiltEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_built_environment_data
    multivalued: true
    range: MimarksCBuiltEnvironment
    inlined: true
    inlined_as_list: true
  mimarks_c_food_animal_and_animal_feed_data:
    description: Data that comply with MimarksC combined with FoodAnimalAndAnimalFeed
    title: MimarksCFoodAnimalAndAnimalFeed data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_food_animal_and_animal_feed_data
    multivalued: true
    range: MimarksCFoodAnimalAndAnimalFeed
    inlined: true
    inlined_as_list: true
  mimarks_c_food_farm_environment_data:
    description: Data that comply with MimarksC combined with FoodFarmEnvironment
    title: MimarksCFoodFarmEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_food_farm_environment_data
    multivalued: true
    range: MimarksCFoodFarmEnvironment
    inlined: true
    inlined_as_list: true
  mimarks_c_food_food_production_facility_data:
    description: Data that comply with MimarksC combined with FoodFoodProductionFacility
    title: MimarksCFoodFoodProductionFacility data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_food_food_production_facility_data
    multivalued: true
    range: MimarksCFoodFoodProductionFacility
    inlined: true
    inlined_as_list: true
  mimarks_c_food_human_foods_data:
    description: Data that comply with MimarksC combined with FoodHumanFoods
    title: MimarksCFoodHumanFoods data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_food_human_foods_data
    multivalued: true
    range: MimarksCFoodHumanFoods
    inlined: true
    inlined_as_list: true
  mimarks_c_host_associated_data:
    description: Data that comply with MimarksC combined with HostAssociated
    title: MimarksCHostAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_host_associated_data
    multivalued: true
    range: MimarksCHostAssociated
    inlined: true
    inlined_as_list: true
  mimarks_c_human_associated_data:
    description: Data that comply with MimarksC combined with HumanAssociated
    title: MimarksCHumanAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_human_associated_data
    multivalued: true
    range: MimarksCHumanAssociated
    inlined: true
    inlined_as_list: true
  mimarks_c_human_gut_data:
    description: Data that comply with MimarksC combined with HumanGut
    title: MimarksCHumanGut data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_human_gut_data
    multivalued: true
    range: MimarksCHumanGut
    inlined: true
    inlined_as_list: true
  mimarks_c_human_oral_data:
    description: Data that comply with MimarksC combined with HumanOral
    title: MimarksCHumanOral data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_human_oral_data
    multivalued: true
    range: MimarksCHumanOral
    inlined: true
    inlined_as_list: true
  mimarks_c_human_skin_data:
    description: Data that comply with MimarksC combined with HumanSkin
    title: MimarksCHumanSkin data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_human_skin_data
    multivalued: true
    range: MimarksCHumanSkin
    inlined: true
    inlined_as_list: true
  mimarks_c_human_vaginal_data:
    description: Data that comply with MimarksC combined with HumanVaginal
    title: MimarksCHumanVaginal data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_human_vaginal_data
    multivalued: true
    range: MimarksCHumanVaginal
    inlined: true
    inlined_as_list: true
  mimarks_c_hydrocarbon_resources_cores_data:
    description: Data that comply with MimarksC combined with HydrocarbonResourcesCores
    title: MimarksCHydrocarbonResourcesCores data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_hydrocarbon_resources_cores_data
    multivalued: true
    range: MimarksCHydrocarbonResourcesCores
    inlined: true
    inlined_as_list: true
  mimarks_c_hydrocarbon_resources_fluids_swabs_data:
    description: Data that comply with MimarksC combined with HydrocarbonResourcesFluidsSwabs
    title: MimarksCHydrocarbonResourcesFluidsSwabs data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_hydrocarbon_resources_fluids_swabs_data
    multivalued: true
    range: MimarksCHydrocarbonResourcesFluidsSwabs
    inlined: true
    inlined_as_list: true
  mimarks_c_microbial_mat_biofilm_data:
    description: Data that comply with MimarksC combined with MicrobialMatBiofilm
    title: MimarksCMicrobialMatBiofilm data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_microbial_mat_biofilm_data
    multivalued: true
    range: MimarksCMicrobialMatBiofilm
    inlined: true
    inlined_as_list: true
  mimarks_c_miscellaneous_natural_or_artificial_environment_data:
    description: Data that comply with MimarksC combined with MiscellaneousNaturalOrArtificialEnvironment
    title: MimarksCMiscellaneousNaturalOrArtificialEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_miscellaneous_natural_or_artificial_environment_data
    multivalued: true
    range: MimarksCMiscellaneousNaturalOrArtificialEnvironment
    inlined: true
    inlined_as_list: true
  mimarks_c_plant_associated_data:
    description: Data that comply with MimarksC combined with PlantAssociated
    title: MimarksCPlantAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_plant_associated_data
    multivalued: true
    range: MimarksCPlantAssociated
    inlined: true
    inlined_as_list: true
  mimarks_c_sediment_data:
    description: Data that comply with MimarksC combined with Sediment
    title: MimarksCSediment data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_sediment_data
    multivalued: true
    range: MimarksCSediment
    inlined: true
    inlined_as_list: true
  mimarks_c_soil_data:
    description: Data that comply with MimarksC combined with Soil
    title: MimarksCSoil data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_soil_data
    multivalued: true
    range: MimarksCSoil
    inlined: true
    inlined_as_list: true
  mimarks_c_symbiont_associated_data:
    description: Data that comply with MimarksC combined with SymbiontAssociated
    title: MimarksCSymbiontAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_symbiont_associated_data
    multivalued: true
    range: MimarksCSymbiontAssociated
    inlined: true
    inlined_as_list: true
  mimarks_c_wastewater_sludge_data:
    description: Data that comply with MimarksC combined with WastewaterSludge
    title: MimarksCWastewaterSludge data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_wastewater_sludge_data
    multivalued: true
    range: MimarksCWastewaterSludge
    inlined: true
    inlined_as_list: true
  mimarks_c_water_data:
    description: Data that comply with MimarksC combined with Water
    title: MimarksCWater data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_c_water_data
    multivalued: true
    range: MimarksCWater
    inlined: true
    inlined_as_list: true
  mimarks_s_data:
    description: Data that comply with checklist MimarksS
    title: MimarksS data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_data
    multivalued: true
    range: MimarksS
    inlined: true
    inlined_as_list: true
  mimarks_s_agriculture_data:
    description: Data that comply with MimarksS combined with Agriculture
    title: MimarksSAgriculture data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_agriculture_data
    multivalued: true
    range: MimarksSAgriculture
    inlined: true
    inlined_as_list: true
  mimarks_s_air_data:
    description: Data that comply with MimarksS combined with Air
    title: MimarksSAir data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_air_data
    multivalued: true
    range: MimarksSAir
    inlined: true
    inlined_as_list: true
  mimarks_s_built_environment_data:
    description: Data that comply with MimarksS combined with BuiltEnvironment
    title: MimarksSBuiltEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_built_environment_data
    multivalued: true
    range: MimarksSBuiltEnvironment
    inlined: true
    inlined_as_list: true
  mimarks_s_food_animal_and_animal_feed_data:
    description: Data that comply with MimarksS combined with FoodAnimalAndAnimalFeed
    title: MimarksSFoodAnimalAndAnimalFeed data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_food_animal_and_animal_feed_data
    multivalued: true
    range: MimarksSFoodAnimalAndAnimalFeed
    inlined: true
    inlined_as_list: true
  mimarks_s_food_farm_environment_data:
    description: Data that comply with MimarksS combined with FoodFarmEnvironment
    title: MimarksSFoodFarmEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_food_farm_environment_data
    multivalued: true
    range: MimarksSFoodFarmEnvironment
    inlined: true
    inlined_as_list: true
  mimarks_s_food_food_production_facility_data:
    description: Data that comply with MimarksS combined with FoodFoodProductionFacility
    title: MimarksSFoodFoodProductionFacility data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_food_food_production_facility_data
    multivalued: true
    range: MimarksSFoodFoodProductionFacility
    inlined: true
    inlined_as_list: true
  mimarks_s_food_human_foods_data:
    description: Data that comply with MimarksS combined with FoodHumanFoods
    title: MimarksSFoodHumanFoods data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_food_human_foods_data
    multivalued: true
    range: MimarksSFoodHumanFoods
    inlined: true
    inlined_as_list: true
  mimarks_s_host_associated_data:
    description: Data that comply with MimarksS combined with HostAssociated
    title: MimarksSHostAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_host_associated_data
    multivalued: true
    range: MimarksSHostAssociated
    inlined: true
    inlined_as_list: true
  mimarks_s_human_associated_data:
    description: Data that comply with MimarksS combined with HumanAssociated
    title: MimarksSHumanAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_human_associated_data
    multivalued: true
    range: MimarksSHumanAssociated
    inlined: true
    inlined_as_list: true
  mimarks_s_human_gut_data:
    description: Data that comply with MimarksS combined with HumanGut
    title: MimarksSHumanGut data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_human_gut_data
    multivalued: true
    range: MimarksSHumanGut
    inlined: true
    inlined_as_list: true
  mimarks_s_human_oral_data:
    description: Data that comply with MimarksS combined with HumanOral
    title: MimarksSHumanOral data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_human_oral_data
    multivalued: true
    range: MimarksSHumanOral
    inlined: true
    inlined_as_list: true
  mimarks_s_human_skin_data:
    description: Data that comply with MimarksS combined with HumanSkin
    title: MimarksSHumanSkin data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_human_skin_data
    multivalued: true
    range: MimarksSHumanSkin
    inlined: true
    inlined_as_list: true
  mimarks_s_human_vaginal_data:
    description: Data that comply with MimarksS combined with HumanVaginal
    title: MimarksSHumanVaginal data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_human_vaginal_data
    multivalued: true
    range: MimarksSHumanVaginal
    inlined: true
    inlined_as_list: true
  mimarks_s_hydrocarbon_resources_cores_data:
    description: Data that comply with MimarksS combined with HydrocarbonResourcesCores
    title: MimarksSHydrocarbonResourcesCores data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_hydrocarbon_resources_cores_data
    multivalued: true
    range: MimarksSHydrocarbonResourcesCores
    inlined: true
    inlined_as_list: true
  mimarks_s_hydrocarbon_resources_fluids_swabs_data:
    description: Data that comply with MimarksS combined with HydrocarbonResourcesFluidsSwabs
    title: MimarksSHydrocarbonResourcesFluidsSwabs data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_hydrocarbon_resources_fluids_swabs_data
    multivalued: true
    range: MimarksSHydrocarbonResourcesFluidsSwabs
    inlined: true
    inlined_as_list: true
  mimarks_s_microbial_mat_biofilm_data:
    description: Data that comply with MimarksS combined with MicrobialMatBiofilm
    title: MimarksSMicrobialMatBiofilm data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_microbial_mat_biofilm_data
    multivalued: true
    range: MimarksSMicrobialMatBiofilm
    inlined: true
    inlined_as_list: true
  mimarks_s_miscellaneous_natural_or_artificial_environment_data:
    description: Data that comply with MimarksS combined with MiscellaneousNaturalOrArtificialEnvironment
    title: MimarksSMiscellaneousNaturalOrArtificialEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_miscellaneous_natural_or_artificial_environment_data
    multivalued: true
    range: MimarksSMiscellaneousNaturalOrArtificialEnvironment
    inlined: true
    inlined_as_list: true
  mimarks_s_plant_associated_data:
    description: Data that comply with MimarksS combined with PlantAssociated
    title: MimarksSPlantAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_plant_associated_data
    multivalued: true
    range: MimarksSPlantAssociated
    inlined: true
    inlined_as_list: true
  mimarks_s_sediment_data:
    description: Data that comply with MimarksS combined with Sediment
    title: MimarksSSediment data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_sediment_data
    multivalued: true
    range: MimarksSSediment
    inlined: true
    inlined_as_list: true
  mimarks_s_soil_data:
    description: Data that comply with MimarksS combined with Soil
    title: MimarksSSoil data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_soil_data
    multivalued: true
    range: MimarksSSoil
    inlined: true
    inlined_as_list: true
  mimarks_s_symbiont_associated_data:
    description: Data that comply with MimarksS combined with SymbiontAssociated
    title: MimarksSSymbiontAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_symbiont_associated_data
    multivalued: true
    range: MimarksSSymbiontAssociated
    inlined: true
    inlined_as_list: true
  mimarks_s_wastewater_sludge_data:
    description: Data that comply with MimarksS combined with WastewaterSludge
    title: MimarksSWastewaterSludge data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_wastewater_sludge_data
    multivalued: true
    range: MimarksSWastewaterSludge
    inlined: true
    inlined_as_list: true
  mimarks_s_water_data:
    description: Data that comply with MimarksS combined with Water
    title: MimarksSWater data
    domain: MixsCompliantData
    slot_uri: MIXS:mimarks_s_water_data
    multivalued: true
    range: MimarksSWater
    inlined: true
    inlined_as_list: true
  mims_data:
    description: Data that comply with checklist Mims
    title: Mims data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_data
    multivalued: true
    range: Mims
    inlined: true
    inlined_as_list: true
  mims_agriculture_data:
    description: Data that comply with Mims combined with Agriculture
    title: MimsAgriculture data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_agriculture_data
    multivalued: true
    range: MimsAgriculture
    inlined: true
    inlined_as_list: true
  mims_air_data:
    description: Data that comply with Mims combined with Air
    title: MimsAir data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_air_data
    multivalued: true
    range: MimsAir
    inlined: true
    inlined_as_list: true
  mims_built_environment_data:
    description: Data that comply with Mims combined with BuiltEnvironment
    title: MimsBuiltEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_built_environment_data
    multivalued: true
    range: MimsBuiltEnvironment
    inlined: true
    inlined_as_list: true
  mims_food_animal_and_animal_feed_data:
    description: Data that comply with Mims combined with FoodAnimalAndAnimalFeed
    title: MimsFoodAnimalAndAnimalFeed data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_food_animal_and_animal_feed_data
    multivalued: true
    range: MimsFoodAnimalAndAnimalFeed
    inlined: true
    inlined_as_list: true
  mims_food_farm_environment_data:
    description: Data that comply with Mims combined with FoodFarmEnvironment
    title: MimsFoodFarmEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_food_farm_environment_data
    multivalued: true
    range: MimsFoodFarmEnvironment
    inlined: true
    inlined_as_list: true
  mims_food_food_production_facility_data:
    description: Data that comply with Mims combined with FoodFoodProductionFacility
    title: MimsFoodFoodProductionFacility data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_food_food_production_facility_data
    multivalued: true
    range: MimsFoodFoodProductionFacility
    inlined: true
    inlined_as_list: true
  mims_food_human_foods_data:
    description: Data that comply with Mims combined with FoodHumanFoods
    title: MimsFoodHumanFoods data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_food_human_foods_data
    multivalued: true
    range: MimsFoodHumanFoods
    inlined: true
    inlined_as_list: true
  mims_host_associated_data:
    description: Data that comply with Mims combined with HostAssociated
    title: MimsHostAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_host_associated_data
    multivalued: true
    range: MimsHostAssociated
    inlined: true
    inlined_as_list: true
  mims_human_associated_data:
    description: Data that comply with Mims combined with HumanAssociated
    title: MimsHumanAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_human_associated_data
    multivalued: true
    range: MimsHumanAssociated
    inlined: true
    inlined_as_list: true
  mims_human_gut_data:
    description: Data that comply with Mims combined with HumanGut
    title: MimsHumanGut data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_human_gut_data
    multivalued: true
    range: MimsHumanGut
    inlined: true
    inlined_as_list: true
  mims_human_oral_data:
    description: Data that comply with Mims combined with HumanOral
    title: MimsHumanOral data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_human_oral_data
    multivalued: true
    range: MimsHumanOral
    inlined: true
    inlined_as_list: true
  mims_human_skin_data:
    description: Data that comply with Mims combined with HumanSkin
    title: MimsHumanSkin data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_human_skin_data
    multivalued: true
    range: MimsHumanSkin
    inlined: true
    inlined_as_list: true
  mims_human_vaginal_data:
    description: Data that comply with Mims combined with HumanVaginal
    title: MimsHumanVaginal data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_human_vaginal_data
    multivalued: true
    range: MimsHumanVaginal
    inlined: true
    inlined_as_list: true
  mims_hydrocarbon_resources_cores_data:
    description: Data that comply with Mims combined with HydrocarbonResourcesCores
    title: MimsHydrocarbonResourcesCores data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_hydrocarbon_resources_cores_data
    multivalued: true
    range: MimsHydrocarbonResourcesCores
    inlined: true
    inlined_as_list: true
  mims_hydrocarbon_resources_fluids_swabs_data:
    description: Data that comply with Mims combined with HydrocarbonResourcesFluidsSwabs
    title: MimsHydrocarbonResourcesFluidsSwabs data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_hydrocarbon_resources_fluids_swabs_data
    multivalued: true
    range: MimsHydrocarbonResourcesFluidsSwabs
    inlined: true
    inlined_as_list: true
  mims_microbial_mat_biofilm_data:
    description: Data that comply with Mims combined with MicrobialMatBiofilm
    title: MimsMicrobialMatBiofilm data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_microbial_mat_biofilm_data
    multivalued: true
    range: MimsMicrobialMatBiofilm
    inlined: true
    inlined_as_list: true
  mims_miscellaneous_natural_or_artificial_environment_data:
    description: Data that comply with Mims combined with MiscellaneousNaturalOrArtificialEnvironment
    title: MimsMiscellaneousNaturalOrArtificialEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_miscellaneous_natural_or_artificial_environment_data
    multivalued: true
    range: MimsMiscellaneousNaturalOrArtificialEnvironment
    inlined: true
    inlined_as_list: true
  mims_plant_associated_data:
    description: Data that comply with Mims combined with PlantAssociated
    title: MimsPlantAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_plant_associated_data
    multivalued: true
    range: MimsPlantAssociated
    inlined: true
    inlined_as_list: true
  mims_sediment_data:
    description: Data that comply with Mims combined with Sediment
    title: MimsSediment data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_sediment_data
    multivalued: true
    range: MimsSediment
    inlined: true
    inlined_as_list: true
  mims_soil_data:
    description: Data that comply with Mims combined with Soil
    title: MimsSoil data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_soil_data
    multivalued: true
    range: MimsSoil
    inlined: true
    inlined_as_list: true
  mims_symbiont_associated_data:
    description: Data that comply with Mims combined with SymbiontAssociated
    title: MimsSymbiontAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_symbiont_associated_data
    multivalued: true
    range: MimsSymbiontAssociated
    inlined: true
    inlined_as_list: true
  mims_wastewater_sludge_data:
    description: Data that comply with Mims combined with WastewaterSludge
    title: MimsWastewaterSludge data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_wastewater_sludge_data
    multivalued: true
    range: MimsWastewaterSludge
    inlined: true
    inlined_as_list: true
  mims_water_data:
    description: Data that comply with Mims combined with Water
    title: MimsWater data
    domain: MixsCompliantData
    slot_uri: MIXS:mims_water_data
    multivalued: true
    range: MimsWater
    inlined: true
    inlined_as_list: true
  misag_data:
    description: Data that comply with checklist Misag
    title: Misag data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_data
    multivalued: true
    range: Misag
    inlined: true
    inlined_as_list: true
  misag_agriculture_data:
    description: Data that comply with Misag combined with Agriculture
    title: MisagAgriculture data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_agriculture_data
    multivalued: true
    range: MisagAgriculture
    inlined: true
    inlined_as_list: true
  misag_air_data:
    description: Data that comply with Misag combined with Air
    title: MisagAir data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_air_data
    multivalued: true
    range: MisagAir
    inlined: true
    inlined_as_list: true
  misag_built_environment_data:
    description: Data that comply with Misag combined with BuiltEnvironment
    title: MisagBuiltEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_built_environment_data
    multivalued: true
    range: MisagBuiltEnvironment
    inlined: true
    inlined_as_list: true
  misag_food_animal_and_animal_feed_data:
    description: Data that comply with Misag combined with FoodAnimalAndAnimalFeed
    title: MisagFoodAnimalAndAnimalFeed data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_food_animal_and_animal_feed_data
    multivalued: true
    range: MisagFoodAnimalAndAnimalFeed
    inlined: true
    inlined_as_list: true
  misag_food_farm_environment_data:
    description: Data that comply with Misag combined with FoodFarmEnvironment
    title: MisagFoodFarmEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_food_farm_environment_data
    multivalued: true
    range: MisagFoodFarmEnvironment
    inlined: true
    inlined_as_list: true
  misag_food_food_production_facility_data:
    description: Data that comply with Misag combined with FoodFoodProductionFacility
    title: MisagFoodFoodProductionFacility data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_food_food_production_facility_data
    multivalued: true
    range: MisagFoodFoodProductionFacility
    inlined: true
    inlined_as_list: true
  misag_food_human_foods_data:
    description: Data that comply with Misag combined with FoodHumanFoods
    title: MisagFoodHumanFoods data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_food_human_foods_data
    multivalued: true
    range: MisagFoodHumanFoods
    inlined: true
    inlined_as_list: true
  misag_host_associated_data:
    description: Data that comply with Misag combined with HostAssociated
    title: MisagHostAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_host_associated_data
    multivalued: true
    range: MisagHostAssociated
    inlined: true
    inlined_as_list: true
  misag_human_associated_data:
    description: Data that comply with Misag combined with HumanAssociated
    title: MisagHumanAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_human_associated_data
    multivalued: true
    range: MisagHumanAssociated
    inlined: true
    inlined_as_list: true
  misag_human_gut_data:
    description: Data that comply with Misag combined with HumanGut
    title: MisagHumanGut data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_human_gut_data
    multivalued: true
    range: MisagHumanGut
    inlined: true
    inlined_as_list: true
  misag_human_oral_data:
    description: Data that comply with Misag combined with HumanOral
    title: MisagHumanOral data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_human_oral_data
    multivalued: true
    range: MisagHumanOral
    inlined: true
    inlined_as_list: true
  misag_human_skin_data:
    description: Data that comply with Misag combined with HumanSkin
    title: MisagHumanSkin data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_human_skin_data
    multivalued: true
    range: MisagHumanSkin
    inlined: true
    inlined_as_list: true
  misag_human_vaginal_data:
    description: Data that comply with Misag combined with HumanVaginal
    title: MisagHumanVaginal data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_human_vaginal_data
    multivalued: true
    range: MisagHumanVaginal
    inlined: true
    inlined_as_list: true
  misag_hydrocarbon_resources_cores_data:
    description: Data that comply with Misag combined with HydrocarbonResourcesCores
    title: MisagHydrocarbonResourcesCores data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_hydrocarbon_resources_cores_data
    multivalued: true
    range: MisagHydrocarbonResourcesCores
    inlined: true
    inlined_as_list: true
  misag_hydrocarbon_resources_fluids_swabs_data:
    description: Data that comply with Misag combined with HydrocarbonResourcesFluidsSwabs
    title: MisagHydrocarbonResourcesFluidsSwabs data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_hydrocarbon_resources_fluids_swabs_data
    multivalued: true
    range: MisagHydrocarbonResourcesFluidsSwabs
    inlined: true
    inlined_as_list: true
  misag_microbial_mat_biofilm_data:
    description: Data that comply with Misag combined with MicrobialMatBiofilm
    title: MisagMicrobialMatBiofilm data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_microbial_mat_biofilm_data
    multivalued: true
    range: MisagMicrobialMatBiofilm
    inlined: true
    inlined_as_list: true
  misag_miscellaneous_natural_or_artificial_environment_data:
    description: Data that comply with Misag combined with MiscellaneousNaturalOrArtificialEnvironment
    title: MisagMiscellaneousNaturalOrArtificialEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_miscellaneous_natural_or_artificial_environment_data
    multivalued: true
    range: MisagMiscellaneousNaturalOrArtificialEnvironment
    inlined: true
    inlined_as_list: true
  misag_plant_associated_data:
    description: Data that comply with Misag combined with PlantAssociated
    title: MisagPlantAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_plant_associated_data
    multivalued: true
    range: MisagPlantAssociated
    inlined: true
    inlined_as_list: true
  misag_sediment_data:
    description: Data that comply with Misag combined with Sediment
    title: MisagSediment data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_sediment_data
    multivalued: true
    range: MisagSediment
    inlined: true
    inlined_as_list: true
  misag_soil_data:
    description: Data that comply with Misag combined with Soil
    title: MisagSoil data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_soil_data
    multivalued: true
    range: MisagSoil
    inlined: true
    inlined_as_list: true
  misag_symbiont_associated_data:
    description: Data that comply with Misag combined with SymbiontAssociated
    title: MisagSymbiontAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_symbiont_associated_data
    multivalued: true
    range: MisagSymbiontAssociated
    inlined: true
    inlined_as_list: true
  misag_wastewater_sludge_data:
    description: Data that comply with Misag combined with WastewaterSludge
    title: MisagWastewaterSludge data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_wastewater_sludge_data
    multivalued: true
    range: MisagWastewaterSludge
    inlined: true
    inlined_as_list: true
  misag_water_data:
    description: Data that comply with Misag combined with Water
    title: MisagWater data
    domain: MixsCompliantData
    slot_uri: MIXS:misag_water_data
    multivalued: true
    range: MisagWater
    inlined: true
    inlined_as_list: true
  miuvig_data:
    description: Data that comply with checklist Miuvig
    title: Miuvig data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_data
    multivalued: true
    range: Miuvig
    inlined: true
    inlined_as_list: true
  miuvig_agriculture_data:
    description: Data that comply with Miuvig combined with Agriculture
    title: MiuvigAgriculture data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_agriculture_data
    multivalued: true
    range: MiuvigAgriculture
    inlined: true
    inlined_as_list: true
  miuvig_air_data:
    description: Data that comply with Miuvig combined with Air
    title: MiuvigAir data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_air_data
    multivalued: true
    range: MiuvigAir
    inlined: true
    inlined_as_list: true
  miuvig_built_environment_data:
    description: Data that comply with Miuvig combined with BuiltEnvironment
    title: MiuvigBuiltEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_built_environment_data
    multivalued: true
    range: MiuvigBuiltEnvironment
    inlined: true
    inlined_as_list: true
  miuvig_food_animal_and_animal_feed_data:
    description: Data that comply with Miuvig combined with FoodAnimalAndAnimalFeed
    title: MiuvigFoodAnimalAndAnimalFeed data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_food_animal_and_animal_feed_data
    multivalued: true
    range: MiuvigFoodAnimalAndAnimalFeed
    inlined: true
    inlined_as_list: true
  miuvig_food_farm_environment_data:
    description: Data that comply with Miuvig combined with FoodFarmEnvironment
    title: MiuvigFoodFarmEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_food_farm_environment_data
    multivalued: true
    range: MiuvigFoodFarmEnvironment
    inlined: true
    inlined_as_list: true
  miuvig_food_food_production_facility_data:
    description: Data that comply with Miuvig combined with FoodFoodProductionFacility
    title: MiuvigFoodFoodProductionFacility data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_food_food_production_facility_data
    multivalued: true
    range: MiuvigFoodFoodProductionFacility
    inlined: true
    inlined_as_list: true
  miuvig_food_human_foods_data:
    description: Data that comply with Miuvig combined with FoodHumanFoods
    title: MiuvigFoodHumanFoods data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_food_human_foods_data
    multivalued: true
    range: MiuvigFoodHumanFoods
    inlined: true
    inlined_as_list: true
  miuvig_host_associated_data:
    description: Data that comply with Miuvig combined with HostAssociated
    title: MiuvigHostAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_host_associated_data
    multivalued: true
    range: MiuvigHostAssociated
    inlined: true
    inlined_as_list: true
  miuvig_human_associated_data:
    description: Data that comply with Miuvig combined with HumanAssociated
    title: MiuvigHumanAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_human_associated_data
    multivalued: true
    range: MiuvigHumanAssociated
    inlined: true
    inlined_as_list: true
  miuvig_human_gut_data:
    description: Data that comply with Miuvig combined with HumanGut
    title: MiuvigHumanGut data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_human_gut_data
    multivalued: true
    range: MiuvigHumanGut
    inlined: true
    inlined_as_list: true
  miuvig_human_oral_data:
    description: Data that comply with Miuvig combined with HumanOral
    title: MiuvigHumanOral data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_human_oral_data
    multivalued: true
    range: MiuvigHumanOral
    inlined: true
    inlined_as_list: true
  miuvig_human_skin_data:
    description: Data that comply with Miuvig combined with HumanSkin
    title: MiuvigHumanSkin data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_human_skin_data
    multivalued: true
    range: MiuvigHumanSkin
    inlined: true
    inlined_as_list: true
  miuvig_human_vaginal_data:
    description: Data that comply with Miuvig combined with HumanVaginal
    title: MiuvigHumanVaginal data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_human_vaginal_data
    multivalued: true
    range: MiuvigHumanVaginal
    inlined: true
    inlined_as_list: true
  miuvig_hydrocarbon_resources_cores_data:
    description: Data that comply with Miuvig combined with HydrocarbonResourcesCores
    title: MiuvigHydrocarbonResourcesCores data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_hydrocarbon_resources_cores_data
    multivalued: true
    range: MiuvigHydrocarbonResourcesCores
    inlined: true
    inlined_as_list: true
  miuvig_hydrocarbon_resources_fluids_swabs_data:
    description: Data that comply with Miuvig combined with HydrocarbonResourcesFluidsSwabs
    title: MiuvigHydrocarbonResourcesFluidsSwabs data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_hydrocarbon_resources_fluids_swabs_data
    multivalued: true
    range: MiuvigHydrocarbonResourcesFluidsSwabs
    inlined: true
    inlined_as_list: true
  miuvig_microbial_mat_biofilm_data:
    description: Data that comply with Miuvig combined with MicrobialMatBiofilm
    title: MiuvigMicrobialMatBiofilm data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_microbial_mat_biofilm_data
    multivalued: true
    range: MiuvigMicrobialMatBiofilm
    inlined: true
    inlined_as_list: true
  miuvig_miscellaneous_natural_or_artificial_environment_data:
    description: Data that comply with Miuvig combined with MiscellaneousNaturalOrArtificialEnvironment
    title: MiuvigMiscellaneousNaturalOrArtificialEnvironment data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_miscellaneous_natural_or_artificial_environment_data
    multivalued: true
    range: MiuvigMiscellaneousNaturalOrArtificialEnvironment
    inlined: true
    inlined_as_list: true
  miuvig_plant_associated_data:
    description: Data that comply with Miuvig combined with PlantAssociated
    title: MiuvigPlantAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_plant_associated_data
    multivalued: true
    range: MiuvigPlantAssociated
    inlined: true
    inlined_as_list: true
  miuvig_sediment_data:
    description: Data that comply with Miuvig combined with Sediment
    title: MiuvigSediment data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_sediment_data
    multivalued: true
    range: MiuvigSediment
    inlined: true
    inlined_as_list: true
  miuvig_soil_data:
    description: Data that comply with Miuvig combined with Soil
    title: MiuvigSoil data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_soil_data
    multivalued: true
    range: MiuvigSoil
    inlined: true
    inlined_as_list: true
  miuvig_symbiont_associated_data:
    description: Data that comply with Miuvig combined with SymbiontAssociated
    title: MiuvigSymbiontAssociated data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_symbiont_associated_data
    multivalued: true
    range: MiuvigSymbiontAssociated
    inlined: true
    inlined_as_list: true
  miuvig_wastewater_sludge_data:
    description: Data that comply with Miuvig combined with WastewaterSludge
    title: MiuvigWastewaterSludge data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_wastewater_sludge_data
    multivalued: true
    range: MiuvigWastewaterSludge
    inlined: true
    inlined_as_list: true
  miuvig_water_data:
    description: Data that comply with Miuvig combined with Water
    title: MiuvigWater data
    domain: MixsCompliantData
    slot_uri: MIXS:miuvig_water_data
    multivalued: true
    range: MiuvigWater
    inlined: true
    inlined_as_list: true
  HACCP_term:
    description: Hazard Analysis Critical Control Points (HACCP) food safety terms;
      This field accepts terms listed under HACCP guide food safety term (http://purl.obolibrary.org/obo/FOODON_03530221)
    title: Hazard Analysis Critical Control Points (HACCP) guide food safety term
    examples:
      - value: tetrodotoxic poisoning [FOODON:03530249]
    keywords:
      - food
      - term
    slot_uri: MIXS:0001215
    multivalued: true
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  IFSAC_category:
    annotations:
      Expected_value: IFSAC term
    description: 'The IFSAC food categorization scheme has five distinct levels to
      which foods can be assigned, depending upon the type of food. First, foods are
      assigned to one of four food groups (aquatic animals, land animals, plants,
      and other). Food groups include increasingly specific food categories; dairy,
      eggs, meat and poultry, and game are in the land animal food group, and the
      category meat and poultry is further subdivided into more specific categories
      of meat (beef, pork, other meat) and poultry (chicken, turkey, other poultry).
      Finally, foods are differentiated by differences in food processing (such as
      pasteurized fluid dairy products, unpasteurized fluid dairy products, pasteurized
      solid and semi-solid dairy products, and unpasteurized solid and semi-solid
      dairy products. An IFSAC food category chart is available from https://www.cdc.gov/foodsafety/ifsac/projects/food-categorization-scheme.html
      PMID: 28926300'
    title: Interagency Food Safety Analytics Collaboration (IFSAC) category
    examples:
      - value: Plants:Produce:Vegetables:Herbs:Dried Herbs
    keywords:
      - food
    range: string
    slot_uri: MIXS:0001179
    multivalued: true
    required: true
  abs_air_humidity:
    annotations:
      Preferred_unit: gram per gram, kilogram per kilogram, kilogram, pound
    description: Actual mass of water vapor - mh20 - present in the air water vapor
      mixture
    title: absolute air humidity
    examples:
      - value: 9 gram per gram
    keywords:
      - absolute
      - air
      - humidity
    slot_uri: MIXS:0000122
    range: string
    required: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  adapters:
    description: Adapters provide priming sequences for both amplification and sequencing
      of the sample-library fragments. Both adapters should be reported; in uppercase
      letters
    title: adapters
    examples:
      - value: AATGATACGGCGACCACCGAGATCTACACGCT;CAAGCAGAAGACGGCATACGAGAT
    in_subset:
      - sequencing
    structured_pattern:
      syntax: ^{adapter_A_DNA_sequence};{adapter_B_DNA_sequence}$
      interpolated: true
      partial_match: true
    slot_uri: MIXS:0000048
  add_recov_method:
    description: Additional (i.e. Secondary, tertiary, etc.) recovery methods deployed
      for increase of hydrocarbon recovery from resource and start date for each one
      of them. If "other" is specified, please propose entry in "additional info"
      field
    title: secondary and tertiary recovery methods and start date
    examples:
      - value: Polymer Addition;2018-06-21T14:30Z
    keywords:
      - date
      - method
      - recover
      - secondary
      - start
    structured_pattern:
      syntax: '^({add_recov_methods});{date_time_stamp}$'
      interpolated: true
      partial_match: true
    slot_uri: MIXS:0001009
    required: true
  additional_info:
    description: Information that doesn't fit anywhere else. Can also be used to propose
      new entries for fields with controlled vocabulary
    title: additional info
    keywords:
      - information
    slot_uri: MIXS:0000300
    range: string
  address:
    description: The street name and building number where the sampling occurred
    title: address
    structured_pattern:
      syntax: ^{integer} {text}}$
      interpolated: true
      partial_match: true
    slot_uri: MIXS:0000218
  adj_room:
    description: List of rooms (room number, room name) immediately adjacent to the
      sampling room
    title: adjacent rooms
    keywords:
      - adjacent
      - room
    slot_uri: MIXS:0000219
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[1-9][0-9]*$
    structured_pattern:
      syntax: ^{room_name};{room_number}$
      interpolated: true
      partial_match: true
  adjacent_environment:
    annotations:
      Expected_value: ENVO_01001110 or ENVO_00000070
    description: Description of the environmental system or features that are adjacent
      to the sampling site. This field accepts terms under ecosystem (http://purl.obolibrary.org/obo/ENVO_01001110)
      and human construction (http://purl.obolibrary.org/obo/ENVO_00000070). Multiple
      terms can be separated by pipes
    title: environment adjacent to site
    examples:
      - value: estuarine biome [ENVO:01000020]
    keywords:
      - adjacent
      - environment
      - site
    string_serialization: '{termLabel}{[termID]}'
    slot_uri: MIXS:0001121
    multivalued: true
  aero_struc:
    description: Aerospace structures typically consist of thin plates with stiffeners
      for the external surfaces, bulkheads and frames to support the shape and fasteners
      such as welds, rivets, screws and bolts to hold the components together
    title: aerospace structure
    examples:
      - value: plane
    slot_uri: MIXS:0000773
    range: AeroStrucEnum
  agrochem_addition:
    annotations:
      Preferred_unit: gram, mole per liter, milligram per liter
    description: Addition of fertilizers, pesticides, etc. - amount and time of applications
    title: history/agrochemical additions
    examples:
      - value: roundup;5 milligram per liter;2018-06-21
    keywords:
      - history
    structured_pattern:
      syntax: ^{agrochemical_name};{amount} {unit};{date_time_stamp}$
      interpolated: true
      partial_match: true
    slot_uri: MIXS:0000639
    multivalued: true
  air_PM_concen:
    description: Concentration of substances that remain suspended in the air, and
      comprise mixtures of organic and inorganic substances (PM10 and PM2.5); can
      report multiple PM's by entering numeric values preceded by name of PM
    title: air particulate matter concentration
    examples:
      - value: PM2.5;10 microgram per cubic meter
    keywords:
      - air
      - concentration
      - particle
      - particulate
    structured_pattern:
      syntax: ^{particulate_matter_name};{float} {unit}$
      interpolated: true
      partial_match: true
    slot_uri: MIXS:0000108
    multivalued: true
  air_flow_impede:
    annotations:
      Expected_value: enumeration;obstruction type; distance from sampling device
    description: Presence of objects in the area that would influence or impede air
      flow through the air filter
    title: local air flow impediments
    examples:
      - value: obstructed;hay bales; 2 m
    keywords:
      - air
    string_serialization: '[obstructed|unobstructed]; {text}; {measurement value}'
    slot_uri: MIXS:0001146
    multivalued: true
  air_temp:
    annotations:
      Preferred_unit: degree Celsius
    description: Temperature of the air at the time of sampling
    title: air temperature
    keywords:
      - air
      - temperature
    slot_uri: MIXS:0000124
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  air_temp_regm:
    annotations:
      Expected_value: temperature value;treatment interval and duration
      Preferred_unit: meter
    description: Information about treatment involving an exposure to varying temperatures;
      should include the temperature, treatment regimen including how many times the
      treatment was repeated, how long each treatment lasted, and the start and end
      time of the entire treatment; can include different temperature regimens
    title: air temperature regimen
    examples:
      - value: 25 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M
    keywords:
      - air
      - regimen
      - temperature
    string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000551
    multivalued: true
  al_sat:
    annotations:
      Preferred_unit: percentage
    description: Aluminum saturation (esp. For tropical soils)
    title: extreme_unusual_properties/Al saturation
    keywords:
      - extreme
      - properties
      - saturation
      - unusual
    slot_uri: MIXS:0000607
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  al_sat_meth:
    description: Reference or method used in determining Al saturation
    title: extreme_unusual_properties/Al saturation method
    keywords:
      - extreme
      - method
      - properties
      - saturation
      - unusual
    slot_uri: MIXS:0000324
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  alkalinity:
    annotations:
      Preferred_unit: milliequivalent per liter, milligram per liter
    description: Alkalinity, the ability of a solution to neutralize acids to the
      equivalence point of carbonate or bicarbonate
    title: alkalinity
    examples:
      - value: 50 milligram per liter
    keywords:
      - alkalinity
    slot_uri: MIXS:0000421
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  alkalinity_method:
    description: Method used for alkalinity measurement
    title: alkalinity method
    examples:
      - value: titration
    keywords:
      - alkalinity
      - method
    slot_uri: MIXS:0000298
    range: string
  alkyl_diethers:
    description: Concentration of alkyl diethers
    title: alkyl diethers
    examples:
      - value: 0.005 mole per liter
    slot_uri: MIXS:0000490
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  alt:
    annotations:
      Preferred_unit: meter
    description: Heights of objects such as airplanes, space shuttles, rockets, atmospheric
      balloons and heights of places such as atmospheric layers and clouds. It is
      used to measure the height of an object which is above the earth's surface.
      In this context, the altitude measurement is the vertical distance between the
      earth's surface above sea level and the sampled position in the air
    title: altitude
    examples:
      - value: 100 meter
    in_subset:
      - environment
    slot_uri: MIXS:0000094
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  aminopept_act:
    annotations:
      Preferred_unit: mole per liter per hour
    description: Measurement of aminopeptidase activity
    title: aminopeptidase activity
    examples:
      - value: 0.269 mole per liter per hour
    slot_uri: MIXS:0000172
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  ammonium:
    annotations:
      Preferred_unit: micromole per liter, milligram per liter, parts per million
    description: Concentration of ammonium in the sample
    title: ammonium
    examples:
      - value: 1.5 milligram per liter
    slot_uri: MIXS:0000427
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  amniotic_fluid_color:
    description: Specification of the color of the amniotic fluid sample
    title: amniotic fluid/color
    slot_uri: MIXS:0000276
    range: string
  amount_light:
    annotations:
      Preferred_unit: lux, lumens per square meter
    description: The unit of illuminance and luminous emittance, measuring luminous
      flux per unit area
    title: amount of light
    keywords:
      - light
    slot_uri: MIXS:0000140
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  ances_data:
    description: Information about either pedigree or other ancestral information
      description (e.g. parental variety in case of mutant or selection), e.g. A/3*B
      (meaning [(A x B) x B] x B)
    title: ancestral data
    examples:
      - value: A/3*B
    slot_uri: MIXS:0000247
    range: string
  anim_water_method:
    description: Description of the equipment or method used to distribute water to
      livestock. This field accepts termed listed under water delivery equipment (http://opendata.inra.fr/EOL/EOL_0001653).
      Multiple terms can be separated by pipes
    title: animal water delivery method
    examples:
      - value: water trough [EOL:0001618]
    keywords:
      - animal
      - delivery
      - method
      - water
    slot_uri: MIXS:0001115
    multivalued: true
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  animal_am:
    description: The name(s) (generic or brand) of the antimicrobial(s) given to the
      food animal within the last 30 days
    title: food animal antimicrobial
    examples:
      - value: tetracycline
    keywords:
      - animal
      - antimicrobial
      - food
    slot_uri: MIXS:0001243
    range: string
  animal_am_dur:
    description: The duration of time (days) that the antimicrobial was administered
      to the food animal
    title: food animal antimicrobial duration
    examples:
      - value: 3 days
    keywords:
      - animal
      - antimicrobial
      - duration
      - food
      - period
    structured_pattern:
      syntax: ^{float} days$
      interpolated: true
      partial_match: true
    slot_uri: MIXS:0001244
  animal_am_freq:
    description: The frequency per day that the antimicrobial was administered to the
      food animal
    title: food animal antimicrobial frequency
    examples:
      - value: '1.5'
    keywords:
      - animal
      - antimicrobial
      - food
      - frequency
    slot_uri: MIXS:0001245
    range: float
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  animal_am_route:
    description: The route by which the antimicrobial is adminstered into the body
      of the food animal
    title: food animal antimicrobial route of administration
    examples:
      - value: oral-feed
    keywords:
      - administration
      - animal
      - antimicrobial
      - food
      - route
    slot_uri: MIXS:0001246
    range: string
  animal_am_use:
    description: The prescribed intended use of or the condition treated by the antimicrobial
      given to the food animal by any route of administration
    title: food animal antimicrobial intended use
    examples:
      - value: shipping fever
    keywords:
      - animal
      - antimicrobial
      - food
      - use
    slot_uri: MIXS:0001247
    range: string
  animal_body_cond:
    description: Body condition scoring is a production management tool used to evaluate
      overall health and nutritional needs of a food animal. Because there are different
      scoring systems, this field is restricted to three categories
    title: food animal body condition
    examples:
      - value: under conditioned
    keywords:
      - animal
      - body
      - condition
      - food
    slot_uri: MIXS:0001248
    range: AnimalBodyCondEnum
  animal_diet:
    annotations:
      Expected_value: text or FOODON_03309997
    description: If the isolate is from a food animal, the type of diet eaten by the
      food animal.  Please list the main food staple and the setting, if appropriate.  For
      a list of acceptable animal feed terms or categories, please see http://www.feedipedia.org.  Multiple
      terms may apply and can be separated by pipes |Food product for animal covers
      foods intended for consumption by domesticated animals. Consult http://purl.obolibrary.org/obo/FOODON_03309997.
      If the proper descriptor is not listed please use text to describe the food
      type. Multiple terms can be separated by one or more pipes. If the proper descriptor
      is not listed please use text to describe the food product type
    title: food animal source diet
    examples:
      - value: Hay [FOODON:03301763]
    keywords:
      - animal
      - diet
      - food
      - source
    range: string
    slot_uri: MIXS:0001130
    multivalued: true
  animal_feed_equip:
    annotations:
      Expected_value: EOL:0001757
    description: Description of the feeding equipment used for livestock. This field
      accepts terms listed under feed delivery (http://opendata.inra.fr/EOL/EOL_0001757).
      Multiple terms can be separated by pipes
    title: animal feeding equipment
    examples:
      - value: self feeding [EOL:0001645]| straight feed trough [EOL:0001661]
    keywords:
      - animal
      - equipment
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
    slot_uri: MIXS:0001113
    multivalued: true
  animal_group_size:
    description: The number of food animals of the same species that are maintained
      together as a unit, i.e. a herd or flock
    title: food animal group size
    examples:
      - value: '80'
    keywords:
      - animal
      - food
      - size
    slot_uri: MIXS:0001129
    range: integer
  animal_housing:
    description: Description of the housing system of the livestock. This field accepts
      terms listed under terrestrial management housing system (http://opendata.inra.fr/EOL/EOL_0001605)
    title: animal housing system
    examples:
      - value: pen rearing system [EOL:0001636]
    keywords:
      - animal
    slot_uri: MIXS:0001180
    multivalued: true
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  animal_intrusion:
    description: Identification of animals intruding on the sample or sample site
      including invertebrates (such as pests or pollinators) and vertebrates (such
      as wildlife or domesticated animals). This field accepts terms under organism
      (http://purl.obolibrary.org/obo/NCIT_C14250). This field also accepts identification
      numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy. Multiple terms
      can be separated by pipes
    title: animal intrusion near sample source
    examples:
      - value: Thripidae [NCBITaxon:45053]
    keywords:
      - animal
      - sample
      - source
    slot_uri: MIXS:0001114
    multivalued: true
    range: string
    pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$
    structured_pattern:
      syntax: ^({termLabel} \[{termID}\])|{integer}$
      interpolated: true
      partial_match: true
  animal_sex:
    description: The sex and reproductive status of the food animal
    title: food animal source sex category
    examples:
      - value: castrated male
    keywords:
      - animal
      - food
      - source
    slot_uri: MIXS:0001249
    range: AnimalSexEnum
  annot:
    annotations:
      Expected_value: name of tool or pipeline used, or annotation source description
    description: Tool used for annotation, or for cases where annotation was provided
      by a community jamboree or model organism database rather than by a specific
      submitter
    title: annotation
    examples:
      - value: prokka
    in_subset:
      - sequencing
    range: string
    slot_uri: MIXS:0000059
  annual_precpt:
    annotations:
      Preferred_unit: millimeter
    description: The average of all annual precipitation values known, or an estimated
      equivalent value derived by such methods as regional indexes or Isohyetal maps
    title: mean annual precipitation
    keywords:
      - mean
    slot_uri: MIXS:0000644
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  annual_temp:
    annotations:
      Preferred_unit: degree Celsius
    description: Mean annual temperature
    title: mean annual temperature
    examples:
      - value: 12.5 degree Celsius
    keywords:
      - mean
      - temperature
    slot_uri: MIXS:0000642
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  antibiotic_regm:
    annotations:
      Expected_value: antibiotic name;antibiotic amount;treatment interval and duration
      Preferred_unit: milligram
    description: Information about treatment involving antibiotic administration;
      should include the name of antibiotic, amount administered, treatment regimen
      including how many times the treatment was repeated, how long each treatment
      lasted, and the start and end time of the entire treatment; can include multiple
      antibiotic regimens
    title: antibiotic regimen
    examples:
      - value: penicillin;5 milligram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M
    keywords:
      - regimen
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000553
    multivalued: true
  api:
    annotations:
      Preferred_unit: degrees API
    description: 'API gravity is a measure of how heavy or light a petroleum liquid
      is compared to water (source: https://en.wikipedia.org/wiki/API_gravity) (e.g.
      31.1   API)'
    title: API gravity
    examples:
      - value: 31.1 API
    slot_uri: MIXS:0000157
    range: string
    required: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  arch_struc:
    description: An architectural structure is a human-made, free-standing, immobile
      outdoor construction
    title: architectural structure
    examples:
      - value: shed
    slot_uri: MIXS:0000774
    range: ArchStrucEnum
  area_samp_size:
    annotations:
      Expected_value: measurement value
      Preferred_unit: centimeter
    description: The total amount or size (volume (ml), mass (g) or area (m2) ) of
      sample collected
    title: area sampled size
    examples:
      - value: 12 centimeter x 12 centimeter
    keywords:
      - area
      - sample
      - size
    string_serialization: '{integer} {unit} x {integer} {unit}'
    slot_uri: MIXS:0001255
  aromatics_pc:
    annotations:
      Preferred_unit: percent
    description: 'Saturate, Aromatic, Resin and Asphaltene  (SARA) is an analysis
      method that divides  crude oil  components according to their polarizability
      and polarity. There are three main methods to obtain SARA results. The most
      popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
      https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
    title: aromatics wt%
    slot_uri: MIXS:0000133
    range: string
    recommended: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{name};{float} {unit}$
      interpolated: true
      partial_match: true
  asphaltenes_pc:
    annotations:
      Preferred_unit: percent
    description: 'Saturate, Aromatic, Resin and Asphaltene  (SARA) is an analysis
      method that divides  crude oil  components according to their polarizability
      and polarity. There are three main methods to obtain SARA results. The most
      popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
      https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
    title: asphaltenes wt%
    slot_uri: MIXS:0000135
    range: string
    recommended: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{name};{float} {unit}$
      interpolated: true
      partial_match: true
  assembly_name:
    annotations:
      Expected_value: name and version of assembly
    description: Name/version of the assembly provided by the submitter that is used
      in the genome browsers and in the community
    title: assembly name
    examples:
      - value: HuRef, JCVI_ISG_i3_1.0
    in_subset:
      - sequencing
    string_serialization: '{text} {text}'
    slot_uri: MIXS:0000057
  assembly_qual:
    description: 'The assembly quality category is based on sets of criteria outlined
      for each assembly quality category. For MISAG/MIMAG; Finished: Single, validated,
      contiguous sequence per replicon without gaps or ambiguities with a consensus
      error rate equivalent to Q50 or better. High Quality Draft:Multiple fragments
      where gaps span repetitive regions. Presence of the large subunit (LSU) RNA, small
      subunit (SSU) and the presence of 5.8S rRNA or 5S rRNA depending on whether it is
      a eukaryotic or prokaryotic genome, respectively.
      Medium Quality Draft:Many fragments with little to no
      review of assembly other than reporting of standard assembly statistics. Low
      Quality Draft:Many fragments with little to no review of assembly other than
      reporting of standard assembly statistics. Assembly statistics include, but
      are not limited to total assembly size, number of contigs, contig N50/L50, and
      maximum contig length. For MIUVIG; Finished: Single, validated, contiguous sequence
      per replicon without gaps or ambiguities, with extensive manual review and editing
      to annotate putative gene functions and transcriptional units. High-quality
      draft genome: One or multiple fragments, totaling   90% of the expected genome
      or replicon sequence or predicted complete. Genome fragment(s): One or multiple
      fragments, totalling < 90% of the expected genome or replicon sequence, or for
      which no genome size could be estimated'
    title: assembly quality
    examples:
      - value: High-quality draft genome
    in_subset:
      - sequencing
    keywords:
      - quality
    range: AssemblyQualEnum
    slot_uri: MIXS:0000056
  assembly_software:
    description: Tool(s) used for assembly, including version number and parameters
    title: assembly software
    examples:
      - value: metaSPAdes;3.11.0;kmer set 21,33,55,77,99,121, default parameters otherwise
    in_subset:
      - sequencing
    keywords:
      - software
    slot_uri: MIXS:0000058
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{software};{version};{parameters}$
      interpolated: true
      partial_match: true
  associated_resource:
    annotations:
      Expected_value: reference to resource
    description: A related resource that is referenced, cited, or otherwise associated
      to the sequence
    title: relevant electronic resources
    examples:
      - value: http://www.earthmicrobiome.org/
    in_subset:
      - sequencing
    keywords:
      - resource
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000091
    multivalued: true
    recommended: true
  association_duration:
    annotations:
      Preferred_unit: year, day, hour
    description: Time spent in host of the symbiotic organism at the time of sampling;
      relevant scale depends on symbiotic organism and study
    title: duration of association with the host
    keywords:
      - duration
      - host
      - host.
      - period
    slot_uri: MIXS:0001299
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  atmospheric_data:
    annotations:
      Expected_value: atmospheric data name;measurement value
    description: Measurement of atmospheric data; can include multiple data
    title: atmospheric data
    examples:
      - value: wind speed;9 knots
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0001097
    multivalued: true
  avg_dew_point:
    annotations:
      Preferred_unit: degree Celsius
    description: The average of dew point measures taken at the beginning of every
      hour over a 24 hour period on the sampling day
    title: average dew point
    examples:
      - value: 25.5 degree Celsius
    keywords:
      - average
    slot_uri: MIXS:0000141
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  avg_occup:
    description: Daily average occupancy of room. Indicate the number of person(s)
      daily occupying the sampling room
    title: average daily occupancy
    keywords:
      - average
    slot_uri: MIXS:0000775
    range: float
  avg_temp:
    annotations:
      Preferred_unit: degree Celsius
    description: The average of temperatures taken at the beginning of every hour
      over a 24 hour period on the sampling day
    title: average temperature
    examples:
      - value: 12.5 degree Celsius
    keywords:
      - average
      - temperature
    slot_uri: MIXS:0000142
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  bac_prod:
    annotations:
      Preferred_unit: milligram per cubic meter per day
    description: Bacterial production in the water column measured by isotope uptake
    title: bacterial production
    examples:
      - value: 5 milligram per cubic meter per day
    keywords:
      - production
    slot_uri: MIXS:0000683
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  bac_resp:
    annotations:
      Preferred_unit: milligram per cubic meter per day, micromole oxygen per liter per hour
    description: Measurement of bacterial respiration in the water column
    title: bacterial respiration
    examples:
      - value: 300 micromole oxygen per liter per hour
    slot_uri: MIXS:0000684
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  bacteria_carb_prod:
    description: Measurement of bacterial carbon production
    title: bacterial carbon production
    examples:
      - value: 2.53 microgram per liter per hour
    keywords:
      - carbon
      - production
    slot_uri: MIXS:0000173
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  bacterial_density:
    annotations:
      Preferred_unit: colony forming units per milliliter; colony forming units per gram
        of dry weight
    description: Number of bacteria in sample, as defined by bacteria density (http://purl.obolibrary.org/obo/GENEPIO_0000043)
    title: bacteria density
    examples:
      - value: 10 colony forming units per gram dry weight
    keywords:
      - density
    slot_uri: MIXS:0001194
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  barometric_press:
    annotations:
      Preferred_unit: millibar
    description: Force per unit area exerted against a surface by the weight of air
      above that surface
    title: barometric pressure
    examples:
      - value: 5 millibar
    keywords:
      - pressure
    slot_uri: MIXS:0000096
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  basin:
    description: Name of the basin (e.g. Campos)
    title: basin name
    examples:
      - value: Campos
    slot_uri: MIXS:0000290
    range: string
    required: true
  bathroom_count:
    description: The number of bathrooms in the building
    title: bathroom count
    examples:
      - value: '1'
    keywords:
      - count
    slot_uri: MIXS:0000776
    range: integer
  bedroom_count:
    description: The number of bedrooms in the building
    title: bedroom count
    examples:
      - value: '2'
    keywords:
      - count
    slot_uri: MIXS:0000777
    range: integer
  benzene:
    annotations:
      Preferred_unit: milligram per liter, parts per million
    description: Concentration of benzene in the sample
    title: benzene
    slot_uri: MIXS:0000153
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  bin_param:
    description: The parameters that have been applied during the extraction of genomes
      from metagenomic datasets
    title: binning parameters
    examples:
      - value: coverage
        description: was 'coverage and kmer'
      - value: kmer
        description: was coverage and kmer
    in_subset:
      - sequencing
    keywords:
      - parameter
    slot_uri: MIXS:0000077
    range: BinParamEnum
  bin_software:
    annotations:
      Expected_value: names and versions of software(s) used
    description: Tool(s) used for the extraction of genomes from metagenomic datasets,
      where possible include a product ID (PID) of the tool(s) used
    title: binning software
    examples:
      - value: MetaCluster-TA (RRID:SCR_004599), MaxBin (biotools:maxbin)
    in_subset:
      - sequencing
    keywords:
      - software
    string_serialization: '{software};{version}{PID}'
    slot_uri: MIXS:0000078
  biochem_oxygen_dem:
    annotations:
      Preferred_unit: milligram per liter
    description: Amount of dissolved oxygen needed by aerobic biological organisms
      in a body of water to break down organic material present in a given water sample
      at certain temperature over a specific time period
    title: biochemical oxygen demand
    keywords:
      - oxygen
    slot_uri: MIXS:0000653
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  biocide:
    annotations:
      Expected_value: name;name;timestamp
    description: List of biocides (commercial name of product and supplier) and date
      of administration
    title: biocide administration
    examples:
      - value: ALPHA 1427;Baker Hughes;2008-01-23
    keywords:
      - administration
    string_serialization: '{text};{text};{timestamp}'
    slot_uri: MIXS:0001011
    recommended: true
  biocide_admin_method:
    annotations:
      Expected_value: measurement value;frequency;duration;duration
      Preferred_unit: milligram per liter
    description: Method of biocide administration (dose, frequency, duration, time
      elapsed between last biociding and sampling) (e.g. 150 mg/l; weekly; 4 hr; 3
      days)
    title: biocide administration method
    keywords:
      - administration
      - method
    string_serialization: '{float} {unit};{Rn/start_time/end_time/duration};{duration}'
    slot_uri: MIXS:0000456
    recommended: true
  biocide_used:
    annotations:
      Expected_value: commercial name of biocide, active ingredient in biocide or class of
        biocide
    description: Substance intended for preventing, neutralizing, destroying, repelling,
      or mitigating the effects of any pest or microorganism; that inhibits the growth,
      reproduction, and activity of organisms, including fungal cells; decreases the
      number of fungi or pests present; deters microbial growth and degradation of
      other ingredients in the formulation. Indicate the biocide used on the location
      where the sample was taken. Multiple terms can be separated by pipes
    title: biocide
    examples:
      - value: Quaternary ammonium compound|SterBac
    range: string
    slot_uri: MIXS:0001258
    multivalued: true
  biol_stat:
    description: The level of genome modification
    title: biological status
    examples:
      - value: natural
    keywords:
      - status
    range: BiolStatEnum
    slot_uri: MIXS:0000858
  biomass:
    annotations:
      Expected_value: biomass type;measurement value
      Preferred_unit: ton, kilogram, gram
    description: Amount of biomass; should include the name for the part of biomass
      measured, e.g. Microbial, total. Can include multiple measurements
    title: biomass
    examples:
      - value: total;20 gram
    keywords:
      - biomass
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000174
    multivalued: true
  biotic_regm:
    description: Information about treatment(s) involving use of biotic factors, such
      as bacteria, viruses or fungi
    title: biotic regimen
    examples:
      - value: sample inoculated with Rhizobium spp. Culture
    keywords:
      - regimen
    slot_uri: MIXS:0001038
    multivalued: true
    range: string
  biotic_relationship:
    description: Description of relationship(s) between the subject organism and other
      organism(s) it is associated with. E.g., parasite on species X; mutualist with
      species Y. The target organism is the subject of the relationship, and the other
      organism(s) is the object
    title: observed biotic relationship
    examples:
      - value: free living
    in_subset:
      - nucleic acid sequence source
    keywords:
      - observed
      - relationship
    slot_uri: MIXS:0000028
    range: BioticRelationshipEnum
  birth_control:
    annotations:
      Expected_value: medication name
    description: Specification of birth control medication used
    title: birth control
    range: string
    slot_uri: MIXS:0000286
  bishomohopanol:
    annotations:
      Preferred_unit: microgram per liter, microgram per gram
    description: Concentration of bishomohopanol
    title: bishomohopanol
    examples:
      - value: 14 microgram per liter
    slot_uri: MIXS:0000175
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  blood_blood_disord:
    description: History of blood disorders; can include multiple disorders.  The
      terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org,
      hematopoietic system disease (https://disease-ontology.org/?id=DOID:74)
    title: blood/blood disorder
    keywords:
      - disorder
    slot_uri: MIXS:0000271
    multivalued: true
    range: string
  blood_press_diast:
    annotations:
      Preferred_unit: millimeter mercury
    description: Resting diastolic blood pressure, measured as mm mercury
    title: host blood pressure diastolic
    keywords:
      - host
      - host.
      - pressure
    slot_uri: MIXS:0000258
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  blood_press_syst:
    annotations:
      Preferred_unit: millimeter mercury
    description: Resting systolic blood pressure, measured as mm mercury
    title: host blood pressure systolic
    keywords:
      - host
      - host.
      - pressure
    slot_uri: MIXS:0000259
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  bromide:
    annotations:
      Preferred_unit: parts per million
    description: Concentration of bromide
    title: bromide
    examples:
      - value: 0.05 parts per million
    slot_uri: MIXS:0000176
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  build_docs:
    description: The building design, construction and operation documents
    title: design, construction, and operation documents
    examples:
      - value: maintenance plans
    keywords:
      - documents
    slot_uri: MIXS:0000787
    range: BuildDocsEnum
  build_occup_type:
    description: The primary function for which a building or discrete part of a building
      is intended to be used
    title: building occupancy type
    examples:
      - value: market
    keywords:
      - type
    slot_uri: MIXS:0000761
    multivalued: true
    range: BuildOccupTypeEnum
    required: true
  building_setting:
    description: A location (geography) where a building is set
    title: building setting
    examples:
      - value: rural
    slot_uri: MIXS:0000768
    range: BuildingSettingEnum
    required: true
  built_struc_age:
    annotations:
      Preferred_unit: year
    description: The age of the built structure since construction
    title: built structure age
    examples:
      - value: 15 years
    keywords:
      - age
    slot_uri: MIXS:0000145
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  built_struc_set:
    description: The characterization of the location of the built structure as high
      or low human density
    title: built structure setting
    examples:
      - value: rural
    slot_uri: MIXS:0000778
    range: BuiltStrucSetEnum
  built_struc_type:
    description: A physical structure that is a body or assemblage of bodies in space
      to form a system capable of supporting loads
    title: built structure type
    keywords:
      - type
    slot_uri: MIXS:0000721
    range: string
  calcium:
    annotations:
      Preferred_unit: milligram per liter, micromole per liter, parts per million
    description: Concentration of calcium in the sample
    title: calcium
    examples:
      - value: 0.2 micromole per liter
    slot_uri: MIXS:0000432
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  carb_dioxide:
    annotations:
      Preferred_unit: micromole per liter, parts per million
    description: Carbon dioxide (gas) amount or concentration at the time of sampling
    title: carbon dioxide
    examples:
      - value: 410 parts per million
    keywords:
      - carbon
    slot_uri: MIXS:0000097
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  carb_monoxide:
    annotations:
      Preferred_unit: micromole per liter, parts per million
    description: Carbon monoxide (gas) amount or concentration at the time of sampling
    title: carbon monoxide
    examples:
      - value: 0.1 parts per million
    keywords:
      - carbon
    slot_uri: MIXS:0000098
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  carb_nitro_ratio:
    annotations:
      Expected_value: measurement value
    description: Ratio of amount or concentrations of carbon to nitrogen
    title: carbon/nitrogen ratio
    examples:
      - value: '0.417361111'
    keywords:
      - carbon
      - nitrogen
      - ratio
    string_serialization: '{float}:{float}'
    slot_uri: MIXS:0000310
    range: float
  ceil_area:
    annotations:
      Preferred_unit: square meter
    description: The area of the ceiling space within the room
    title: ceiling area
    examples:
      - value: 25 square meter
    keywords:
      - area
      - ceiling
    slot_uri: MIXS:0000148
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  ceil_cond:
    description: The physical condition of the ceiling at the time of sampling; photos
      or video preferred; use drawings to indicate location of damaged areas
    title: ceiling condition
    examples:
      - value: damaged
    keywords:
      - ceiling
      - condition
    slot_uri: MIXS:0000779
    range: DamagedEnum
  ceil_finish_mat:
    description: The type of material used to finish a ceiling
    title: ceiling finish material
    examples:
      - value: stucco
    keywords:
      - ceiling
      - material
    slot_uri: MIXS:0000780
    range: CeilFinishMatEnum
  ceil_struc:
    description: The construction format of the ceiling
    title: ceiling structure
    examples:
      - value: concrete
    keywords:
      - ceiling
    slot_uri: MIXS:0000782
    range: CeilStrucEnum
  ceil_texture:
    description: The feel, appearance, or consistency of a ceiling surface
    title: ceiling texture
    examples:
      - value: popcorn
    keywords:
      - ceiling
      - texture
    slot_uri: MIXS:0000783
    range: CeilingWallTextureEnum
  ceil_thermal_mass:
    annotations:
      Preferred_unit: joule per degree Celsius
    description: The ability of the ceiling to provide inertia against temperature
      fluctuations. Generally this means concrete that is exposed. A metal deck that
      supports a concrete slab will act thermally as long as it is exposed to room
      air flow
    title: ceiling thermal mass
    keywords:
      - ceiling
      - mass
    slot_uri: MIXS:0000143
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  ceil_type:
    description: The type of ceiling according to the ceiling's appearance or construction
    title: ceiling type
    examples:
      - value: coffered
    keywords:
      - ceiling
      - type
    slot_uri: MIXS:0000784
    range: CeilTypeEnum
  ceil_water_mold:
    description: Signs of the presence of mold or mildew on the ceiling
    title: ceiling signs of water/mold
    examples:
      - value: presence of mold visible
    keywords:
      - ceiling
    slot_uri: MIXS:0000781
    range: MoldVisibilityEnum
  chem_administration:
    annotations:
      Expected_value: CHEBI;timestamp
    description: List of chemical compounds administered to the host or site where
      sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can
      include multiple compounds. For chemical entities of biological interest ontology
      (chebi) (v 163), http://purl.bioontology.org/ontology/chebi
    title: chemical administration
    examples:
      - value: agar [CHEBI:2509];2018-05-11T20:00Z
    keywords:
      - administration
    string_serialization: '{termLabel} [{termID}];{timestamp}'
    slot_uri: MIXS:0000751
    multivalued: true
  chem_mutagen:
    annotations:
      Expected_value: mutagen name;mutagen amount;treatment interval and duration
      Preferred_unit: milligram per liter
    description: Treatment involving use of mutagens; should include the name of mutagen,
      amount administered, treatment regimen including how many times the treatment
      was repeated, how long each treatment lasted, and the start and end time of
      the entire treatment; can include multiple mutagen regimens
    title: chemical mutagen
    examples:
      - value: nitrous acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000555
    multivalued: true
  chem_oxygen_dem:
    annotations:
      Preferred_unit: milligram per liter
    description: A measure of the capacity of water to consume oxygen during the decomposition
      of organic matter and the oxidation of inorganic chemicals such as ammonia and
      nitrite
    title: chemical oxygen demand
    keywords:
      - oxygen
    slot_uri: MIXS:0000656
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  chem_treat_method:
    annotations:
      Expected_value: measurement value;frequency;duration;duration
      Preferred_unit: milligram per liter
    description: Method of chemical administration(dose, frequency, duration, time
      elapsed between administration and sampling) (e.g. 50 mg/l; twice a week; 1
      hr; 0 days)
    title: chemical treatment method
    keywords:
      - method
      - treatment
    string_serialization: '{float} {unit};{Rn/start_time/end_time/duration};{duration};{duration}'
    slot_uri: MIXS:0000457
  chem_treatment:
    annotations:
      Expected_value: name;name;timestamp
    description: List of chemical compounds administered upstream the sampling location
      where sampling occurred (e.g. Glycols, H2S scavenger, corrosion and scale inhibitors,
      demulsifiers, and other production chemicals etc.). The commercial name of the
      product and name of the supplier should be provided. The date of administration
      should also be included
    title: chemical treatment
    examples:
      - value: ACCENT 1125;DOW;2010-11-17
    keywords:
      - treatment
    string_serialization: '{text};{text};{timestamp}'
    slot_uri: MIXS:0001012
  chimera_check:
    description: Tool(s) used for chimera checking, including version number and parameters,
      to discover and remove chimeric sequences. A chimeric sequence is comprised
      of two or more phylogenetically distinct parent sequences
    title: chimera check software
    examples:
      - value: uchime;v4.1;default parameters
    in_subset:
      - sequencing
    keywords:
      - software
    slot_uri: MIXS:0000052
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{software};{version};{parameters}$
      interpolated: true
      partial_match: true
  chloride:
    annotations:
      Preferred_unit: milligram per liter, parts per million
    description: Concentration of chloride in the sample
    title: chloride
    examples:
      - value: 5000 milligram per liter
    slot_uri: MIXS:0000429
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  chlorophyll:
    annotations:
      Preferred_unit: milligram per cubic meter, microgram per liter
    description: Concentration of chlorophyll
    title: chlorophyll
    examples:
      - value: 5 milligram per cubic meter
    slot_uri: MIXS:0000177
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  climate_environment:
    description: Treatment involving an exposure to a particular climate; treatment
      regimen including how many times the treatment was repeated, how long each treatment
      lasted, and the start and end time of the entire treatment; can include multiple
      climates
    title: climate environment
    examples:
      - value: tropical climate;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M
    keywords:
      - environment
    slot_uri: MIXS:0001040
    multivalued: true
    range: string
  coll_site_geo_feat:
    annotations:
      Expected_value: ENVO:00000002 or ENVO:00000070
    description: 'Text or terms that describe the geographic feature where the food
      sample was obtained by the researcher. This field accepts selected terms listed
      under the following ontologies: anthropogenic geographic feature (http://purl.obolibrary.org/obo/ENVO_00000002),
      for example agricultural fairground [ENVO:01000986]; garden [ENVO:00000011}
      or any of its subclasses; market [ENVO:01000987]; water well [ENVO:01000002];
      or human construction (http://purl.obolibrary.org/obo/ENVO_00000070)'
    title: collection site geographic feature
    examples:
      - value: farm [ENVO:00000078]
    keywords:
      - feature
      - geographic
      - site
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001183
    required: true
  collection_date:
    description: 'The time of sampling, either as an instance (single point in time)
      or interval. In case no exact time is available, the date/time can be right
      truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10;
      2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant'
    title: collection date
    examples:
      - value: '2013-03-25T12:42:31+01:00'
    in_subset:
      - environment
    keywords:
      - date
    slot_uri: MIXS:0000011
    range: datetime
    required: true
  compl_appr:
    annotations:
      Expected_value: text
    description: The approach used to determine the completeness of a given genomic
      assembly, which would typically make use of a set of conserved marker genes
      or a closely related reference genome. For UViG completeness, include reference
      genome or group used, and contig feature suggesting a complete genome
    title: completeness approach
    examples:
      - value: other
        description: was other <colon> UViG length compared to the average length of
          reference genomes from the P22virus genus (NCBI RefSeq v83)
    in_subset:
      - sequencing
    slot_uri: MIXS:0000071
    range: ComplApprEnum
  compl_score:
    annotations:
      Expected_value: quality;percent completeness
    description: 'Completeness score is typically based on either the fraction of
      markers found as compared to a database or the percent of a genome found as
      compared to a closely related reference genome. High Quality Draft: >90%, Medium
      Quality Draft: >50%, and Low Quality Draft: < 50% should have the indicated
      completeness scores'
    title: completeness score
    examples:
      - value: med;60%
    in_subset:
      - sequencing
    keywords:
      - score
    string_serialization: '[high|med|low];{percentage}'
    slot_uri: MIXS:0000069
  compl_software:
    annotations:
      Expected_value: names and versions of software(s) used
    description: Tools used for completion estimate, i.e. checkm, anvi'o, busco
    title: completeness software
    examples:
      - value: checkm
    in_subset:
      - sequencing
    keywords:
      - software
    string_serialization: '{software};{version}'
    slot_uri: MIXS:0000070
  conduc:
    annotations:
      Preferred_unit: milliSiemens per centimeter
    description: Electrical conductivity of water
    title: conductivity
    examples:
      - value: 10 milliSiemens per centimeter
    slot_uri: MIXS:0000692
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  cons_food_stor_dur:
    annotations:
      Preferred_unit: hours or days
    description: The storage duration of the food commodity by the consumer, prior
      to onset of illness or sample collection.  Indicate the timepoint written in
      ISO 8601 format
    title: food stored by consumer (storage duration)
    examples:
      - value: P5D
    keywords:
      - consumer
      - duration)
      - food
      - storage
    slot_uri: MIXS:0001195
    range: string
    pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$
    structured_pattern:
      syntax: ^{duration}$
      interpolated: true
      partial_match: true
  cons_food_stor_temp:
    annotations:
      Expected_value: text or measurement value
      Preferred_unit: degree Celsius
    description: Temperature at which food commodity was stored by the consumer, prior
      to onset of illness or sample collection
    title: food stored by consumer (storage temperature)
    examples:
      - value: 4 degree Celsius
    keywords:
      - consumer
      - food
      - storage
      - temperature
    string_serialization: '{float} {unit}|{text}'
    slot_uri: MIXS:0001196
  cons_purch_date:
    description: The date a food product was purchased by consumer
    title: purchase date
    examples:
      - value: '2013-03-25T12:42:31+01:00'
    keywords:
      - date
    slot_uri: MIXS:0001197
    range: datetime
  cons_qty_purchased:
    description: The quantity of food purchased by consumer
    title: quantity purchased
    examples:
      - value: 5 cans
    keywords:
      - quantity
    slot_uri: MIXS:0001198
    range: string
    pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{integer} {text}$
      interpolated: true
      partial_match: true
  contam_score:
    description: 'The contamination score is based on the fraction of single-copy
      genes that are observed more than once in a query genome. The following scores
      are acceptable for; High Quality Draft: < 5%, Medium Quality Draft: < 10%, Low
      Quality Draft: < 10%. Contamination must be below 5% for a SAG or MAG to be
      deposited into any of the public databases'
    title: contamination score
    examples:
      - value: '0.01'
    in_subset:
      - sequencing
    keywords:
      - score
    slot_uri: MIXS:0000072
    range: float
  contam_screen_input:
    description: The type of sequence data used as input
    title: contamination screening input
    examples:
      - value: contigs
    in_subset:
      - sequencing
    slot_uri: MIXS:0000005
    range: ContamScreenInputEnum
  contam_screen_param:
    annotations:
      Expected_value: enumeration;value or name
    description: Specific parameters used in the decontamination sofware, such as
      reference database, coverage, and kmers. Combinations of these parameters may
      also be used, i.e. kmer and coverage, or reference database and kmer
    title: contamination screening parameters
    examples:
      - value: kmer
    in_subset:
      - sequencing
    keywords:
      - parameter
    string_serialization: '[ref db|kmer|coverage|combination];{text|integer}'
    slot_uri: MIXS:0000073
  cool_syst_id:
    description: The cooling system identifier
    title: cooling system identifier
    examples:
      - value: '12345'
    keywords:
      - identifier
    slot_uri: MIXS:0000785
    range: integer
  crop_rotation:
    annotations:
      Expected_value: crop rotation status;schedule
    description: Whether or not crop is rotated, and if yes, rotation schedule
    title: history/crop rotation
    examples:
      - value: yes;R2/2017-01-01/2018-12-31/P6M
    keywords:
      - history
    slot_uri: MIXS:0000318
  crop_yield:
    annotations:
      Preferred_unit: kilogram per metre square
    description: Amount of crop produced per unit or area of land
    title: crop yield
    examples:
      - value: 570 kilogram per metre square
    keywords:
      - crop
    slot_uri: MIXS:0001116
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  cult_isol_date:
    description: The datetime marking the end of a process in which a sample yields
      a positive result for the target microbial analyte(s) in the form of an isolated
      colony or colonies
    title: culture isolation date
    examples:
      - value: '2018-05-11T10:00:00+01:00'
    keywords:
      - culture
      - date
      - isolation
    slot_uri: MIXS:0001181
    range: datetime
  cult_result:
    description: Any result of a bacterial culture experiment reported as a binary
      assessment such as positive/negative, active/inactive
    title: culture result
    examples:
      - value: positive
    keywords:
      - culture
    slot_uri: MIXS:0001117
    range: CultResultEnum
  cult_result_org:
    description: Taxonomic information about the cultured organism(s)
    title: culture result organism
    examples:
      - value: Listeria monocytogenes [NCIT:C86502]
    keywords:
      - culture
      - organism
    slot_uri: MIXS:0001118
    multivalued: true
    range: string
    pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$
    structured_pattern:
      syntax: ^({termLabel} \[{termID}\])|{integer}$
      interpolated: true
      partial_match: true
  cult_root_med:
    annotations:
      Expected_value: name, PMID,DOI or url
    description: Name or reference for the hydroponic or in vitro culture rooting
      medium; can be the name of a commonly used medium or reference to a specific
      medium, e.g. Murashige and Skoog medium. If the medium has not been formally
      published, use the rooting medium descriptors
    title: culture rooting medium
    examples:
      - value: http://himedialabs.com/TD/PT158.pdf
    keywords:
      - culture
    string_serialization: '{text}|{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0001041
  cult_target:
    annotations:
      Expected_value: NCIT:C14250 or NCBI taxid or culture independent
    description: The target microbial analyte in terms of investigation scope. This
      field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250).
      This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy
    title: culture target microbial analyte
    examples:
      - value: Listeria monocytogenes [NCIT:C86502]
    keywords:
      - culture
      - microbial
      - target
    string_serialization: '{termLabel} [{termID}]|{integer}'
    slot_uri: MIXS:0001119
    multivalued: true
  cur_land_use:
    annotations:
      Expected_value: enumeration
    description: Present state of sample site
    title: current land use
    examples:
      - value: conifers
    keywords:
      - land
      - use
    string_serialization: '[cities|farmstead|industrial areas|roads/railroads|rock|sand|gravel|mudflats|salt
      flats|badlands|permanent snow or ice|saline seeps|mines/quarries|oil waste areas|small
      grains|row crops|vegetable crops|horticultural plants (e.g. tulips)|marshlands
      (grass,sedges,rushes)|tundra (mosses,lichens)|rangeland|pastureland (grasslands
      used for livestock grazing)|hayland|meadows (grasses,alfalfa,fescue,bromegrass,timothy)|shrub
      land (e.g. mesquite,sage-brush,creosote bush,shrub oak,eucalyptus)|successional
      shrub land (tree saplings,hazels,sumacs,chokecherry,shrub dogwoods,blackberries)|shrub
      crops (blueberries,nursery ornamentals,filberts)|vine crops (grapes)|conifers
      (e.g. pine,spruce,fir,cypress)|hardwoods (e.g. oak,hickory,elm,aspen)|intermixed
      hardwood and conifers|tropical (e.g. mangrove,palms)|rainforest (evergreen forest
      receiving >406 cm annual rainfall)|swamp (permanent or semi-permanent water
      body dominated by woody plants)|crop trees (nuts,fruit,christmas trees,nursery
      trees)]'
    slot_uri: MIXS:0001080
  cur_vegetation:
    annotations:
      Expected_value: current vegetation type
    description: Vegetation classification from one or more standard classification
      systems, or agricultural crop
    title: current vegetation
    keywords:
      - vegetation
    range: string
    slot_uri: MIXS:0000312
  cur_vegetation_meth:
    description: Reference or method used in vegetation classification
    title: current vegetation method
    keywords:
      - method
      - vegetation
    slot_uri: MIXS:0000314
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  date_extr_weath:
    description: Date of unusual weather events that may have affected microbial populations.
      Multiple terms can be separated by pipes, listed in reverse chronological order
    title: extreme weather date
    examples:
      - value: '2013-03-25T12:42:31+01:00'
    keywords:
      - date
      - extreme
      - weather
    slot_uri: MIXS:0001142
    multivalued: true
    range: datetime
  date_last_rain:
    description: The date of the last time it rained
    title: date last rain
    examples:
      - value: '2013-03-25T12:42:31+01:00'
    keywords:
      - date
      - rain
    slot_uri: MIXS:0000786
    range: datetime
  decontam_software:
    annotations:
      Expected_value: enumeration
    description: Tool(s) used in contamination screening
    title: decontamination software
    examples:
      - value: anvi'o
    in_subset:
      - sequencing
    keywords:
      - software
    string_serialization: '[checkm/refinem|anvi''o|prodege|bbtools:decontaminate.sh|acdc|combination]'
    slot_uri: MIXS:0000074
  density:
    annotations:
      Preferred_unit: gram per cubic meter, gram per cubic centimeter
    description: Density of the sample, which is its mass per unit volume (aka volumetric
      mass density)
    title: density
    examples:
      - value: 1000 kilogram per cubic meter
    keywords:
      - density
    slot_uri: MIXS:0000435
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  depos_env:
    description: Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment).
      If "other" is specified, please propose entry in "additional info" field
    title: depositional environment
    keywords:
      - environment
    slot_uri: MIXS:0000992
    range: DeposEnvEnum
    recommended: true
  depth:
    annotations:
      Preferred_unit: meter
    description: The vertical distance below local surface. For sediment or soil samples
      depth is measured from sediment or soil surface, respectively. Depth can be
      reported as an interval for subsurface samples
    title: depth
    in_subset:
      - environment
    keywords:
      - depth
    slot_uri: MIXS:0000018
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  dermatology_disord:
    description: History of dermatology disorders; can include multiple disorders.
      The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org,
      skin disease (https://disease-ontology.org/?id=DOID:37)
    title: dermatology disorder
    keywords:
      - disorder
    slot_uri: MIXS:0000284
    multivalued: true
    range: string
  detec_type:
    annotations:
      Expected_value: enumeration
    description: Type of UViG detection
    title: detection type
    examples:
      - value: independent sequence (UViG)
    in_subset:
      - sequencing
    keywords:
      - type
    string_serialization: '[independent sequence (UViG)|provirus (UpViG)]'
    slot_uri: MIXS:0000084
  dew_point:
    annotations:
      Preferred_unit: degree Celsius
    description: The temperature to which a given parcel of humid air must be cooled,
      at constant barometric pressure, for water vapor to condense into water
    title: dew point
    examples:
      - value: 22 degree Celsius
    slot_uri: MIXS:0000129
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  diet_last_six_month:
    annotations:
      Expected_value: diet change;current diet
    description: Specification of major diet changes in the last six months, if yes
      the change should be specified
    title: major diet change in last six months
    examples:
      - value: yes;vegetarian diet
    keywords:
      - diet
      - months
    string_serialization: '{boolean};{text}'
    slot_uri: MIXS:0000266
  dietary_claim_use:
    annotations:
      Expected_value: FOODON:03510023
    description: These descriptors are used either for foods intended for special
      dietary use as defined in 21 CFR 105 or for foods that have special characteristics
      indicated in the name or labeling. This field accepts terms listed under dietary
      claim or use (http://purl.obolibrary.org/obo/FOODON_03510023). Multiple terms
      can be separated by one or more pipes, but please consider limiting this list
      to the most prominent dietary claim or use
    title: dietary claim or use
    examples:
      - value: No preservatives [FOODON:03510113]
    keywords:
      - diet
      - use
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001199
    multivalued: true
  diether_lipids:
    annotations:
      Expected_value: diether lipid name;measurement value
      Preferred_unit: nanogram per liter
    description: Concentration of diether lipids; can include multiple types of diether
      lipids
    title: diether lipids
    examples:
      - value: 0.2 nanogram per liter
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000178
    multivalued: true
  diss_carb_dioxide:
    annotations:
      Preferred_unit: micromole per liter, milligram per liter
    description: Concentration of dissolved carbon dioxide in the sample or liquid
      portion of the sample
    title: dissolved carbon dioxide
    examples:
      - value: 5 milligram per liter
    keywords:
      - carbon
      - dissolved
    slot_uri: MIXS:0000436
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  diss_hydrogen:
    annotations:
      Preferred_unit: micromole per liter
    description: Concentration of dissolved hydrogen
    title: dissolved hydrogen
    examples:
      - value: 0.3 micromole per liter
    keywords:
      - dissolved
    slot_uri: MIXS:0000179
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  diss_inorg_carb:
    annotations:
      Preferred_unit: microgram per liter, milligram per liter, parts per million
    description: Dissolved inorganic carbon concentration in the sample, typically
      measured after filtering the sample using a 0.45 micrometer filter
    title: dissolved inorganic carbon
    examples:
      - value: 2059 micromole per kilogram
    keywords:
      - carbon
      - dissolved
      - inorganic
    slot_uri: MIXS:0000434
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  diss_inorg_nitro:
    annotations:
      Preferred_unit: microgram per liter, micromole per liter
    description: Concentration of dissolved inorganic nitrogen
    title: dissolved inorganic nitrogen
    examples:
      - value: 761 micromole per liter
    keywords:
      - dissolved
      - inorganic
      - nitrogen
    slot_uri: MIXS:0000698
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  diss_inorg_phosp:
    description: Concentration of dissolved inorganic phosphorus in the sample
    title: dissolved inorganic phosphorus
    examples:
      - value: 56.5 micromole per liter
    keywords:
      - dissolved
      - inorganic
      - phosphorus
    slot_uri: MIXS:0000106
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  diss_iron:
    annotations:
      Preferred_unit: milligram per liter
    description: Concentration of dissolved iron in the sample
    title: dissolved iron
    keywords:
      - dissolved
    slot_uri: MIXS:0000139
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  diss_org_carb:
    annotations:
      Preferred_unit: micromole per liter, milligram per liter
    description: Concentration of dissolved organic carbon in the sample, liquid portion
      of the sample, or aqueous phase of the fluid
    title: dissolved organic carbon
    examples:
      - value: 197 micromole per liter
    keywords:
      - carbon
      - dissolved
      - organic
    slot_uri: MIXS:0000433
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  diss_org_nitro:
    description: Dissolved organic nitrogen concentration measured as; total dissolved
      nitrogen - NH4 - NO3 - NO2
    title: dissolved organic nitrogen
    examples:
      - value: 0.05 micromole per liter
    keywords:
      - dissolved
      - nitrogen
      - organic
    slot_uri: MIXS:0000162
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  diss_oxygen:
    annotations:
      Preferred_unit: micromole per kilogram, milligram per liter
    description: Concentration of dissolved oxygen
    title: dissolved oxygen
    examples:
      - value: 175 micromole per kilogram
    keywords:
      - dissolved
      - oxygen
    slot_uri: MIXS:0000119
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  diss_oxygen_fluid:
    annotations:
      Preferred_unit: micromole per kilogram, milligram per liter
    description: Concentration of dissolved oxygen in the oil field produced fluids
      as it contributes to oxgen-corrosion and microbial activity (e.g. Mic)
    title: dissolved oxygen in fluids
    keywords:
      - dissolved
      - oxygen
    slot_uri: MIXS:0000438
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  dominant_hand:
    description: Dominant hand of the subject
    title: dominant hand
    examples:
      - value: right
    slot_uri: MIXS:0000944
    range: DominantHandEnum
  door_comp_type:
    description: The composite type of the door
    title: door type, composite
    examples:
      - value: revolving
    keywords:
      - door
      - type
    slot_uri: MIXS:0000795
    range: DoorCompTypeEnum
  door_cond:
    description: The phsical condition of the door
    title: door condition
    examples:
      - value: new
    keywords:
      - condition
      - door
    slot_uri: MIXS:0000788
    range: DamagedRupturedEnum
  door_direct:
    description: The direction the door opens
    title: door direction of opening
    examples:
      - value: inward
    keywords:
      - direction
      - door
    slot_uri: MIXS:0000789
    range: DoorDirectEnum
  door_loc:
    description: The relative location of the door in the room
    title: door location
    examples:
      - value: north
    keywords:
      - door
      - location
    slot_uri: MIXS:0000790
    range: CompassDirections8Enum
  door_mat:
    description: The material the door is composed of
    title: door material
    examples:
      - value: wood
    keywords:
      - door
      - material
    slot_uri: MIXS:0000791
    range: DoorMatEnum
  door_move:
    description: The type of movement of the door
    title: door movement
    examples:
      - value: swinging
    keywords:
      - door
    slot_uri: MIXS:0000792
    range: DoorMoveEnum
  door_size:
    annotations:
      Preferred_unit: square meter
    description: The size of the door
    title: door area or size
    examples:
      - value: 2.5 square meter
    keywords:
      - area
      - door
      - size
    slot_uri: MIXS:0000158
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  door_type:
    description: The type of door material
    title: door type
    examples:
      - value: wooden
    keywords:
      - door
      - type
    slot_uri: MIXS:0000794
    range: DoorTypeEnum
  door_type_metal:
    description: The type of metal door
    title: door type, metal
    examples:
      - value: hollow
    keywords:
      - door
      - type
    slot_uri: MIXS:0000796
    range: DoorTypeMetalEnum
  door_type_wood:
    annotations:
      Expected_value: enumeration
    description: The type of wood door
    title: door type, wood
    examples:
      - value: battened
    keywords:
      - door
      - type
    string_serialization: '[bettened and ledged|battened|ledged and braced|battened|ledged
      and framed|battened|ledged, braced and frame|framed and paneled|glashed or sash|flush|louvered|wire
      gauged]'
    slot_uri: MIXS:0000797
  door_water_mold:
    description: Signs of the presence of mold or mildew on a door
    title: door signs of water/mold
    examples:
      - value: presence of mold visible
    keywords:
      - door
    slot_uri: MIXS:0000793
    range: MoldVisibilityEnum
  douche:
    description: Date of most recent douche
    title: douche
    examples:
      - value: '2013-03-25T12:42:31+01:00'
    slot_uri: MIXS:0000967
    range: datetime
  down_par:
    annotations:
      Preferred_unit: microEinstein per square meter per second, microEinstein per square
        centimeter per second
    description: Visible waveband radiance and irradiance measurements in the water
      column
    title: downward PAR
    examples:
      - value: 28.71 microEinstein per square meter per second
    slot_uri: MIXS:0000703
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  drainage_class:
    description: Drainage classification from a standard system such as the USDA system
    title: drainage classification
    examples:
      - value: well
    keywords:
      - classification
    slot_uri: MIXS:0001085
    range: DrainageClassEnum
  drawings:
    description: The buildings architectural drawings; if design is chosen, indicate
      phase-conceptual, schematic, design development, and construction documents
    title: drawings
    examples:
      - value: sketch
    keywords:
      - drawings
    slot_uri: MIXS:0000798
    range: DrawingsEnum
  drug_usage:
    annotations:
      Expected_value: drug name;frequency
    description: Any drug used by subject and the frequency of usage; can include
      multiple drugs used
    title: drug usage
    examples:
      - value: Lipitor;2/day
    keywords:
      - drug
      - use
    string_serialization: '{text};{integer}/[year|month|week|day|hour]'
    slot_uri: MIXS:0000894
    multivalued: true
  efficiency_percent:
    annotations:
      Preferred_unit: micromole per liter
    description: Percentage of volatile solids removed from the anaerobic digestor
    title: efficiency percent
    keywords:
      - percent
    slot_uri: MIXS:0000657
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  elev:
    annotations:
      Preferred_unit: meter
    description: Elevation of the sampling site is its height above a fixed reference
      point, most commonly the mean sea level. Elevation is mainly used when referring
      to points on the earth's surface, while altitude is used for points above the
      surface, such as an aircraft in flight or a spacecraft in orbit
    title: elevation
    examples:
      - value: 100 meter
    in_subset:
      - environment
    keywords:
      - elevation
    slot_uri: MIXS:0000093
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  elevator:
    description: The number of elevators within the built structure
    title: elevator count
    examples:
      - value: '2'
    keywords:
      - count
    slot_uri: MIXS:0000799
    range: integer
  emulsions:
    annotations:
      Expected_value: emulsion name;measurement value
      Preferred_unit: gram per liter
    description: Amount or concentration of substances such as paints, adhesives,
      mayonnaise, hair colorants, emulsified oils, etc.; can include multiple emulsion
      types
    title: emulsions
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000660
    multivalued: true
  encoded_traits:
    annotations:
      Expected_value: 'for plasmid: antibiotic resistance; for phage: converting genes'
    description: Should include key traits like antibiotic resistance or xenobiotic
      degradation phenotypes for plasmids, converting genes for phage
    title: encoded traits
    examples:
      - value: beta-lactamase class A
    in_subset:
      - nucleic acid sequence source
    range: string
    slot_uri: MIXS:0000034
  enrichment_protocol:
    description: The microbiological workflow or protocol followed to test for the
      presence or enumeration of the target microbial analyte(s). Please provide a
      PubMed or DOI reference for published protocols
    title: enrichment protocol
    examples:
      - value: 'BAM Chapter 4: Enumeration of Escherichia coli and the Coliform Bacteria'
    keywords:
      - enrichment
      - protocol
    slot_uri: MIXS:0001177
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}|{text}$
      interpolated: true
      partial_match: true
  env_broad_scale:
    description: 'Report the major environmental system the sample or specimen came
      from. The system(s) identified should have a coarse spatial grain, to provide
      the general environmental context of where the sampling was done (e.g. in the
      desert or a rainforest). We recommend using subclasses of EnvO s biome class:  http://purl.obolibrary.org/obo/ENVO_00000428.
      EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
    title: broad-scale environmental context
    examples:
      - value: rangeland biome [ENVO:01000247]
    in_subset:
      - environment
    keywords:
      - context
      - environmental
    slot_uri: MIXS:0000012
    range: string
    required: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  env_local_scale:
    annotations:
      Expected_value: Environmental entities having causal influences upon the entity at
        time of sampling
    description: 'Report the entity or entities which are in the sample or specimen
      s local vicinity and which you believe have significant causal influences on
      your sample or specimen. We recommend using EnvO terms which are of smaller
      spatial grain than your entry for env_broad_scale. Terms, such as anatomical
      sites, from other OBO Library ontologies which interoperate with EnvO (e.g.
      UBERON) are accepted in this field. EnvO documentation about how to use the
      field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
    title: local environmental context
    examples:
      - value: hillside [ENVO:01000333]
    in_subset:
      - environment
    keywords:
      - context
      - environmental
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
    slot_uri: MIXS:0000013
    required: true
  env_medium:
    description: 'Report the environmental material(s) immediately surrounding the
      sample or specimen at the time of sampling. We recommend using subclasses of
      ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO
      documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
      . Terms from other OBO ontologies are permissible as long as they reference
      mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
      (e.g. a tree, a leaf, a table top)'
    title: environmental medium
    examples:
      - value: bluegrass field soil [ENVO:00005789]
    in_subset:
      - environment
    keywords:
      - environmental
    slot_uri: MIXS:0000014
    range: string
    required: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  env_monitoring_zone:
    annotations:
      Expected_value: ENVO
    description: An environmental monitoring zone is a formal designation as part
      of an environmental monitoring program, in which areas of a food production
      facility are categorized, commonly as zones 1-4, based on likelihood or risk
      of foodborne pathogen contamination. This field accepts terms listed under food
      production environmental monitoring zone (http://purl.obolibrary.org/obo/ENVO).
      Please add a term to indicate the environmental monitoring zone the sample was
      taken from
    title: food production environmental monitoring zone
    examples:
      - value: Zone 1
    keywords:
      - environmental
      - food
      - production
    range: string
    slot_uri: MIXS:0001254
  escalator:
    description: The number of escalators within the built structure
    title: escalator count
    examples:
      - value: '4'
    keywords:
      - count
    slot_uri: MIXS:0000800
    range: integer
  estimated_size:
    annotations:
      Expected_value: number of base pairs
    description: The estimated size of the genome prior to sequencing. Of particular
      importance in the sequencing of (eukaryotic) genome which could remain in draft
      form for a long or unspecified period
    title: estimated size
    examples:
      - value: 300000 bp
    in_subset:
      - nucleic acid sequence source
    keywords:
      - size
    string_serialization: '{integer} bp'
    slot_uri: MIXS:0000024
  ethnicity:
    annotations:
      Expected_value: text recommend from Wikipedia list
    description: A category of people who identify with each other, usually on the
      basis of presumed similarities such as a common language, ancestry, history,
      society, culture, nation or social treatment within their residing area. https://en.wikipedia.org/wiki/List_of_contemporary_ethnic_groups
    title: ethnicity
    examples:
      - value: native american
    range: string
    slot_uri: MIXS:0000895
    multivalued: true
  ethylbenzene:
    annotations:
      Preferred_unit: milligram per liter, parts per million
    description: Concentration of ethylbenzene in the sample
    title: ethylbenzene
    slot_uri: MIXS:0000155
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  exp_duct:
    annotations:
      Preferred_unit: square meter
    description: The amount of exposed ductwork in the room
    title: exposed ductwork
    slot_uri: MIXS:0000144
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  exp_pipe:
    description: The number of exposed pipes in the room
    title: exposed pipes
    keywords:
      - pipes
    slot_uri: MIXS:0000220
    range: string
    pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{integer} {text}$
      interpolated: true
      partial_match: true
  experimental_factor:
    annotations:
      Expected_value: text or EFO and/or OBI
    description: Variable aspects of an experiment design that can be used to describe
      an experiment, or set of experiments, in an increasingly detailed manner. This
      field accepts ontology terms from Experimental Factor Ontology (EFO) and/or
      Ontology for Biomedical Investigations (OBI)
    title: experimental factor
    examples:
      - value: time series design [EFO:0001779]
    in_subset:
      - investigation
    keywords:
      - experimental
      - factor
    string_serialization: '{termLabel} [{termID}]|{text}'
    slot_uri: MIXS:0000008
    multivalued: true
    range: string
    pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$
  ext_door:
    description: The number of exterior doors in the built structure
    title: exterior door count
    keywords:
      - count
      - door
      - exterior
    slot_uri: MIXS:0000170
    range: integer
  ext_wall_orient:
    description: The orientation of the exterior wall
    title: orientations of exterior wall
    examples:
      - value: northwest
    keywords:
      - exterior
      - wall
    slot_uri: MIXS:0000817
    range: CompassDirections8Enum
  ext_window_orient:
    description: The compass direction the exterior window of the room is facing
    title: orientations of exterior window
    examples:
      - value: southwest
    keywords:
      - exterior
      - window
    slot_uri: MIXS:0000818
    range: CompassDirections8Enum
  extr_weather_event:
    description: Unusual weather events that may have affected microbial populations.
      Multiple terms can be separated by pipes, listed in reverse chronological order
    title: extreme weather event
    examples:
      - value: hail
    keywords:
      - event
      - extreme
      - weather
    slot_uri: MIXS:0001141
    multivalued: true
    range: ExtrWeatherEventEnum
  extrachrom_elements:
    description: Do plasmids exist of significant phenotypic consequence (e.g. ones
      that determine virulence or antibiotic resistance). Megaplasmids? Other plasmids
      (borrelia has 15+ plasmids)
    title: extrachromosomal elements
    examples:
      - value: '5'
    in_subset:
      - nucleic acid sequence source
    slot_uri: MIXS:0000023
    range: integer
  extreme_event:
    description: Unusual physical events that may have affected microbial populations
    title: history/extreme events
    keywords:
      - event
      - history
    slot_uri: MIXS:0000320
    range: datetime
  facility_type:
    description: Establishment details about the type of facility where the sample
      was taken. This is independent of the specific product(s) within the facility
    title: facility type
    examples:
      - value: manufacturing-processing
    keywords:
      - facility
      - type
    slot_uri: MIXS:0001252
    multivalued: true
    range: FacilityTypeEnum
  fao_class:
    description: Soil classification from the FAO World soil distribution from International Soil Reference and Information Centre (ISRIC). The list of available soil classifications can be found at https://www.isric.org/explore/world-soil-distribution
    title: soil_taxonomic/FAO classification
    examples:
      - value: Luvisols
    keywords:
      - classification
    slot_uri: MIXS:0001083
    range: FaoClassEnum
  farm_equip:
    description: List of equipment used for planting, fertilization, harvesting, irrigation,
      land levelling, residue management, weeding or transplanting during the growing
      season.  This field accepts terms listed under agricultural implement (http://purl.obolibrary.org/obo/AGRO_00000416).
      Multiple terms can be separated by pipes
    title: farm equipment used
    examples:
      - value: combine harvester [AGRO:00000473]
    keywords:
      - equipment
      - farm
      - use
    slot_uri: MIXS:0001126
    multivalued: true
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  farm_equip_san:
    annotations:
      Expected_value: text or commercial name of sanitizer or class of sanitizer or active
        ingredient in sanitizer
      Preferred_unit: parts per million
    description: Method used to sanitize growing and harvesting equipment. This can
      including type and concentration of sanitizing solution.  Multiple terms can
      be separated by one or more pipes
    title: farm equipment sanitization
    examples:
      - value: hot water pressure wash, hypochlorite solution, 50 parts per million
    keywords:
      - equipment
      - farm
    string_serialization: '{text} {float} {unit}'
    slot_uri: MIXS:0001124
    multivalued: true
  farm_equip_san_freq:
    description: The number of times farm equipment is cleaned. Frequency of cleaning
      might be on a Daily basis, Weekly, Monthly, Quarterly or Annually
    title: farm equipment sanitization frequency
    examples:
      - value: Biweekly
    keywords:
      - equipment
      - farm
      - frequency
    slot_uri: MIXS:0001125
    range: string
  farm_equip_shared:
    description: List of planting, growing or harvesting equipment shared with other
      farms. This field accepts terms listed under agricultural implement (http://purl.obolibrary.org/obo/AGRO_00000416).
      Multiple terms can be separated by pipes
    title: equipment shared with other farms
    examples:
      - value: combine harvester [AGRO:00000473]
    keywords:
      - equipment
      - farm
    slot_uri: MIXS:0001123
    multivalued: true
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  farm_water_source:
    description: Source of water used on the farm for irrigation of crops or watering
      of livestock
    title: farm watering water source
    examples:
      - value: well
        description: was water well (ENVO:01000002)
    keywords:
      - farm
      - source
      - water
    slot_uri: MIXS:0001110
    range: FarmWaterSourceEnum
    recommended: true
  feat_pred:
    description: Method used to predict UViGs features such as ORFs, integration site,
      etc
    title: feature prediction
    examples:
      - value: Prodigal;2.6.3;default parameters
    in_subset:
      - sequencing
    keywords:
      - feature
      - predict
    slot_uri: MIXS:0000061
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{software};{version};{parameters}$
      interpolated: true
      partial_match: true
  ferm_chem_add:
    annotations:
      Expected_value: chemical ingredient
    description: Any chemicals that are added to the fermentation process to achieve
      the desired final product
    title: fermentation chemical additives
    examples:
      - value: salt
    keywords:
      - fermentation
    string_serialization: '{float} {unit}'
    slot_uri: MIXS:0001185
    multivalued: true
    recommended: true
  ferm_chem_add_perc:
    annotations:
      Preferred_unit: percentage
    description: The amount of chemical added to the fermentation process
    title: fermentation chemical additives percentage
    examples:
      - value: '0.01'
    keywords:
      - fermentation
      - percent
    slot_uri: MIXS:0001186
    multivalued: true
    range: float
    recommended: true
  ferm_headspace_oxy:
    annotations:
      Preferred_unit: percentage
    description: The amount of headspace oxygen in a fermentation vessel
    title: fermentation headspace oxygen
    examples:
      - value: '0.05'
    keywords:
      - fermentation
      - oxygen
    slot_uri: MIXS:0001187
    range: float
    recommended: true
  ferm_medium:
    description: The growth medium used for the fermented food fermentation process,
      which supplies the required nutrients.  Usually this includes a carbon and nitrogen
      source, water, micronutrients and chemical additives
    title: fermentation medium
    examples:
      - value: molasses
    keywords:
      - fermentation
    slot_uri: MIXS:0001188
    range: string
    recommended: true
  ferm_pH:
    description: The pH of the fermented food fermentation process
    title: fermentation pH
    examples:
      - value: '4.5'
    keywords:
      - fermentation
      - ph
    slot_uri: MIXS:0001189
    range: float
    recommended: true
  ferm_rel_humidity:
    annotations:
      Preferred_unit: percentage
    description: The relative humidity of the fermented food fermentation process
    title: fermentation relative humidity
    comments:
      - percent or float?
    examples:
      - value: 95%
    keywords:
      - fermentation
      - humidity
      - relative
    slot_uri: MIXS:0001190
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  ferm_temp:
    annotations:
      Preferred_unit: degree Celsius
    description: The temperature of the fermented food fermentation process
    title: fermentation temperature
    examples:
      - value: 22 degrees Celsius
    keywords:
      - fermentation
      - temperature
    slot_uri: MIXS:0001191
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  ferm_time:
    annotations:
      Preferred_unit: days
    description: The time duration of the fermented food fermentation process
    title: fermentation time
    examples:
      - value: P10D
    keywords:
      - fermentation
      - time
    slot_uri: MIXS:0001192
    range: string
    recommended: true
    pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$
    structured_pattern:
      syntax: ^{duration}$
      interpolated: true
      partial_match: true
  ferm_vessel:
    description: The type of vessel used for containment of the fermentation
    title: fermentation vessel
    examples:
      - value: steel drum
    keywords:
      - fermentation
    slot_uri: MIXS:0001193
    range: string
    recommended: true
  fertilizer_admin:
    description: Type of fertilizer or amendment added to the soil or water for the
      purpose of improving substrate health and quality for plant growth. This field
      accepts terms listed under agronomic fertilizer (http://purl.obolibrary.org/obo/AGRO_00002062).
      Multiple terms may apply and can be separated by pipes, listing in reverse chronological
      order
    title: fertilizer administration
    examples:
      - value: fish emulsion [AGRO:00000082]
    keywords:
      - administration
    slot_uri: MIXS:0001127
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  fertilizer_date:
    description: Date of administration of soil amendment or fertilizer. Multiple
      terms may apply and can be separated by pipes, listing in reverse chronological
      order
    title: fertilizer administration date
    examples:
      - value: '2018-05-11T10:00:00+01:00'
    keywords:
      - administration
      - date
    slot_uri: MIXS:0001128
    range: datetime
  fertilizer_regm:
    annotations:
      Expected_value: fertilizer name;fertilizer amount;treatment interval and duration
      Preferred_unit: gram, mole per liter, milligram per liter
    description: Information about treatment involving the use of fertilizers; should
      include the name of fertilizer, amount administered, treatment regimen including
      how many times the treatment was repeated, how long each treatment lasted, and
      the start and end time of the entire treatment; can include multiple fertilizer
      regimens
    title: fertilizer regimen
    examples:
      - value: urea;0.6 milligram per liter;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M
    keywords:
      - regimen
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000556
    multivalued: true
  field:
    description: Name of the hydrocarbon field (e.g. Albacora)
    title: field name
    slot_uri: MIXS:0000291
    range: string
    recommended: true
  filter_type:
    description: A device which removes solid particulates or airborne molecular contaminants
    title: filter type
    examples:
      - value: HEPA
    keywords:
      - filter
      - type
    slot_uri: MIXS:0000765
    multivalued: true
    range: FilterTypeEnum
    required: true
  fire:
    description: Historical and/or physical evidence of fire
    title: history/fire
    keywords:
      - history
    slot_uri: MIXS:0001086
    range: datetime
  fireplace_type:
    description: A firebox with chimney
    title: fireplace type
    examples:
      - value: wood burning
    keywords:
      - type
    slot_uri: MIXS:0000802
    range: FireplaceTypeEnum
  flooding:
    description: Historical and/or physical evidence of flooding
    title: history/flooding
    keywords:
      - history
    slot_uri: MIXS:0000319
    range: datetime
  floor_age:
    annotations:
      Preferred_unit: years, weeks, days
    description: The time period since installment of the carpet or flooring
    title: floor age
    keywords:
      - age
      - floor
    slot_uri: MIXS:0000164
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  floor_area:
    annotations:
      Preferred_unit: square meter
    description: The area of the floor space within the room
    title: floor area
    keywords:
      - area
      - floor
    slot_uri: MIXS:0000165
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  floor_cond:
    description: The physical condition of the floor at the time of sampling; photos
      or video preferred; use drawings to indicate location of damaged areas
    title: floor condition
    examples:
      - value: new
    keywords:
      - condition
      - floor
    slot_uri: MIXS:0000803
    range: DamagedEnum
  floor_count:
    description: The number of floors in the building, including basements and mechanical
      penthouse
    title: floor count
    keywords:
      - count
      - floor
    slot_uri: MIXS:0000225
    range: integer
  floor_finish_mat:
    annotations:
      Expected_value: enumeration
    description: The floor covering type; the finished surface that is walked on
    title: floor finish material
    examples:
      - value: carpet
    keywords:
      - floor
      - material
    string_serialization: '[tile|wood strip or parquet|carpet|rug|laminate wood|lineoleum|vinyl
      composition tile|sheet vinyl|stone|bamboo|cork|terrazo|concrete|none;specify
      unfinished|sealed|clear finish|paint]'
    slot_uri: MIXS:0000804
  floor_struc:
    description: Refers to the structural elements and subfloor upon which the finish
      flooring is installed
    title: floor structure
    examples:
      - value: concrete
    keywords:
      - floor
    slot_uri: MIXS:0000806
    range: FloorStrucEnum
  floor_thermal_mass:
    annotations:
      Preferred_unit: joule per degree Celsius
    description: The ability of the floor to provide inertia against temperature fluctuations
    title: floor thermal mass
    keywords:
      - floor
      - mass
    slot_uri: MIXS:0000166
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  floor_water_mold:
    description: Signs of the presence of mold or mildew in a room
    title: floor signs of water/mold
    examples:
      - value: ceiling discoloration
    keywords:
      - floor
    slot_uri: MIXS:0000805
    range: FloorWaterMoldEnum
  fluor:
    annotations:
      Preferred_unit: milligram chlorophyll a per cubic meter, volts
    description: Raw or converted fluorescence of water
    title: fluorescence
    examples:
      - value: 2.5 volts
    slot_uri: MIXS:0000704
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  foetal_health_stat:
    description: Specification of foetal health status, should also include abortion
    title: amniotic fluid/foetal health status
    keywords:
      - status
    slot_uri: MIXS:0000275
    range: string
  food_additive:
    annotations:
      Expected_value: FOODON:03412972
    description: A substance or substances added to food to maintain or improve safety
      and freshness, to improve or maintain nutritional value, or improve taste, texture
      and appearance.  This field accepts terms listed under food additive (http://purl.obolibrary.org/obo/FOODON_03412972).
      Multiple terms can be separated by one or more pipes, but please consider limiting
      this list to the top 5 ingredients listed in order as on the food label.  See
      also, https://www.fda.gov/food/food-ingredients-packaging/overview-food-ingredients-additives-colors
    title: food additive
    examples:
      - value: xanthan gum [FOODON:03413321]
    keywords:
      - food
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001200
    multivalued: true
  food_allergen_label:
    annotations:
      Expected_value: FOODON:03510213
    description: A label indication that the product contains a recognized allergen.
      This field accepts terms listed under dietary claim or use (http://purl.obolibrary.org/obo/FOODON_03510213)
    title: food allergen labeling
    examples:
      - value: food allergen labelling about crustaceans and products thereof [FOODON:03510215]
    keywords:
      - food
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001201
    multivalued: true
  food_clean_proc:
    description: The process of cleaning food to separate other environmental materials
      from the food source. Multiple terms can be separated by pipes
    title: food cleaning process
    examples:
      - value: rinsed with water
        description: was rinsed with water|scrubbed with brush
      - value: scrubbed with brush
        description: was rinsed with water|scrubbed with brush
    keywords:
      - food
      - process
    slot_uri: MIXS:0001182
    range: FoodCleanProcEnum
  food_contact_surf:
    annotations:
      Expected_value: FOODON:03500010
    description: The specific container or coating materials in direct contact with
      the food. Multiple values can be assigned.  This field accepts terms listed
      under food contact surface (http://purl.obolibrary.org/obo/FOODON_03500010)
    title: food contact surface
    examples:
      - value: cellulose acetate [FOODON:03500034]
    keywords:
      - food
      - surface
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001131
    multivalued: true
  food_contain_wrap:
    annotations:
      Expected_value: FOODON:03490100
    description: Type of container or wrapping defined by the main container material,
      the container form, and the material of the liner lids or ends. Also type of
      container or wrapping by form; prefer description by material first, then by
      form. This field accepts terms listed under food container or wrapping (http://purl.obolibrary.org/obo/FOODON_03490100)
    title: food container or wrapping
    examples:
      - value: Plastic shrink-pack [FOODON:03490137]
    keywords:
      - food
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001132
  food_cooking_proc:
    annotations:
      Expected_value: FOODON:03450002
    description: The transformation of raw food by the application of heat. This field
      accepts terms listed under food cooking (http://purl.obolibrary.org/obo/FOODON_03450002)
    title: food cooking process
    examples:
      - value: food blanching [FOODON:03470175]
    keywords:
      - food
      - process
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001202
    multivalued: true
  food_dis_point:
    description: 'A reference to a place on the Earth, by its name or by its geographical
      location that refers to a distribution point along the food chain. This field
      accepts terms listed under geographic location (http://purl.obolibrary.org/obo/GAZ_00000448).
      Reference: Adam Diamond, James Barham. Moving Food Along the Value Chain: Innovations
      in Regional Food Distribution. U.S. Dept. of Agriculture, Agricultural Marketing
      Service. Washington, DC. March 2012. http://dx.doi.org/10.9752/MS045.03-2012'
    title: food distribution point geographic location
    examples:
      - value: 'USA: Delmarva, Peninsula'
    keywords:
      - food
      - geographic
      - location
    slot_uri: MIXS:0001203
    multivalued: true
    range: string
    pattern: '^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$'
    structured_pattern:
      syntax: '^{text}: {text}, {text}$'
      interpolated: true
      partial_match: true
  food_dis_point_city:
    annotations:
      Expected_value: GAZ:00000448
    description: 'A reference to a place on the Earth, by its name or by its geographical
      location that refers to a distribution point along the food chain. This field
      accepts terms listed under geographic location (http://purl.obolibrary.org/obo/GAZ_00000448).
      Reference: Adam Diamond, James Barham. Moving Food Along the Value Chain: Innovations
      in Regional Food Distribution. U.S. Dept. of Agriculture, Agricultural Marketing
      Service. Washington, DC. March 2012. http://dx.doi.org/10.9752/MS045.03-2012'
    title: food distribution point geographic location (city)
    examples:
      - value: Atlanta[GAZ:00004445]
    keywords:
      - food
      - geographic
      - location
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001204
    multivalued: true
  food_harvest_proc:
    description: A harvesting process is a process which takes in some food material
      from an individual or community of plant or animal organisms in a given context
      and time, and outputs a precursor or consumable food product. This may include
      a part of an organism or the whole, and may involve killing the organism
    title: Food harvesting process
    examples:
      - value: hand-picked
    keywords:
      - food
      - process
    slot_uri: MIXS:0001133
    multivalued: true
    range: string
  food_ingredient:
    annotations:
      Expected_value: FOODON
    description: In this field, please list individual ingredients for multi-component
      food [FOODON:00002501] and simple foods that is not captured in food_type.  Please
      use terms that are present in FoodOn.  Multiple terms can be separated by one
      or more pipes |, but please consider limiting this list to the top 5 ingredients
      listed in order as on the food label.  See also, https://www.fda.gov/food/food-ingredients-packaging/overview-food-ingredients-additives-colors
    title: food ingredient
    examples:
      - value: bean (whole) [FOODON:00002753]
    keywords:
      - food
      - ingredient
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001205
    multivalued: true
  food_name_status:
    description: A datum indicating that use of a food product name is regulated in
      some legal jurisdiction. This field accepts terms listed under food product
      name legal status (http://purl.obolibrary.org/obo/FOODON_03530087)
    title: food product name legal status
    examples:
      - value: protected geographic indication [FOODON:03530256]
    keywords:
      - food
      - product
      - status
    slot_uri: MIXS:0001206
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  food_origin:
    description: A reference to a place on the Earth, by its name or by its geographical
      location that describes the origin of the food commodity, either in terms of
      its cultivation or production. This field accepts terms listed under geographic
      location (http://purl.obolibrary.org/obo/GAZ_00000448)
    title: food product origin geographic location
    examples:
      - value: 'USA: Delmarva, Peninsula'
    keywords:
      - food
      - geographic
      - location
      - product
    slot_uri: MIXS:0001207
    range: string
    pattern: '^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$'
    structured_pattern:
      syntax: '^{text}: {text}, {text}$'
      interpolated: true
      partial_match: true
  food_pack_capacity:
    annotations:
      Preferred_unit: grams
    description: The maximum number of product units within a package
    title: food package capacity
    examples:
      - value: 454 grams
    keywords:
      - food
      - package
    slot_uri: MIXS:0001208
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  food_pack_integrity:
    annotations:
      Expected_value: FOODON:03530218
    description: A term label and term id to describe the state of the packing material
      and text to explain the exact condition.  This field accepts terms listed under
      food packing medium integrity (http://purl.obolibrary.org/obo/FOODON_03530218)
    title: food packing medium integrity
    examples:
      - value: food packing medium compromised [FOODON:00002517]
    keywords:
      - food
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001209
    multivalued: true
  food_pack_medium:
    annotations:
      Expected_value: FOODON:03480020
    description: The medium in which the food is packed for preservation and handling
      or the medium surrounding homemade foods, e.g., peaches cooked in sugar syrup.
      The packing medium may provide a controlled environment for the food. It may
      also serve to improve palatability and consumer appeal.  This includes edible
      packing media (e.g. fruit juice), gas other than air (e.g. carbon dioxide),
      vacuum packed, or packed with aerosol propellant. This field accepts terms under
      food packing medium (http://purl.obolibrary.org/obo/FOODON_03480020). Multiple
      terms may apply and can be separated by pipes
    title: food packing medium
    keywords:
      - food
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001134
    multivalued: true
  food_preserv_proc:
    annotations:
      Expected_value: FOODON:03470107
    description: The methods contributing to the prevention or retardation of microbial,
      enzymatic or oxidative spoilage and thus to the extension of shelf life. This
      field accepts terms listed under food preservation process (http://purl.obolibrary.org/obo/FOODON_03470107)
    title: food preservation process
    examples:
      - value: food slow freezing [FOODON:03470128]
    keywords:
      - food
      - process
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001135
    multivalued: true
  food_prior_contact:
    annotations:
      Expected_value: FOODON:03530077
    description: The material the food contacted (e.g., was processed in) prior to
      packaging. This field accepts terms listed under material of contact prior to
      food packaging (http://purl.obolibrary.org/obo/FOODON_03530077). If the proper
      descriptor is not listed please use text to describe the material of contact
      prior to food packaging
    title: material of contact prior to food packaging
    examples:
      - value: processed in stainless steel container [FOODON:03530081]
    keywords:
      - food
      - material
      - prior
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001210
    multivalued: true
  food_prod:
    description: Descriptors of the food production system or of the agricultural
      environment and growing conditions related to the farm production system, such
      as wild caught, organic, free-range, industrial, dairy, beef,  domestic or cultivated
      food production. This field accepts terms listed under food production (http://purl.obolibrary.org/obo/FOODON_03530206).
      Multiple terms may apply and can be separated by pipes
    title: food production system characteristics
    examples:
      - value: organic plant cultivation [FOODON:03530253]
    keywords:
      - food
      - production
    slot_uri: MIXS:0001211
    multivalued: true
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  food_prod_char:
    description: Descriptors of the food production system such as wild caught, free-range,
      organic, free-range, industrial, dairy, beef
    title: food production characteristics
    examples:
      - value: wild caught
    keywords:
      - food
      - production
    slot_uri: MIXS:0001136
    multivalued: true
    range: string
  food_prod_synonym:
    description: Other names by which the food product is known by (e.g., regional
      or non-English names)
    title: food product synonym
    examples:
      - value: pinot gris
    keywords:
      - food
      - product
    slot_uri: MIXS:0001212
    multivalued: true
    range: string
  food_product_qual:
    description: Descriptors for describing food visually or via other senses, which
      is useful for tasks like food inspection where little prior knowledge of how
      the food came to be is available. Some terms like "food (frozen)" are both a
      quality descriptor and the output of a process. This field accepts terms listed
      under food product by quality (http://purl.obolibrary.org/obo/FOODON_00002454)
    title: food product by quality
    examples:
      - value: raw [FOODON:03311126]
    keywords:
      - food
      - product
      - quality
    slot_uri: MIXS:0001213
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  food_product_type:
    annotations:
      Expected_value: FOODON:00001002 or FOODON:03309997
    description: A food product type is a class of food products that is differentiated
      by its food composition (e.g., single- or multi-ingredient), processing and/or
      consumption characteristics. This does not include brand name products but it
      may include generic food dish categories. This field accepts terms under food
      product type (http://purl.obolibrary.org/obo/FOODON:03400361). For terms related
      to food product for an animal, consult food product for animal (http://purl.obolibrary.org/obo/FOODON_03309997).
      If the proper descriptor is not listed please use text to describe the food
      type. Multiple terms can be separated by one or more pipes
    title: food product type
    keywords:
      - food
      - product
      - type
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001184
  food_quality_date:
    annotations:
      Expected_value: enumeration, date
    description: The date recommended for the use of the product while at peak quality,
      this date is not a reflection of safety unless used on infant formula this date
      is not a reflection of safety and is typically labeled on a food product as
      "best if used by," best by," "use by," or "freeze by."
    title: food quality date
    examples:
      - value: best by 2020-05-24
    keywords:
      - date
      - food
      - quality
    string_serialization: '[best by|best if used by|freeze by|use by]; date'
    slot_uri: MIXS:0001178
  food_source:
    annotations:
      Expected_value: FOODON term
    description: Type of plant or animal from which the food product or its major
      ingredient is derived or a chemical food source [FDA CFSAN 1995]
    title: food source
    keywords:
      - food
      - source
    string_serialization: '{termLabel} [{termID}]'
    slot_uri: MIXS:0001139
  food_source_age:
    annotations:
      Preferred_unit: days
    description: The age of the food source host organim. Depending on the type of
      host organism, age may be more appropriate to report in days, weeks, or years
    title: food source age
    comments:
      - ISO 8601 period or measurement value?
    examples:
      - value: 6 months
    keywords:
      - age
      - food
      - source
    slot_uri: MIXS:0001251
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  food_trace_list:
    description: The FDA is proposing to establish additional traceability recordkeeping
      requirements (beyond what is already required in existing regulations) for persons
      who manufacture, process, pack, or hold foods the Agency has designated for
      inclusion on the Food Traceability List. The Food Traceability List (FTL) identifies
      the foods for which the additional traceability records described in the proposed
      rule would be required. The term  Food Traceability List  (FTL) refers not only
      to the foods specifically listed (https://www.fda.gov/media/142303/download),
      but also to any foods that contain listed foods as ingredients
    title: food traceability list category
    examples:
      - value: tropical tree fruits
    keywords:
      - food
    slot_uri: MIXS:0001214
    range: FoodTraceListEnum
  food_trav_mode:
    description: A descriptor for the method of movement of food commodity along the
      food distribution system.  This field accepts terms listed under travel mode
      (http://purl.obolibrary.org/obo/GENEPIO_0001064). If the proper descrptor is
      not listed please use text to describe the mode of travel. Multiple terms can
      be separated by one or more pipes
    title: food shipping transportation method
    examples:
      - value: train travel [GENEPIO:0001060]
    keywords:
      - food
      - method
      - transport
    slot_uri: MIXS:0001137
    multivalued: true
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  food_trav_vehic:
    annotations:
      Expected_value: ENVO:01000604
    description: A descriptor for the mobile machine which is used to transport food
      commodities along the food distribution system.  This field accepts terms listed
      under vehicle (http://purl.obolibrary.org/obo/ENVO_01000604). If the proper
      descrptor is not listed please use text to describe the mode of travel. Multiple
      terms can be separated by one or more pipes
    title: food shipping transportation vehicle
    examples:
      - value: aircraft [ENVO:01001488]|car [ENVO:01000605]
    keywords:
      - food
      - transport
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001138
    multivalued: true
  food_treat_proc:
    annotations:
      Expected_value: FOODON:03460111
    description: Used to specifically characterize a food product based on the treatment
      or processes applied to the product or any indexed ingredient. The processes
      include adding, substituting or removing components or modifying the food or
      component, e.g., through fermentation. Multiple values can be assigned. This
      fields accepts terms listed under food treatment process (http://purl.obolibrary.org/obo/FOODON_03460111)
    title: food treatment process
    examples:
      - value: gluten removal process [FOODON:03460750]
    keywords:
      - food
      - process
      - treatment
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001140
    multivalued: true
  freq_clean:
    description: The number of times the sample location is cleaned. Frequency of
      cleaning might be on a Daily basis, Weekly, Monthly, Quarterly or Annually
    title: frequency of cleaning
    examples:
      - value: Daily
    keywords:
      - frequency
    slot_uri: MIXS:0000226
    range: FreqCleanEnum
  freq_cook:
    description: The number of times a meal is cooked per week
    title: frequency of cooking
    keywords:
      - frequency
    slot_uri: MIXS:0000227
    range: string
    pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{integer} {text}$
      interpolated: true
      partial_match: true
  fungicide_regm:
    annotations:
      Preferred_unit: gram, mole per liter, milligram per liter
    description: Information about treatment involving use of fungicides; should include
      the name of fungicide, amount administered, treatment regimen including how
      many times the treatment was repeated, how long each treatment lasted, and the
      start and end time of the entire treatment; can include multiple fungicide regimens
    title: fungicide regimen
    examples:
      - value: bifonazole;1 mole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M
    keywords:
      - regimen
    slot_uri: MIXS:0000557
    multivalued: true
    range: string
  furniture:
    description: The types of furniture present in the sampled room
    title: furniture
    examples:
      - value: chair
    slot_uri: MIXS:0000807
    range: FurnitureEnum
  gaseous_environment:
    annotations:
      Preferred_unit: micromole per liter
    description: Use of conditions with differing gaseous environments; should include
      the name of gaseous compound, amount administered, treatment duration, interval
      and total experimental duration; can include multiple gaseous environment regimens
    title: gaseous environment
    examples:
      - value: nitric oxide;0.5 micromole per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M
    keywords:
      - environment
    slot_uri: MIXS:0000558
    multivalued: true
    range: string
  gaseous_substances:
    annotations:
      Expected_value: gaseous substance name;measurement value
      Preferred_unit: micromole per liter
    description: Amount or concentration of substances such as hydrogen sulfide, carbon
      dioxide, methane, etc.; can include multiple substances
    title: gaseous substances
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000661
    multivalued: true
  gastrointest_disord:
    description: History of gastrointestinal tract disorders; can include multiple
      disorders. History of blood disorders; can include multiple disorders.  The
      terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org,
      gastrointestinal system disease (https://disease-ontology.org/?id=DOID:77)
    title: gastrointestinal tract disorder
    keywords:
      - disorder
    slot_uri: MIXS:0000280
    multivalued: true
    range: string
  gender_restroom:
    description: The gender type of the restroom
    title: gender of restroom
    examples:
      - value: male
    slot_uri: MIXS:0000808
    range: GenderRestroomEnum
  genetic_mod:
    annotations:
      Expected_value: PMID, DOI, URL or text
    description: Genetic modifications of the genome of an organism, which may occur
      naturally by spontaneous mutation, or be introduced by some experimental means,
      e.g. specification of a transgene or the gene knocked-out or details of transient
      transfection
    title: genetic modification
    examples:
      - value: aox1A transgenic
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000859
  geo_loc_name:
    description: The geographical origin of the sample as defined by the country or
      sea name followed by specific region name. Country or sea names should be chosen
      from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology
      (http://purl.bioontology.org/ontology/GAZ)
    title: geographic location (country and/or sea,region)
    examples:
      - value: 'USA: Maryland, Bethesda'
    in_subset:
      - environment
    keywords:
      - geographic
      - location
    slot_uri: MIXS:0000010
    range: string
    required: true
    pattern: '^([^\s-]{1,2}|[^\s-]+.+[^\s-]+): ([^\s-]{1,2}|[^\s-]+.+[^\s-]+), ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$'
    structured_pattern:
      syntax: '^{text}: {text}, {text}$'
      interpolated: true
      partial_match: true
  gestation_state:
    description: Specification of the gestation state
    title: amniotic fluid/gestation state
    slot_uri: MIXS:0000272
    range: string
  glucosidase_act:
    annotations:
      Preferred_unit: mol per liter per hour
    description: Measurement of glucosidase activity
    title: glucosidase activity
    examples:
      - value: 5 mol per liter per hour
    slot_uri: MIXS:0000137
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  gravidity:
    description: Whether or not subject is gravid, and if yes date due or date post-conception,
      specifying which is used
    title: gravidity
    examples:
      - value: yes;due date:2018-05-11
    string_serialization: '{boolean};{timestamp}'
    slot_uri: MIXS:0000875
  gravity:
    annotations:
      Expected_value: gravity factor value;treatment interval and duration
      Preferred_unit: meter per square second, g
    description: Information about treatment involving use of gravity factor to study
      various types of responses in presence, absence or modified levels of gravity;
      treatment regimen including how many times the treatment was repeated, how long
      each treatment lasted, and the start and end time of the entire treatment; can
      include multiple treatments
    title: gravity
    examples:
      - value: 12 g;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M
    string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000559
    multivalued: true
  growth_facil:
    annotations:
      Expected_value: free text or CO
    description: 'Type of facility where the sampled plant was grown; controlled vocabulary:
      growth chamber, open top chamber, glasshouse, experimental garden, field. Alternatively
      use Crop Ontology (CO) terms, see http://www.cropontology.org/ontology/CO_715/Crop%20Research'
    title: growth facility
    examples:
      - value: Growth chamber [CO_715:0000189]
    keywords:
      - facility
      - growth
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001043
  growth_habit:
    description: Characteristic shape, appearance or growth form of a plant species
    title: growth habit
    examples:
      - value: spreading
    keywords:
      - growth
    slot_uri: MIXS:0001044
    range: GrowthHabitEnum
  growth_hormone_regm:
    annotations:
      Expected_value: growth hormone name;growth hormone amount;treatment interval and duration
      Preferred_unit: gram, mole per liter, milligram per liter
    description: Information about treatment involving use of growth hormones; should
      include the name of growth hormone, amount administered, treatment regimen including
      how many times the treatment was repeated, how long each treatment lasted, and
      the start and end time of the entire treatment; can include multiple growth
      hormone regimens
    title: growth hormone regimen
    examples:
      - value: abscisic acid;0.5 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M
    keywords:
      - growth
      - regimen
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000560
    multivalued: true
  growth_medium:
    description: A liquid or gel containing nutrients, salts, and other factors formulated
      to support the growth of microorganisms, cells, or plants (National Cancer Institute
      Thesaurus).  The name of the medium used to grow the microorganism
    title: growth medium
    examples:
      - value: LB broth
    keywords:
      - growth
    slot_uri: MIXS:0001108
    range: string
  gynecologic_disord:
    description: History of gynecological disorders; can include multiple disorders.
      The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org,
      female reproductive system disease (https://disease-ontology.org/?id=DOID:229)
    title: gynecological disorder
    keywords:
      - disorder
    slot_uri: MIXS:0000288
    multivalued: true
    range: string
  hall_count:
    description: The total count of hallways and cooridors in the built structure
    title: hallway/corridor count
    keywords:
      - corridor
      - count
      - hallway
    slot_uri: MIXS:0000228
    range: integer
  handidness:
    description: The handidness of the individual sampled
    title: handidness
    examples:
      - value: right handedness
    slot_uri: MIXS:0000809
    range: HandidnessEnum
  hc_produced:
    description: Main hydrocarbon type produced from resource (i.e. Oil, gas, condensate,
      etc). If "other" is specified, please propose entry in "additional info" field
    title: hydrocarbon type produced
    examples:
      - value: Gas
    keywords:
      - hydrocarbon
      - type
    slot_uri: MIXS:0000989
    range: HcProducedEnum
    required: true
  hcr:
    description: Main Hydrocarbon Resource type. The term "Hydrocarbon Resource" HCR
      defined as a natural environmental feature containing large amounts of hydrocarbons
      at high concentrations potentially suitable for commercial exploitation. This
      term should not be confused with the Hydrocarbon Occurrence term which also
      includes hydrocarbon-rich environments with currently limited commercial interest
      such as seeps, outcrops, gas hydrates etc. If "other" is specified, please propose
      entry in "additional info" field
    title: hydrocarbon resource type
    examples:
      - value: Oil Sand
    keywords:
      - hydrocarbon
      - resource
      - type
    slot_uri: MIXS:0000988
    range: HcrEnum
    required: true
  hcr_fw_salinity:
    annotations:
      Preferred_unit: milligram per liter
    description: Original formation water salinity (prior to secondary recovery e.g.
      Waterflooding) expressed as TDS
    title: formation water salinity
    keywords:
      - salinity
      - water
    slot_uri: MIXS:0000406
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  hcr_geol_age:
    description: 'Geological age of hydrocarbon resource (Additional info: https://en.wikipedia.org/wiki/Period_(geology)).
      If "other" is specified, please propose entry in "additional info" field'
    title: hydrocarbon resource geological age
    examples:
      - value: Silurian
    keywords:
      - age
      - hydrocarbon
      - resource
    slot_uri: MIXS:0000993
    range: GeolAgeEnum
    recommended: true
  hcr_pressure:
    annotations:
      Preferred_unit: atmosphere, kilopascal
    description: Original pressure of the hydrocarbon resource
    title: hydrocarbon resource original pressure
    keywords:
      - hydrocarbon
      - pressure
      - resource
    slot_uri: MIXS:0000395
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+ *- *[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{float} *- *{float} {unit}$
      interpolated: true
      partial_match: true
  hcr_temp:
    annotations:
      Preferred_unit: degree Celsius
    description: Original temperature of the hydrocarbon resource
    title: hydrocarbon resource original temperature
    examples:
      - value: 150-295 degree Celsius
    keywords:
      - hydrocarbon
      - resource
      - temperature
    slot_uri: MIXS:0000393
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+ *- *[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{float} *- *{float} {unit}$
      interpolated: true
      partial_match: true
  heat_cool_type:
    description: Methods of conditioning or heating a room or building
    title: heating and cooling system type
    examples:
      - value: heat pump
    keywords:
      - type
    slot_uri: MIXS:0000766
    multivalued: true
    range: HeatCoolTypeEnum
    required: true
  heat_deliv_loc:
    description: The location of heat delivery within the room
    title: heating delivery locations
    examples:
      - value: north
    keywords:
      - delivery
      - location
      - locations
    slot_uri: MIXS:0000810
    range: CompassDirections8Enum
  heat_sys_deliv_meth:
    description: The method by which the heat is delivered through the system
    title: heating system delivery method
    examples:
      - value: radiant
    keywords:
      - delivery
      - method
    slot_uri: MIXS:0000812
    range: HeatSysDelivMethEnum
  heat_system_id:
    description: The heating system identifier
    title: heating system identifier
    keywords:
      - identifier
    slot_uri: MIXS:0000833
    range: integer
  heavy_metals:
    annotations:
      Expected_value: heavy metal name;measurement value unit
      Preferred_unit: microgram per gram
    description: Heavy metals present in the sequenced sample and their concentrations.
      For multiple heavy metals and concentrations, add multiple copies of this field
    title: extreme_unusual_properties/heavy metals
    examples:
      - value: mercury;0.09 micrograms per gram
    keywords:
      - extreme
      - properties
      - unusual
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000652
    multivalued: true
  heavy_metals_meth:
    description: Reference or method used in determining heavy metals
    title: extreme_unusual_properties/heavy metals method
    keywords:
      - extreme
      - method
      - properties
      - unusual
    slot_uri: MIXS:0000343
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  height_carper_fiber:
    annotations:
      Preferred_unit: centimeter
    description: The average carpet fiber height in the indoor environment
    title: height carpet fiber mat
    keywords:
      - height
    slot_uri: MIXS:0000167
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  herbicide_regm:
    annotations:
      Preferred_unit: gram, mole per liter, milligram per liter
    description: Information about treatment involving use of herbicides; information
      about treatment involving use of growth hormones; should include the name of
      herbicide, amount administered, treatment regimen including how many times the
      treatment was repeated, how long each treatment lasted, and the start and end
      time of the entire treatment; can include multiple regimens
    title: herbicide regimen
    examples:
      - value: atrazine;10 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M
    keywords:
      - regimen
    slot_uri: MIXS:0000561
    multivalued: true
    range: string
  horizon_meth:
    description: Reference or method used in determining the horizon
    title: horizon method
    keywords:
      - horizon
      - method
    slot_uri: MIXS:0000321
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  host_age:
    annotations:
      Preferred_unit: year, day, hour
    description: Age of host at the time of sampling; relevant scale depends on species
      and study, e.g. Could be seconds for amoebae or centuries for trees
    title: host age
    keywords:
      - age
      - host
      - host.
    slot_uri: MIXS:0000255
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  host_body_habitat:
    description: Original body habitat where the sample was obtained from
    title: host body habitat
    keywords:
      - body
      - habitat
      - host
      - host.
    slot_uri: MIXS:0000866
    range: string
  host_body_mass_index:
    annotations:
      Preferred_unit: kilogram per square meter
    description: Body mass index, calculated as weight/(height)squared
    title: host body-mass index
    examples:
      - value: 22 kilogram per square meter
    keywords:
      - host
      - host.
    slot_uri: MIXS:0000317
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  host_body_product:
    annotations:
      Expected_value: FMA or UBERON
    description: Substance produced by the body, e.g. Stool, mucus, where the sample
      was obtained from. Use terms from the foundational model of anatomy ontology
      (fma) or Uber-anatomy ontology (UBERON)
    title: host body product
    examples:
      - value: mucus [FMA:66938]
    keywords:
      - body
      - host
      - host.
      - product
    string_serialization: '{termLabel} [{termID}]'
    slot_uri: MIXS:0000888
  host_body_site:
    annotations:
      Expected_value: FMA or UBERON
    description: Name of body site where the sample was obtained from, such as a specific
      organ or tissue (tongue, lung etc...). Use terms from the foundational model
      of anatomy ontology (fma) or the Uber-anatomy ontology (UBERON)
    title: host body site
    keywords:
      - body
      - host
      - site
    string_serialization: '{termLabel} [{termID}]'
    slot_uri: MIXS:0000867
  host_body_temp:
    annotations:
      Preferred_unit: degree Celsius
    description: Core body temperature of the host when sample was collected
    title: host body temperature
    keywords:
      - body
      - host
      - host.
      - temperature
    slot_uri: MIXS:0000274
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  host_cellular_loc:
    description: 'The localization of the symbiotic host organism within the host
      from which it was sampled: e.g. intracellular if the symbiotic host organism
      is localized within the cells or extracellular if the symbiotic host organism
      is localized outside of cells'
    title: host cellular location
    examples:
      - value: extracellular
    keywords:
      - host
      - host.
      - location
    slot_uri: MIXS:0001313
    range: HostCellularLocEnum
    recommended: true
  host_color:
    description: The color of host
    title: host color
    keywords:
      - host
      - host.
    slot_uri: MIXS:0000260
    range: string
  host_common_name:
    annotations:
      Preferred_unit: ''
    description: Common name of the host
    title: host common name
    keywords:
      - host
      - host.
    slot_uri: MIXS:0000248
    range: string
  host_dependence:
    description: Type of host dependence for the symbiotic host organism to its host
    title: host dependence
    examples:
      - value: obligate
    keywords:
      - host
      - host.
    slot_uri: MIXS:0001315
    range: HostDependenceEnum
    required: true
  host_diet:
    description: Type of diet depending on the host, for animals omnivore, herbivore
      etc., for humans high-fat, meditteranean etc.; can include multiple diet types
    title: host diet
    keywords:
      - diet
      - host
      - host.
    slot_uri: MIXS:0000869
    multivalued: true
    range: string
  host_disease_stat:
    annotations:
      Expected_value: disease name or Disease Ontology term
    description: List of diseases with which the host has been diagnosed; can include
      multiple diagnoses. The value of the field depends on host; for humans the terms
      should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org,
      non-human host diseases are free text
    title: host disease status
    in_subset:
      - nucleic acid sequence source
    keywords:
      - disease
      - host
      - host.
      - status
    string_serialization: '{termLabel} [{termID}]|{text}'
    slot_uri: MIXS:0000031
  host_dry_mass:
    annotations:
      Preferred_unit: kilogram, gram
    description: Measurement of dry mass
    title: host dry mass
    examples:
      - value: 500 gram
    keywords:
      - dry
      - host
      - host.
      - mass
    slot_uri: MIXS:0000257
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  host_fam_rel:
    annotations:
      Expected_value: relationship type;arbitrary identifier
    description: Relationships to other hosts in the same study; can include multiple
      relationships
    title: host family relationship
    keywords:
      - family
      - host
      - host.
      - relationship
    string_serialization: '{text};{text}'
    slot_uri: MIXS:0000872
    multivalued: true
  host_genotype:
    description: Observed genotype
    title: host genotype
    keywords:
      - host
      - host.
    slot_uri: MIXS:0000365
    range: string
  host_growth_cond:
    description: Literature reference giving growth conditions of the host
    title: host growth conditions
    examples:
      - value: https://academic.oup.com/icesjms/article/68/2/349/617247
    keywords:
      - condition
      - growth
      - host
      - host.
    slot_uri: MIXS:0000871
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}|{text}$
      interpolated: true
      partial_match: true
  host_height:
    annotations:
      Preferred_unit: centimeter, millimeter, meter
    description: The height of subject
    title: host height
    keywords:
      - height
      - host
      - host.
    slot_uri: MIXS:0000264
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  host_hiv_stat:
    annotations:
      Expected_value: HIV status;HAART initiation status
    description: HIV status of subject, if yes HAART initiation status should also
      be indicated as [YES or NO]
    title: host HIV status
    examples:
      - value: yes;yes
    keywords:
      - host
      - host.
      - status
    string_serialization: '{boolean};{boolean}'
    slot_uri: MIXS:0000265
  host_infra_spec_name:
    description: Taxonomic information about the host below subspecies level
    title: host infra-specific name
    keywords:
      - host
      - host.
    slot_uri: MIXS:0000253
    range: string
  host_infra_spec_rank:
    description: Taxonomic rank information about the host below subspecies level,
      such as variety, form, rank etc
    title: host infra-specific rank
    keywords:
      - host
      - host.
      - rank
    slot_uri: MIXS:0000254
    range: string
  host_last_meal:
    annotations:
      Expected_value: content;duration
    description: Content of last meal and time since feeding; can include multiple
      values
    title: host last meal
    keywords:
      - host
      - host.
    string_serialization: '{text};{duration}'
    slot_uri: MIXS:0000870
    multivalued: true
  host_length:
    annotations:
      Preferred_unit: centimeter, millimeter, meter
    description: The length of subject
    title: host length
    examples:
      - value: 1 meter
    keywords:
      - host
      - host.
      - length
    slot_uri: MIXS:0000256
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  host_life_stage:
    annotations:
      Expected_value: stage
    description: Description of life stage of host
    title: host life stage
    keywords:
      - host
      - host.
      - life
    range: string
    slot_uri: MIXS:0000251
  host_number:
    annotations:
      Expected_value: count
    description: Number of symbiotic host individuals pooled at the time of collection
    title: host number individual
    examples:
      - value: '3'
    keywords:
      - host
      - host.
      - number
    string_serialization: '{float} m'
    slot_uri: MIXS:0001305
  host_occupation:
    description: Most frequent job performed by subject
    title: host occupation
    comments:
      - Couldn't convert host_occupation with value veterinary to integer
      - almost all host_occupation values in the NCBI biosample_set are strings, not
        integers
    examples:
      - value: veterinary
    keywords:
      - host
      - host.
    slot_uri: MIXS:0000896
    range: string
  host_of_host_coinf:
    annotations:
      Expected_value: species name of coinfecting organism(s)
    description: The taxonomic name of any coinfecting organism observed in a symbiotic
      relationship with the host of the sampled host organism. e.g. where a sample
      collected from a host trematode species (A) which was collected from a host_of_host
      fish (B) that was also infected with a nematode (C), the value here would be
      (C) the nematode {species name} or {common name}. Multiple co-infecting species
      may be added in a comma-separated list. For listing symbiotic organisms associated
      with the host (A) use the term Observed host symbiont
    title: observed coinfecting organisms in host of host
    examples:
      - value: Maritrema novaezealandense
    keywords:
      - host
      - host.
      - observed
      - organism
    range: string
    slot_uri: MIXS:0001310
  host_of_host_disease:
    annotations:
      Expected_value: disease name or Disease Ontology term
    description: List of diseases with which the host of the symbiotic host organism
      has been diagnosed; can include multiple diagnoses. The value of the field depends
      on host; for humans the terms should be chosen from the DO (Human Disease Ontology)
      at https://www.disease-ontology.org, non-human host diseases are free text
    title: host of the symbiotic host disease status
    examples:
      - value: rabies [DOID:11260]
    keywords:
      - disease
      - host
      - host.
      - status
      - symbiosis
    string_serialization: '{termLabel} [{termID}]|{text}'
    slot_uri: MIXS:0001319
    multivalued: true
  host_of_host_env_loc:
    annotations:
      Expected_value: UBERON term(s), multiple values can be separated by pipes
    description: For a symbiotic host organism the local anatomical environment within
      its host may have causal influences. Report the anatomical entity(s) which are
      in the direct environment of the symbiotic host organism being sampled and which
      you believe have significant causal influences on your sample or specimen. For
      example, if the symbiotic host organism being sampled is an intestinal worm,
      its local environmental context will be the term for intestine from UBERON (http://uberon.github.io/)
    title: host of the symbiotic host local environmental context
    examples:
      - value: small intestine[uberon:0002108]
    keywords:
      - context
      - environmental
      - host
      - host.
      - symbiosis
    string_serialization: small intestine [UBERON:0002108]
    slot_uri: MIXS:0001325
    multivalued: true
  host_of_host_env_med:
    annotations:
      Expected_value: An ontology term for a material such as a tissue type or excreted substance
    description: 'Report the environmental material(s) immediately surrounding the
      symbiotic host organism at the time of sampling. This usually will be a tissue
      or substance type from the host, but may be another material if the symbiont
      is external to the host. We recommend using classes from the UBERON ontology,
      but subclasses of ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483)
      may also be used. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
      . Terms from other OBO ontologies are permissible as long as they reference
      mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
      (e.g. intestines, heart).MIxS . Terms from other OBO ontologies are permissible
      as long as they reference mass/volume nouns (e.g. air, water, blood) and not
      discrete, countable entities (e.g. intestines, heart)'
    title: host of the symbiotic host environemental medium
    examples:
      - value: feces[uberon:0001988]
    keywords:
      - environmental
      - host
      - host.
      - symbiosis
    string_serialization: '{termLabel} [{termID}]'
    slot_uri: MIXS:0001326
  host_of_host_fam_rel:
    annotations:
      Expected_value: relationship type;arbitrary identifier
    description: Familial relationship of the host of the symbiotic host organisms
      to other hosts of symbiotic host organism in the same study; can include multiple
      relationships
    title: host of the symbiotic host family relationship
    keywords:
      - family
      - host
      - host.
      - relationship
      - symbiosis
    string_serialization: '{text};{text}'
    slot_uri: MIXS:0001328
    multivalued: true
  host_of_host_geno:
    description: Observed genotype of the host of the symbiotic host organism
    title: host of the symbiotic host genotype
    keywords:
      - host
      - host.
      - symbiosis
    slot_uri: MIXS:0001331
    range: string
  host_of_host_gravid:
    annotations:
      Expected_value: gravidity status;timestamp
    description: Whether or not the host of the symbiotic host organism is gravid,
      and if yes date due or date post-conception, specifying which is used
    title: host of the symbiotic host gravidity
    keywords:
      - host
      - host.
      - symbiosis
    string_serialization: '{boolean};{timestamp}'
    slot_uri: MIXS:0001333
  host_of_host_infname:
    description: Taxonomic name information of the host of the symbiotic host organism
      below subspecies level
    title: host of the symbiotic host infra-specific name
    keywords:
      - host
      - host.
      - symbiosis
    slot_uri: MIXS:0001329
    range: string
  host_of_host_infrank:
    description: Taxonomic rank information about the host of the symbiotic host organism
      below subspecies level, such as variety, form, rank etc
    title: host of the symbiotic host infra-specific rank
    keywords:
      - host
      - host.
      - rank
      - symbiosis
    slot_uri: MIXS:0001330
    range: string
  host_of_host_name:
    description: Common name of the host of the symbiotic host organism
    title: host of the symbiotic host common name
    examples:
      - value: snail
    keywords:
      - host
      - host.
      - symbiosis
    slot_uri: MIXS:0001324
    range: string
  host_of_host_pheno:
    annotations:
      Expected_value: phenotype of the host of the symbiotic organism; PATO
    description: Phenotype of the host of the symbiotic host organism. For phenotypic
      quality ontology (PATO) terms, see http://purl.bioontology.org/ontology/pato
    title: host of the symbiotic host phenotype
    keywords:
      - host
      - host.
      - symbiosis
    string_serialization: '{term}'
    slot_uri: MIXS:0001332
  host_of_host_sub_id:
    description: 'A unique identifier by which each host of the symbiotic host organism
      subject can be referred to, de-identified, e.g. #H14'
    title: host of the symbiotic host subject id
    examples:
      - value: H3
    keywords:
      - host
      - host.
      - identifier
      - symbiosis
    slot_uri: MIXS:0001327
    range: string
  host_of_host_taxid:
    annotations:
      Expected_value: NCBI taxon identifier of the host of the symbiotic taxon organism
    description: NCBI taxon id of the host of the symbiotic host organism
    title: host of the symbiotic host taxon id
    examples:
      - value: '145637'
    keywords:
      - host
      - host.
      - identifier
      - symbiosis
      - taxon
    string_serialization: '{integer}'
    slot_uri: MIXS:0001306
  host_of_host_totmass:
    description: Total mass of the host of the symbiotic host organism at collection,
      the unit depends on the host
    title: host of the symbiotic host total mass
    keywords:
      - host
      - host.
      - mass
      - symbiosis
      - total
    slot_uri: MIXS:0001334
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  host_phenotype:
    annotations:
      Expected_value: PATO or HP
    description: Phenotype of human or other host. Use terms from the phenotypic quality
      ontology (pato) or the Human Phenotype Ontology (HP)
    title: host phenotype
    keywords:
      - host
      - host.
    string_serialization: '{termLabel} [{termID}]'
    slot_uri: MIXS:0000874
  host_pred_appr:
    description: Tool or approach used for host prediction
    title: host prediction approach
    examples:
      - value: CRISPR spacer match
    in_subset:
      - sequencing
    keywords:
      - host
      - host.
      - predict
    slot_uri: MIXS:0000088
    range: HostPredApprEnum
  host_pred_est_acc:
    description: For each tool or approach used for host prediction, estimated false
      discovery rates should be included, either computed de novo or from the literature
    title: host prediction estimated accuracy
    examples:
      - value: 'CRISPR spacer match: 0 or 1 mismatches, estimated 8% FDR at the host
        genus rank (Edwards et al. 2016 doi:10.1093/femsre/fuv048)'
    in_subset:
      - sequencing
    keywords:
      - host
      - host.
      - predict
    slot_uri: MIXS:0000089
    range: string
  host_pulse:
    annotations:
      Preferred_unit: beats per minute
    description: Resting pulse, measured as beats per minute
    title: host pulse
    examples:
      - value: 65 beats per minute
    keywords:
      - host
      - host.
    slot_uri: MIXS:0000333
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  host_sex:
    annotations:
      Expected_value: enumeration
    description: Gender or physical sex of the host
    title: host sex
    comments:
      - example of non-binary from Excel sheets does not match any of the enumerated
        values
    keywords:
      - host
      - host.
    string_serialization: '[female|hermaphrodite|non-binary|male|transgender|transgender
      (female to male)|transgender (male to female)

      |undeclared]'
    slot_uri: MIXS:0000811
  host_shape:
    description: Morphological shape of host
    title: host shape
    examples:
      - value: round
    keywords:
      - host
      - host.
    slot_uri: MIXS:0000261
    range: string
  host_spec_range:
    annotations:
      Expected_value: NCBI taxid
    description: The range and diversity of host species that an organism is capable
      of infecting, defined by NCBI taxonomy identifier
    title: host specificity or range
    examples:
      - value: '9606'
    in_subset:
      - nucleic acid sequence source
    keywords:
      - host
      - host.
      - range
    string_serialization: '{integer}'
    slot_uri: MIXS:0000030
    multivalued: true
  host_specificity:
    description: 'Level of specificity of symbiont-host interaction: e.g. generalist
      (symbiont able to establish associations with distantly related hosts) or species-specific'
    title: host specificity
    examples:
      - value: species-specific
    keywords:
      - host
      - host.
    slot_uri: MIXS:0001308
    range: HostSpecificityEnum
    recommended: true
  host_subject_id:
    description: A unique identifier by which each subject can be referred to, de-identified
    title: host subject id
    keywords:
      - host
      - host.
      - identifier
    slot_uri: MIXS:0000861
    range: string
  host_subspecf_genlin:
    annotations:
      Expected_value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies,
        e.g. serovar, biotype, ecotype, variety, cultivar
    description: Information about the genetic distinctness of the host organism below
      the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar,
      or any relevant genetic typing schemes like Group I plasmid. Subspecies should
      not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage
      name and the lineage rank separated by a colon, e.g., biovar:abc123
    title: host subspecific genetic lineage
    examples:
      - value: 'serovar:Newport, variety:glabrum, cultivar: Red Delicious'
    keywords:
      - host
      - host.
      - lineage
    string_serialization: '{rank name}:{text}'
    slot_uri: MIXS:0001318
    multivalued: true
  host_substrate:
    description: The growth substrate of the host
    title: host substrate
    examples:
      - value: rock
    keywords:
      - host
      - host.
    slot_uri: MIXS:0000252
    range: string
  host_symbiont:
    annotations:
      Expected_value: species name or common name
    description: The taxonomic name of the organism(s) found living in mutualistic,
      commensalistic, or parasitic symbiosis with the specific host. The sampled symbiont
      can have its own symbionts. For example, parasites may have hyperparasites (=parasites
      of the parasite)
    title: observed host symbionts
    keywords:
      - host
      - host.
      - observed
      - symbiosis
    range: string
    slot_uri: MIXS:0001298
    multivalued: true
  host_taxid:
    annotations:
      Expected_value: NCBI taxon identifier
    description: NCBI taxon id of the host, e.g. 9606
    title: host taxid
    keywords:
      - host
      - host.
      - taxon
    slot_uri: MIXS:0000250
  host_tot_mass:
    annotations:
      Preferred_unit: kilogram, gram
    description: Total mass of the host at collection, the unit depends on host
    title: host total mass
    keywords:
      - host
      - host.
      - mass
      - total
    slot_uri: MIXS:0000263
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  host_wet_mass:
    annotations:
      Preferred_unit: kilogram, gram
    description: Measurement of wet mass
    title: host wet mass
    examples:
      - value: 1500 gram
    keywords:
      - host
      - host.
      - mass
      - wet
    slot_uri: MIXS:0000567
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  hrt:
    description: Whether subject had hormone replacement theraphy, and if yes start
      date
    title: HRT
    examples:
      - value: '2013-03-25T12:42:31+01:00'
    slot_uri: MIXS:0000969
    range: datetime
  humidity:
    description: Amount of water vapour in the air, at the time of sampling
    title: humidity
    keywords:
      - humidity
    slot_uri: MIXS:0000100
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  humidity_regm:
    annotations:
      Expected_value: humidity value;treatment interval and duration
      Preferred_unit: gram per cubic meter
    description: Information about treatment involving an exposure to varying degree
      of humidity; information about treatment involving use of growth hormones; should
      include amount of humidity administered, treatment regimen including how many
      times the treatment was repeated, how long each treatment lasted, and the start
      and end time of the entire treatment; can include multiple regimens
    title: humidity regimen
    examples:
      - value: 25 gram per cubic meter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M
    keywords:
      - humidity
      - regimen
    string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000568
    multivalued: true
  hygienic_area:
    annotations:
      Expected_value: Expected value
    description: The subdivision of areas within a food production facility according
      to hygienic requirements. This field accepts terms listed under hygienic food
      production area (http://purl.obolibrary.org/obo/ENVO). Please add a term that
      most accurately indicates the hygienic area your sample was taken from according
      to the definitions provided
    title: hygienic food production area
    examples:
      - value: Low Hygiene Area
    keywords:
      - area
      - food
      - production
    range: string
    slot_uri: MIXS:0001253
  hysterectomy:
    description: Specification of whether hysterectomy was performed
    title: hysterectomy
    examples:
      - value: 'no'
    slot_uri: MIXS:0000287
    range: boolean
  ihmc_medication_code:
    description: Can include multiple medication codes
    title: IHMC medication code
    examples:
      - value: '810'
    keywords:
      - code
    slot_uri: MIXS:0000884
    multivalued: true
    range: integer
  indoor_space:
    description: A distinguishable space within a structure, the purpose for which
      discrete areas of a building is used
    title: indoor space
    examples:
      - value: foyer
    keywords:
      - indoor
    slot_uri: MIXS:0000763
    range: IndoorSpaceEnum
    required: true
  indoor_surf:
    description: Type of indoor surface
    title: indoor surface
    examples:
      - value: wall
    keywords:
      - indoor
      - surface
    slot_uri: MIXS:0000764
    range: IndoorSurfEnum
  indust_eff_percent:
    annotations:
      Preferred_unit: percentage
    description: Percentage of industrial effluents received by wastewater treatment
      plant
    title: industrial effluent percent
    keywords:
      - percent
    slot_uri: MIXS:0000662
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  inorg_particles:
    annotations:
      Expected_value: inorganic particle name;measurement value
      Preferred_unit: mole per liter, milligram per liter
    description: Concentration of particles such as sand, grit, metal particles, ceramics,
      etc.; can include multiple particles
    title: inorganic particles
    keywords:
      - inorganic
      - particle
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000664
    multivalued: true
  inside_lux:
    annotations:
      Preferred_unit: kilowatt per square metre
    description: The recorded value at sampling time (power density)
    title: inside lux light
    keywords:
      - inside
      - light
    slot_uri: MIXS:0000168
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  int_wall_cond:
    description: The physical condition of the wall at the time of sampling; photos
      or video preferred; use drawings to indicate location of damaged areas
    title: interior wall condition
    examples:
      - value: damaged
    keywords:
      - condition
      - interior
      - wall
    slot_uri: MIXS:0000813
    range: DamagedEnum
  intended_consumer:
    annotations:
      Expected_value: FOODON_03510136 or NCBI taxid
    description: Food consumer type, human or animal, for which the food product is
      produced and marketed. This field accepts terms listed under food consumer group
      (http://purl.obolibrary.org/obo/FOODON_03510136) or NCBI taxid
    title: intended consumer
    examples:
      - value: 9606 o rsenior as food consumer [FOODON:03510254]
    keywords:
      - consumer
    string_serialization: '{integer}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001144
    multivalued: true
  isol_growth_condt:
    description: Publication reference in the form of pubmed ID (pmid), digital object
      identifier (doi) or url for isolation and growth condition specifications of
      the organism/material
    title: isolation and growth condition
    examples:
      - value: doi:10.1016/j.syapm.2018.01.009
    in_subset:
      - nucleic acid sequence source
    keywords:
      - condition
      - growth
      - isolation
    slot_uri: MIXS:0000003
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  iw_bt_date_well:
    description: Injection water breakthrough date per well following a secondary
      and/or tertiary recovery
    title: injection water breakthrough date of specific well
    examples:
      - value: '2013-03-25T12:42:31+01:00'
    keywords:
      - date
      - water
    slot_uri: MIXS:0001010
    range: datetime
  iwf:
    annotations:
      Preferred_unit: percent
    description: Proportion of the produced fluids derived from injected water at
      the time of sampling. (e.g. 87%)
    title: injection water fraction
    comments:
      - pattern was "[0-9]*\\.?[0-9]+ ?%"
      - percent or float?
    examples:
      - value: '0.79'
    keywords:
      - fraction
      - water
    slot_uri: MIXS:0000455
    range: float
    required: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  kidney_disord:
    description: History of kidney disorders; can include multiple disorders. The
      terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org,
      kidney disease (https://disease-ontology.org/?id=DOID:557)
    title: urine/kidney disorder
    keywords:
      - disorder
    slot_uri: MIXS:0000277
    multivalued: true
    range: string
  last_clean:
    description: The last time the floor was cleaned (swept, mopped, vacuumed)
    title: last time swept/mopped/vacuumed
    examples:
      - value: '2013-03-25T12:42:31+01:00'
    keywords:
      - time
    slot_uri: MIXS:0000814
    range: datetime
  lat_lon:
    description: The geographical origin of the sample as defined by latitude and
      longitude. The values should be reported in decimal degrees, limited to 8 decimal points,
      and in WGS84 system
    title: geographic location (latitude and longitude)
    examples:
      - value: 50.586825 6.408977
    in_subset:
      - environment
    keywords:
      - geographic
      - location
    slot_uri: MIXS:0000009
    required: true
    pattern: ^(-?((?:[0-8]?[0-9](?:\.\d{0,8})?)|90)) -?[0-9]+(?:\.[0-9]{0,8})?$|^-?(1[0-7]{1,2})$
    structured_pattern:
      syntax: ^{lat} {lon}$
      interpolated: true
      partial_match: true
  lib_layout:
    description: Specify whether to expect single, paired, or other configuration
      of reads
    title: library layout
    examples:
      - value: paired
    in_subset:
      - sequencing
    keywords:
      - library
    slot_uri: MIXS:0000041
    range: LibLayoutEnum
  lib_reads_seqd:
    description: Total number of clones sequenced from the library
    title: library reads sequenced
    examples:
      - value: '20'
    in_subset:
      - sequencing
    keywords:
      - library
    slot_uri: MIXS:0000040
    range: integer
  lib_screen:
    annotations:
      Expected_value: screening strategy name
    description: Specific enrichment or screening methods applied before and/or after
      creating libraries
    title: library screening strategy
    examples:
      - value: enriched, screened, normalized
    in_subset:
      - sequencing
    keywords:
      - library
    range: string
    slot_uri: MIXS:0000043
  lib_size:
    description: Total number of clones in the library prepared for the project
    title: library size
    examples:
      - value: '50'
    in_subset:
      - sequencing
    keywords:
      - library
      - size
    slot_uri: MIXS:0000039
    range: integer
  lib_vector:
    annotations:
      Expected_value: vector
    description: Cloning vector type(s) used in construction of libraries
    title: library vector
    examples:
      - value: Bacteriophage P1
    in_subset:
      - sequencing
    keywords:
      - library
    range: string
    slot_uri: MIXS:0000042
  library_prep_kit:
    annotations:
      Expected_value: name of library preparation kit
    description: Packaged kits (containing adapters, indexes, enzymes, buffers etc.),
      tailored for specific sequencing workflows, which allow the simplified preparation
      of sequencing-ready libraries for small genomes, amplicons, and plasmids
    title: library preparation kit
    keywords:
      - kit
      - library
      - preparation
    range: string
    slot_uri: MIXS:0001145
  light_intensity:
    annotations:
      Preferred_unit: lux
    description: Measurement of light intensity
    title: light intensity
    examples:
      - value: 0.3 lux
    keywords:
      - intensity
      - light
    slot_uri: MIXS:0000706
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  light_regm:
    annotations:
      Expected_value: exposure type;light intensity;light quality
      Preferred_unit: lux; micrometer, nanometer, angstrom
    description: Information about treatment(s) involving exposure to light, including
      both light intensity and quality
    title: light regimen
    examples:
      - value: incandescant light;10 lux;450 nanometer
    keywords:
      - light
      - regimen
    string_serialization: '{text};{float} {unit};{float} {unit}'
    slot_uri: MIXS:0000569
  light_type:
    description: Application of light to achieve some practical or aesthetic effect.
      Lighting includes the use of both artificial light sources such as lamps and
      light fixtures, as well as natural illumination by capturing daylight. Can also
      include absence of light
    title: light type
    examples:
      - value: desk lamp
    keywords:
      - light
      - type
    slot_uri: MIXS:0000769
    multivalued: true
    range: LightTypeEnum
    required: true
  link_addit_analys:
    description: Link to additional analysis results performed on the sample
    title: links to additional analysis
    keywords:
      - link
    slot_uri: MIXS:0000340
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  link_class_info:
    annotations:
      Expected_value: PMID,DOI or url
    description: Link to digitized soil maps or other soil classification information
    title: link to classification information
    keywords:
      - classification
      - information
      - link
    string_serialization: '{termLabel} [{termID}]'
    slot_uri: MIXS:0000329
  link_climate_info:
    description: Link to climate resource
    title: link to climate information
    keywords:
      - information
      - link
    slot_uri: MIXS:0000328
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  lithology:
    description: 'Hydrocarbon resource main lithology (Additional information: http://petrowiki.org/Lithology_and_rock_type_determination).
      If "other" is specified, please propose entry in "additional info" field'
    title: lithology
    examples:
      - value: Volcanic
    keywords:
      - lithology
    slot_uri: MIXS:0000990
    range: LithologyEnum
    recommended: true
  liver_disord:
    description: History of liver disorders; can include multiple disorders. The terms
      should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org,
      liver disease (https://disease-ontology.org/?id=DOID:409)
    title: liver disorder
    keywords:
      - disorder
    slot_uri: MIXS:0000282
    multivalued: true
    range: string
  local_class:
    annotations:
      Expected_value: local classification name
    description: Soil classification based on local soil classification system
    title: soil_taxonomic/local classification
    keywords:
      - classification
    range: string
    slot_uri: MIXS:0000330
  local_class_meth:
    description: Reference or method used in determining the local soil classification
    title: soil_taxonomic/local classification method
    keywords:
      - classification
      - method
    slot_uri: MIXS:0000331
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  lot_number:
    annotations:
      Expected_value: lot number, item
    description: 'A distinctive alpha-numeric identification code assigned by the
      manufacturer or distributor to a specific quantity of manufactured material
      or product within a batch. Synonym: Batch Number.  The submitter should provide
      lot number of the item followed by the item name for which the lot number was
      provided'
    title: lot number
    examples:
      - value: 1239ABC01A, split Cornish hens
    keywords:
      - number
    string_serialization: '{integer}, {text}'
    slot_uri: MIXS:0001147
    multivalued: true
  mag_cov_software:
    description: Tool(s) used to determine the genome coverage if coverage is used
      as a binning parameter in the extraction of genomes from metagenomic datasets
    title: MAG coverage software
    examples:
      - value: bbmap
    in_subset:
      - sequencing
    keywords:
      - software
    slot_uri: MIXS:0000080
    range: MagCovSoftwareEnum
  magnesium:
    annotations:
      Preferred_unit: mole per liter, milligram per liter, parts per million, micromole per
        kilogram
    description: Concentration of magnesium in the sample
    title: magnesium
    examples:
      - value: 52.8 micromole per kilogram
    slot_uri: MIXS:0000431
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  maternal_health_stat:
    description: Specification of the maternal health status
    title: amniotic fluid/maternal health status
    keywords:
      - status
    slot_uri: MIXS:0000273
    range: string
  max_occup:
    description: The maximum amount of people allowed in the indoor environment
    title: maximum occupancy
    keywords:
      - maximum
    slot_uri: MIXS:0000229
    range: string
    pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{integer} {text}$
      interpolated: true
      partial_match: true
  mean_frict_vel:
    annotations:
      Preferred_unit: meter per second
    description: Measurement of mean friction velocity
    title: mean friction velocity
    examples:
      - value: 0.5 meter per second
    keywords:
      - mean
      - velocity
    slot_uri: MIXS:0000498
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  mean_peak_frict_vel:
    annotations:
      Preferred_unit: meter per second
    description: Measurement of mean peak friction velocity
    title: mean peak friction velocity
    examples:
      - value: 1 meter per second
    keywords:
      - mean
      - peak
      - velocity
    slot_uri: MIXS:0000502
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  mech_struc:
    description: 'mechanical structure: a moving structure'
    title: mechanical structure
    examples:
      - value: elevator
    slot_uri: MIXS:0000815
    range: MechStrucEnum
  mechanical_damage:
    annotations:
      Expected_value: damage type;body site
    description: Information about any mechanical damage exerted on the plant; can
      include multiple damages and sites
    title: mechanical damage
    examples:
      - value: pruning;bark
    string_serialization: '{text};{text}'
    slot_uri: MIXS:0001052
    multivalued: true
  medic_hist_perform:
    description: Whether full medical history was collected
    title: medical history performed
    examples:
      - value: '1'
    keywords:
      - history
    slot_uri: MIXS:0000897
    range: boolean
  menarche:
    description: Date of most recent menstruation
    title: menarche
    examples:
      - value: '2013-03-25T12:42:31+01:00'
    slot_uri: MIXS:0000965
    range: datetime
  menopause:
    description: Date of onset of menopause
    title: menopause
    examples:
      - value: '2013-03-25T12:42:31+01:00'
    slot_uri: MIXS:0000968
    range: datetime
  methane:
    annotations:
      Preferred_unit: micromole per liter, parts per billion, parts per million
    description: Methane (gas) amount or concentration at the time of sampling
    title: methane
    slot_uri: MIXS:0000101
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  micro_biomass_meth:
    description: Reference or method used in determining microbial biomass
    title: microbial biomass method
    comments:
      - slot name/scn was microbial_biomass_meth
    examples:
      - value: http://dx.doi.org/10.1016/j.soilbio.2005.01.021
    keywords:
      - biomass
      - method
      - microbial
    slot_uri: MIXS:0000339
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  microb_cult_med:
    description: A culture medium used to select for, grow, and maintain prokaryotic
      microorganisms. Can be in either liquid (broth) or solidified (e.g. with agar)
      forms. This field accepts terms listed under microbiological culture medium
      (http://purl.obolibrary.org/obo/MICRO_0000067). If the proper descriptor is
      not listed please use text to describe the culture medium
    title: microbiological culture medium
    examples:
      - value: brain heart infusion agar [MICRO:0000566]
    keywords:
      - culture
      - microbiological
    slot_uri: MIXS:0001216
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$
    structured_pattern:
      syntax: ^{text}|({termLabel} \[{termID}\])$
      interpolated: true
      partial_match: true
  microb_start:
    annotations:
      Expected_value: FOODON:03544453
    description: Any type of microorganisms used in food production.  This field accepts
      terms listed under live organisms for food production (http://purl.obolibrary.org/obo/FOODON_0344453)
    title: microbial starter
    examples:
      - value: starter cultures [FOODON:03544454]
    keywords:
      - microbial
    string_serialization: '{term label} [{termID}]|{text}'
    slot_uri: MIXS:0001217
  microb_start_count:
    annotations:
      Expected_value: organism name; measurement value; enumeration
      Preferred_unit: colony forming units per milliliter; colony forming units per gram
        of dry weight
    description: 'Total cell count of starter culture per gram, volume or area of
      sample and the method that was used for the enumeration (e.g. qPCR, atp, mpn,
      etc.) should also be provided. (example : total prokaryotes; 3.5e7 cells per
      ml; qPCR)'
    title: microbial starter organism count
    examples:
      - value: total prokaryotes;3.5e9 colony forming units per milliliter;spread plate
    keywords:
      - count
      - microbial
      - organism
    string_serialization: '{text};{float} {unit};[ATP|MPN|qPCR|spread plate|other]'
    slot_uri: MIXS:0001218
  microb_start_inoc:
    annotations:
      Preferred_unit: milligram or gram
    description: The amount of starter culture used to inoculate a new batch
    title: microbial starter inoculation
    examples:
      - value: 100 milligrams
    keywords:
      - microbial
    slot_uri: MIXS:0001219
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  microb_start_prep:
    description: Information about the protocol or method used to prepare the starter
      inoculum
    title: microbial starter preparation
    examples:
      - value: liquid starter culture, propagated 3 cycles in milk prior to inoculation
    keywords:
      - microbial
      - preparation
    slot_uri: MIXS:0001220
    range: string
  microb_start_source:
    description: The source from which the microbial starter culture was sourced.  If
      commercially supplied, list supplier
    title: microbial starter source
    examples:
      - value: backslopped, GetCulture
    keywords:
      - microbial
      - source
    slot_uri: MIXS:0001221
    range: string
  microb_start_taxID:
    description: Please include Genus species and strain ID, if known of microorganisms
      used in food production. For complex communities, pipes can be used to separate
      two or more microbes
    title: microbial starter NCBI taxonomy ID
    examples:
      - value: Lactobacillus rhamnosus [NCIT:C123495]
    keywords:
      - identifier
      - microbial
      - ncbi
      - taxon
    slot_uri: MIXS:0001222
    range: string
    pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$
    structured_pattern:
      syntax: ^({termLabel} \[{termID}\])|{integer}$
      interpolated: true
      partial_match: true
  microbial_biomass:
    annotations:
      Preferred_unit: ton, kilogram, gram per kilogram soil
    description: The part of the organic matter in the soil that constitutes living
      microorganisms smaller than 5-10 micrometer. If you keep this, you would need
      to have correction factors used for conversion to the final units
    title: microbial biomass
    keywords:
      - biomass
      - microbial
    slot_uri: MIXS:0000650
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  mid:
    description: Molecular barcodes, called Multiplex Identifiers (MIDs), that are
      used to specifically tag unique samples in a sequencing run. Sequence should
      be reported in uppercase letters
    title: multiplex identifiers
    examples:
      - value: GTGAATAT
    in_subset:
      - sequencing
    keywords:
      - identifier
    slot_uri: MIXS:0000047
    range: string
    pattern: ^[ACGTRKSYMWBHDVN]+$
    structured_pattern:
      syntax: ^{ambiguous_nucleotides}$
      interpolated: true
      partial_match: true
  mineral_nutr_regm:
    annotations:
      Expected_value: mineral nutrient name;mineral nutrient amount;treatment interval and
        duration
      Preferred_unit: gram, mole per liter, milligram per liter
    description: Information about treatment involving the use of mineral supplements;
      should include the name of mineral nutrient, amount administered, treatment
      regimen including how many times the treatment was repeated, how long each treatment
      lasted, and the start and end time of the entire treatment; can include multiple
      mineral nutrient regimens
    title: mineral nutrient regimen
    examples:
      - value: potassium;15 gram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M
    keywords:
      - mineral
      - nutrient
      - regimen
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000570
    multivalued: true
  misc_param:
    annotations:
      Expected_value: parameter name;measurement value
    description: Any other measurement performed or parameter collected, that is not
      listed here
    title: miscellaneous parameter
    examples:
      - value: Bicarbonate ion concentration;2075 micromole per kilogram
    keywords:
      - parameter
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000752
    multivalued: true
  mode_transmission:
    description: The process through which the symbiotic host organism entered the
      host from which it was sampled
    title: mode of transmission
    examples:
      - value: horizontal:castrator
    slot_uri: MIXS:0001312
    range: ModeTransmissionEnum
    recommended: true
  n_alkanes:
    annotations:
      Expected_value: n-alkane name;measurement value
    description: Concentration of n-alkanes; can include multiple n-alkanes
    title: n-alkanes
    examples:
      - value: n-hexadecane;100 milligram per liter
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000503
    multivalued: true
  neg_cont_type:
    annotations:
      Expected_value: enumeration or text
    description: The substance or equipment used as a negative control in an investigation
    title: negative control type
    in_subset:
      - investigation
    keywords:
      - type
    slot_uri: MIXS:0001321
    range: NegContTypeEnum
    recommended: true
  nitrate:
    annotations:
      Preferred_unit: micromole per liter, milligram per liter, parts per million
    description: Concentration of nitrate in the sample
    title: nitrate
    examples:
      - value: 65 micromole per liter
    keywords:
      - nitrate
    slot_uri: MIXS:0000425
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  nitrite:
    annotations:
      Preferred_unit: micromole per liter, milligram per liter, parts per million
    description: Concentration of nitrite in the sample
    title: nitrite
    examples:
      - value: 0.5 micromole per liter
    keywords:
      - nitrite
    slot_uri: MIXS:0000426
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  nitro:
    annotations:
      Preferred_unit: micromole per liter
    description: Concentration of nitrogen (total)
    title: nitrogen
    examples:
      - value: 4.2 micromole per liter
    keywords:
      - nitrogen
    slot_uri: MIXS:0000504
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  non_min_nutr_regm:
    annotations:
      Preferred_unit: gram, mole per liter, milligram per liter
    description: Information about treatment involving the exposure of plant to non-mineral
      nutrient such as oxygen, hydrogen or carbon; should include the name of non-mineral
      nutrient, amount administered, treatment regimen including how many times the
      treatment was repeated, how long each treatment lasted, and the start and end
      time of the entire treatment; can include multiple non-mineral nutrient regimens
    title: non-mineral nutrient regimen
    examples:
      - value: https://phylogenomics.me/protocols/16s-pcr-protocol/
    keywords:
      - non-mineral
      - nutrient
      - regimen
    slot_uri: MIXS:0000571
    multivalued: true
    range: string
  nose_mouth_teeth_throat_disord:
    description: History of nose/mouth/teeth/throat disorders; can include multiple
      disorders. The terms should be chosen from the DO (Human Disease Ontology) at
      http://www.disease-ontology.org, nose disease (https://disease-ontology.org/?id=DOID:2825),
      mouth disease (https://disease-ontology.org/?id=DOID:403), tooth disease (https://disease-ontology.org/?id=DOID:1091),
      or upper respiratory tract disease (https://disease-ontology.org/?id=DOID:974)
    title: nose/mouth/teeth/throat disorder
    keywords:
      - disorder
    slot_uri: MIXS:0000283
    multivalued: true
    range: string
  nose_throat_disord:
    description: History of nose-throat disorders; can include multiple disorders,  The
      terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org,
      lung disease (https://disease-ontology.org/?id=DOID:850), upper respiratory
      tract disease (https://disease-ontology.org/?id=DOID:974)
    title: nose throat disorder
    keywords:
      - disorder
    slot_uri: MIXS:0000270
    multivalued: true
    range: string
  nucl_acid_amp:
    description: A link to a literature reference, electronic resource or a standard
      operating procedure (SOP), that describes the enzymatic amplification (PCR,
      TMA, NASBA) of specific nucleic acids
    title: nucleic acid amplification
    examples:
      - value: https://phylogenomics.me/protocols/16s-pcr-protocol/
    in_subset:
      - sequencing
    slot_uri: MIXS:0000038
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  nucl_acid_ext:
    description: A link to a literature reference, electronic resource or a standard
      operating procedure (SOP), that describes the material separation to recover
      the nucleic acid fraction from a sample
    title: nucleic acid extraction
    examples:
      - value: https://mobio.com/media/wysiwyg/pdfs/protocols/12888.pdf
    in_subset:
      - sequencing
    slot_uri: MIXS:0000037
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  nucl_acid_ext_kit:
    annotations:
      Expected_value: The name of an extraction kit
    description: The name of the extraction kit used to recover the nucleic acid fraction
      of an input material is performed
    title: nucleic acid extraction kit
    examples:
      - value: Qiagen PowerSoil Kit
    keywords:
      - kit
    range: string
    slot_uri: MIXS:0001223
    multivalued: true
  num_replicons:
    annotations:
      Expected_value: 'for eukaryotes and bacteria: chromosomes (haploid count); for viruses:
          segments'
    description: Reports the number of replicons in a nuclear genome of eukaryotes,
      in the genome of a bacterium or archaea or the number of segments in a segmented
      virus. Always applied to the haploid chromosome count of a eukaryote
    title: number of replicons
    examples:
      - value: '2'
    in_subset:
      - nucleic acid sequence source
    keywords:
      - number
    string_serialization: '{integer}'
    slot_uri: MIXS:0000022
    range: integer
  num_samp_collect:
    description: The number of samples collected during the current sampling event
    title: number of samples collected
    examples:
      - value: 116 samples
    keywords:
      - number
      - sample
    slot_uri: MIXS:0001224
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  number_contig:
    description: Total number of contigs in the cleaned/submitted assembly that makes
      up a given genome, SAG, MAG, or UViG
    title: number of contigs
    examples:
      - value: '40'
    in_subset:
      - sequencing
    keywords:
      - number
    slot_uri: MIXS:0000060
    range: integer
  number_pets:
    description: The number of pets residing in the sampled space
    title: number of pets
    keywords:
      - number
    slot_uri: MIXS:0000231
    range: string
    pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{integer} {text}$
      interpolated: true
      partial_match: true
  number_plants:
    description: The number of plant(s) in the sampling space
    title: number of houseplants
    keywords:
      - number
    slot_uri: MIXS:0000230
    range: string
    pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{integer} {text}$
      interpolated: true
      partial_match: true
  number_resident:
    description: The number of individuals currently occupying in the sampling location
    title: number of residents
    keywords:
      - number
    slot_uri: MIXS:0000232
    range: string
    pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{integer} {text}$
      interpolated: true
      partial_match: true
  occup_density_samp:
    description: Average number of occupants at time of sampling per square footage
    title: occupant density at sampling
    examples:
      - value: '0.1'
    keywords:
      - density
    slot_uri: MIXS:0000217
    range: float
    required: true
  occup_document:
    description: The type of documentation of occupancy
    title: occupancy documentation
    examples:
      - value: estimate
    keywords:
      - documentation
    slot_uri: MIXS:0000816
    range: OccupDocumentEnum
  occup_samp:
    description: Number of occupants present at time of sample within the given space
    title: occupancy at sampling
    examples:
      - value: '10'
    slot_uri: MIXS:0000772
    range: float
    required: true
    pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{integer} {text}$
      interpolated: true
      partial_match: true
  org_carb:
    description: Concentration of organic carbon
    title: organic carbon
    examples:
      - value: 1.5 microgram per liter
    keywords:
      - carbon
      - organic
    slot_uri: MIXS:0000508
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  org_count_qpcr_info:
    annotations:
      Expected_value: gene name;FWD:forward primer sequence;REV:reverse primer sequence;initial
        denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
        elongation:degrees_minutes; total cycles
      Preferred_unit: number of cells per gram (or ml or cm^2)
    description: 'If qpcr was used for the cell count, the target gene name, the primer
      sequence and the cycling conditions should also be provided. (Example: 16S rrna;
      FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min;
      annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min;
      30 cycles)'
    title: organism count qPCR information
    keywords:
      - count
      - information
      - organism
    string_serialization: '{text};FWD:{dna};REV:{dna};initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
      elongation:degrees_minutes; total cycles'
    slot_uri: MIXS:0000099
  org_matter:
    annotations:
      Preferred_unit: microgram per liter
    description: Concentration of organic matter
    title: organic matter
    examples:
      - value: 1.75 milligram per cubic meter
    keywords:
      - organic
    slot_uri: MIXS:0000204
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  org_nitro:
    description: Concentration of organic nitrogen
    title: organic nitrogen
    examples:
      - value: 4 micromole per liter
    keywords:
      - nitrogen
      - organic
    slot_uri: MIXS:0000205
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  org_particles:
    annotations:
      Expected_value: particle name;measurement value
      Preferred_unit: gram per liter
    description: Concentration of particles such as faeces, hairs, food, vomit, paper
      fibers, plant material, humus, etc
    title: organic particles
    keywords:
      - organic
      - particle
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000665
    multivalued: true
  organism_count:
    annotations:
      Expected_value: organism name;measurement value;enumeration
    description: 'Total cell count of any organism (or group of organisms) per gram,
      volume or area of sample, should include name of organism followed by count.
      The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should
      also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
    title: organism count
    keywords:
      - count
      - organism
    string_serialization: '{text};{float} {unit};[ATP|MPN|qPCR|other]'
    slot_uri: MIXS:0000103
    multivalued: true
  otu_class_appr:
    annotations:
      Expected_value: cutoffs and method used
    description: Cutoffs and approach used when clustering  species-level  OTUs. Note
      that results from standard 95% ANI / 85% AF clustering should be provided alongside
      OTUS defined from another set of thresholds, even if the latter are the ones
      primarily used during the analysis
    title: OTU classification approach
    examples:
      - value: 95% ANI;85% AF; greedy incremental clustering
    in_subset:
      - sequencing
    keywords:
      - classification
      - otu
    string_serialization: '{ANI cutoff};{AF cutoff};{clustering method}'
    slot_uri: MIXS:0000085
  otu_db:
    annotations:
      Expected_value: database and version
    description: Reference database (i.e. sequences not generated as part of the current
      study) used to cluster new genomes in "species-level" OTUs, if any
    title: OTU database
    examples:
      - value: NCBI Viral RefSeq;83
    in_subset:
      - sequencing
    keywords:
      - database
      - otu
    string_serialization: '{database};{version}'
    slot_uri: MIXS:0000087
  otu_seq_comp_appr:
    annotations:
      Expected_value: software name, version and relevant parameters
    description: Tool and thresholds used to compare sequences when computing "species-level"
      OTUs
    title: OTU sequence comparison approach
    examples:
      - value: 'blastn;2.6.0+;e-value cutoff: 0.001'
    in_subset:
      - sequencing
    keywords:
      - otu
    string_serialization: '{software};{version};{parameters}'
    slot_uri: MIXS:0000086
  owc_tvdss:
    annotations:
      Preferred_unit: meter
    description: Depth of the original oil water contact (OWC) zone (average) (m TVDSS)
    title: oil water contact depth
    keywords:
      - depth
      - oil
      - water
    slot_uri: MIXS:0000405
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  oxy_stat_samp:
    description: Oxygenation status of sample
    title: oxygenation status of sample
    examples:
      - value: aerobic
    keywords:
      - oxygen
      - sample
      - status
    slot_uri: MIXS:0000753
    range: OxyStatSampEnum
  oxygen:
    annotations:
      Preferred_unit: milligram per liter, parts per million
    description: Oxygen (gas) amount or concentration at the time of sampling
    title: oxygen
    examples:
      - value: 600 parts per million
    keywords:
      - oxygen
    slot_uri: MIXS:0000104
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  part_org_carb:
    description: Concentration of particulate organic carbon
    title: particulate organic carbon
    examples:
      - value: 1.92 micromole per liter
    keywords:
      - carbon
      - organic
      - particle
      - particulate
    slot_uri: MIXS:0000515
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  part_org_nitro:
    annotations:
      Preferred_unit: microgram per liter, micromole per liter
    description: Concentration of particulate organic nitrogen
    title: particulate organic nitrogen
    examples:
      - value: 0.3 micromole per liter
    keywords:
      - nitrogen
      - organic
      - particle
      - particulate
    slot_uri: MIXS:0000719
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  part_plant_animal:
    annotations:
      Expected_value: FOODON:03420116
    description: The anatomical part of the organism being involved in food production
      or consumption; e.g., a carrot is the root of the plant (root vegetable). This
      field accepts terms listed under part of plant or animal (http://purl.obolibrary.org/obo/FOODON_03420116)
    title: part of plant or animal
    examples:
      - value: chuck [FOODON:03530021]
    keywords:
      - animal
      - plant
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001149
    multivalued: true
  particle_class:
    annotations:
      Expected_value: particle name;measurement value
      Preferred_unit: micrometer
    description: Particles are classified, based on their size, into six general categories:clay,
      silt, sand, gravel, cobbles, and boulders; should include amount of particle
      preceded by the name of the particle type; can include multiple values
    title: particle classification
    keywords:
      - classification
      - particle
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000206
    multivalued: true
  pathogenicity:
    annotations:
      Expected_value: names of organisms that the entity is pathogenic to
    description: To what is the entity pathogenic
    title: known pathogenicity
    examples:
      - value: human, animal, plant, fungi, bacteria
    in_subset:
      - nucleic acid sequence source
    range: string
    slot_uri: MIXS:0000027
  pcr_cond:
    annotations:
      Expected_value: initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
        elongation:degrees_minutes;total cycles
    description: Description of reaction conditions and components of polymerase chain reaction performed during library preparation.
    title: pcr conditions
    examples:
      - value: initial denaturation:94_3;annealing:50_1;elongation:72_1.5;final elongation:72_10;35
      - value: initial denaturation:94degC_1.5min
    in_subset:
      - sequencing
    keywords:
      - condition
      - pcr
    string_serialization: initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
      elongation:degrees_minutes;total cycles
    slot_uri: MIXS:0000049
  pcr_primers:
    annotations:
      Expected_value: 'FWD: forward primer sequence;REV:reverse primer sequence'
    description: PCR primers that were used to amplify the sequence of the targeted
      gene, locus or subfragment. This field should contain all the primers used for
      a single PCR reaction if multiple forward or reverse primers are present in
      a single PCR reaction. The primer sequence should be reported in uppercase letters
    title: pcr primers
    examples:
      - value: FWD:GTGCCAGCMGCCGCGGTAA;REV:GGACTACHVGGGTWTCTAAT
    in_subset:
      - sequencing
    keywords:
      - pcr
    string_serialization: FWD:{dna};REV:{dna}
    slot_uri: MIXS:0000046
  permeability:
    annotations:
      Expected_value: measurement value range
      Preferred_unit: mD
    description: 'Measure of the ability of a hydrocarbon resource to allow fluids
      to pass through it. (Additional information: https://en.wikipedia.org/wiki/Permeability_(earth_sciences))'
    title: permeability
    string_serialization: '{integer} - {integer} {unit}'
    slot_uri: MIXS:0000404
  perturbation:
    annotations:
      Expected_value: perturbation type name;perturbation interval and duration
    description: Type of perturbation, e.g. chemical administration, physical disturbance,
      etc., coupled with perturbation regimen including how many times the perturbation
      was repeated, how long each perturbation lasted, and the start and end time
      of the entire perturbation period; can include multiple perturbation types
    title: perturbation
    examples:
      - value: antibiotic addition;R2/2018-05-11T14:30Z/2018-05-11T19:30Z/P1H30M
    keywords:
      - perturbation
    string_serialization: '{text};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000754
    multivalued: true
  pesticide_regm:
    annotations:
      Preferred_unit: gram, mole per liter, milligram per liter
    description: Information about treatment involving use of insecticides; should
      include the name of pesticide, amount administered, treatment regimen including
      how many times the treatment was repeated, how long each treatment lasted, and
      the start and end time of the entire treatment; can include multiple pesticide
      regimens
    title: pesticide regimen
    examples:
      - value: pyrethrum;0.6 milligram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M
    keywords:
      - regimen
    slot_uri: MIXS:0000573
    multivalued: true
    range: string
  pet_farm_animal:
    annotations:
      Expected_value: presence status;type of animal or pet
    description: Specification of presence of pets or farm animals in the environment
      of subject, if yes the animals should be specified; can include multiple animals
      present
    title: presence of pets or farm animals
    examples:
      - value: yes; 5 cats
    keywords:
      - animal
      - farm
      - presence
    string_serialization: '{boolean};{text}'
    slot_uri: MIXS:0000267
    multivalued: true
  petroleum_hydrocarb:
    annotations:
      Preferred_unit: micromole per liter
    description: Concentration of petroleum hydrocarbon
    title: petroleum hydrocarbon
    examples:
      - value: 0.05 micromole per liter
    keywords:
      - hydrocarbon
      - petroleum
    slot_uri: MIXS:0000516
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  ph:
    description: Ph measurement of the sample, or liquid portion of sample, or aqueous
      phase of the fluid
    title: pH
    examples:
      - value: '7.2'
    keywords:
      - ph
    slot_uri: MIXS:0001001
    range: float
  ph_meth:
    description: Reference or method used in determining pH
    title: pH method
    examples:
      - value: https://www.epa.gov/sites/production/files/2015-12/documents/9040c.pdf
    keywords:
      - method
      - ph
    slot_uri: MIXS:0001106
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  ph_regm:
    description: Information about treatment involving exposure of plants to varying
      levels of ph of the growth media, treatment regimen including how many times
      the treatment was repeated, how long each treatment lasted, and the start and
      end time of the entire treatment; can include multiple regimen
    title: pH regimen
    examples:
      - value: 7.6;R2/2018-05-11:T14:30/2018-05-11T19:30/P1H30M
    keywords:
      - ph
      - regimen
    slot_uri: MIXS:0001056
    multivalued: true
    range: string
  phaeopigments:
    annotations:
      Expected_value: phaeopigment name;measurement value
      Preferred_unit: milligram per cubic meter
    description: Concentration of phaeopigments; can include multiple phaeopigments
    title: phaeopigments
    examples:
      - value: 2.5 milligram per cubic meter
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000180
    multivalued: true
  phosphate:
    annotations:
      Preferred_unit: micromole per liter
    description: Concentration of phosphate
    title: phosphate
    examples:
      - value: 0.7 micromole per liter
    keywords:
      - phosphate
    slot_uri: MIXS:0000505
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  phosplipid_fatt_acid:
    annotations:
      Expected_value: phospholipid fatty acid name;measurement value
    description: Concentration of phospholipid fatty acids; can include multiple values
    title: phospholipid fatty acid
    examples:
      - value: 2.98 milligram per liter
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000181
    multivalued: true
  photon_flux:
    annotations:
      Preferred_unit: number of photons per second per unit area
    description: Measurement of photon flux
    title: photon flux
    examples:
      - value: 3.926 micromole photons per second per square meter
    slot_uri: MIXS:0000725
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  photosynt_activ:
    annotations:
      Preferred_unit: mol m-2 s-1
    description: Measurement of photosythetic activity (i.e. leaf gas exchange / chlorophyll
      fluorescence emissions / reflectance / transpiration) Please also include the
      term method term detailing the method of activity measurement
    title: photosynthetic activity
    examples:
      - value: 0.1 mol CO2 m-2 s-1
        description: added a magnitude to the example from the XLSX file, " mol CO2
          m-2 s-1"
    slot_uri: MIXS:0001296
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  photosynt_activ_meth:
    description: Reference or method used in measurement of photosythetic activity
    title: photosynthetic activity method
    keywords:
      - method
    slot_uri: MIXS:0001336
    multivalued: true
    range: string
    recommended: true
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}|{text}$
      interpolated: true
      partial_match: true
  plant_growth_med:
    annotations:
      Expected_value: EO or enumeration
    description: Specification of the media for growing the plants or tissue cultured
      samples, e.g. soil, aeroponic, hydroponic, in vitro solid culture medium, in
      vitro liquid culture medium. Recommended value is a specific value from EO:plant
      growth medium (follow this link for terms http://purl.obolibrary.org/obo/EO_0007147)
      or other controlled vocabulary
    title: plant growth medium
    keywords:
      - growth
      - plant
    string_serialization: '{termLabel} [{termID}] or [husk|other artificial liquid
      medium|other artificial solid medium|peat moss|perlite|pumice|sand|soil|vermiculite|water]'
    slot_uri: MIXS:0001057
  plant_part_maturity:
    annotations:
      Expected_value: FOODON:03530050
    description: A description of the stage of development of a plant or plant part
      based on maturity or ripeness. This field accepts terms listed under degree
      of plant maturity (http://purl.obolibrary.org/obo/FOODON_03530050)
    title: degree of plant part maturity
    examples:
      - value: ripe or mature [FOODON:03530052]
    keywords:
      - degree
      - plant
    string_serialization: '{term label}{term ID}'
    slot_uri: MIXS:0001120
  plant_product:
    annotations:
      Expected_value: product name
    description: Substance produced by the plant, where the sample was obtained from
    title: plant product
    examples:
      - value: xylem sap [PO:0025539]
    keywords:
      - plant
      - product
    range: string
    slot_uri: MIXS:0001058
  plant_reprod_crop:
    description: Plant reproductive part used in the field during planting to start
      the crop
    title: plant reproductive part
    examples:
      - value: seedling
    keywords:
      - plant
    slot_uri: MIXS:0001150
    multivalued: true
    range: PlantReprodCropEnum
  plant_sex:
    description: Sex of the reproductive parts on the whole plant, e.g. pistillate,
      staminate, monoecieous, hermaphrodite
    title: plant sex
    examples:
      - value: Hermaphroditic
    keywords:
      - plant
    slot_uri: MIXS:0001059
    range: PlantSexEnum
  plant_struc:
    description: Name of plant structure the sample was obtained from; for Plant Ontology
      (PO) (v releases/2017-12-14) terms, see http://purl.bioontology.org/ontology/PO,
      e.g. petiole epidermis (PO_0000051). If an individual flower is sampled, the
      sex of it can be recorded here
    title: plant structure
    examples:
      - value: epidermis [PO:0005679]
    keywords:
      - plant
    slot_uri: MIXS:0001060
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  plant_water_method:
    description: Description of the equipment or method used to distribute water to
      crops. This field accepts termed listed under irrigation process (http://purl.obolibrary.org/obo/AGRO_00000006).
      Multiple terms can be separated by pipes
    title: plant water delivery method
    examples:
      - value: drip irrigation process [AGRO:00000056]
    keywords:
      - delivery
      - method
      - plant
      - water
    slot_uri: MIXS:0001111
    range: string
    recommended: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  ploidy:
    description: The ploidy level of the genome (e.g. allopolyploid, haploid, diploid,
      triploid, tetraploid). It has implications for the downstream study of duplicated
      gene and regions of the genomes (and perhaps for difficulties in assembly).
      For terms, please select terms listed under class ploidy (PATO:001374) of Phenotypic
      Quality Ontology (PATO), and for a browser of PATO (v 2018-03-27) please refer
      to http://purl.bioontology.org/ontology/PATO
    title: ploidy
    examples:
      - value: allopolyploidy [PATO:0001379]
    in_subset:
      - nucleic acid sequence source
    slot_uri: MIXS:0000021
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  pollutants:
    annotations:
      Expected_value: pollutant name;measurement value
      Preferred_unit: gram, mole per liter, milligram per liter, microgram per cubic meter
    description: Pollutant types and, amount or concentrations measured at the time
      of sampling; can report multiple pollutants by entering numeric values preceded
      by name of pollutant
    title: pollutants
    examples:
      - value: lead;0.15 microgram per cubic meter
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000107
    multivalued: true
  pool_dna_extracts:
    annotations:
      Expected_value: pooling status;number of pooled extracts
      Preferred_unit: gram, milliliter, microliter
    description: Indicate whether multiple DNA extractions were mixed. If the answer
      yes, the number of extracts that were pooled should be given
    title: pooling of DNA extracts (if done)
    examples:
      - value: yes, 5
    keywords:
      - dna
      - pooling
    slot_uri: MIXS:0000325
  porosity:
    annotations:
      Expected_value: measurement value or range
      Preferred_unit: percentage
    description: Porosity of deposited sediment is volume of voids divided by the
      total volume of sample
    title: porosity
    keywords:
      - porosity
    string_serialization: '{float} - {float} {unit}'
    slot_uri: MIXS:0000211
  pos_cont_type:
    description: The substance, mixture, product, or apparatus used to verify that
      a process which is part of an investigation delivers a true positive
    title: positive control type
    in_subset:
      - investigation
    keywords:
      - type
    string_serialization: '{term} or {text}'
    slot_uri: MIXS:0001322
    recommended: true
  potassium:
    annotations:
      Preferred_unit: milligram per liter, parts per million
    description: Concentration of potassium in the sample
    title: potassium
    examples:
      - value: 463 milligram per liter
    slot_uri: MIXS:0000430
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  pour_point:
    annotations:
      Preferred_unit: degree Celsius
    description: 'Temperature at which a liquid becomes semi solid and loses its flow
      characteristics. In crude oil a high  pour point  is generally associated with
      a high paraffin content, typically found in crude deriving from a larger proportion
      of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)'
    title: pour point
    slot_uri: MIXS:0000127
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  pre_treatment:
    annotations:
      Expected_value: pre-treatment type
    description: The process of pre-treatment removes materials that can be easily
      collected from the raw wastewater
    title: pre-treatment
    range: string
    slot_uri: MIXS:0000348
  pred_genome_struc:
    description: Expected structure of the viral genome
    title: predicted genome structure
    examples:
      - value: non-segmented
    in_subset:
      - sequencing
    keywords:
      - predict
    slot_uri: MIXS:0000083
    range: PredGenomeStrucEnum
  pred_genome_type:
    annotations:
      Expected_value: enumeration
    description: Type of genome predicted for the UViG
    title: predicted genome type
    examples:
      - value: dsDNA
    in_subset:
      - sequencing
    keywords:
      - predict
      - type
    string_serialization: '[DNA|dsDNA|ssDNA|RNA|dsRNA|ssRNA|ssRNA (+)|ssRNA (-)|mixed|uncharacterized]'
    slot_uri: MIXS:0000082
  pregnancy:
    description: Date due of pregnancy
    title: pregnancy
    examples:
      - value: '2013-03-25T12:42:31+01:00'
    slot_uri: MIXS:0000966
    range: datetime
  pres_animal_insect:
    annotations:
      Expected_value: enumeration;count
    description: The type and number of animals or insects present in the sampling
      space
    title: presence of pets, animals, or insects
    examples:
      - value: cat;5
    keywords:
      - animal
      - presence
    string_serialization: '[cat|dog|rodent|snake|other];{integer}'
    slot_uri: MIXS:0000819
  pressure:
    annotations:
      Preferred_unit: atmosphere
    description: Pressure to which the sample is subject to, in atmospheres
    title: pressure
    examples:
      - value: 50 atmosphere
    keywords:
      - pressure
    slot_uri: MIXS:0000412
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  prev_land_use_meth:
    description: Reference or method used in determining previous land use and dates
    title: history/previous land use method
    keywords:
      - history
      - land
      - method
      - use
    slot_uri: MIXS:0000316
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  previous_land_use:
    annotations:
      Expected_value: land use name;date
    description: Previous land use and dates
    title: history/previous land use
    examples:
      - value: fallow; 2018-05-11:T14:30Z
    keywords:
      - history
      - land
      - use
    string_serialization: '{text};{timestamp}'
    slot_uri: MIXS:0000315
  primary_prod:
    annotations:
      Preferred_unit: milligram per cubic meter per day, gram per square meter per day
    description: Measurement of primary production, generally measured as isotope
      uptake
    title: primary production
    examples:
      - value: 100 milligram per cubic meter per day
    keywords:
      - primary
      - production
    slot_uri: MIXS:0000728
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  primary_treatment:
    annotations:
      Expected_value: primary treatment type
    description: The process to produce both a generally homogeneous liquid capable
      of being treated biologically and a sludge that can be separately treated or
      processed
    title: primary treatment
    keywords:
      - primary
      - treatment
    range: string
    slot_uri: MIXS:0000349
  prod_label_claims:
    description: Labeling claims containing descriptors such as wild caught, free-range,
      organic, free-range, industrial, hormone-free, antibiotic free, cage free. Can
      include more than one term, separated by ";"
    title: production labeling claims
    examples:
      - value: free range
    keywords:
      - production
    slot_uri: MIXS:prod_label_claims
    multivalued: true
    range: string
  prod_rate:
    annotations:
      Preferred_unit: cubic meter per day
    description: Oil and/or gas production rates per well (e.g. 524 m3 / day)
    title: production rate
    keywords:
      - production
      - rate
    slot_uri: MIXS:0000452
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  prod_start_date:
    description: Date of field's first production
    title: production start date
    examples:
      - value: '2013-03-25T12:42:31+01:00'
    keywords:
      - date
      - production
      - start
    slot_uri: MIXS:0001008
    range: datetime
    recommended: true
  profile_position:
    description: Cross-sectional position in the hillslope where sample was collected.sample
      area position in relation to surrounding areas
    title: profile position
    examples:
      - value: summit
    slot_uri: MIXS:0001084
    range: ProfilePositionEnum
  project_name:
    description: Name of the project within which the sequencing was organized
    title: project name
    examples:
      - value: Forest soil metagenome
    in_subset:
      - investigation
    keywords:
      - project
    slot_uri: MIXS:0000092
    range: string
    required: true
  propagation:
    annotations:
      Expected_value: 'for virus: lytic, lysogenic, temperate, obligately lytic; for plasmid:
          incompatibility group; for eukaryote: asexual, sexual; other more specific
          values (e.g., incompatibility group) are allowed'
    description: 'The type of reproduction from the parent stock. Values for this
      field is specific to different taxa. For phage or virus: lytic/lysogenic/temperate/obligately
      lytic. For plasmids: incompatibility group. For eukaryotes: sexual/asexual'
    title: propagation
    examples:
      - value: lytic
    in_subset:
      - nucleic acid sequence source
    range: string
    slot_uri: MIXS:0000033
  pulmonary_disord:
    description: History of pulmonary disorders; can include multiple disorders. The
      terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org,
      lung disease (https://disease-ontology.org/?id=DOID:850)
    title: lung/pulmonary disorder
    keywords:
      - disorder
    slot_uri: MIXS:0000269
    multivalued: true
    range: string
  quad_pos:
    description: The quadrant position of the sampling room within the building
    title: quadrant position
    examples:
      - value: West side
    slot_uri: MIXS:0000820
    range: QuadPosEnum
  radiation_regm:
    annotations:
      Expected_value: radiation type name;radiation amount;treatment interval and duration
      Preferred_unit: rad, gray
    description: Information about treatment involving exposure of plant or a plant
      part to a particular radiation regimen; should include the radiation type, amount
      or intensity administered, treatment regimen including how many times the treatment
      was repeated, how long each treatment lasted, and the start and end time of
      the entire treatment; can include multiple radiation regimens
    title: radiation regimen
    examples:
      - value: gamma radiation;60 gray;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M
    keywords:
      - regimen
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000575
    multivalued: true
  rainfall_regm:
    annotations:
      Expected_value: measurement value;treatment interval and duration
      Preferred_unit: millimeter
    description: Information about treatment involving an exposure to a given amount
      of rainfall, treatment regimen including how many times the treatment was repeated,
      how long each treatment lasted, and the start and end time of the entire treatment;
      can include multiple regimens
    title: rainfall regimen
    examples:
      - value: 15 millimeter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M
    keywords:
      - rain
      - regimen
    string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000576
    multivalued: true
  reactor_type:
    annotations:
      Expected_value: reactor type name
    description: Anaerobic digesters can be designed and engineered to operate using
      a number of different process configurations, as batch or continuous, mesophilic,
      high solid or low solid, and single stage or multistage
    title: reactor type
    keywords:
      - type
    range: string
    slot_uri: MIXS:0000350
  reassembly_bin:
    description: Has an assembly been performed on a genome bin extracted from a metagenomic
      assembly?
    title: reassembly post binning
    examples:
      - value: 'no'
    in_subset:
      - sequencing
    keywords:
      - post
    slot_uri: MIXS:0000079
    range: boolean
  redox_potential:
    annotations:
      Preferred_unit: millivolt
    description: Redox potential, measured relative to a hydrogen cell, indicating
      oxidation or reduction potential
    title: redox potential
    examples:
      - value: 300 millivolt
    slot_uri: MIXS:0000182
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  ref_biomaterial:
    description: Primary publication if isolated before genome publication; otherwise,
      primary genome report
    title: reference for biomaterial
    examples:
      - value: doi:10.1016/j.syapm.2018.01.009
    in_subset:
      - nucleic acid sequence source
    slot_uri: MIXS:0000025
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  ref_db:
    annotations:
      Expected_value: names, versions, and references of databases
    description: List of database(s) used for ORF annotation, along with version number
      and reference to website or publication
    title: reference database(s)
    examples:
      - value: pVOGs;5;http://dmk-brain.ecn.uiowa.edu/pVOGs/ Grazziotin et al. 2017
          doi:10.1093/nar/gkw975
    in_subset:
      - sequencing
    keywords:
      - database
    string_serialization: '{database};{version};{reference}'
    slot_uri: MIXS:0000062
  rel_air_humidity:
    annotations:
      Preferred_unit: percentage
    description: Partial vapor and air pressure, density of the vapor and air, or
      by the actual mass of the vapor and air
    title: relative air humidity
    comments:
      - percent or float?
    examples:
      - value: '0.8'
    keywords:
      - air
      - humidity
      - relative
    slot_uri: MIXS:0000121
    range: float
    required: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  rel_humidity_out:
    annotations:
      Preferred_unit: gram of air, kilogram of air
    description: The recorded outside relative humidity value at the time of sampling
    title: outside relative humidity
    examples:
      - value: 12 per kilogram of air
    keywords:
      - humidity
      - relative
    slot_uri: MIXS:0000188
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  rel_location:
    description: Location of sampled soil to other parts of the farm e.g. under crop
      plant, near irrigation ditch, from the dirt road
    title: relative location of sample
    examples:
      - value: furrow
    keywords:
      - location
      - relative
      - sample
    slot_uri: MIXS:0001161
    range: string
  rel_samp_loc:
    description: The sampling location within the train car
    title: relative sampling location
    examples:
      - value: center of car
    keywords:
      - location
      - relative
    slot_uri: MIXS:0000821
    range: RelSampLocEnum
  rel_to_oxygen:
    description: Is this organism an aerobe, anaerobe? Please note that aerobic and
      anaerobic are valid descriptors for microbial environments
    title: relationship to oxygen
    examples:
      - value: aerobe
    in_subset:
      - nucleic acid sequence source
    keywords:
      - oxygen
      - relationship
    slot_uri: MIXS:0000015
    range: RelToOxygenEnum
  repository_name:
    annotations:
      Expected_value: Institution
    description: The name of the institution where the sample or DNA extract is held
      or "sample not available" if the sample was used in its entirety for analysis
      or otherwise not retained
    title: repository name
    examples:
      - value: FDA CFSAN Microbiology Laboratories
    range: string
    slot_uri: MIXS:0001152
    multivalued: true
  reservoir:
    description: Name of the reservoir (e.g. Carapebus)
    title: reservoir name
    slot_uri: MIXS:0000303
    range: string
    recommended: true
  resins_pc:
    annotations:
      Preferred_unit: percent
    description: 'Saturate, Aromatic, Resin and Asphaltene  (SARA) is an analysis
      method that divides  crude oil  components according to their polarizability
      and polarity. There are three main methods to obtain SARA results. The most
      popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
      https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
    title: resins wt%
    slot_uri: MIXS:0000134
    range: string
    recommended: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{name};{float} {unit}$
      interpolated: true
      partial_match: true
  room_air_exch_rate:
    annotations:
      Preferred_unit: liter per hour
    description: The rate at which outside air replaces indoor air in a given space
    title: room air exchange rate
    keywords:
      - air
      - rate
      - room
    slot_uri: MIXS:0000169
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  room_architec_elem:
    description: The unique details and component parts that, together, form the architecture
      of a distinguisahable space within a built structure
    title: room architectural elements
    keywords:
      - room
    slot_uri: MIXS:0000233
    range: string
  room_condt:
    description: The condition of the room at the time of sampling
    title: room condition
    examples:
      - value: new
    keywords:
      - condition
      - room
    slot_uri: MIXS:0000822
    range: RoomCondtEnum
  room_connected:
    description: List of rooms connected to the sampling room by a doorway
    title: rooms connected by a doorway
    examples:
      - value: office
    keywords:
      - doorway
      - room
    slot_uri: MIXS:0000826
    range: RoomConnectedEnum
  room_count:
    description: The total count of rooms in the built structure including all room
      types
    title: room count
    keywords:
      - count
      - room
    slot_uri: MIXS:0000234
    range: integer
  room_dim:
    annotations:
      Expected_value: measurement value
      Preferred_unit: meter
    description: The length, width and height of sampling room
    title: room dimensions
    examples:
      - value: 4 meter x 4 meter x 4 meter
    keywords:
      - dimensions
      - room
    string_serialization: '{integer} {unit} x {integer} {unit} x {integer} {unit}'
    slot_uri: MIXS:0000192
  room_door_dist:
    annotations:
      Preferred_unit: meter
    description: Distance between doors (meters) in the hallway between the sampling
      room and adjacent rooms
    title: room door distance
    keywords:
      - distance
      - door
      - room
    slot_uri: MIXS:0000193
    range: string
    pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{integer} {text}$
      interpolated: true
      partial_match: true
  room_door_share:
    description: List of room(s) (room number, room name) sharing a door with the
      sampling room
    title: rooms that share a door with sampling room
    keywords:
      - door
      - room
    slot_uri: MIXS:0000242
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[1-9][0-9]*$
    structured_pattern:
      syntax: ^{room_name};{room_number}$
      interpolated: true
      partial_match: true
  room_hallway:
    description: List of room(s) (room number, room name) located in the same hallway
      as sampling room
    title: rooms that are on the same hallway
    keywords:
      - hallway
      - room
    slot_uri: MIXS:0000238
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[1-9][0-9]*$
    structured_pattern:
      syntax: ^{room_name};{room_number}$
      interpolated: true
      partial_match: true
  room_loc:
    description: The position of the room within the building
    title: room location in building
    examples:
      - value: interior room
    keywords:
      - location
      - room
    slot_uri: MIXS:0000823
    range: RoomLocEnum
  room_moist_dam_hist:
    description: The history of moisture damage or mold in the past 12 months. Number
      of events of moisture damage or mold observed
    title: room moisture damage or mold history
    keywords:
      - history
      - moisture
      - room
    slot_uri: MIXS:0000235
    range: integer
  room_net_area:
    annotations:
      Preferred_unit: square feet, square meter
    description: The net floor area of sampling room. Net area excludes wall thicknesses
    title: room net area
    keywords:
      - area
      - room
    slot_uri: MIXS:0000194
    range: string
    pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{integer} {text}$
      interpolated: true
      partial_match: true
  room_occup:
    description: Count of room occupancy at time of sampling
    title: room occupancy
    keywords:
      - room
    slot_uri: MIXS:0000236
    range: string
    pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{integer} {text}$
      interpolated: true
      partial_match: true
  room_samp_pos:
    description: The horizontal sampling position in the room relative to architectural
      elements
    title: room sampling position
    examples:
      - value: south corner
    keywords:
      - room
    slot_uri: MIXS:0000824
    range: RoomSampPosEnum
  room_type:
    annotations:
      Expected_value: enumeration
    description: The main purpose or activity of the sampling room. A room is any
      distinguishable space within a structure
    title: room type
    examples:
      - value: bathroom
    keywords:
      - room
      - type
    string_serialization: '[attic|bathroom|closet|conference room|elevator|examining
      room|hallway|kitchen|mail room|private office|open office|stairwell|,restroom|lobby|vestibule|mechanical
      or electrical room|data center|laboratory_wet|laboratory_dry|gymnasium|natatorium|auditorium|lockers|cafe|warehouse]'
    slot_uri: MIXS:0000825
  room_vol:
    annotations:
      Preferred_unit: cubic feet, cubic meter
    description: Volume of sampling room
    title: room volume
    keywords:
      - room
      - volume
    slot_uri: MIXS:0000195
    range: string
    pattern: ^[1-9][0-9]* ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{integer} {text}$
      interpolated: true
      partial_match: true
  room_wall_share:
    description: List of room(s) (room number, room name) sharing a wall with the
      sampling room
    title: rooms that share a wall with sampling room
    keywords:
      - room
      - wall
    slot_uri: MIXS:0000243
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[1-9][0-9]*$
    structured_pattern:
      syntax: ^{room_name};{room_number}$
      interpolated: true
      partial_match: true
  room_window_count:
    description: Number of windows in the room
    title: room window count
    keywords:
      - count
      - room
      - window
    slot_uri: MIXS:0000237
    range: integer
  root_cond:
    description: Relevant rooting conditions such as field plot size, sowing density,
      container dimensions, number of plants per container
    title: rooting conditions
    examples:
      - value: http://himedialabs.com/TD/PT158.pdf
    keywords:
      - condition
    slot_uri: MIXS:0001061
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}|{text}$
      interpolated: true
      partial_match: true
  root_med_carbon:
    annotations:
      Expected_value: carbon source name;measurement value
      Preferred_unit: milligram per liter
    description: Source of organic carbon in the culture rooting medium; e.g. sucrose
    title: rooting medium carbon
    examples:
      - value: sucrose
    keywords:
      - carbon
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000577
  root_med_macronutr:
    annotations:
      Expected_value: macronutrient name;measurement value
      Preferred_unit: milligram per liter
    description: Measurement of the culture rooting medium macronutrients (N,P, K,
      Ca, Mg, S); e.g. KH2PO4 (170 mg/L)
    title: rooting medium macronutrients
    examples:
      - value: KH2PO4;170  milligram per liter
    keywords:
      - macronutrients
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000578
  root_med_micronutr:
    annotations:
      Expected_value: micronutrient name;measurement value
      Preferred_unit: milligram per liter
    description: Measurement of the culture rooting medium micronutrients (Fe, Mn,
      Zn, B, Cu, Mo); e.g. H3BO3 (6.2 mg/L)
    title: rooting medium micronutrients
    examples:
      - value: H3BO3;6.2  milligram per liter
    keywords:
      - micronutrients
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000579
  root_med_ph:
    description: pH measurement of the culture rooting medium; e.g. 5.5
    title: rooting medium pH
    examples:
      - value: '7.5'
    keywords:
      - ph
    slot_uri: MIXS:0001062
    range: float
  root_med_regl:
    annotations:
      Expected_value: regulator name;measurement value
      Preferred_unit: milligram per liter
    description: Growth regulators in the culture rooting medium such as cytokinins,
      auxins, gybberellins, abscisic acid; e.g. 0.5  mg/L NAA
    title: rooting medium regulators
    examples:
      - value: abscisic acid;0.75 milligram per liter
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000581
  root_med_solid:
    description: Specification of the solidifying agent in the culture rooting medium;
      e.g. agar
    title: rooting medium solidifier
    examples:
      - value: agar
    slot_uri: MIXS:0001063
    range: string
  root_med_suppl:
    annotations:
      Expected_value: supplement name;measurement value
      Preferred_unit: milligram per liter
    description: Organic supplements of the culture rooting medium, such as vitamins,
      amino acids, organic acids, antibiotics activated charcoal; e.g. nicotinic acid
      (0.5  mg/L)
    title: rooting medium organic supplements
    examples:
      - value: nicotinic acid;0.5 milligram per liter
    keywords:
      - organic
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000580
  route_transmission:
    description: Description of path taken by the symbiotic host organism being sampled
      in order to establish a symbiotic relationship with the host (with which it
      was observed at the time of sampling) via a mode of transmission (specified
      in mode_transmission)
    title: route of transmission
    keywords:
      - route
    slot_uri: MIXS:0001316
    range: RouteTransmissionEnum
  salinity:
    annotations:
      Preferred_unit: practical salinity unit, percentage
    description: The total concentration of all dissolved salts in a liquid or solid
      sample. While salinity can be measured by a complete chemical analysis, this
      method is difficult and time consuming. More often, it is instead derived from
      the conductivity measurement. This is known as practical salinity. These derivations
      compare the specific conductance of the sample to a salinity standard such as
      seawater
    title: salinity
    examples:
      - value: 25 practical salinity unit
    keywords:
      - salinity
    slot_uri: MIXS:0000183
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  salt_regm:
    annotations:
      Preferred_unit: gram, microgram, mole per liter, gram per liter
    description: Information about treatment involving use of salts as supplement
      to liquid and soil growth media; should include the name of salt, amount administered,
      treatment regimen including how many times the treatment was repeated, how long
      each treatment lasted, and the start and end time of the entire treatment; can
      include multiple salt regimens
    title: salt regimen
    examples:
      - value: NaCl;5 gram per liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M
    keywords:
      - regimen
      - salt
    slot_uri: MIXS:0000582
    multivalued: true
    range: string
  samp_capt_status:
    description: Reason for the sample
    title: sample capture status
    examples:
      - value: farm sample
    keywords:
      - sample
      - status
    slot_uri: MIXS:0000860
    range: SampCaptStatusEnum
  samp_collect_device:
    annotations:
      Expected_value: device name
    description: The device used to collect an environmental sample. This field accepts
      terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO).
      This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094)
    title: sample collection device
    in_subset:
      - nucleic acid sequence source
    keywords:
      - device
      - sample
    string_serialization: '{termLabel} [{termID}]|{text}'
    slot_uri: MIXS:0000002
  samp_collect_method:
    description: The method employed for collecting the sample
    title: sample collection method
    in_subset:
      - nucleic acid sequence source
    keywords:
      - method
      - sample
    slot_uri: MIXS:0001225
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}|{text}$
      interpolated: true
      partial_match: true
  samp_collect_point:
    description: Sampling point on the asset were sample was collected (e.g. Wellhead,
      storage tank, separator, etc). If "other" is specified, please propose entry
      in "additional info" field
    title: sample collection point
    examples:
      - value: well
    keywords:
      - sample
    slot_uri: MIXS:0001015
    range: SampCollectPointEnum
    required: true
  samp_dis_stage:
    description: Stage of the disease at the time of sample collection, e.g. inoculation,
      penetration, infection, growth and reproduction, dissemination of pathogen
    title: sample disease stage
    examples:
      - value: infection
    keywords:
      - disease
      - sample
    slot_uri: MIXS:0000249
    range: SampDisStageEnum
  samp_floor:
    annotations:
      Expected_value: enumeration
    description: The floor of the building, where the sampling room is located
    title: sampling floor
    examples:
      - value: 4th floor
    keywords:
      - floor
    string_serialization: '[1st floor|2nd floor|{integer} floor|basement|lobby]'
    slot_uri: MIXS:0000828
  samp_loc_condition:
    description: The condition of the sample location at the time of sampling
    title: sample location condition
    examples:
      - value: new
    keywords:
      - condition
      - location
      - sample
    slot_uri: MIXS:0001257
    range: SampLocConditionEnum
  samp_loc_corr_rate:
    annotations:
      Preferred_unit: millimeter per year
    description: Metal corrosion rate is the speed of metal deterioration due to environmental
      conditions. As environmental conditions change corrosion rates change accordingly.
      Therefore, long term corrosion rates are generally more informative than short
      term rates and for that reason they are preferred during reporting. In the case
      of suspected MIC, corrosion rate measurements at the time of sampling might
      provide insights into the involvement of certain microbial community members
      in MIC as well as potential microbial interplays
    title: corrosion rate at sample location
    keywords:
      - location
      - rate
      - sample
    slot_uri: MIXS:0000136
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+ *- *[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{float} *- *{float} {unit}$
      interpolated: true
      partial_match: true
  samp_mat_process:
    description: A brief description of any processing applied to the sample during
      or after retrieving the sample from environment, or a link to the relevant protocol(s)
      performed
    title: sample material processing
    examples:
      - value: filtering of seawater, storing samples in ethanol
    in_subset:
      - nucleic acid sequence source
    keywords:
      - material
      - process
      - sample
    slot_uri: MIXS:0000016
    range: string
  samp_md:
    annotations:
      Expected_value: measurement value;enumeration
      Preferred_unit: meter
    description: In non deviated well, measured depth is equal to the true vertical
      depth, TVD (TVD=TVDSS plus the reference or datum it refers to). In deviated
      wells, the MD is the length of trajectory of the borehole measured from the
      same reference or datum. Common datums used are ground level (GL), drilling
      rig floor (DF), rotary table (RT), kelly bushing (KB) and mean sea level (MSL).
      If "other" is specified, please propose entry in "additional info" field
    title: sample measured depth
    examples:
      - value: 1534 meter;MSL
    keywords:
      - depth
      - measurement
      - sample
    string_serialization: '{float} {unit};[GL|DF|RT|KB|MSL|other]'
    slot_uri: MIXS:0000413
  samp_name:
    annotations:
      Preferred_unit: ''
    description: A local identifier or name that for the material sample used for
      extracting nucleic acids, and subsequent sequencing. It can refer either to
      the original material collected or to any derived sub-samples. It can have any
      format, but we suggest that you make it concise, unique and consistent within
      your lab, and as informative as possible. INSDC requires every sample name from
      a single Submitter to be unique. Use of a globally unique identifier for the
      field source_mat_id is recommended in addition to sample_name
    title: sample name
    examples:
      - value: ISDsoil1
    in_subset:
      - investigation
    keywords:
      - sample
    slot_uri: MIXS:0001107
    range: string
    required: true
  samp_pooling:
    description: Physical combination of several instances of like material, e.g.
      RNA extracted from samples or dishes of cell cultures into one big aliquot of
      cells. Please provide a short description of the samples that were pooled
    title: sample pooling
    examples:
      - value: 5uL of extracted genomic DNA from 5 leaves were pooled
    keywords:
      - pooling
      - sample
    slot_uri: MIXS:0001153
    multivalued: true
    range: string
  samp_preserv:
    annotations:
      Preferred_unit: milliliter
    description: Preservative added to the sample (e.g. Rnalater, alcohol, formaldehyde,
      etc.). Where appropriate include volume added (e.g. Rnalater; 2 ml)
    title: preservative added to sample
    keywords:
      - sample
    slot_uri: MIXS:0000463
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{name};{float} {unit}$
      interpolated: true
      partial_match: true
  samp_purpose:
    annotations:
      Expected_value: enumeration or {text}
    description: The reason that the sample was collected
    title: purpose of sampling
    examples:
      - value: field trial
    keywords:
      - purpose
    string_serialization: '[active surveillance in response to an outbreak|active
      surveillance not initiated by an outbreak|clinical trial|cluster investigation|environmental
      assessment|farm sample|field trial|for cause|industry internal investigation|market
      sample|passive surveillance|population based studies|research|research and development]
      or {text}'
    slot_uri: MIXS:0001151
  samp_rep_biol:
    description: Measurements of biologically distinct samples that show biological
      variation
    title: biological sample replicate
    examples:
      - value: 6 replicates
    keywords:
      - sample
    slot_uri: MIXS:0001226
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  samp_rep_tech:
    description: Repeated measurements of the same sample that show independent measures
      of the noise associated with the equipment and the protocols
    title: technical sample replicate
    examples:
      - value: 10 replicates
    keywords:
      - sample
    slot_uri: MIXS:0001227
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  samp_room_id:
    description: Sampling room number. This ID should be consistent with the designations
      on the building floor plans
    title: sampling room ID or name
    keywords:
      - identifier
      - room
    slot_uri: MIXS:0000244
    range: integer
  samp_size:
    description: The total amount or size (volume (ml), mass (g) or area (m2) ) of
      sample collected
    title: amount or size of sample collected
    examples:
      - value: 5 liter
    in_subset:
      - nucleic acid sequence source
    keywords:
      - sample
      - size
    slot_uri: MIXS:0000001
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  samp_sort_meth:
    description: Method by which samples are sorted; open face filter collecting total
      suspended particles, prefilter to remove particles larger than X micrometers
      in diameter, where common values of X would be 10 and 2.5 full size sorting
      in a cascade impactor
    title: sample size sorting method
    keywords:
      - method
      - sample
      - size
    slot_uri: MIXS:0000216
    multivalued: true
    range: string
  samp_source_mat_cat:
    annotations:
      Expected_value: GENEPIO:0001237
    description: This is the scientific role or category that the subject organism
      or material has with respect to an investigation.  This field accepts terms
      listed under specimen source material category (http://purl.obolibrary.org/obo/GENEPIO_0001237
      or http://purl.obolibrary.org/obo/OBI_0100051)
    title: sample source material category
    examples:
      - value: environmental (swab or sampling) [GENEPIO:0001732]
    keywords:
      - material
      - sample
      - source
    string_serialization: '{termLabel} [{termID}]'
    slot_uri: MIXS:0001154
  samp_stor_device:
    annotations:
      Expected_value: NCIT:C4318
    description: The container used to store the  sample. This field accepts terms
      listed under container (http://purl.obolibrary.org/obo/NCIT_C43186). If the
      proper descriptor is not listed please use text to describe the storage device
    title: sample storage device
    examples:
      - value: Whirl Pak sampling bag [GENEPIO:0002122]
    keywords:
      - device
      - sample
      - storage
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001228
  samp_stor_media:
    description: The liquid that is added to the sample collection device prior to
      sampling. If the sample is pre-hydrated, indicate the liquid media the sample
      is pre-hydrated with for storage purposes. This field accepts terms listed under
      microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067).
      If the proper descriptor is not listed please use text to describe the sample
      storage media
    title: sample storage media
    examples:
      - value: peptone water medium [MICRO:0000548]
    keywords:
      - sample
      - storage
    slot_uri: MIXS:0001229
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$
    structured_pattern:
      syntax: ^{text}|({termLabel} \[{termID}\])$
      interpolated: true
      partial_match: true
  samp_store_dur:
    description: Duration for which the sample was stored. Indicate the duration for
      which the sample was stored written in ISO 8601 format
    title: sample storage duration
    examples:
      - value: P1Y6M
    keywords:
      - duration
      - period
      - sample
      - storage
    slot_uri: MIXS:0000116
    range: string
    pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$
    structured_pattern:
      syntax: ^{duration}$
      interpolated: true
      partial_match: true
  samp_store_loc:
    annotations:
      Expected_value: location name
    description: Location at which sample was stored, usually name of a specific freezer/room
    title: sample storage location
    examples:
      - value: Freezer no:5
    keywords:
      - location
      - sample
      - storage
    range: string
    slot_uri: MIXS:0000755
  samp_store_sol:
    annotations:
      Expected_value: solution name
    description: Solution within which sample was stored, if any
    title: sample storage solution
    examples:
      - value: 5% ethanol
    keywords:
      - sample
      - storage
    range: string
    slot_uri: MIXS:0001317
  samp_store_temp:
    annotations:
      Preferred_unit: degree Celsius
    description: Temperature at which sample was stored, e.g. -80 degree Celsius
    title: sample storage temperature
    examples:
      - value: -80 degree Celsius
    keywords:
      - sample
      - storage
      - temperature
    slot_uri: MIXS:0000110
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  samp_subtype:
    description: Name of sample sub-type. For example if "sample type" is "Produced
      Water" then subtype could be "Oil Phase" or "Water Phase". If "other" is specified,
      please propose entry in "additional info" field
    title: sample subtype
    examples:
      - value: biofilm
    keywords:
      - sample
    slot_uri: MIXS:0000999
    range: SampSubtypeEnum
    recommended: true
  samp_surf_moisture:
    description: Degree of water held on a sampled surface.  If present, user can
      state the degree of water held on surface (intermittent moisture, submerged).
      If no surface moisture is present indicate not present
    title: sample surface moisture
    examples:
      - value: submerged
    keywords:
      - moisture
      - sample
      - surface
    slot_uri: MIXS:0001256
    multivalued: true
    range: SampSurfMoistureEnum
  samp_taxon_id:
    description: NCBI taxon id of the sample.  Maybe be a single taxon or mixed taxa
      sample. Use 'synthetic metagenome  for mock community/positive controls, or
      'blank sample' for negative controls
    title: taxonomy ID of DNA sample
    examples:
      - value: Gut Metagenome [NCBITaxon:749906]
    in_subset:
      - investigation
    keywords:
      - dna
      - identifier
      - sample
      - taxon
    slot_uri: MIXS:0001320
    range: string
    required: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[NCBITaxon:\d+\]$
    structured_pattern:
      syntax: ^{text} \[{NCBItaxon_id}\]$
      interpolated: true
      partial_match: true
  samp_time_out:
    annotations:
      Expected_value: time
      Preferred_unit: hour
    description: The recent and long term history of outside sampling
    title: sampling time outside
    keywords:
      - time
    string_serialization: '{float}'
    slot_uri: MIXS:0000196
  samp_transport_cond:
    annotations:
      Expected_value: measurement value;measurement value
      Preferred_unit: days;degree Celsius
    description: Sample transport duration (in days or hrs) and temperature the sample
      was exposed to (e.g. 5.5 days; 20   C)
    title: sample transport conditions
    examples:
      - value: 5 days;-20 degree Celsius
    keywords:
      - condition
      - sample
      - transport
    string_serialization: '{float} {unit};{float} {unit}'
    slot_uri: MIXS:0000410
  samp_transport_cont:
    description: Conatiner in which the sample was stored during transport. Indicate
      the location name
    title: sample transport  container
    examples:
      - value: cooler
    keywords:
      - sample
      - transport
    slot_uri: MIXS:0001230
    range: SampTransportContEnum
  samp_transport_dur:
    annotations:
      Preferred_unit: days
    description: The duration of time from when the sample was collected until processed.
      Indicate the duration for which the sample was stored written in ISO 8601 format
    title: sample transport duration
    examples:
      - value: P10D
    keywords:
      - duration
      - period
      - sample
      - transport
    slot_uri: MIXS:0001231
    range: string
    pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$
    structured_pattern:
      syntax: ^{duration}$
      interpolated: true
      partial_match: true
  samp_transport_temp:
    annotations:
      Expected_value: text or measurement value
      Preferred_unit: degree Celsius
    description: Temperature at which sample was transported, e.g. -20 or 4 degree
      Celsius
    title: sample transport temperature
    examples:
      - value: 4 degree Celsius
    keywords:
      - sample
      - temperature
      - transport
    string_serialization: '{float} {unit} {text}'
    slot_uri: MIXS:0001232
  samp_tvdss:
    annotations:
      Expected_value: measurement value or measurement value range
      Preferred_unit: meter
    description: Depth of the sample i.e. The vertical distance between the sea level
      and the sampled position in the subsurface. Depth can be reported as an interval
      for subsurface samples e.g. 1325.75-1362.25 m
    title: sample true vertical depth subsea
    keywords:
      - depth
      - sample
    string_serialization: '{float}-{float} {unit}'
    slot_uri: MIXS:0000409
    recommended: true
  samp_type:
    description: The type of material from which the sample was obtained. For the
      Hydrocarbon package, samples include types like core, rock trimmings, drill
      cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid,
      produced water, injected water, swabs, etc. For the Food Package, samples are
      usually categorized as food, body products or tissues, or environmental material.
      This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246)
    title: sample type
    examples:
      - value: built environment sample [GENEPIO:0001248]
    keywords:
      - sample
      - type
    slot_uri: MIXS:0000998
    range: string
    required: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  samp_vol_we_dna_ext:
    annotations:
      Preferred_unit: milliliter, gram, milligram, square centimeter
    description: 'Volume (ml) or mass (g) of total collected sample processed for
      DNA extraction. Note: total sample collected should be entered under the term
      Sample Size (MIXS:0000001)'
    title: sample volume or weight for DNA extraction
    examples:
      - value: 1500 milliliter
    in_subset:
      - nucleic acid sequence source
    keywords:
      - dna
      - sample
      - volume
      - weight
    slot_uri: MIXS:0000111
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  samp_weather:
    description: The weather on the sampling day
    title: sampling day weather
    examples:
      - value: foggy
    keywords:
      - day
      - weather
    slot_uri: MIXS:0000827
    range: SampWeatherEnum
  samp_well_name:
    description: Name of the well (e.g. BXA1123) where sample was taken
    title: sample well name
    keywords:
      - sample
    slot_uri: MIXS:0000296
    range: string
    recommended: true
  saturates_pc:
    annotations:
      Preferred_unit: percent
    description: 'Saturate, Aromatic, Resin and Asphaltene  (SARA) is an analysis
      method that divides  crude oil  components according to their polarizability
      and polarity. There are three main methods to obtain SARA results. The most
      popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
      https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
    title: saturates wt%
    slot_uri: MIXS:0000131
    range: string
    recommended: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);[-+]?[0-9]*\.?[0-9]+ ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{name};{float} {unit}$
      interpolated: true
      partial_match: true
  sc_lysis_approach:
    description: Method used to free DNA from interior of the cell(s) or particle(s)
    title: single cell or viral particle lysis approach
    examples:
      - value: enzymatic
    in_subset:
      - sequencing
    keywords:
      - particle
      - single
    slot_uri: MIXS:0000076
    range: ScLysisApproachEnum
  sc_lysis_method:
    annotations:
      Expected_value: kit, protocol name
    description: Name of the kit or standard protocol used for cell(s) or particle(s)
      lysis
    title: single cell or viral particle lysis kit protocol
    examples:
      - value: ambion single cell lysis kit
    in_subset:
      - sequencing
    keywords:
      - kit
      - particle
      - protocol
      - single
    range: string
    slot_uri: MIXS:0000054
  season:
    annotations:
      Expected_value: autumn [NCIT:C94733], spring [NCIT:C94731], summer [NCIT:C94732], winter
        [NCIT:C94730]
    description: The season when sampling occurred. Any of the four periods into which
      the year is divided by the equinoxes and solstices. This field accepts terms
      listed under season (http://purl.obolibrary.org/obo/NCIT_C94729)
    title: season
    comments:
      - autumn [NCIT:C94733] does not match ^\\S+.*\\S+ \\[[a-zA-Z]{2,}:\\d+\\]$
      - would require ^\\S+.*\\S+ \\[[a-zA-Z]{2,}:[a-zA-Z0-9]\\]$
    examples:
      - value: autumn [NCIT:C94733]
    keywords:
      - season
    string_serialization: '{termLabel} [{termID}]'
    slot_uri: MIXS:0000829
    range: string
    pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:[a-zA-Z0-9]+\]$
  season_environment:
    description: Treatment involving an exposure to a particular season (e.g. Winter,
      summer, rabi, rainy etc.), treatment regimen including how many times the treatment
      was repeated, how long each treatment lasted, and the start and end time of
      the entire treatment
    title: seasonal environment
    examples:
      - value: rainy;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M
    keywords:
      - environment
      - season
    slot_uri: MIXS:0001068
    multivalued: true
    range: string
  season_humidity:
    description: Average humidity of the region throughout the growing season
    title: mean seasonal humidity
    comments:
      - percent or float?
    examples:
      - value: '0.25'
    keywords:
      - humidity
      - mean
      - season
    slot_uri: MIXS:0001148
    range: float
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  season_precpt:
    annotations:
      Preferred_unit: millimeter
    description: The average of all seasonal precipitation values known, or an estimated
      equivalent value derived by such methods as regional indexes or Isohyetal maps
    title: mean seasonal precipitation
    examples:
      - value: 75 millimeters
    keywords:
      - mean
      - season
    slot_uri: MIXS:0000645
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  season_temp:
    annotations:
      Preferred_unit: degree Celsius
    description: Mean seasonal temperature
    title: mean seasonal temperature
    examples:
      - value: 18 degree Celsius
    keywords:
      - mean
      - season
      - temperature
    slot_uri: MIXS:0000643
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  season_use:
    description: The seasons the space is occupied
    title: seasonal use
    examples:
      - value: Winter
    keywords:
      - season
      - use
    slot_uri: MIXS:0000830
    range: SeasonUseEnum
  secondary_treatment:
    annotations:
      Expected_value: secondary treatment type
    description: The process for substantially degrading the biological content of
      the sewage
    title: secondary treatment
    keywords:
      - secondary
      - treatment
    range: string
    slot_uri: MIXS:0000351
  sediment_type:
    description: Information about the sediment type based on major constituents
    title: sediment type
    examples:
      - value: biogenous
    keywords:
      - sediment
      - type
    slot_uri: MIXS:0001078
    range: SedimentTypeEnum
  seq_meth:
    description: Sequencing machine used. Where possible the term should be taken
      from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103)
    title: sequencing method
    examples:
      - value: 454 Genome Sequencer FLX [OBI:0000702]
    in_subset:
      - sequencing
    keywords:
      - method
    slot_uri: MIXS:0000050
    range: string
    required: true
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$
    structured_pattern:
      syntax: ^{text}|({termLabel} \[{termID}\])$
      interpolated: true
      partial_match: true
  seq_quality_check:
    annotations:
      Expected_value: none or manually edited
    description: Indicate if the sequence has been called by automatic systems (none)
      or undergone a manual editing procedure (e.g. by inspecting the raw data or
      chromatograms). Applied only for sequences that are not submitted to SRA,ENA
      or DRA
    title: sequence quality check
    examples:
      - value: none
    in_subset:
      - sequencing
    keywords:
      - quality
    slot_uri: MIXS:0000051
    range: SeqQualityCheckEnum
  sequencing_kit:
    annotations:
      Expected_value: name of sequencing kit used
    description: Pre-filled, ready-to-use reagent cartridges. Used to produce improved
      chemistry, cluster density and read length as well as improve quality (Q) scores.
      Reagent components are encoded to interact with the sequencing system to validate
      compatibility with user-defined applications. Indicate name of the sequencing
      kit
    title: sequencing kit
    examples:
      - value: NextSeq 500/550 High Output Kit v2.5 (75 Cycles)
    keywords:
      - kit
    range: string
    slot_uri: MIXS:0001155
  sequencing_location:
    description: The location the sequencing run was performed. Indicate the name
      of the lab or core facility where samples were sequenced
    title: sequencing location
    examples:
      - value: University of Maryland Genomics Resource Center
    keywords:
      - location
    slot_uri: MIXS:0001156
    range: string
  serovar_or_serotype:
    description: A characterization of a cell or microorganism based on the antigenic
      properties of the molecules on its surface. Indicate the name of a serovar or
      serotype of interest. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250).
      This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy
    title: serovar or serotype
    examples:
      - value: Escherichia coli strain O157:H7 [NCIT:C86883]
    slot_uri: MIXS:0001157
    multivalued: true
    range: string
    pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$
    structured_pattern:
      syntax: ^({termLabel} \[{termID}\])|{integer}$
      interpolated: true
      partial_match: true
  sewage_type:
    annotations:
      Expected_value: sewage type name
    description: Type of wastewater treatment plant as municipial or industrial
    title: sewage type
    keywords:
      - type
    range: string
    slot_uri: MIXS:0000215
  sexual_act:
    annotations:
      Expected_value: partner sex;frequency
    description: Current sexual partner and frequency of sex
    title: sexual activity
    range: string
    slot_uri: MIXS:0000285
  shad_dev_water_mold:
    description: Signs of the presence of mold or mildew on the shading device
    title: shading device signs of water/mold
    examples:
      - value: no presence of mold visible
    keywords:
      - device
    slot_uri: MIXS:0000834
    range: MoldVisibilityEnum
  shading_device_cond:
    description: The physical condition of the shading device at the time of sampling
    title: shading device condition
    examples:
      - value: new
    keywords:
      - condition
      - device
    slot_uri: MIXS:0000831
    range: DamagedRupturedEnum
  shading_device_loc:
    description: The location of the shading device in relation to the built structure
    title: shading device location
    examples:
      - value: exterior
    keywords:
      - device
      - location
    slot_uri: MIXS:0000832
    range: ShadingDeviceLocEnum
  shading_device_mat:
    annotations:
      Expected_value: material name
    description: The material the shading device is composed of
    title: shading device material
    keywords:
      - device
      - material
    range: string
    slot_uri: MIXS:0000245
  shading_device_type:
    description: The type of shading device
    title: shading device type
    examples:
      - value: slatted aluminum
        description: was slatted aluminum awning
    keywords:
      - device
      - type
    slot_uri: MIXS:0000835
    range: ShadingDeviceTypeEnum
  sieving:
    annotations:
      Expected_value: design name and/or size;amount
    description: Collection design of pooled samples and/or sieve size and amount
      of sample sieved
    title: sieving
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000322
  silicate:
    annotations:
      Preferred_unit: micromole per liter
    description: Concentration of silicate
    title: silicate
    examples:
      - value: 0.05 micromole per liter
    slot_uri: MIXS:0000184
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  sim_search_meth:
    description: Tool used to compare ORFs with database, along with version and cutoffs
      used
    title: similarity search method
    examples:
      - value: HMMER3;3.1b2;hmmsearch, cutoff of 50 on score
    in_subset:
      - sequencing
    keywords:
      - method
    slot_uri: MIXS:0000063
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{software};{version};{parameters}$
      interpolated: true
      partial_match: true
  size_frac:
    annotations:
      Expected_value: filter size value range
    description: Filtering pore size used in sample preparation
    title: size fraction selected
    examples:
      - value: 0-0.22 micrometer
    in_subset:
      - nucleic acid sequence source
    keywords:
      - fraction
      - size
    string_serialization: '{float}-{float} {unit}'
    slot_uri: MIXS:0000017
  size_frac_low:
    annotations:
      Preferred_unit: micrometer
    description: Refers to the mesh/pore size used to pre-filter/pre-sort the sample. Materials smaller than the size threshold are excluded from the sample
    title: size-fraction lower threshold
    examples:
      - value: 0.2 micrometer
    keywords:
      - lower
    slot_uri: MIXS:0000735
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  size_frac_up:
    annotations:
      Preferred_unit: micrometer
    description: Mesh or pore size of the device used to retain the sample. Materials larger than the size threshold are excluded from the sample.
    title: size-fraction upper threshold
    examples:
      - value: 20 micrometer
    keywords:
      - upper
    slot_uri: MIXS:0000736
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  slope_aspect:
    annotations:
      Preferred_unit: degree
    description: The direction a slope faces. While looking down a slope use a compass
      to record the direction you are facing (direction or degrees); e.g., nw or 315
      degrees. This measure provides an indication of sun and wind exposure that will
      influence soil temperature and evapotranspiration
    title: slope aspect
    keywords:
      - slope
    slot_uri: MIXS:0000647
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  slope_gradient:
    annotations:
      Preferred_unit: percentage
    description: Commonly called 'slope'. The angle between ground surface and a horizontal
      line (in percent). This is the direction that overland water would flow. This
      measure is usually taken with a hand level meter or clinometer
    title: slope gradient
    keywords:
      - slope
    slot_uri: MIXS:0000646
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  sludge_retent_time:
    annotations:
      Preferred_unit: hours
    description: The time activated sludge remains in reactor
    title: sludge retention time
    keywords:
      - time
    slot_uri: MIXS:0000669
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  smoker:
    description: Specification of smoking status
    title: smoker
    examples:
      - value: 'yes'
    slot_uri: MIXS:0000262
    range: boolean
  sodium:
    annotations:
      Preferred_unit: milligram per liter, parts per million
    description: Sodium concentration in the sample
    title: sodium
    examples:
      - value: 10.5 milligram per liter
    slot_uri: MIXS:0000428
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  soil_conductivity:
    annotations:
      Preferred_unit: milliSiemens per centimeter
    title: soil conductivity
    examples:
      - value: 10 milliSiemens per centimeter
    keywords:
      - soil
    slot_uri: MIXS:0001158
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  soil_cover:
    annotations:
      Expected_value: subclass of 'environmental material', http://purl.obolibrary.org/obo/ENVO_00010483
    description: Material covering the sampled soil. This field accepts terms under
      ENVO:00010483, environmental material
    title: soil cover
    examples:
      - value: bare soil [ENVO01001616]
    keywords:
      - soil
    string_serialization: bare soil [ENVO:01001616]
    slot_uri: MIXS:0001159
  soil_horizon:
    description: Specific layer in the land area which measures parallel to the soil
      surface and possesses physical characteristics which differ from the layers
      above and beneath
    title: soil horizon
    examples:
      - value: A horizon
    keywords:
      - horizon
      - soil
    slot_uri: MIXS:0001082
    range: SoilHorizonEnum
  soil_pH:
    title: soil pH
    examples:
      - value: '7.2'
    keywords:
      - ph
      - soil
    slot_uri: MIXS:0001160
    range: float
  soil_porosity:
    annotations:
      Expected_value: percent porosity
      Preferred_unit: percentage
    description: Porosity of soil or deposited sediment is volume of voids divided
      by the total volume of sample
    title: soil sediment porosity
    examples:
      - value: '0.2'
    keywords:
      - porosity
      - sediment
      - soil
    string_serialization: '{percentage}'
    slot_uri: MIXS:0001162
  soil_temp:
    annotations:
      Preferred_unit: degree Celsius
    description: Temperature of soil at the time of sampling
    title: soil temperature
    examples:
      - value: 25 degrees Celsius
    keywords:
      - soil
      - temperature
    slot_uri: MIXS:0001163
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  soil_texture:
    description: The relative proportion of different grain sizes of mineral particles
      in a soil, as described using a standard system; express as % sand (50 um to
      2 mm), silt (2 um to 50 um), and clay (<2 um) with textural name (e.g., silty
      clay loam) optional
    title: soil texture
    keywords:
      - soil
      - texture
    slot_uri: MIXS:0000335
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  soil_texture_class:
    description: One of the 12 soil texture classes use to describe soil texture based
      on the relative proportion of different grain sizes  of mineral particles [sand
      (50 um to 2 mm), silt (2 um to 50 um), and clay (<2 um)] in a soil
    title: soil texture classification
    examples:
      - value: silty clay loam
    keywords:
      - classification
      - soil
      - texture
    slot_uri: MIXS:0001164
    range: SoilTextureClassEnum
  soil_texture_meth:
    description: Reference or method used in determining soil texture
    title: soil texture method
    examples:
      - value: https://uwlab.soils.wisc.edu/wp-content/uploads/sites/17/2015/09/particle_size.pdf
    keywords:
      - method
      - soil
      - texture
    slot_uri: MIXS:0000336
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  soil_type:
    annotations:
      Expected_value: ENVO:00001998
    description: Description of the soil type or classification. This field accepts
      terms under soil (http://purl.obolibrary.org/obo/ENVO_00001998).  Multiple terms
      can be separated by pipes
    title: soil type
    examples:
      - value: plinthosol [ENVO:00002250]
    keywords:
      - soil
      - type
    slot_uri: MIXS:0000332
  soil_type_meth:
    description: Reference or method used in determining soil series name or other
      lower-level classification
    title: soil type method
    examples:
      - value: https://www.lrh.usace.army.mil/Portals/38/docs/PR/BluestoneSFEIS/Appendix%20K-Soil%20Descriptions.pdf
    keywords:
      - method
      - soil
      - type
    slot_uri: MIXS:0000334
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  solar_irradiance:
    annotations:
      Preferred_unit: kilowatts per square meter per day, ergs per square centimeter per
        second
    description: The amount of solar energy that arrives at a specific area of a surface
      during a specific time interval
    title: solar irradiance
    examples:
      - value: 1.36 kilowatts per square meter per day
    slot_uri: MIXS:0000112
    multivalued: true
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  soluble_inorg_mat:
    annotations:
      Expected_value: soluble inorganic material name;measurement value
      Preferred_unit: gram, microgram, mole per liter, gram per liter, parts per million
    description: Concentration of substances such as ammonia, road-salt, sea-salt,
      cyanide, hydrogen sulfide, thiocyanates, thiosulfates, etc
    title: soluble inorganic material
    keywords:
      - inorganic
      - material
      - soluble
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000672
    multivalued: true
  soluble_org_mat:
    annotations:
      Expected_value: soluble organic material name;measurement value
      Preferred_unit: gram, microgram, mole per liter, gram per liter, parts per million
    description: Concentration of substances such as urea, fruit sugars, soluble proteins,
      drugs, pharmaceuticals, etc
    title: soluble organic material
    keywords:
      - material
      - organic
      - soluble
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000673
    multivalued: true
  soluble_react_phosp:
    annotations:
      Preferred_unit: micromole per liter, milligram per liter, parts per million
    description: Concentration of soluble reactive phosphorus
    title: soluble reactive phosphorus
    examples:
      - value: 0.1 milligram per liter
    keywords:
      - phosphorus
      - soluble
    slot_uri: MIXS:0000738
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  sop:
    annotations:
      Expected_value: reference to SOP
    description: Standard operating procedures used in assembly and/or annotation
      of genomes, metagenomes or environmental sequences
    title: relevant standard operating procedures
    examples:
      - value: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/its/
    in_subset:
      - sequencing
    keywords:
      - procedures
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000090
    multivalued: true
  sort_tech:
    description: Method used to sort/isolate cells or particles of interest
    title: sorting technology
    examples:
      - value: optical manipulation
    in_subset:
      - sequencing
    slot_uri: MIXS:0000075
    range: SortTechEnum
  source_mat_id:
    annotations:
      Expected_value: 'for cultures of microorganisms: identifiers for two culture collections;
          for other material a unique arbitrary identifer'
    description: A unique identifier assigned to a material sample (as defined by
      http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular
      digital record of a material sample) used for extracting nucleic acids, and
      subsequent sequencing. The identifier can refer either to the original material
      collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher,
      /bio_material, or /culture_collection may or may not share the same value as
      the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id
      may both contain 'UAM:Herps:14' , referring to both the specimen voucher and
      sampled tissue with the same identifier. However, the /culture_collection qualifier
      may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id
      would refer to an identifier from some derived culture from which the nucleic
      acids were extracted (e.g. xatc123 or ark:/2154/R2)
    title: source material identifiers
    examples:
      - value: MPI012345
    in_subset:
      - nucleic acid sequence source
    keywords:
      - identifier
      - material
      - source
    range: string
    slot_uri: MIXS:0000026
    multivalued: true
  source_uvig:
    annotations:
      Expected_value: enumeration
    description: Type of dataset from which the UViG was obtained
    title: source of UViGs
    examples:
      - value: viral fraction metagenome (virome)
    in_subset:
      - nucleic acid sequence source
    keywords:
      - source
    string_serialization: '[metagenome (not viral targeted)|viral fraction metagenome
      (virome)|sequence-targeted metagenome|metatranscriptome (not viral targeted)|viral
      fraction RNA metagenome (RNA virome)|sequence-targeted RNA metagenome|microbial
      single amplified genome (SAG)|viral single amplified genome (vSAG)|isolate microbial
      genome|other]'
    slot_uri: MIXS:0000035
  space_typ_state:
    description: Customary or normal state of the space
    title: space typical state
    examples:
      - value: typically occupied
    slot_uri: MIXS:0000770
    range: SpaceTypStateEnum
    required: true
  spec_intended_cons:
    description: Food consumer type, human or animal, for which the food product is
      produced and marketed. This field accepts terms listed under food consumer group
      (http://purl.obolibrary.org/obo/FOODON_03510136)
    title: specific intended consumer
    examples:
      - value: senior as food consumer [FOODON:03510254]
    keywords:
      - consumer
    slot_uri: MIXS:0001234
    multivalued: true
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\]$
    structured_pattern:
      syntax: ^{termLabel} \[{termID}\]$
      interpolated: true
      partial_match: true
  special_diet:
    annotations:
      Expected_value: enumeration
    description: Specification of special diet; can include multiple special diets
    title: special diet
    examples:
      - value: other:vegan
    keywords:
      - diet
    string_serialization: '[low carb|reduced calorie|vegetarian|other(to be specified)]'
    slot_uri: MIXS:0000905
    multivalued: true
  specific:
    description: 'The building specifications. If design is chosen, indicate phase:
      conceptual, schematic, design development, construction documents'
    title: specifications
    examples:
      - value: construction
    slot_uri: MIXS:0000836
    range: SpecificEnum
  specific_host:
    annotations:
      Expected_value: host scientific name, taxonomy ID
    description: Report the host's taxonomic name and/or NCBI taxonomy ID
    title: host scientific name
    examples:
      - value: Homo sapiens and/or 9606
    in_subset:
      - nucleic acid sequence source
    keywords:
      - host
      - host.
    string_serialization: '{text}|{NCBI taxid}'
    slot_uri: MIXS:0000029
  specific_humidity:
    annotations:
      Preferred_unit: gram of air, kilogram of air
    description: The mass of water vapour in a unit mass of moist air, usually expressed
      as grams of vapour per kilogram of air, or, in air conditioning, as grains per
      pound
    title: specific humidity
    examples:
      - value: 15 per kilogram of air
    keywords:
      - humidity
    slot_uri: MIXS:0000214
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  spikein_AMR:
    annotations:
      Expected_value: measurement value ARO:3004299
    description: Qualitative description of a microbial response to antimicrobial
      agents. Bacteria may be susceptible or resistant to a broad range of antibiotic
      drugs or drug classes, with several intermediate states or phases. This field
      accepts terms under antimicrobial phenotype (http://purl.obolibrary.org/obo/ARO_3004299)
    title: antimicrobial phenotype of spike-in bacteria
    examples:
      - value: wild type [ARO:3004432]
    keywords:
      - antimicrobial
      - spike
    string_serialization: '{float} {unit};{termLabel} [{termID}]'
    slot_uri: MIXS:0001235
    multivalued: true
  spikein_antibiotic:
    annotations:
      Expected_value: drug name; concentration
    description: Antimicrobials used in research study to assess effects of exposure
      on microbiome of a specific site.  Please list antimicrobial, common name and/or
      class and concentration used for spike-in
    title: spike-in with antibiotics
    examples:
      - value: Tetracycline at 5 mg/ml
    keywords:
      - spike
    string_serialization: '{text} {integer}'
    slot_uri: MIXS:0001171
    multivalued: true
  spikein_count:
    annotations:
      Expected_value: organism name;measurement value;enumeration
      Preferred_unit: colony forming units per milliliter; colony forming units per gram
        of dry weight
    description: 'Total cell count of any organism (or group of organisms) per gram,
      volume or area of sample, should include name of organism followed by count.
      The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) should
      also be provided (example: total prokaryotes; 3.5e7 cells per ml; qPCR)'
    title: spike-in organism count
    examples:
      - value: total prokaryotes;3.5e7 colony forming units per milliliter;qPCR
    keywords:
      - count
      - organism
      - spike
    string_serialization: '{text};{float} {unit};[ATP|MPN|qPCR|other]'
    slot_uri: MIXS:0001335
  spikein_growth_med:
    description: A liquid or gel containing nutrients, salts, and other factors formulated
      to support the growth of microorganisms, cells, or plants (National Cancer Institute
      Thesaurus).  A growth medium is a culture medium which has the disposition to
      encourage growth of particular bacteria to the exclusion of others in the same
      growth environment.  In this case, list the culture medium used to propagate
      the spike-in bacteria during preparation of spike-in inoculum. This field accepts
      terms listed under microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067).
      If the proper descriptor is not listed please use text to describe the spike
      in growth media
    title: spike-in growth medium
    examples:
      - value: LB broth [MCO:0000036]
    keywords:
      - growth
      - spike
    slot_uri: MIXS:0001169
    multivalued: true
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+)|(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])$
    structured_pattern:
      syntax: ^{text}|({termLabel} \[{termID}\])$
      interpolated: true
      partial_match: true
  spikein_metal:
    annotations:
      Expected_value: heavy metal name or chemical symbol; concentration
    description: Heavy metals used in research study to assess effects of exposure
      on microbiome of a specific site.  Please list heavy metals and concentration
      used for spike-in
    title: spike-in with heavy metals
    examples:
      - value: Cd at 20 ppm
    keywords:
      - heavy
      - spike
    string_serialization: '{text} {integer}'
    slot_uri: MIXS:0001172
    multivalued: true
  spikein_org:
    description: Taxonomic information about the spike-in organism(s). This field
      accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This
      field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy.
      Multiple terms can be separated by pipes
    title: spike in organism
    examples:
      - value: Listeria monocytogenes [NCIT:C86502]|28901
    keywords:
      - organism
      - spike
    slot_uri: MIXS:0001167
    multivalued: true
    range: string
    pattern: ^(([^\s-]{1,2}|[^\s-]+.+[^\s-]+) \[[a-zA-Z]{2,}:[a-zA-Z0-9]\d+\])|[1-9][0-9]*$
    structured_pattern:
      syntax: ^({termLabel} \[{termID}\])|{integer}$
      interpolated: true
      partial_match: true
  spikein_serovar:
    annotations:
      Expected_value: NCIT:C14250 or antigenic formula or serovar name
    description: Taxonomic information about the spike-in organism(s) at the serovar
      or serotype level. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250).
      This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy.
      Multiple terms can be separated by pipes
    title: spike-in bacterial serovar or serotype
    examples:
      - value: Escherichia coli strain O157:H7 [NCIT:C86883]|83334
    keywords:
      - spike
    string_serialization: '{termLabel} [{termID}]|{integer}'
    slot_uri: MIXS:0001168
    multivalued: true
  spikein_strain:
    annotations:
      Expected_value: NCIT:C14250 or NCBI taxid or text
    description: Taxonomic information about the spike-in organism(s) at the strain
      level. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250).
      This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy.
      Multiple terms can be separated by pipes
    title: spike-in microbial strain
    examples:
      - value: '169963'
    keywords:
      - microbial
      - spike
    string_serialization: '{termLabel} [{termID}]|{integer}'
    slot_uri: MIXS:0001170
    multivalued: true
  sr_dep_env:
    description: Source rock depositional environment (https://en.wikipedia.org/wiki/Source_rock).
      If "other" is specified, please propose entry in "additional info" field
    title: source rock depositional environment
    examples:
      - value: Marine
    keywords:
      - environment
      - source
    slot_uri: MIXS:0000996
    range: SrDepEnvEnum
  sr_geol_age:
    description: 'Geological age of source rock (Additional info: https://en.wikipedia.org/wiki/Period_(geology)).
      If "other" is specified, please propose entry in "additional info" field'
    title: source rock geological age
    examples:
      - value: Silurian
    keywords:
      - age
      - source
    slot_uri: MIXS:0000997
    range: GeolAgeEnum
  sr_kerog_type:
    description: 'Origin of kerogen. Type I: Algal (aquatic), Type II: planktonic
      and soft plant material (aquatic or terrestrial), Type III: terrestrial woody/
      fibrous plant material (terrestrial), Type IV: oxidized recycled woody debris
      (terrestrial) (additional information: https://en.wikipedia.org/wiki/Kerogen).
      If "other" is specified, please propose entry in "additional info" field'
    title: source rock kerogen type
    examples:
      - value: Type IV
    keywords:
      - source
      - type
    slot_uri: MIXS:0000994
    range: SrKerogTypeEnum
  sr_lithology:
    description: Lithology of source rock (https://en.wikipedia.org/wiki/Source_rock).
      If "other" is specified, please propose entry in "additional info" field
    title: source rock lithology
    examples:
      - value: Coal
    keywords:
      - lithology
      - source
    slot_uri: MIXS:0000995
    range: SrLithologyEnum
  standing_water_regm:
    description: Treatment involving an exposure to standing water during a plant's
      life span, types can be flood water or standing water, treatment regimen including
      how many times the treatment was repeated, how long each treatment lasted, and
      the start and end time of the entire treatment; can include multiple regimens
    title: standing water regimen
    examples:
      - value: standing water;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M
    keywords:
      - regimen
      - water
    slot_uri: MIXS:0001069
    multivalued: true
    range: string
  ster_meth_samp_room:
    annotations:
      Expected_value: ENVO:01001026
    description: The method used to sterilize the sampling room. This field accepts
      terms listed under electromagnetic radiation (http://purl.obolibrary.org/obo/ENVO_01001026).
      If the proper descriptor is not listed, please use text to describe the sampling
      room sterilization method. Multiple terms can be separated by pipes
    title: sampling room sterilization method
    examples:
      - value: ultraviolet radiation [ENVO:21001216]|infrared radiation [ENVO:21001214]
    keywords:
      - method
      - room
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001259
    multivalued: true
  store_cond:
    annotations:
      Expected_value: storage condition type;duration
    description: Explain how and for how long the soil sample was stored before DNA
      extraction (fresh/frozen/other)
    title: storage conditions
    examples:
      - value: -20 degree Celsius freezer;P2Y10D
    keywords:
      - condition
      - storage
    string_serialization: '{text};{period}'
    slot_uri: MIXS:0000327
  study_complt_stat:
    annotations:
      Expected_value: YES or NO due to (1)adverse event (2) non-compliance (3) lost to follow
        up (4)other-specify
    description: Specification of study completion status, if no the reason should
      be specified
    title: study completion status
    examples:
      - value: no;non-compliance
    keywords:
      - status
    string_serialization: '{boolean};[adverse event|non-compliance|lost to follow
      up|other-specify]'
    slot_uri: MIXS:0000898
  study_design:
    annotations:
      Expected_value: OBI:0500000
    description: A plan specification comprised of protocols (which may specify how
      and what kinds of data will be gathered) that are executed as part of an investigation
      and is realized during a study design execution. This field accepts terms under
      study design (http://purl.obolibrary.org/obo/OBI_0500000). If the proper descriptor
      is not listed please use text to describe the study design. Multiple terms can
      be separated by pipes
    title: study design
    examples:
      - value: in vitro design [OBI:0001285]
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001236
    multivalued: true
  study_inc_dur:
    annotations:
      Preferred_unit: hours or days
    description: Sample incubation duration if unpublished or unvalidated method is
      used. Indicate the timepoint written in ISO 8601 format
    title: study incubation duration
    examples:
      - value: PT24H
    keywords:
      - duration
      - incubation
      - period
    slot_uri: MIXS:0001237
    range: string
    pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$
    structured_pattern:
      syntax: ^{duration}$
      interpolated: true
      partial_match: true
  study_inc_temp:
    annotations:
      Preferred_unit: degree Celsius
    description: Sample incubation temperature if unpublished or unvalidated method
      is used
    title: study incubation temperature
    examples:
      - value: 37 degree Celsius
    keywords:
      - incubation
      - temperature
    slot_uri: MIXS:0001238
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  study_timecourse:
    annotations:
      Preferred_unit: dpi
    description: For time-course research studies involving samples of the food commodity,
      indicate the total duration of the time-course study
    title: time-course duration
    examples:
      - value: 2 days post inoculation
    keywords:
      - duration
      - period
      - time
    slot_uri: MIXS:0001239
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  study_tmnt:
    annotations:
      Expected_value: MCO:0000866
    description: A process in which the act is intended to modify or alter some other
      material entity.  From the study design, each treatment is comprised of one
      level of one or multiple factors. This field accepts terms listed under treatment
      (http://purl.obolibrary.org/obo/MCO_0000866). If the proper descriptor is not
      listed please use text to describe the study treatment. Multiple terms can be
      separated by one or more pipes
    title: study treatment
    examples:
      - value: Factor A|spike-in|levels high, medium, low
    keywords:
      - treatment
    string_serialization: '{text}|{termLabel} [{termID}]'
    slot_uri: MIXS:0001240
    multivalued: true
  subspecf_gen_lin:
    annotations:
      Expected_value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies,
        e.g. serovar, biotype, ecotype, variety, cultivar
    description: Information about the genetic distinctness of the sequenced organism
      below the subspecies level, e.g., serovar, serotype, biotype, ecotype, or any
      relevant genetic typing schemes like Group I plasmid. Subspecies should not
      be recorded in this term, but in the NCBI taxonomy. Supply both the lineage
      name and the lineage rank separated by a colon, e.g., biovar:abc123
    title: subspecific genetic lineage
    examples:
      - value: serovar:Newport
    in_subset:
      - nucleic acid sequence source
    keywords:
      - lineage
    string_serialization: '{rank name}:{text}'
    slot_uri: MIXS:0000020
  substructure_type:
    description: The substructure or under building is that largely hidden section
      of the building which is built off the foundations to the ground floor level
    title: substructure type
    examples:
      - value: basement
    keywords:
      - type
    slot_uri: MIXS:0000767
    multivalued: true
    range: SubstructureTypeEnum
  sulfate:
    annotations:
      Preferred_unit: micromole per liter, milligram per liter, parts per million
    description: Concentration of sulfate in the sample
    title: sulfate
    examples:
      - value: 5 micromole per liter
    keywords:
      - sulfate
    slot_uri: MIXS:0000423
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  sulfate_fw:
    annotations:
      Preferred_unit: milligram per liter
    description: Original sulfate concentration in the hydrocarbon resource
    title: sulfate in formation water
    keywords:
      - sulfate
      - water
    slot_uri: MIXS:0000407
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  sulfide:
    annotations:
      Preferred_unit: micromole per liter, milligram per liter, parts per million
    description: Concentration of sulfide in the sample
    title: sulfide
    examples:
      - value: 2 micromole per liter
    keywords:
      - sulfide
    slot_uri: MIXS:0000424
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  surf_air_cont:
    description: Contaminant identified on surface
    title: surface-air contaminant
    examples:
      - value: radon
    slot_uri: MIXS:0000759
    multivalued: true
    range: SurfAirContEnum
    recommended: true
  surf_humidity:
    annotations:
      Preferred_unit: percentage
    description: 'Surfaces: water activity as a function of air and material moisture'
    title: surface humidity
    comments:
      - percent or float?
    examples:
      - value: '0.1'
    keywords:
      - humidity
      - surface
    slot_uri: MIXS:0000123
    range: float
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  surf_material:
    description: Surface materials at the point of sampling
    title: surface material
    examples:
      - value: wood
    keywords:
      - material
      - surface
    slot_uri: MIXS:0000758
    range: SurfMaterialEnum
  surf_moisture:
    annotations:
      Preferred_unit: parts per million, gram per cubic meter, gram per square meter
    description: Water held on a surface
    title: surface moisture
    examples:
      - value: 0.01 gram per square meter
    keywords:
      - moisture
      - surface
    slot_uri: MIXS:0000128
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  surf_moisture_ph:
    description: ph measurement of surface
    title: surface moisture pH
    examples:
      - value: '7'
    keywords:
      - moisture
      - ph
      - surface
    slot_uri: MIXS:0000760
    range: float
    recommended: true
  surf_temp:
    annotations:
      Preferred_unit: degree Celsius
    description: Temperature of the surface at the time of sampling
    title: surface temperature
    examples:
      - value: 15 degree Celsius
    keywords:
      - surface
      - temperature
    slot_uri: MIXS:0000125
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  suspend_part_matter:
    annotations:
      Preferred_unit: milligram per liter
    description: Concentration of suspended particulate matter
    title: suspended particulate matter
    examples:
      - value: 0.5 milligram per liter
    keywords:
      - particle
      - particulate
      - suspended
    slot_uri: MIXS:0000741
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  suspend_solids:
    annotations:
      Expected_value: suspended solid name;measurement value
      Preferred_unit: gram, microgram, milligram per liter, mole per liter, gram per liter,
        part per million
    description: Concentration of substances including a wide variety of material,
      such as silt, decaying plant and animal matter; can include multiple substances
    title: suspended solids
    keywords:
      - solids
      - suspended
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000150
    multivalued: true
  sym_life_cycle_type:
    annotations:
      Expected_value: type of life cycle of the symbiotic organism (host of the samples)
    description: Type of life cycle of the symbiotic host species (the thing being
      sampled). Simple life cycles occur within a single host, complex ones within
      multiple different hosts over the course of their normal life cycle
    title: symbiotic host organism life cycle type
    examples:
      - value: complex life cycle
    keywords:
      - host
      - host.
      - life
      - organism
      - symbiosis
      - type
    slot_uri: MIXS:0001300
    range: SymLifeCycleTypeEnum
    required: true
  symbiont_host_role:
    description: Role of the host in the life cycle of the symbiotic organism
    title: host of the symbiont role
    examples:
      - value: intermediate
    keywords:
      - host
      - host.
      - symbiosis
    slot_uri: MIXS:0001303
    range: SymbiontHostRoleEnum
    recommended: true
  tan:
    annotations:
      Preferred_unit: milligram per liter
    description: 'Total Acid Number  (TAN) is a measurement of acidity that is determined
      by the amount of  potassium hydroxide  in milligrams that is needed to neutralize
      the acids in one gram of oil.  It is an important quality measurement of  crude
      oil. (source: https://en.wikipedia.org/wiki/Total_acid_number)'
    title: total acid number
    keywords:
      - number
      - total
    slot_uri: MIXS:0000120
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  target_gene:
    description: Targeted gene or locus name for marker gene studies
    title: target gene
    examples:
      - value: 16S rRNA, 18S rRNA, nif, amoA, rpo
    in_subset:
      - sequencing
    keywords:
      - target
    slot_uri: MIXS:0000044
    range: string
  target_subfragment:
    description: Name of subfragment of a gene or locus. Important to e.g. identify
      special regions on marker genes like V6 on 16S rRNA
    title: target subfragment
    examples:
      - value: V6, V9, ITS
    in_subset:
      - sequencing
    keywords:
      - target
    slot_uri: MIXS:0000045
    range: string
  tax_class:
    description: Method used for taxonomic classification, along with reference database
      used, classification rank, and thresholds used to classify new genomes
    title: taxonomic classification
    examples:
      - value: vConTACT vContact2 (references from NCBI RefSeq v83, genus rank classification,
          default parameters)
    in_subset:
      - sequencing
    keywords:
      - classification
      - taxon
    slot_uri: MIXS:0000064
    range: string
  tax_ident:
    description: The phylogenetic marker(s) used to assign an organism name to the
      SAG or MAG
    title: taxonomic identity marker
    examples:
      - value: other
        description: was other <colon> rpoB gene
    in_subset:
      - sequencing
    keywords:
      - identifier
      - marker
      - taxon
    slot_uri: MIXS:0000053
    range: TaxIdentEnum
  temp:
    annotations:
      Preferred_unit: degree Celsius
    description: Temperature of the sample at the time of sampling
    title: temperature
    examples:
      - value: 25 degree Celsius
    in_subset:
      - environment
    keywords:
      - temperature
    slot_uri: MIXS:0000113
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  temp_out:
    annotations:
      Preferred_unit: degree Celsius
    description: The recorded temperature value at sampling time outside
    title: temperature outside house
    examples:
      - value: 5 degree Celsius
    keywords:
      - house
      - temperature
    slot_uri: MIXS:0000197
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tertiary_treatment:
    annotations:
      Expected_value: tertiary treatment type
    description: The process providing a final treatment stage to raise the effluent
      quality before it is discharged to the receiving environment
    title: tertiary treatment
    keywords:
      - treatment
    range: string
    slot_uri: MIXS:0000352
  tidal_stage:
    description: Stage of tide
    title: tidal stage
    examples:
      - value: high tide
    slot_uri: MIXS:0000750
    range: TidalStageEnum
  tillage:
    description: Note method(s) used for tilling
    title: history/tillage
    examples:
      - value: chisel
    keywords:
      - history
    slot_uri: MIXS:0001081
    multivalued: true
    range: TillageEnum
  time_last_toothbrush:
    description: Specification of the time since last toothbrushing
    title: time since last toothbrushing
    comments:
      - P2H45M does not match ^P(?!$)(\\d+Y)?(\\d+M)?(\\d+W)?(\\d+D)?(T(?=\\d+[HMS])(\\d+H)?(\\d+M)?(\\d+S)?)?$
      - problematic ISO 8601 period validation
    examples:
      - value: PT2H45M
    keywords:
      - time
    slot_uri: MIXS:0000924
    range: string
    pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$
    structured_pattern:
      syntax: ^{duration}$
      interpolated: true
      partial_match: true
  time_since_last_wash:
    description: Specification of the time since last wash
    title: time since last wash
    examples:
      - value: P1D
    keywords:
      - time
    slot_uri: MIXS:0000943
    range: string
    pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$
    structured_pattern:
      syntax: ^{duration}$
      interpolated: true
      partial_match: true
  timepoint:
    annotations:
      Preferred_unit: hours or days
    description: Time point at which a sample or observation is made or taken from
      a biomaterial as measured from some reference point. Indicate the timepoint
      written in ISO 8601 format
    title: timepoint
    examples:
      - value: PT24H
    keywords:
      - time
    slot_uri: MIXS:0001173
    range: string
    pattern: ^P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)$
    structured_pattern:
      syntax: ^{duration}$
      interpolated: true
      partial_match: true
  tiss_cult_growth_med:
    description: Description of plant tissue culture growth media used
    title: tissue culture growth media
    examples:
      - value: https://link.springer.com/content/pdf/10.1007/BF02796489.pdf
    keywords:
      - culture
      - growth
    slot_uri: MIXS:0001070
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$|([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}|{text}$
      interpolated: true
      partial_match: true
  toluene:
    annotations:
      Preferred_unit: milligram per liter, parts per million
    description: Concentration of toluene in the sample
    title: toluene
    slot_uri: MIXS:0000154
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tot_carb:
    description: Total carbon content
    title: total carbon
    keywords:
      - carbon
      - total
    slot_uri: MIXS:0000525
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tot_depth_water_col:
    annotations:
      Preferred_unit: meter
    description: Measurement of total depth of water column
    title: total depth of water column
    examples:
      - value: 500 meter
    keywords:
      - depth
      - total
      - water
    slot_uri: MIXS:0000634
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tot_diss_nitro:
    annotations:
      Preferred_unit: microgram per liter
    description: 'Total dissolved nitrogen concentration, reported as nitrogen, measured
      by: total dissolved nitrogen = NH4 + NO3NO2 + dissolved organic nitrogen'
    title: total dissolved nitrogen
    examples:
      - value: 40 microgram per liter
    keywords:
      - dissolved
      - nitrogen
      - total
    slot_uri: MIXS:0000744
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tot_inorg_nitro:
    annotations:
      Preferred_unit: microgram per liter
    description: Total inorganic nitrogen content
    title: total inorganic nitrogen
    examples:
      - value: 40 microgram per liter
    keywords:
      - inorganic
      - nitrogen
      - total
    slot_uri: MIXS:0000745
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tot_iron:
    annotations:
      Preferred_unit: milligram per liter, milligram per kilogram
    description: Concentration of total iron in the sample
    title: total iron
    keywords:
      - total
    slot_uri: MIXS:0000105
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tot_nitro:
    annotations:
      Preferred_unit: microgram per liter, micromole per liter, milligram per liter
    description: 'Total nitrogen concentration of water samples, calculated by: total
      nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured
      without filtering, reported as nitrogen'
    title: total nitrogen concentration
    examples:
      - value: 50 micromole per liter
    keywords:
      - concentration
      - nitrogen
      - total
    slot_uri: MIXS:0000102
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tot_nitro_cont_meth:
    description: Reference or method used in determining the total nitrogen
    title: total nitrogen content method
    examples:
      - value: https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/0471142913.fab0102s00
    keywords:
      - content
      - method
      - nitrogen
      - total
    slot_uri: MIXS:0000338
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  tot_nitro_content:
    description: Total nitrogen content of the sample
    title: total nitrogen content
    examples:
      - value: 35 milligrams Nitrogen per kilogram of soil
    keywords:
      - content
      - nitrogen
      - total
    slot_uri: MIXS:0000530
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tot_org_c_meth:
    description: Reference or method used in determining total organic carbon
    title: total organic carbon method
    examples:
      - value: https://www.epa.gov/sites/production/files/2015-12/documents/9060a.pdf
    keywords:
      - carbon
      - method
      - organic
      - total
    slot_uri: MIXS:0000337
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  tot_org_carb:
    annotations:
      Preferred_unit: gram Carbon per kilogram sample material
    description: Total organic carbon content
    title: total organic carbon
    examples:
      - value: '0.02'
    keywords:
      - carbon
      - organic
      - total
    slot_uri: MIXS:0000533
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tot_part_carb:
    annotations:
      Preferred_unit: microgram per liter, micromole per liter
    description: Total particulate carbon content
    title: total particulate carbon
    examples:
      - value: 35 micromole per liter
    keywords:
      - carbon
      - particle
      - particulate
      - total
    slot_uri: MIXS:0000747
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tot_phosp:
    annotations:
      Preferred_unit: micromole per liter, milligram per liter, parts per million
    description: 'Total phosphorus concentration in the sample, calculated by: total
      phosphorus = total dissolved phosphorus + particulate phosphorus'
    title: total phosphorus
    examples:
      - value: 0.03 milligram per liter
    keywords:
      - phosphorus
      - total
    slot_uri: MIXS:0000117
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tot_phosphate:
    annotations:
      Preferred_unit: microgram per liter, micromole per liter
    description: Total amount or concentration of phosphate
    title: total phosphate
    keywords:
      - phosphate
      - total
    slot_uri: MIXS:0000689
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tot_sulfur:
    annotations:
      Preferred_unit: milligram per liter, parts per million
    description: Concentration of total sulfur in the sample
    title: total sulfur
    keywords:
      - sulfur
      - total
    slot_uri: MIXS:0000419
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  train_line:
    description: The subway line name
    title: train line
    examples:
      - value: red
    keywords:
      - train
    slot_uri: MIXS:0000837
    range: TrainLineEnum
  train_stat_loc:
    description: The train station collection location
    title: train station collection location
    examples:
      - value: forest hills
    keywords:
      - location
      - train
    slot_uri: MIXS:0000838
    range: TrainStatLocEnum
  train_stop_loc:
    description: The train stop collection location
    title: train stop collection location
    examples:
      - value: end
    keywords:
      - location
      - stop
      - train
    slot_uri: MIXS:0000839
    range: TrainStopLocEnum
  travel_out_six_month:
    annotations:
      Expected_value: country name
    description: Specification of the countries travelled in the last six months;
      can include multiple travels
    title: travel outside the country in last six months
    keywords:
      - months
    range: string
    slot_uri: MIXS:0000268
    multivalued: true
  trna_ext_software:
    description: Tools used for tRNA identification
    title: tRNA extraction software
    examples:
      - value: infernal;v2;default parameters
    in_subset:
      - sequencing
    keywords:
      - software
    slot_uri: MIXS:0000068
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{software};{version};{parameters}$
      interpolated: true
      partial_match: true
  trnas:
    annotations:
      Expected_value: value from 0-21
    description: The total number of tRNAs identified from the SAG or MAG
    title: number of standard tRNAs extracted
    examples:
      - value: '18'
    in_subset:
      - sequencing
    keywords:
      - number
    string_serialization: '{integer}'
    slot_uri: MIXS:0000067
  trophic_level:
    description: Trophic levels are the feeding position in a food chain. Microbes
      can be a range of producers (e.g. chemolithotroph)
    title: trophic level
    examples:
      - value: heterotroph
    in_subset:
      - nucleic acid sequence source
    keywords:
      - level
    slot_uri: MIXS:0000032
    range: TrophicLevelEnum
  turbidity:
    description: Measure of the amount of cloudiness or haziness in water caused by
      individual particles
    title: turbidity
    examples:
      - value: 0.3 nephelometric turbidity units
    slot_uri: MIXS:0000191
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tvdss_of_hcr_press:
    annotations:
      Preferred_unit: meter
    description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where
      the original pressure was measured (e.g. 1578 m)
    title: depth (TVDSS) of hydrocarbon resource pressure
    keywords:
      - depth
      - hydrocarbon
      - pressure
      - resource
    slot_uri: MIXS:0000397
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  tvdss_of_hcr_temp:
    annotations:
      Preferred_unit: meter
    description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where
      the original temperature was measured (e.g. 1345 m)
    title: depth (TVDSS) of hydrocarbon resource temperature
    keywords:
      - depth
      - hydrocarbon
      - resource
      - temperature
    slot_uri: MIXS:0000394
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  twin_sibling:
    description: Specification of twin sibling presence
    title: twin sibling presence
    examples:
      - value: 'yes'
    keywords:
      - presence
    slot_uri: MIXS:0000326
    range: boolean
  typ_occup_density:
    description: Customary or normal density of occupants
    title: typical occupant density
    examples:
      - value: '25'
    keywords:
      - density
    slot_uri: MIXS:0000771
    range: float
    required: true
  type_of_symbiosis:
    description: Type of biological interaction established between the symbiotic
      host organism being sampled and its respective host
    title: type of symbiosis
    examples:
      - value: parasitic
    keywords:
      - symbiosis
      - type
    slot_uri: MIXS:0001307
    range: TypeOfSymbiosisEnum
    recommended: true
  urine_collect_meth:
    description: Specification of urine collection method
    title: urine/collection method
    examples:
      - value: catheter
    keywords:
      - method
    slot_uri: MIXS:0000899
    range: UrineCollectMethEnum
  urobiom_sex:
    annotations:
      Expected_value: sex of the symbiotic organism (host of the samples); enumeration
    description: Physical sex of the host
    title: host sex
    keywords:
      - host
      - host.
    slot_uri: MIXS:0000862
    range: UrobiomSexEnum
  urogenit_disord:
    description: History of urogenital disorders, can include multiple disorders.
      The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org,
      reproductive system disease (https://disease-ontology.org/?id=DOID:15) or urinary
      system disease (https://disease-ontology.org/?id=DOID:18)
    title: urogenital disorder
    keywords:
      - disorder
    slot_uri: MIXS:0000289
    multivalued: true
    range: string
  urogenit_tract_disor:
    description: History of urogenital tract disorders; can include multiple disorders.
      The terms should be chosen from the DO (Human Disease Ontology) at http://www.disease-ontology.org,
      urinary system disease (https://disease-ontology.org/?id=DOID:18)
    title: urine/urogenital tract disorder
    keywords:
      - disorder
    slot_uri: MIXS:0000278
    multivalued: true
    range: string
  ventilation_rate:
    annotations:
      Preferred_unit: cubic meter per minute, liters per second
    description: Ventilation rate of the system in the sampled premises
    title: ventilation rate
    examples:
      - value: 750 cubic meter per minute
    keywords:
      - rate
    slot_uri: MIXS:0000114
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  ventilation_type:
    annotations:
      Expected_value: ventilation type name
    description: Ventilation system used in the sampled premises
    title: ventilation type
    examples:
      - value: Operable windows
    keywords:
      - type
    range: string
    slot_uri: MIXS:0000756
    multivalued: true
  vfa:
    annotations:
      Preferred_unit: milligram per liter, parts per million
    description: Concentration of Volatile Fatty Acids in the sample
    title: volatile fatty acids
    slot_uri: MIXS:0000152
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  vfa_fw:
    annotations:
      Preferred_unit: milligram per liter
    description: Original volatile fatty acid concentration in the hydrocarbon resource
    title: vfa in formation water
    keywords:
      - water
    slot_uri: MIXS:0000408
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  vir_ident_software:
    annotations:
      Expected_value: software name, version and relevant parameters
    description: Tool(s) used for the identification of UViG as a viral genome, software
      or protocol name including version number, parameters, and cutoffs used
    title: viral identification software
    examples:
      - value: VirSorter; 1.0.4; Virome database, category 2
    in_subset:
      - sequencing
    keywords:
      - identifier
      - software
    string_serialization: '{software};{version};{parameters}'
    slot_uri: MIXS:0000081
  virus_enrich_appr:
    description: List of approaches used to enrich the sample for viruses, if any
    title: virus enrichment approach
    examples:
      - value: filtration
        description: was filtration + FeCl Precipitation + ultracentrifugation + DNAse
      - value: FeCl Precipitation
        description: was filtration + FeCl Precipitation + ultracentrifugation + DNAse
      - value: ultracentrifugation
        description: was filtration + FeCl Precipitation + ultracentrifugation + DNAse
      - value: DNAse
        description: was filtration + FeCl Precipitation + ultracentrifugation + DNAse
    in_subset:
      - nucleic acid sequence source
    keywords:
      - enrichment
    slot_uri: MIXS:0000036
    range: VirusEnrichApprEnum
  vis_media:
    annotations:
      Expected_value: enumeration
    description: The building visual media
    title: visual media
    examples:
      - value: 3D scans
    string_serialization: '[photos|videos|commonly of the building|site context (adjacent
      buildings, vegetation, terrain, streets)|interiors|equipment|3D scans]'
    slot_uri: MIXS:0000840
  viscosity:
    annotations:
      Expected_value: measurement value;measurement value
      Preferred_unit: cP at degree Celsius
    description: A measure of oil's resistance  to gradual deformation by  shear stress  or  tensile
      stress (e.g. 3.5 cp; 100   C)
    title: viscosity
    string_serialization: '{float} {unit};{float} {unit}'
    slot_uri: MIXS:0000126
  volatile_org_comp:
    annotations:
      Expected_value: volatile organic compound name;measurement value
      Preferred_unit: microgram per cubic meter, parts per million, nanogram per liter
    description: Concentration of carbon-based chemicals that easily evaporate at
      room temperature; can report multiple volatile organic compounds by entering
      numeric values preceded by name of compound
    title: volatile organic compounds
    examples:
      - value: formaldehyde;500 nanogram per liter
    keywords:
      - organic
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000115
    multivalued: true
  wall_area:
    annotations:
      Preferred_unit: square meter
    description: The total area of the sampled room's walls
    title: wall area
    keywords:
      - area
      - wall
    slot_uri: MIXS:0000198
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  wall_const_type:
    description: The building class of the wall defined by the composition of the
      building elements and fire-resistance rating
    title: wall construction type
    examples:
      - value: fire resistive
    keywords:
      - type
      - wall
    slot_uri: MIXS:0000841
    range: WallConstTypeEnum
  wall_finish_mat:
    description: The material utilized to finish the outer most layer of the wall
    title: wall finish material
    examples:
      - value: wood
    keywords:
      - material
      - wall
    slot_uri: MIXS:0000842
    range: WallFinishMatEnum
  wall_height:
    annotations:
      Preferred_unit: centimeter
    description: The average height of the walls in the sampled room
    title: wall height
    keywords:
      - height
      - wall
    slot_uri: MIXS:0000221
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  wall_loc:
    description: The relative location of the wall within the room
    title: wall location
    examples:
      - value: north
    keywords:
      - location
      - wall
    slot_uri: MIXS:0000843
    range: CompassDirections8Enum
  wall_surf_treatment:
    description: The surface treatment of interior wall
    title: wall surface treatment
    examples:
      - value: paneling
    keywords:
      - surface
      - treatment
      - wall
    slot_uri: MIXS:0000845
    range: WallSurfTreatmentEnum
  wall_texture:
    description: The feel, appearance, or consistency of a wall surface
    title: wall texture
    examples:
      - value: popcorn
    keywords:
      - texture
      - wall
    slot_uri: MIXS:0000846
    range: CeilingWallTextureEnum
  wall_thermal_mass:
    annotations:
      Preferred_unit: joule per degree Celsius
    description: The ability of the wall to provide inertia against temperature fluctuations.
      Generally this means concrete or concrete block that is either exposed or covered
      only with paint
    title: wall thermal mass
    keywords:
      - mass
      - wall
    slot_uri: MIXS:0000222
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  wall_water_mold:
    description: Signs of the presence of mold or mildew on a wall
    title: wall signs of water/mold
    examples:
      - value: no presence of mold visible
    keywords:
      - wall
    slot_uri: MIXS:0000844
    range: MoldVisibilityEnum
  wastewater_type:
    annotations:
      Expected_value: wastewater type name
    description: The origin of wastewater such as human waste, rainfall, storm drains,
      etc
    title: wastewater type
    keywords:
      - type
    range: string
    slot_uri: MIXS:0000353
  water_cont_soil_meth:
    description: Reference or method used in determining the water content of soil
    title: water content method
    keywords:
      - content
      - method
      - water
    slot_uri: MIXS:0000323
    range: string
    pattern: ^^PMID:\d+$|^doi:10.\d{2,9}/.*$|^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$$
    structured_pattern:
      syntax: ^{PMID}|{DOI}|{URL}$
      interpolated: true
      partial_match: true
  water_content:
    annotations:
      Preferred_unit: gram per gram or cubic centimeter per cubic centimeter
    description: Water content measurement
    title: water content
    keywords:
      - content
      - water
    slot_uri: MIXS:0000185
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  water_current:
    annotations:
      Preferred_unit: cubic meter per second, knots
    description: Measurement of magnitude and direction of flow within a fluid
    title: water current
    examples:
      - value: 10 cubic meter per second
    keywords:
      - water
    slot_uri: MIXS:0000203
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  water_cut:
    annotations:
      Preferred_unit: percent
    description: Current amount of water (%) in a produced fluid stream; or the average
      of the combined streams
    title: water cut
    comments:
      - percent or float?
    examples:
      - value: 45%
    keywords:
      - water
    slot_uri: MIXS:0000454
    range: string
    required: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  water_feat_size:
    annotations:
      Preferred_unit: square meter
    description: The size of the water feature
    title: water feature size
    keywords:
      - feature
      - size
      - water
    slot_uri: MIXS:0000223
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  water_feat_type:
    description: The type of water feature present within the building being sampled
    title: water feature type
    examples:
      - value: stream
    keywords:
      - feature
      - type
      - water
    slot_uri: MIXS:0000847
    range: WaterFeatTypeEnum
  water_frequency:
    annotations:
      Expected_value: rate
      Preferred_unit: per day, per week, per month
    description: Number of water delivery events within a given period of time
    title: water delivery frequency
    examples:
      - value: 2 per day
    keywords:
      - delivery
      - frequency
      - water
    string_serialization: '{float}{unit}'
    slot_uri: MIXS:0001174
  water_pH:
    title: water pH
    examples:
      - value: '7.2'
    keywords:
      - ph
      - water
    slot_uri: MIXS:0001175
    range: float
  water_prod_rate:
    annotations:
      Preferred_unit: cubic meter per day
    description: Water production rates per well (e.g. 987 m3 / day)
    title: water production rate
    keywords:
      - production
      - rate
      - water
    slot_uri: MIXS:0000453
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  water_source_adjac:
    annotations:
      Expected_value: ENVO_01001110 or ENVO_00000070
    description: Description of the environmental features that are adjacent to the
      farm water source. This field accepts terms under ecosystem (http://purl.obolibrary.org/obo/ENVO_01001110)
      and human construction (http://purl.obolibrary.org/obo/ENVO_00000070). Multiple
      terms can be separated by pipes
    title: environmental feature adjacent water source
    examples:
      - value: feedlot [ENVO:01000627]
    keywords:
      - adjacent
      - environmental
      - feature
      - source
      - water
    range: string
    slot_uri: MIXS:0001122
    multivalued: true
  water_source_shared:
    annotations:
      Expected_value: enumeration
    description: Other users sharing access to the same water source. Multiple terms
      can be separated by one or more pipes
    title: water source shared
    examples:
      - value: no sharing
    keywords:
      - source
      - water
    string_serialization: '[multiple users, agricutural|multiple users, other|no sharing]'
    slot_uri: MIXS:0001176
    multivalued: true
  water_temp_regm:
    annotations:
      Preferred_unit: degree Celsius
    description: Information about treatment involving an exposure to water with varying
      degree of temperature, treatment regimen including how many times the treatment
      was repeated, how long each treatment lasted, and the start and end time of
      the entire treatment; can include multiple regimens
    title: water temperature regimen
    examples:
      - value: 15 degree Celsius;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M
    keywords:
      - regimen
      - temperature
      - water
    slot_uri: MIXS:0000590
    multivalued: true
    range: string
  watering_regm:
    annotations:
      Preferred_unit: milliliter, liter
    description: Information about treatment involving an exposure to watering frequencies,
      treatment regimen including how many times the treatment was repeated, how long
      each treatment lasted, and the start and end time of the entire treatment; can
      include multiple regimens
    title: watering regimen
    examples:
      - value: 1 liter;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M
    keywords:
      - regimen
      - water
    slot_uri: MIXS:0000591
    multivalued: true
    range: string
  weekday:
    description: The day of the week when sampling occurred
    title: weekday
    examples:
      - value: Sunday
    slot_uri: MIXS:0000848
    range: WeekdayEnum
  weight_loss_3_month:
    annotations:
      Expected_value: weight loss specification;measurement value
      Preferred_unit: kilogram, gram
    description: Specification of weight loss in the last three months, if yes should
      be further specified to include amount of weight loss
    title: weight loss in last three months
    examples:
      - value: yes;5 kilogram
    keywords:
      - months
      - weight
    string_serialization: '{boolean};{float} {unit}'
    slot_uri: MIXS:0000295
  wga_amp_appr:
    description: Method used to amplify genomic DNA in preparation for sequencing
    title: WGA amplification approach
    examples:
      - value: mda based
    in_subset:
      - sequencing
    slot_uri: MIXS:0000055
    range: WgaAmpApprEnum
  wga_amp_kit:
    annotations:
      Expected_value: kit name
    description: Kit used to amplify genomic DNA in preparation for sequencing
    title: WGA amplification kit
    examples:
      - value: qiagen repli-g
    in_subset:
      - sequencing
    keywords:
      - kit
    range: string
    slot_uri: MIXS:0000006
  win:
    description: 'A unique identifier of a well or wellbore. This is part of the Global
      Framework for Well Identification initiative which is compiled by the Professional
      Petroleum Data Management Association (PPDM) in an effort to improve well identification
      systems. (Supporting information: https://ppdm.org/ and http://dl.ppdm.org/dl/690)'
    title: well identification number
    keywords:
      - identifier
      - number
    slot_uri: MIXS:0000297
    range: string
    recommended: true
  wind_direction:
    annotations:
      Preferred_unit: degrees or cardinal direction
    description: Wind direction is the direction from which a wind originates
    title: wind direction
    keywords:
      - direction
      - wind
    slot_uri: MIXS:0000757
    range: string
  wind_speed:
    description: speed of wind measured at the time of sampling
    title: wind speed
    keywords:
      - speed
      - wind
    slot_uri: MIXS:0000118
    range: string
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
  window_cond:
    description: The physical condition of the window at the time of sampling
    title: window condition
    examples:
      - value: rupture
    keywords:
      - condition
      - window
    slot_uri: MIXS:0000849
    range: DamagedRupturedEnum
  window_cover:
    description: The type of window covering
    title: window covering
    examples:
      - value: curtains
    keywords:
      - window
    slot_uri: MIXS:0000850
    range: WindowCoverEnum
  window_horiz_pos:
    description: The horizontal position of the window on the wall
    title: window horizontal position
    examples:
      - value: middle
    keywords:
      - window
    slot_uri: MIXS:0000851
    range: WindowHorizPosEnum
  window_loc:
    description: The relative location of the window within the room
    title: window location
    examples:
      - value: west
    keywords:
      - location
      - window
    slot_uri: MIXS:0000852
    range: CompassDirections8Enum
  window_mat:
    description: The type of material used to finish a window
    title: window material
    examples:
      - value: wood
    keywords:
      - material
      - window
    slot_uri: MIXS:0000853
    range: WindowMatEnum
  window_open_freq:
    description: The number of times windows are opened per week
    title: window open frequency
    keywords:
      - frequency
      - window
    slot_uri: MIXS:0000246
    range: integer
  window_size:
    annotations:
      Expected_value: measurement value
      Preferred_unit: inch, meter
    description: The window's length and width
    title: window area/size
    keywords:
      - window
    string_serialization: '{float} {unit} x {float} {unit}'
    slot_uri: MIXS:0000224
  window_status:
    description: Defines whether the windows were open or closed during environmental
      testing
    title: window status
    examples:
      - value: open
    keywords:
      - status
      - window
    slot_uri: MIXS:0000855
    range: WindowStatusEnum
  window_type:
    description: The type of windows
    title: window type
    examples:
      - value: fixed window
    keywords:
      - type
      - window
    slot_uri: MIXS:0000856
    range: WindowTypeEnum
  window_vert_pos:
    description: The vertical position of the window on the wall
    title: window vertical position
    examples:
      - value: middle
    keywords:
      - window
    slot_uri: MIXS:0000857
    range: WindowVertPosEnum
  window_water_mold:
    description: Signs of the presence of mold or mildew on the window
    title: window signs of water/mold
    examples:
      - value: no presence of mold visible
    keywords:
      - window
    slot_uri: MIXS:0000854
    range: MoldVisibilityEnum
  x16s_recover:
    description: Can a 16S gene be recovered from the submitted SAG or MAG?
    title: 16S recovered
    examples:
      - value: 'yes'
    in_subset:
      - sequencing
    keywords:
      - recover
    slot_uri: MIXS:0000065
    range: boolean
  x16s_recover_software:
    description: Tools used for 16S rRNA gene extraction
    title: 16S recovery software
    examples:
      - value: rambl;v2;default parameters
    in_subset:
      - sequencing
    keywords:
      - recover
      - software
    slot_uri: MIXS:0000066
    range: string
    pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{software};{version};{parameters}$
      interpolated: true
      partial_match: true
  xylene:
    annotations:
      Preferred_unit: milligram per liter, parts per million
    description: Concentration of xylene in the sample
    title: xylene
    slot_uri: MIXS:0000156
    range: string
    recommended: true
    pattern: ^[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?( *- *[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?)?
      *([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
    structured_pattern:
      syntax: ^{scientific_float}( *- *{scientific_float})? *{text}$
      interpolated: true
      partial_match: true
classes:
  MigsBa:
    description: 'Minimal Information about a Genome Sequence: cultured bacteria/archaea'
    title: MIGS bacteria
    aliases:
      - migs_ba
    is_a: Checklist
    mixin: true
    slots:
      - samp_name
      - lib_screen
      - ref_db
      - nucl_acid_amp
      - lib_size
      - assembly_name
      - temp
      - compl_score
      - nucl_acid_ext
      - samp_size
      - isol_growth_condt
      - alt
      - source_mat_id
      - extrachrom_elements
      - estimated_size
      - samp_vol_we_dna_ext
      - pathogenicity
      - lib_reads_seqd
      - rel_to_oxygen
      - encoded_traits
      - samp_collect_device
      - number_contig
      - biotic_relationship
      - num_replicons
      - lib_layout
      - assembly_qual
      - ref_biomaterial
      - project_name
      - lib_vector
      - host_spec_range
      - neg_cont_type
      - adapters
      - assembly_software
      - tax_ident
      - annot
      - trophic_level
      - pos_cont_type
      - subspecf_gen_lin
      - feat_pred
      - env_local_scale
      - compl_software
      - samp_mat_process
      - sim_search_meth
      - host_disease_stat
      - depth
      - samp_collect_method
      - specific_host
      - env_medium
      - samp_taxon_id
      - geo_loc_name
      - collection_date
      - seq_meth
      - lat_lon
      - elev
      - env_broad_scale
      - tax_class
      - experimental_factor
      - associated_resource
      - sop
    slot_usage:
      adapters:
        recommended: true
      alt:
        recommended: true
      annot:
        recommended: true
      assembly_name:
        recommended: true
      assembly_qual:
        required: true
      assembly_software:
        required: true
      biotic_relationship:
        recommended: true
      depth:
        examples:
          - value: 10 meter
        recommended: true
      elev:
        recommended: true
      extrachrom_elements:
        recommended: true
      host_disease_stat:
        examples:
          - value: rabies [DOID:11260]
        recommended: true
      isol_growth_condt:
        required: true
      nucl_acid_amp:
        recommended: true
      nucl_acid_ext:
        recommended: true
      num_replicons:
        required: true
      number_contig:
        required: true
      pathogenicity:
        recommended: true
      ref_biomaterial:
        required: true
      rel_to_oxygen:
        recommended: true
      samp_collect_device:
        examples:
          - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713]
      samp_collect_method:
        examples:
          - value: swabbing
      sop:
        recommended: true
      source_mat_id:
        recommended: true
      specific_host:
        recommended: true
      subspecf_gen_lin:
        recommended: true
      tax_ident:
        recommended: true
      temp:
        recommended: true
      trophic_level:
        recommended: true
    class_uri: MIXS:0010003
  MigsEu:
    description: 'Minimal Information about a Genome Sequence: eukaryote'
    title: MIGS eukaryote
    aliases:
      - migs_eu
    is_a: Checklist
    mixin: true
    slots:
      - samp_name
      - lib_screen
      - ref_db
      - nucl_acid_amp
      - lib_size
      - assembly_name
      - temp
      - compl_score
      - nucl_acid_ext
      - samp_size
      - isol_growth_condt
      - alt
      - estimated_size
      - extrachrom_elements
      - source_mat_id
      - samp_vol_we_dna_ext
      - ploidy
      - pathogenicity
      - lib_reads_seqd
      - propagation
      - samp_collect_device
      - number_contig
      - biotic_relationship
      - num_replicons
      - lib_layout
      - assembly_qual
      - ref_biomaterial
      - project_name
      - lib_vector
      - host_spec_range
      - neg_cont_type
      - adapters
      - assembly_software
      - tax_ident
      - annot
      - trophic_level
      - pos_cont_type
      - subspecf_gen_lin
      - feat_pred
      - env_local_scale
      - compl_software
      - samp_mat_process
      - sim_search_meth
      - host_disease_stat
      - depth
      - samp_collect_method
      - specific_host
      - env_medium
      - samp_taxon_id
      - geo_loc_name
      - collection_date
      - seq_meth
      - lat_lon
      - elev
      - env_broad_scale
      - tax_class
      - experimental_factor
      - associated_resource
      - sop
    slot_usage:
      adapters:
        recommended: true
      alt:
        recommended: true
      annot:
        recommended: true
      assembly_name:
        recommended: true
      assembly_qual:
        required: true
      assembly_software:
        required: true
      depth:
        examples:
          - value: 10 meter
        recommended: true
      elev:
        recommended: true
      host_disease_stat:
        examples:
          - value: rabies [DOID:11260]
      isol_growth_condt:
        required: true
      nucl_acid_amp:
        recommended: true
      nucl_acid_ext:
        recommended: true
      number_contig:
        required: true
      pathogenicity:
        recommended: true
      propagation:
        recommended: true
      samp_collect_device:
        examples:
          - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713]
      samp_collect_method:
        examples:
          - value: swabbing
      sop:
        recommended: true
      source_mat_id:
        recommended: true
      subspecf_gen_lin:
        recommended: true
      tax_ident:
        recommended: true
      temp:
        recommended: true
      trophic_level:
        recommended: true
    class_uri: MIXS:0010002
  MigsOrg:
    description: 'Minimal Information about a Genome Sequence: organelle'
    title: MIGS org
    aliases:
      - migs_org
    is_a: Checklist
    mixin: true
    slots:
      - samp_name
      - lib_screen
      - ref_db
      - nucl_acid_amp
      - lib_size
      - assembly_name
      - temp
      - compl_score
      - nucl_acid_ext
      - samp_size
      - isol_growth_condt
      - alt
      - source_mat_id
      - extrachrom_elements
      - estimated_size
      - samp_vol_we_dna_ext
      - lib_reads_seqd
      - samp_collect_device
      - number_contig
      - lib_layout
      - assembly_qual
      - ref_biomaterial
      - project_name
      - lib_vector
      - adapters
      - neg_cont_type
      - assembly_software
      - tax_ident
      - annot
      - pos_cont_type
      - subspecf_gen_lin
      - feat_pred
      - env_local_scale
      - compl_software
      - samp_mat_process
      - sim_search_meth
      - depth
      - samp_collect_method
      - env_medium
      - samp_taxon_id
      - geo_loc_name
      - collection_date
      - seq_meth
      - lat_lon
      - elev
      - env_broad_scale
      - tax_class
      - experimental_factor
      - associated_resource
      - sop
    slot_usage:
      adapters:
        recommended: true
      alt:
        recommended: true
      annot:
        recommended: true
      assembly_name:
        recommended: true
      assembly_software:
        required: true
      depth:
        examples:
          - value: 10 meter
        recommended: true
      elev:
        recommended: true
      extrachrom_elements:
        recommended: true
      isol_growth_condt:
        required: true
      nucl_acid_amp:
        recommended: true
      nucl_acid_ext:
        recommended: true
      samp_collect_device:
        examples:
          - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713]
      samp_collect_method:
        examples:
          - value: swabbing
      sop:
        recommended: true
      source_mat_id:
        recommended: true
      subspecf_gen_lin:
        recommended: true
      tax_ident:
        recommended: true
      temp:
        recommended: true
    class_uri: MIXS:0010006
  MigsPl:
    description: 'Minimal Information about a Genome Sequence: plasmid'
    title: MIGS pl
    aliases:
      - migs_pl
    is_a: Checklist
    mixin: true
    slots:
      - samp_name
      - lib_screen
      - ref_db
      - nucl_acid_amp
      - lib_size
      - assembly_name
      - temp
      - compl_score
      - nucl_acid_ext
      - samp_size
      - isol_growth_condt
      - alt
      - source_mat_id
      - estimated_size
      - samp_vol_we_dna_ext
      - lib_reads_seqd
      - encoded_traits
      - propagation
      - samp_collect_device
      - number_contig
      - lib_layout
      - assembly_qual
      - ref_biomaterial
      - project_name
      - lib_vector
      - host_spec_range
      - neg_cont_type
      - adapters
      - assembly_software
      - tax_ident
      - annot
      - pos_cont_type
      - subspecf_gen_lin
      - feat_pred
      - env_local_scale
      - compl_software
      - samp_mat_process
      - sim_search_meth
      - depth
      - samp_collect_method
      - specific_host
      - env_medium
      - samp_taxon_id
      - geo_loc_name
      - collection_date
      - seq_meth
      - lat_lon
      - elev
      - env_broad_scale
      - tax_class
      - experimental_factor
      - associated_resource
      - sop
    slot_usage:
      adapters:
        recommended: true
      alt:
        recommended: true
      annot:
        recommended: true
      assembly_name:
        recommended: true
      assembly_software:
        required: true
      depth:
        examples:
          - value: 10 meter
        recommended: true
      elev:
        recommended: true
      encoded_traits:
        recommended: true
      isol_growth_condt:
        required: true
      nucl_acid_amp:
        recommended: true
      nucl_acid_ext:
        recommended: true
      propagation:
        required: true
      samp_collect_device:
        examples:
          - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713]
      samp_collect_method:
        examples:
          - value: swabbing
      sop:
        recommended: true
      source_mat_id:
        recommended: true
      specific_host:
        recommended: true
      subspecf_gen_lin:
        recommended: true
      tax_ident:
        recommended: true
      temp:
        recommended: true
    class_uri: MIXS:0010004
  MigsVi:
    description: 'Minimal Information about a Genome Sequence: virus'
    title: MIGS virus
    aliases:
      - migs_vi
    is_a: Checklist
    mixin: true
    slots:
      - samp_name
      - lib_screen
      - ref_db
      - nucl_acid_amp
      - lib_size
      - assembly_name
      - temp
      - compl_score
      - nucl_acid_ext
      - samp_size
      - isol_growth_condt
      - alt
      - source_mat_id
      - estimated_size
      - samp_vol_we_dna_ext
      - pathogenicity
      - lib_reads_seqd
      - encoded_traits
      - propagation
      - samp_collect_device
      - number_contig
      - biotic_relationship
      - num_replicons
      - lib_layout
      - assembly_qual
      - ref_biomaterial
      - project_name
      - lib_vector
      - host_spec_range
      - neg_cont_type
      - virus_enrich_appr
      - adapters
      - assembly_software
      - tax_ident
      - annot
      - pos_cont_type
      - subspecf_gen_lin
      - feat_pred
      - env_local_scale
      - compl_software
      - samp_mat_process
      - sim_search_meth
      - host_disease_stat
      - depth
      - samp_collect_method
      - specific_host
      - env_medium
      - samp_taxon_id
      - geo_loc_name
      - collection_date
      - seq_meth
      - lat_lon
      - elev
      - env_broad_scale
      - tax_class
      - experimental_factor
      - associated_resource
      - sop
    slot_usage:
      adapters:
        recommended: true
      alt:
        recommended: true
      annot:
        recommended: true
      assembly_name:
        recommended: true
      assembly_software:
        required: true
      depth:
        examples:
          - value: 10 meter
        recommended: true
      elev:
        recommended: true
      encoded_traits:
        recommended: true
      host_disease_stat:
        examples:
          - value: rabies [DOID:11260]
        recommended: true
      host_spec_range:
        recommended: true
      isol_growth_condt:
        required: true
      nucl_acid_amp:
        recommended: true
      nucl_acid_ext:
        recommended: true
      num_replicons:
        recommended: true
      pathogenicity:
        recommended: true
      propagation:
        required: true
      samp_collect_device:
        examples:
          - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713]
      samp_collect_method:
        examples:
          - value: swabbing
      sop:
        recommended: true
      source_mat_id:
        recommended: true
      specific_host:
        recommended: true
      subspecf_gen_lin:
        recommended: true
      tax_ident:
        recommended: true
      temp:
        recommended: true
      virus_enrich_appr:
        recommended: true
    class_uri: MIXS:0010005
  Mimag:
    description: Minimum Information About a Metagenome-Assembled Genome
    title: MIMAG
    aliases:
      - mimag
    is_a: Checklist
    mixin: true
    slots:
      - samp_name
      - size_frac
      - lib_screen
      - ref_db
      - nucl_acid_amp
      - lib_size
      - contam_screen_input
      - mid
      - assembly_name
      - temp
      - compl_score
      - trnas
      - mag_cov_software
      - nucl_acid_ext
      - samp_size
      - alt
      - bin_param
      - bin_software
      - source_mat_id
      - samp_vol_we_dna_ext
      - lib_reads_seqd
      - rel_to_oxygen
      - reassembly_bin
      - decontam_software
      - samp_collect_device
      - number_contig
      - trna_ext_software
      - lib_layout
      - contam_screen_param
      - assembly_qual
      - ref_biomaterial
      - project_name
      - lib_vector
      - adapters
      - neg_cont_type
      - assembly_software
      - tax_ident
      - contam_score
      - annot
      - x16s_recover_software
      - x16s_recover
      - pos_cont_type
      - feat_pred
      - compl_software
      - env_local_scale
      - samp_mat_process
      - sim_search_meth
      - depth
      - samp_collect_method
      - compl_appr
      - env_medium
      - samp_taxon_id
      - geo_loc_name
      - collection_date
      - seq_meth
      - lat_lon
      - elev
      - env_broad_scale
      - tax_class
      - experimental_factor
      - associated_resource
      - sop
    slot_usage:
      adapters:
        recommended: true
      alt:
        recommended: true
      assembly_name:
        recommended: true
      assembly_qual:
        required: true
      assembly_software:
        required: true
      bin_param:
        required: true
      bin_software:
        required: true
      compl_score:
        required: true
      compl_software:
        required: true
      contam_score:
        required: true
      depth:
        examples:
          - value: 10 meter
        recommended: true
      elev:
        recommended: true
      experimental_factor:
        recommended: true
      lib_layout:
        recommended: true
      lib_reads_seqd:
        recommended: true
      lib_screen:
        recommended: true
      lib_size:
        recommended: true
      lib_vector:
        recommended: true
      mid:
        recommended: true
      nucl_acid_amp:
        recommended: true
      nucl_acid_ext:
        recommended: true
      samp_collect_device:
        examples:
          - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713]
        recommended: true
      samp_collect_method:
        examples:
          - value: swabbing
        recommended: true
      samp_mat_process:
        recommended: true
      samp_size:
        recommended: true
      sop:
        recommended: true
      source_mat_id:
        recommended: true
      tax_ident:
        required: true
      temp:
        recommended: true
    class_uri: MIXS:0010011
  MimarksC:
    description: 'Minimal Information about a Marker Sequence: specimen'
    title: MIMARKS specimen
    comments:
      - for marker gene sequences from cultured or voucher-identifiable specimens
    aliases:
      - mimarks_c
      - MIMARKS-SU
      - MIMARKS-specimen
    is_a: Checklist
    mixin: true
    slots:
      - samp_name
      - pcr_primers
      - nucl_acid_amp
      - target_subfragment
      - temp
      - pcr_cond
      - nucl_acid_ext
      - samp_size
      - isol_growth_condt
      - alt
      - source_mat_id
      - extrachrom_elements
      - samp_vol_we_dna_ext
      - rel_to_oxygen
      - samp_collect_device
      - biotic_relationship
      - seq_quality_check
      - project_name
      - neg_cont_type
      - chimera_check
      - trophic_level
      - pos_cont_type
      - subspecf_gen_lin
      - env_local_scale
      - samp_mat_process
      - depth
      - samp_collect_method
      - env_medium
      - samp_taxon_id
      - geo_loc_name
      - collection_date
      - seq_meth
      - lat_lon
      - elev
      - env_broad_scale
      - experimental_factor
      - target_gene
      - associated_resource
      - sop
    slot_usage:
      alt:
        recommended: true
      biotic_relationship:
        recommended: true
      chimera_check:
        recommended: true
      depth:
        examples:
          - value: 10 meter
        recommended: true
      elev:
        recommended: true
      isol_growth_condt:
        required: true
      nucl_acid_amp:
        recommended: true
      nucl_acid_ext:
        recommended: true
      pcr_cond:
        recommended: true
      pcr_primers:
        recommended: true
      rel_to_oxygen:
        recommended: true
      samp_collect_device:
        examples:
          - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713]
      samp_collect_method:
        examples:
          - value: swabbing
      samp_mat_process:
        recommended: true
      seq_quality_check:
        recommended: true
      sop:
        recommended: true
      source_mat_id:
        recommended: true
      subspecf_gen_lin:
        recommended: true
      target_gene:
        required: true
      target_subfragment:
        recommended: true
      temp:
        recommended: true
      trophic_level:
        recommended: true
    class_uri: MIXS:0010009
  MimarksS:
    description: 'Minimal Information about a Marker Sequence: survey'
    title: MIMARKS survey
    comments:
      - for marker gene sequences obtained directly from the environment
    aliases:
      - mimarks_s
      - MIMARKS-SP
      - MIMARKS-survey
    is_a: Checklist
    mixin: true
    slots:
      - samp_name
      - pcr_primers
      - size_frac
      - lib_screen
      - nucl_acid_amp
      - lib_size
      - target_subfragment
      - mid
      - temp
      - nucl_acid_ext
      - samp_size
      - alt
      - source_mat_id
      - samp_vol_we_dna_ext
      - lib_reads_seqd
      - rel_to_oxygen
      - samp_collect_device
      - seq_quality_check
      - lib_layout
      - env_broad_scale
      - project_name
      - lib_vector
      - adapters
      - neg_cont_type
      - assembly_software
      - chimera_check
      - pos_cont_type
      - env_local_scale
      - samp_mat_process
      - depth
      - samp_collect_method
      - env_medium
      - samp_taxon_id
      - geo_loc_name
      - collection_date
      - seq_meth
      - lat_lon
      - elev
      - pcr_cond
      - experimental_factor
      - target_gene
      - associated_resource
      - sop
    slot_usage:
      adapters:
        recommended: true
      alt:
        recommended: true
      assembly_software:
        recommended: true
      chimera_check:
        recommended: true
      depth:
        examples:
          - value: 10 meter
        recommended: true
      elev:
        recommended: true
      experimental_factor:
        recommended: true
      lib_layout:
        recommended: true
      lib_reads_seqd:
        recommended: true
      lib_screen:
        recommended: true
      lib_size:
        recommended: true
      lib_vector:
        recommended: true
      mid:
        recommended: true
      nucl_acid_amp:
        recommended: true
      nucl_acid_ext:
        recommended: true
      pcr_cond:
        recommended: true
      pcr_primers:
        recommended: true
      samp_collect_device:
        examples:
          - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713]
        recommended: true
      samp_collect_method:
        examples:
          - value: swabbing
        recommended: true
      samp_mat_process:
        recommended: true
      samp_size:
        recommended: true
      seq_quality_check:
        recommended: true
      sop:
        recommended: true
      source_mat_id:
        recommended: true
      target_gene:
        required: true
      target_subfragment:
        recommended: true
      temp:
        recommended: true
    class_uri: MIXS:0010008
  Mims:
    description: Metagenome or Environmental
    title: MIMS
    aliases:
      - mims
    is_a: Checklist
    mixin: true
    slots:
      - samp_name
      - size_frac
      - lib_screen
      - ref_db
      - nucl_acid_amp
      - lib_size
      - mid
      - assembly_name
      - temp
      - nucl_acid_ext
      - samp_size
      - alt
      - source_mat_id
      - samp_vol_we_dna_ext
      - lib_reads_seqd
      - rel_to_oxygen
      - samp_collect_device
      - number_contig
      - lib_layout
      - assembly_qual
      - ref_biomaterial
      - project_name
      - lib_vector
      - adapters
      - neg_cont_type
      - assembly_software
      - annot
      - pos_cont_type
      - feat_pred
      - env_local_scale
      - samp_mat_process
      - sim_search_meth
      - depth
      - samp_collect_method
      - env_medium
      - samp_taxon_id
      - geo_loc_name
      - collection_date
      - seq_meth
      - lat_lon
      - elev
      - env_broad_scale
      - tax_class
      - experimental_factor
      - associated_resource
      - sop
    slot_usage:
      adapters:
        recommended: true
      alt:
        recommended: true
      annot:
        recommended: true
      assembly_name:
        recommended: true
      assembly_qual:
        recommended: true
      assembly_software:
        recommended: true
      depth:
        examples:
          - value: 10 meter
        recommended: true
      elev:
        recommended: true
      experimental_factor:
        recommended: true
      lib_layout:
        recommended: true
      lib_reads_seqd:
        recommended: true
      lib_screen:
        recommended: true
      lib_size:
        recommended: true
      lib_vector:
        recommended: true
      mid:
        recommended: true
      nucl_acid_amp:
        recommended: true
      nucl_acid_ext:
        recommended: true
      number_contig:
        recommended: true
      samp_collect_device:
        examples:
          - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713]
        recommended: true
      samp_collect_method:
        examples:
          - value: swabbing
        recommended: true
      samp_mat_process:
        recommended: true
      samp_size:
        recommended: true
      sop:
        recommended: true
      source_mat_id:
        recommended: true
      temp:
        recommended: true
    class_uri: MIXS:0010007
  Misag:
    description: Minimum Information About a Single Amplified Genome
    title: Minimum Information About a Single Amplified Genome
    aliases:
      - misag
    is_a: Checklist
    mixin: true
    slots:
      - samp_name
      - size_frac
      - lib_screen
      - ref_db
      - nucl_acid_amp
      - lib_size
      - contam_screen_input
      - mid
      - assembly_name
      - temp
      - compl_score
      - trnas
      - nucl_acid_ext
      - samp_size
      - alt
      - source_mat_id
      - samp_vol_we_dna_ext
      - lib_reads_seqd
      - rel_to_oxygen
      - wga_amp_kit
      - decontam_software
      - samp_collect_device
      - number_contig
      - trna_ext_software
      - sc_lysis_method
      - lib_layout
      - contam_screen_param
      - assembly_qual
      - ref_biomaterial
      - project_name
      - lib_vector
      - adapters
      - neg_cont_type
      - assembly_software
      - tax_ident
      - contam_score
      - annot
      - x16s_recover_software
      - x16s_recover
      - pos_cont_type
      - feat_pred
      - compl_software
      - env_local_scale
      - sort_tech
      - samp_mat_process
      - sim_search_meth
      - depth
      - samp_collect_method
      - wga_amp_appr
      - compl_appr
      - env_medium
      - samp_taxon_id
      - geo_loc_name
      - sc_lysis_approach
      - collection_date
      - seq_meth
      - lat_lon
      - elev
      - env_broad_scale
      - tax_class
      - experimental_factor
      - associated_resource
      - sop
    slot_usage:
      adapters:
        recommended: true
      alt:
        recommended: true
      assembly_name:
        recommended: true
      assembly_qual:
        required: true
      assembly_software:
        required: true
      compl_score:
        required: true
      compl_software:
        required: true
      contam_score:
        required: true
      depth:
        examples:
          - value: 10 meter
        recommended: true
      elev:
        recommended: true
      experimental_factor:
        recommended: true
      lib_layout:
        recommended: true
      lib_reads_seqd:
        recommended: true
      lib_screen:
        recommended: true
      lib_size:
        recommended: true
      lib_vector:
        recommended: true
      mid:
        recommended: true
      nucl_acid_amp:
        recommended: true
      nucl_acid_ext:
        recommended: true
      samp_collect_device:
        examples:
          - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713]
        recommended: true
      samp_collect_method:
        examples:
          - value: swabbing
        recommended: true
      samp_mat_process:
        recommended: true
      samp_size:
        recommended: true
      sc_lysis_approach:
        required: true
      sop:
        recommended: true
      sort_tech:
        required: true
      source_mat_id:
        recommended: true
      tax_ident:
        required: true
      temp:
        recommended: true
      wga_amp_appr:
        required: true
    class_uri: MIXS:0010010
  Miuvig:
    description: Minimum Information About an Uncultivated Virus Genome
    title: Minimum Information About an Uncultivated Virus Genome
    aliases:
      - miuvig
    is_a: Checklist
    mixin: true
    slots:
      - samp_name
      - size_frac
      - lib_screen
      - source_uvig
      - ref_db
      - nucl_acid_amp
      - lib_size
      - mid
      - assembly_name
      - temp
      - compl_score
      - trnas
      - nucl_acid_ext
      - samp_size
      - alt
      - estimated_size
      - source_mat_id
      - samp_vol_we_dna_ext
      - pathogenicity
      - lib_reads_seqd
      - samp_collect_device
      - number_contig
      - biotic_relationship
      - trna_ext_software
      - lib_layout
      - assembly_qual
      - ref_biomaterial
      - project_name
      - lib_vector
      - host_spec_range
      - neg_cont_type
      - virus_enrich_appr
      - adapters
      - assembly_software
      - tax_ident
      - annot
      - pos_cont_type
      - feat_pred
      - compl_software
      - env_local_scale
      - samp_mat_process
      - sim_search_meth
      - host_disease_stat
      - depth
      - samp_collect_method
      - compl_appr
      - specific_host
      - env_medium
      - samp_taxon_id
      - geo_loc_name
      - collection_date
      - seq_meth
      - lat_lon
      - elev
      - env_broad_scale
      - tax_class
      - experimental_factor
      - sort_tech
      - sc_lysis_approach
      - sc_lysis_method
      - wga_amp_appr
      - wga_amp_kit
      - bin_param
      - bin_software
      - reassembly_bin
      - mag_cov_software
      - vir_ident_software
      - pred_genome_type
      - pred_genome_struc
      - detec_type
      - otu_class_appr
      - otu_seq_comp_appr
      - otu_db
      - host_pred_appr
      - host_pred_est_acc
      - associated_resource
      - sop
    slot_usage:
      adapters:
        recommended: true
      alt:
        recommended: true
      assembly_name:
        recommended: true
      assembly_qual:
        required: true
      assembly_software:
        required: true
      bin_param:
        recommended: true
      bin_software:
        recommended: true
      compl_appr:
        recommended: true
      compl_score:
        recommended: true
      depth:
        examples:
          - value: 10 meter
        recommended: true
      detec_type:
        required: true
      elev:
        recommended: true
      experimental_factor:
        recommended: true
      feat_pred:
        recommended: true
      host_disease_stat:
        examples:
          - value: rabies [DOID:11260]
        recommended: true
      host_pred_appr:
        recommended: true
      host_pred_est_acc:
        recommended: true
      lib_layout:
        recommended: true
      lib_reads_seqd:
        recommended: true
      lib_screen:
        recommended: true
      lib_size:
        recommended: true
      lib_vector:
        recommended: true
      mid:
        recommended: true
      nucl_acid_amp:
        recommended: true
      nucl_acid_ext:
        recommended: true
      number_contig:
        required: true
      otu_class_appr:
        recommended: true
      otu_db:
        recommended: true
      otu_seq_comp_appr:
        recommended: true
      pred_genome_struc:
        required: true
      pred_genome_type:
        required: true
      reassembly_bin:
        recommended: true
      ref_db:
        recommended: true
      samp_collect_device:
        examples:
          - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713]
        recommended: true
      samp_collect_method:
        examples:
          - value: swabbing
        recommended: true
      samp_mat_process:
        recommended: true
      samp_size:
        recommended: true
      sc_lysis_approach:
        recommended: true
      sc_lysis_method:
        recommended: true
      sim_search_meth:
        recommended: true
      size_frac:
        recommended: true
      sop:
        recommended: true
      sort_tech:
        recommended: true
      source_mat_id:
        recommended: true
      source_uvig:
        required: true
      tax_class:
        recommended: true
      temp:
        recommended: true
      vir_ident_software:
        required: true
      virus_enrich_appr:
        required: true
      wga_amp_appr:
        recommended: true
      wga_amp_kit:
        recommended: true
    class_uri: MIXS:0010012
  Agriculture:
    description: >-
      A collection of terms appropriate when sequencing samples obtained in an agricultural environment. 
      Suitable to capture metadata appropriate to enhance crop productivity and agroecosystem health 
      with the aim to facilitate research of agricultural microbiomes and their relationships to plant productivity 
      and sustainable crop production from diverse crop management contexts.
    title: agriculture
    is_a: Extension
    slots:
      - plant_growth_med
      - photosynt_activ
      - photosynt_activ_meth
      - samp_collect_method
      - enrichment_protocol
      - library_prep_kit
      - sequencing_location
      - soil_temp
      - soil_pH
      - soil_conductivity
      - rel_location
      - soil_cover
      - porosity
      - soil_texture
      - soil_texture_meth
      - host_symbiont
      - host_disease_stat
      - pres_animal_insect
      - plant_water_method
      - anim_water_method
      - farm_water_source
      - water_source_shared
      - water_pH
      - elev
      - season
      - solar_irradiance
      - crop_yield
      - season_humidity
      - humidity
      - adjacent_environment
      - chem_administration
      - food_prod
      - lot_number
      - fertilizer_admin
      - samp_store_temp
      - food_trav_mode
      - food_trav_vehic
      - farm_equip_san
      - farm_equip
      - farm_equip_shared
      - food_harvest_proc
      - plant_struc
      - host_dry_mass
      - ances_data
      - genetic_mod
      - food_product_type
      - food_source
      - spikein_strain
      - organism_count
      - size_frac_low
      - size_frac_up
      - cult_isol_date
      - samp_pooling
      - root_med_macronutr
      - root_med_carbon
      - root_med_ph
      - depth
      - specific_host
      - pathogenicity
      - biotic_relationship
      - water_temp_regm
      - watering_regm
      - standing_water_regm
      - gaseous_environment
      - fungicide_regm
      - climate_environment
      - herbicide_regm
      - non_min_nutr_regm
      - pesticide_regm
      - ph_regm
      - salt_regm
      - season_environment
      - temp
      - perturbation
      - isol_growth_condt
      - samp_store_dur
      - samp_store_loc
      - samp_collect_device
      - samp_mat_process
      - host_age
      - host_common_name
      - host_genotype
      - host_height
      - host_subspecf_genlin
      - host_length
      - host_life_stage
      - host_phenotype
      - host_taxid
      - host_tot_mass
      - host_spec_range
      - trophic_level
      - plant_product
      - samp_size
      - oxy_stat_samp
      - seq_meth
      - samp_vol_we_dna_ext
      - pcr_primers
      - nucl_acid_ext
      - nucl_acid_amp
      - lib_size
      - lib_reads_seqd
      - lib_layout
      - lib_vector
      - lib_screen
      - target_gene
      - target_subfragment
      - mid
      - adapters
      - pcr_cond
      - seq_quality_check
      - chimera_check
      - assembly_name
      - assembly_qual
      - assembly_software
      - annot
      - associated_resource
      - sop
      - source_mat_id
      - fao_class
      - local_class
      - local_class_meth
      - soil_type
      - soil_type_meth
      - soil_horizon
      - horizon_meth
      - link_class_info
      - previous_land_use
      - prev_land_use_meth
      - crop_rotation
      - agrochem_addition
      - tillage
      - fire
      - flooding
      - extreme_event
      - link_climate_info
      - annual_temp
      - season_temp
      - annual_precpt
      - season_precpt
      - cur_land_use
      - slope_gradient
      - slope_aspect
      - profile_position
      - drainage_class
      - store_cond
      - ph_meth
      - cur_vegetation
      - cur_vegetation_meth
      - tot_org_carb
      - tot_org_c_meth
      - tot_nitro_content
      - tot_nitro_cont_meth
      - microbial_biomass
      - micro_biomass_meth
      - heavy_metals_meth
      - tot_carb
      - tot_phosphate
      - sieving
      - pool_dna_extracts
      - misc_param
    slot_usage:
      adapters:
        required: true
      annot:
        recommended: true
      assembly_name:
        required: true
      biotic_relationship:
        recommended: true
      chem_administration:
        required: true
      chimera_check:
        required: true
      climate_environment:
        string_serialization: '{text};{period};{interval};{period}'
        recommended: true
      crop_rotation:
        string_serialization: '{boolean};Rn/{timestamp}/{period}'
        recommended: true
      cur_vegetation:
        recommended: true
      cur_vegetation_meth:
        recommended: true
      depth:
        examples:
          - value: 5 cm
        recommended: true
      drainage_class:
        recommended: true
      enrichment_protocol:
        recommended: true
      extreme_event:
        recommended: true
      fao_class:
        recommended: true
      fire:
        recommended: true
      flooding:
        recommended: true
      food_product_type:
        examples:
          - value: delicatessen salad; FOODON:03316276
      food_source:
        examples:
          - value: red swamp crayfish; FOODON:03412231
        required: true
      fungicide_regm:
        string_serialization: '{text};{float} {unit};{period};{interval};{period}'
        recommended: true
      gaseous_environment:
        string_serialization: '{text};{float} {unit};{period};{interval};{period}'
        recommended: true
      heavy_metals_meth:
        string_serialization: '{PMID|DOI|URL}'
        recommended: true
      herbicide_regm:
        string_serialization: '{text};{float} {unit};{period};{interval};{period}'
        recommended: true
      horizon_meth:
        recommended: true
      host_age:
        required: true
      host_common_name:
        required: true
      host_disease_stat:
        examples:
          - value: downy mildew
        recommended: true
      host_genotype:
        required: true
      host_height:
        required: true
      host_length:
        required: true
      host_life_stage:
        required: true
      host_phenotype:
        required: true
      host_spec_range:
        required: true
      host_symbiont:
        examples:
          - value: Paragordius varius
      host_taxid:
        examples:
          - value: '9606'
        string_serialization: '{integer}'
        required: true
      host_tot_mass:
        required: true
      humidity:
        examples:
          - value: 30% relative humidity
        recommended: true
      lib_layout:
        recommended: true
      lib_reads_seqd:
        required: true
      lib_screen:
        required: true
      lib_vector:
        required: true
      library_prep_kit:
        examples:
          - value: llumina DNA Prep, (M) Tagmentation
      local_class:
        recommended: true
      local_class_meth:
        recommended: true
      micro_biomass_meth:
        required: true
      microbial_biomass:
        required: true
      mid:
        required: true
      non_min_nutr_regm:
        string_serialization: '{text};{float} {unit};{period};{interval};{period}'
        recommended: true
      nucl_acid_amp:
        required: true
      nucl_acid_ext:
        required: true
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 cells per milliliter;qPCR
        recommended: true
      oxy_stat_samp:
        recommended: true
      pathogenicity:
        required: true
      pcr_cond:
        required: true
      pcr_primers:
        required: true
      perturbation:
        recommended: true
      pesticide_regm:
        string_serialization: '{text};{float} {unit};{period};{interval};{period}'
        recommended: true
      ph_meth:
        recommended: true
      ph_regm:
        string_serialization: '{float};{period};{interval};{period}'
        recommended: true
      plant_growth_med:
        examples:
          - value: hydroponic plant culture media [EO:0007067]
      plant_product:
        recommended: true
      plant_struc:
        recommended: true
      pool_dna_extracts:
        string_serialization: '{boolean};{float} {unit}'
        required: true
      prev_land_use_meth:
        recommended: true
      previous_land_use:
        recommended: true
      profile_position:
        recommended: true
      rel_location:
        recommended: true
      salt_regm:
        string_serialization: '{text};{float} {unit};{period};{interval};{period}'
        recommended: true
      samp_collect_device:
        examples:
          - value: biopsy, niskin bottle, push core
        required: true
      samp_collect_method:
        examples:
          - value: environmental swab sampling
      samp_mat_process:
        required: true
      samp_pooling:
        recommended: true
      samp_size:
        required: true
      samp_store_dur:
        required: true
      samp_store_loc:
        required: true
      samp_vol_we_dna_ext:
        required: true
      season_environment:
        string_serialization: '{text};{period};{interval};{period}'
        recommended: true
      sieving:
        required: true
      slope_aspect:
        recommended: true
      slope_gradient:
        recommended: true
      soil_conductivity:
        description: Conductivity of some soil.
      soil_cover:
        recommended: true
      soil_horizon:
        recommended: true
      soil_pH:
        description: pH of some soil.
      soil_type:
        required: true
      soil_type_meth:
        required: true
      specific_host:
        required: true
      standing_water_regm:
        string_serialization: '{text};{period};{interval};{period}'
        recommended: true
      store_cond:
        required: true
      target_gene:
        required: true
      target_subfragment:
        required: true
      temp:
        required: true
      tillage:
        recommended: true
      tot_carb:
        recommended: true
      tot_nitro_cont_meth:
        recommended: true
      tot_nitro_content:
        recommended: true
      tot_org_c_meth:
        recommended: true
      tot_org_carb:
        recommended: true
      tot_phosphate:
        recommended: true
      trophic_level:
        recommended: true
      water_pH:
        description: The pH measurement of the sample, or liquid portion of sample,
          or aqueous phase of the fluid.
      water_temp_regm:
        string_serialization: '{float} {unit};{period};{interval};{period}'
        recommended: true
      watering_regm:
        string_serialization: '{float} {unit};{period};{interval};{period}'
        recommended: true
    class_uri: MIXS:0016018
    aliases:
      - MIxS-Ag (agriculture)
    annotations:
      use_cases: Agricultural Microbiomes Research Coordination Network, model cropping and plant systems focused on agricultural plant and soil microbe; microbiome studies in agricultural sites; long-term ecological research in croplands; eDNA in manure samples; describing agricultural microbiome studies
  Air:
    description: >-
      A collection of terms appropriate when collecting and sequencing samples obtained from a gaseous environment.
    title: air
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - alt
      - elev
      - barometric_press
      - carb_dioxide
      - carb_monoxide
      - chem_administration
      - humidity
      - methane
      - organism_count
      - oxygen
      - oxy_stat_samp
      - perturbation
      - pollutants
      - air_PM_concen
      - salinity
      - samp_store_dur
      - samp_store_loc
      - samp_store_temp
      - samp_vol_we_dna_ext
      - solar_irradiance
      - temp
      - ventilation_rate
      - ventilation_type
      - volatile_org_comp
      - wind_direction
      - wind_speed
      - misc_param
    slot_usage:
      alt:
        required: true
      elev:
        recommended: true
      humidity:
        examples:
          - value: 25 gram per cubic meter
      methane:
        examples:
          - value: 1800 parts per billion
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 cells per milliliter;qPCR
      wind_direction:
        examples:
          - value: Northwest
      wind_speed:
        examples:
          - value: 21 kilometer per hour
    class_uri: MIXS:0016000
    aliases:
      - MIxS-air
    annotations:
      use_cases: bioaerosol samples, pathogen load in urban air, aerosols
  BuiltEnvironment:
    description: >-
      A collection of terms appropriate when collecting samples and sequencing samples obtained in the 
      built-up environment, which includes terms for surface material, humidity, temperature, moisture and 
      occupancy type along with specific metadata terms describing the indoor air, building and sample properties.
    title: built environment
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - surf_material
      - surf_air_cont
      - rel_air_humidity
      - abs_air_humidity
      - surf_humidity
      - air_temp
      - surf_temp
      - surf_moisture_ph
      - build_occup_type
      - surf_moisture
      - dew_point
      - carb_dioxide
      - ventilation_type
      - organism_count
      - indoor_space
      - indoor_surf
      - filter_type
      - heat_cool_type
      - substructure_type
      - building_setting
      - light_type
      - samp_sort_meth
      - space_typ_state
      - typ_occup_density
      - occup_samp
      - occup_density_samp
      - address
      - adj_room
      - aero_struc
      - amount_light
      - arch_struc
      - avg_occup
      - avg_dew_point
      - avg_temp
      - bathroom_count
      - bedroom_count
      - built_struc_age
      - built_struc_set
      - built_struc_type
      - ceil_area
      - ceil_cond
      - ceil_finish_mat
      - ceil_water_mold
      - ceil_struc
      - ceil_texture
      - ceil_thermal_mass
      - ceil_type
      - cool_syst_id
      - date_last_rain
      - build_docs
      - door_size
      - door_cond
      - door_direct
      - door_loc
      - door_mat
      - door_move
      - door_water_mold
      - door_type
      - door_comp_type
      - door_type_metal
      - door_type_wood
      - drawings
      - elevator
      - escalator
      - exp_duct
      - exp_pipe
      - ext_door
      - fireplace_type
      - floor_age
      - floor_area
      - floor_cond
      - floor_count
      - floor_finish_mat
      - floor_water_mold
      - floor_struc
      - floor_thermal_mass
      - freq_clean
      - freq_cook
      - furniture
      - gender_restroom
      - hall_count
      - handidness
      - heat_deliv_loc
      - heat_sys_deliv_meth
      - heat_system_id
      - height_carper_fiber
      - inside_lux
      - int_wall_cond
      - last_clean
      - max_occup
      - mech_struc
      - number_plants
      - number_pets
      - number_resident
      - occup_document
      - ext_wall_orient
      - ext_window_orient
      - rel_humidity_out
      - pres_animal_insect
      - quad_pos
      - rel_samp_loc
      - room_air_exch_rate
      - room_architec_elem
      - room_condt
      - room_count
      - room_dim
      - room_door_dist
      - room_loc
      - room_moist_dam_hist
      - room_net_area
      - room_occup
      - room_samp_pos
      - room_type
      - room_vol
      - room_window_count
      - room_connected
      - room_hallway
      - room_door_share
      - room_wall_share
      - samp_weather
      - samp_floor
      - samp_room_id
      - samp_time_out
      - season
      - season_use
      - shading_device_cond
      - shading_device_loc
      - shading_device_mat
      - shad_dev_water_mold
      - shading_device_type
      - specific_humidity
      - specific
      - temp_out
      - train_line
      - train_stat_loc
      - train_stop_loc
      - vis_media
      - wall_area
      - wall_const_type
      - wall_finish_mat
      - wall_height
      - wall_loc
      - wall_water_mold
      - wall_surf_treatment
      - wall_texture
      - wall_thermal_mass
      - water_feat_size
      - water_feat_type
      - weekday
      - window_size
      - window_cond
      - window_cover
      - window_horiz_pos
      - window_loc
      - window_mat
      - window_open_freq
      - window_water_mold
      - window_status
      - window_type
      - window_vert_pos
    slot_usage:
      air_temp:
        examples:
          - value: 20 degree Celsius
        required: true
      avg_occup:
        examples:
          - value: '2'
      carb_dioxide:
        required: true
      freq_clean:
        string_serialization: '[ Daily| Weekly| Monthly| Quarterly | Annually| other]'
      indoor_surf:
        required: true
        recommended: true
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 cells per milliliter;qPCR
        required: true
      surf_material:
        required: true
        recommended: true
      ventilation_type:
        required: true
    class_uri: MIXS:0016001
    aliases:
      - MIxS-BE (built environment)
    annotations:
      use_cases: microbiology studies of the built environment, NASA space station sampling, MetaSUB transit system sampling, home, hospitals, office buildings
  FoodAnimalAndAnimalFeed:
    description: >-
      A collection of terms appropriate when collecting samples and performing sequencing of samples 
      obtained from farm animals and their feed.
    comments:
      - This extension is intended to work alongside the other food extensions
        (farm environment, food production facility, and human foods) for capturing contextual data
        across the food supply-chain environment.
    title: food-animal and animal feed
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - lat_lon
      - geo_loc_name
      - collection_date
      - seq_meth
      - samp_size
      - samp_collect_device
      - experimental_factor
      - nucl_acid_ext
      - organism_count
      - spikein_count
      - samp_store_temp
      - samp_store_dur
      - samp_vol_we_dna_ext
      - pool_dna_extracts
      - temp
      - samp_store_loc
      - samp_transport_cont
      - perturbation
      - coll_site_geo_feat
      - food_origin
      - food_prod
      - food_product_type
      - food_source
      - IFSAC_category
      - intended_consumer
      - samp_purpose
      - animal_am
      - animal_am_dur
      - animal_am_freq
      - animal_am_route
      - animal_am_use
      - animal_body_cond
      - animal_diet
      - animal_feed_equip
      - animal_group_size
      - animal_housing
      - animal_sex
      - bacterial_density
      - cons_food_stor_dur
      - cons_food_stor_temp
      - cons_purch_date
      - cons_qty_purchased
      - cult_isol_date
      - cult_result
      - cult_result_org
      - cult_target
      - enrichment_protocol
      - food_additive
      - food_contact_surf
      - food_contain_wrap
      - food_cooking_proc
      - food_dis_point
      - food_dis_point_city
      - food_ingredient
      - food_pack_capacity
      - food_pack_integrity
      - food_pack_medium
      - food_preserv_proc
      - food_prior_contact
      - food_prod_synonym
      - food_product_qual
      - food_quality_date
      - food_source_age
      - food_trace_list
      - food_trav_mode
      - food_trav_vehic
      - food_treat_proc
      - HACCP_term
      - library_prep_kit
      - lot_number
      - microb_cult_med
      - part_plant_animal
      - repository_name
      - samp_collect_method
      - samp_pooling
      - samp_rep_biol
      - samp_rep_tech
      - samp_source_mat_cat
      - samp_stor_device
      - samp_stor_media
      - samp_transport_dur
      - samp_transport_temp
      - sequencing_kit
      - sequencing_location
      - serovar_or_serotype
      - spikein_AMR
      - spikein_antibiotic
      - spikein_growth_med
      - spikein_metal
      - spikein_org
      - spikein_serovar
      - spikein_strain
      - study_design
      - study_inc_dur
      - study_inc_temp
      - study_timecourse
      - study_tmnt
      - timepoint
      - misc_param
    slot_usage:
      food_origin:
        required: true
      food_pack_medium:
        examples:
          - value: packed in fruit juice [FOODON:03480039]
      food_prod:
        required: true
      food_product_type:
        examples:
          - value: shrimp (peeled, deep-frozen) [FOODON:03317171]
        required: true
      food_source:
        examples:
          - value: giant tiger prawn [FOODON:03412612]
      intended_consumer:
        required: true
      library_prep_kit:
        examples:
          - value: Illumina DNA Prep
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 colony forming units per milliliter;qPCR
      pool_dna_extracts:
        string_serialization: '{boolean},{integer}'
      samp_collect_device:
        examples:
          - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713]
      samp_collect_method:
        examples:
          - value: environmental swab sampling
      samp_purpose:
        required: true
    class_uri: MIXS:0016019
    aliases:
      - MIxS-Food (animal and animal feed)
    annotations:
      use_cases: Microbiome of farm animals, their feed, and pet food.
  FoodFarmEnvironment:
    description: >-
      A collection of terms appropriate when collecting samples and performing sequencing of samples 
      obtained from the farm environment, including soil, manure, and food harvesting equipment.
    comments:
      - This extension is intended to work alongside the other food extensions
        (animals and animal feed, food production facility, and human foods)
        for capturing contextual data across the food supply-chain environment.
    title: food-farm environment
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - lat_lon
      - geo_loc_name
      - collection_date
      - seq_meth
      - samp_size
      - samp_collect_device
      - nucl_acid_ext
      - humidity
      - organism_count
      - spikein_count
      - samp_store_temp
      - solar_irradiance
      - ventilation_rate
      - samp_store_dur
      - wind_speed
      - salinity
      - samp_vol_we_dna_ext
      - previous_land_use
      - crop_rotation
      - soil_type_meth
      - tot_org_c_meth
      - tot_nitro_cont_meth
      - host_age
      - host_dry_mass
      - host_height
      - host_length
      - host_tot_mass
      - root_med_carbon
      - root_med_macronutr
      - root_med_micronutr
      - depth
      - season_temp
      - season_precpt
      - tot_org_carb
      - tot_nitro_content
      - conduc
      - turbidity
      - size_frac_low
      - size_frac_up
      - temp
      - ventilation_type
      - wind_direction
      - genetic_mod
      - host_phenotype
      - ph
      - ances_data
      - biotic_regm
      - chem_administration
      - growth_habit
      - host_disease_stat
      - host_genotype
      - host_taxid
      - mechanical_damage
      - perturbation
      - root_cond
      - root_med_ph
      - tillage
      - ph_meth
      - growth_medium
      - season
      - food_product_type
      - samp_type
      - farm_water_source
      - plant_water_method
      - air_PM_concen
      - animal_feed_equip
      - animal_intrusion
      - anim_water_method
      - crop_yield
      - cult_result
      - cult_result_org
      - cult_target
      - plant_part_maturity
      - adjacent_environment
      - water_source_adjac
      - farm_equip_shared
      - farm_equip_san
      - farm_equip_san_freq
      - farm_equip
      - fertilizer_admin
      - fertilizer_date
      - animal_group_size
      - animal_diet
      - food_contact_surf
      - food_contain_wrap
      - food_harvest_proc
      - food_pack_medium
      - food_preserv_proc
      - food_prod_char
      - prod_label_claims
      - food_trav_mode
      - food_trav_vehic
      - food_source
      - food_treat_proc
      - extr_weather_event
      - date_extr_weath
      - host_subspecf_genlin
      - intended_consumer
      - library_prep_kit
      - air_flow_impede
      - lot_number
      - season_humidity
      - part_plant_animal
      - plant_growth_med
      - plant_reprod_crop
      - samp_purpose
      - repository_name
      - samp_pooling
      - samp_source_mat_cat
      - sequencing_kit
      - sequencing_location
      - serovar_or_serotype
      - soil_conductivity
      - soil_cover
      - soil_pH
      - rel_location
      - soil_porosity
      - soil_temp
      - soil_texture_class
      - soil_texture_meth
      - soil_type
      - spikein_org
      - spikein_serovar
      - spikein_growth_med
      - spikein_strain
      - spikein_antibiotic
      - spikein_metal
      - timepoint
      - water_frequency
      - water_pH
      - water_source_shared
      - enrichment_protocol
      - food_quality_date
      - IFSAC_category
      - animal_housing
      - cult_isol_date
      - food_clean_proc
      - misc_param
    slot_usage:
      biotic_regm:
        required: true
      chem_administration:
        required: true
      crop_rotation:
        string_serialization: '{boolean};{Rn/start_time/end_time/duration}'
      depth:
        examples:
          - value: 10 meter
        required: true
      food_pack_medium:
        examples:
          - value: vacuum-packed [FOODON:03480027]
      food_product_type:
        examples:
          - value: shrimp (peeled, deep-frozen) [FOODON:03317171]
        required: true
      food_source:
        examples:
          - value: giant tiger prawn [FOODON:03412612]
      host_age:
        examples:
          - value: 10 days
      host_disease_stat:
        examples:
          - value: downy mildew
        recommended: true
      host_genotype:
        examples:
          - value: Ts
      host_height:
        examples:
          - value: 1 meter
      host_phenotype:
        examples:
          - value: seed pod; green [PATO:0000320]
      host_taxid:
        examples:
          - value: '4530'
        string_serialization: '{NCBI taxid}'
      host_tot_mass:
        examples:
          - value: 2500 gram
      humidity:
        examples:
          - value: 30% relative humidity
      library_prep_kit:
        examples:
          - value: Illumina DNA Prep
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 colony forming units per milliliter;qPCR
      plant_growth_med:
        examples:
          - value: soil
      samp_collect_device:
        examples:
          - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713]
      soil_conductivity:
        description: Conductivity of soil at time of sampling.
      soil_pH:
        description: The pH of soil at time of sampling.
      soil_type:
        string_serialization: '{termLabel} [{termID}]'
      water_pH:
        description: pH measurement of the sample, or liquid portion of sample, or
          aqueous phase of the fluid.
      wind_direction:
        examples:
          - value: 0 degrees; Northwest
      wind_speed:
        examples:
          - value: 1.6 kilometers per hour
    class_uri: MIXS:0016020
    aliases:
      - MIxS-Food (farm environment)
    annotations:
      use_cases: Microbiome of farm and field crops as well as environmental samples including irrigation, soil amendments, and farm equipment.
  FoodFoodProductionFacility:
    description: >-
      A collection of terms appropriate when collecting samples and performing sequencing of samples 
      obtained from food production facilities.
    comments:
      - This extension is intended to work alongside the other food extensions
        (animals and animal feed, farm environment, and human foods)
        for capturing contextual data across the food supply-chain environment.
    title: food-food production facility
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - lat_lon
      - geo_loc_name
      - collection_date
      - seq_meth
      - samp_size
      - samp_collect_device
      - experimental_factor
      - nucl_acid_ext
      - organism_count
      - samp_store_temp
      - samp_store_dur
      - air_temp
      - room_dim
      - freq_clean
      - samp_room_id
      - samp_vol_we_dna_ext
      - pool_dna_extracts
      - samp_store_loc
      - surf_material
      - indoor_surf
      - avg_occup
      - samp_floor
      - genetic_mod
      - coll_site_geo_feat
      - samp_source_mat_cat
      - samp_type
      - samp_stor_media
      - samp_stor_device
      - food_product_type
      - IFSAC_category
      - food_product_qual
      - food_contact_surf
      - facility_type
      - food_trav_mode
      - food_trav_vehic
      - samp_transport_dur
      - samp_transport_temp
      - samp_collect_method
      - num_samp_collect
      - lot_number
      - hygienic_area
      - env_monitoring_zone
      - area_samp_size
      - samp_surf_moisture
      - samp_loc_condition
      - biocide_used
      - ster_meth_samp_room
      - enrichment_protocol
      - cult_target
      - microb_cult_med
      - timepoint
      - bacterial_density
      - cult_isol_date
      - cult_result
      - cult_result_org
      - subspecf_gen_lin
      - samp_pooling
      - samp_purpose
      - samp_rep_tech
      - samp_rep_biol
      - samp_transport_cont
      - study_design
      - nucl_acid_ext_kit
      - library_prep_kit
      - sequencing_kit
      - sequencing_location
      - study_inc_temp
      - study_inc_dur
      - study_timecourse
      - study_tmnt
      - food_source
      - food_dis_point
      - food_dis_point_city
      - food_origin
      - food_prod_synonym
      - food_additive
      - food_trace_list
      - part_plant_animal
      - food_ingredient
      - spec_intended_cons
      - HACCP_term
      - dietary_claim_use
      - food_allergen_label
      - food_prod_char
      - prod_label_claims
      - food_name_status
      - food_preserv_proc
      - food_cooking_proc
      - food_treat_proc
      - food_contain_wrap
      - food_pack_capacity
      - food_pack_medium
      - food_prior_contact
      - food_prod
      - food_quality_date
      - repository_name
      - intended_consumer
      - food_pack_integrity
      - misc_param
    slot_usage:
      air_temp:
        examples:
          - value: 4 degree Celsius
      avg_occup:
        examples:
          - value: '6'
      food_contact_surf:
        required: true
      food_pack_medium:
        examples:
          - value: vacuum-packed [FOODON:03480027]
      food_product_qual:
        required: true
      food_product_type:
        examples:
          - value: shrimp (peeled, deep-frozen) [FOODON:03317171]
        required: true
      food_source:
        examples:
          - value: giant tiger prawn [FOODON:03412612]
      library_prep_kit:
        examples:
          - value: Illumina DNA Prep
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 colony forming units per milliliter;qPCR
      pool_dna_extracts:
        string_serialization: '{boolean},{integer}'
      samp_collect_device:
        examples:
          - value: biopsy, niskin bottle, push core
      samp_collect_method:
        examples:
          - value: environmental swab sampling
      samp_source_mat_cat:
        required: true
      samp_stor_device:
        required: true
      samp_stor_media:
        required: true
    class_uri: MIXS:0016021
    aliases:
      - MIxS-Food(food production facility)
    annotations:
      use_cases: Microbiome of food production facilities/factories
  FoodHumanFoods:
    description: >-
      A collection of terms appropriate when collecting samples and performing sequencing of samples 
      obtained from human food products.
    comments:
      - This extension is intended to work alongside the other food extensions
        (animals and animal feed, farm environment, and food production facilities)
        for capturing contextual data across the food supply-chain environment.
    title: food-human foods
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - lat_lon
      - geo_loc_name
      - collection_date
      - seq_meth
      - samp_size
      - samp_collect_device
      - experimental_factor
      - nucl_acid_ext
      - organism_count
      - spikein_count
      - samp_store_temp
      - samp_store_dur
      - samp_vol_we_dna_ext
      - pool_dna_extracts
      - temp
      - samp_store_loc
      - genetic_mod
      - perturbation
      - coll_site_geo_feat
      - food_product_type
      - IFSAC_category
      - ferm_chem_add
      - ferm_chem_add_perc
      - ferm_headspace_oxy
      - ferm_medium
      - ferm_pH
      - ferm_rel_humidity
      - ferm_temp
      - ferm_time
      - ferm_vessel
      - bacterial_density
      - cons_food_stor_dur
      - cons_food_stor_temp
      - cons_purch_date
      - cons_qty_purchased
      - cult_isol_date
      - cult_result
      - cult_result_org
      - cult_target
      - dietary_claim_use
      - enrichment_protocol
      - food_additive
      - food_allergen_label
      - food_contact_surf
      - food_contain_wrap
      - food_cooking_proc
      - food_dis_point
      - food_ingredient
      - food_name_status
      - food_origin
      - food_pack_capacity
      - food_pack_integrity
      - food_pack_medium
      - food_preserv_proc
      - food_prior_contact
      - food_prod
      - food_prod_synonym
      - food_product_qual
      - food_quality_date
      - food_source
      - food_trace_list
      - food_trav_mode
      - food_trav_vehic
      - food_treat_proc
      - HACCP_term
      - intended_consumer
      - library_prep_kit
      - lot_number
      - microb_cult_med
      - microb_start
      - microb_start_count
      - microb_start_inoc
      - microb_start_prep
      - microb_start_source
      - microb_start_taxID
      - nucl_acid_ext_kit
      - num_samp_collect
      - part_plant_animal
      - repository_name
      - samp_collect_method
      - samp_pooling
      - samp_rep_biol
      - samp_rep_tech
      - samp_source_mat_cat
      - samp_stor_device
      - samp_stor_media
      - samp_transport_cont
      - samp_transport_dur
      - samp_transport_temp
      - samp_purpose
      - sequencing_kit
      - sequencing_location
      - serovar_or_serotype
      - spikein_AMR
      - spikein_antibiotic
      - spikein_growth_med
      - spikein_metal
      - spikein_org
      - spikein_serovar
      - spikein_strain
      - study_design
      - study_inc_dur
      - study_inc_temp
      - study_timecourse
      - study_tmnt
      - timepoint
      - misc_param
    slot_usage:
      food_pack_medium:
        examples:
          - value: vacuum-packed[FOODON:03480027]
      food_product_type:
        examples:
          - value: shrimp (peeled, deep-frozen) [FOODON:03317171]
        required: true
      food_source:
        examples:
          - value: giant tiger prawn [FOODON:03412612]
      library_prep_kit:
        examples:
          - value: Illumina DNA Prep
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 colony forming units per milliliter;qPCR
      pool_dna_extracts:
        string_serialization: '{boolean},{integer}'
      samp_collect_device:
        examples:
          - value: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713]
      samp_collect_method:
        examples:
          - value: environmental swab sampling
    class_uri: MIXS:0016022
    aliases:
      - MIxS-Food (human foods)
    annotations:
      use_cases: Microbiome of foods intended for human consumption.
  HostAssociated:
    description: >-
      A collection of terms appropriate when collecting samples and sequencing samples 
      obtained from a non-human host, to examine the host-associated microbiome or genome.
    comments:
      - This is a very broad package, intended to capture many kinds of sequences derived
        from the bodies of or derived from an organism. Where possible, please use a more specific package.
        For example, consider using food-animal and animal feed extension for sampling of farm animals reared for consumption.
        For human stool microbiomes, consider MIxS-human-gut.
        Incidental associations of environmental material with an organism may also be better served by other packages.
        For example, nucleic acids derived from soil that was sampled from the hoof of a cow may be better described
        by terms from the soil extension;
        however, soil embedded in a wound on a cow’s leg would be best described by terms in this extension
    title: host-associated
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - alt
      - depth
      - elev
      - ances_data
      - biol_stat
      - genetic_mod
      - host_common_name
      - samp_capt_status
      - samp_dis_stage
      - host_taxid
      - host_subject_id
      - host_age
      - host_life_stage
      - host_sex
      - host_disease_stat
      - chem_administration
      - host_body_habitat
      - host_body_site
      - host_body_product
      - host_tot_mass
      - host_height
      - host_length
      - host_diet
      - host_last_meal
      - host_growth_cond
      - host_substrate
      - host_fam_rel
      - host_subspecf_genlin
      - host_genotype
      - host_phenotype
      - host_body_temp
      - host_dry_mass
      - blood_press_diast
      - blood_press_syst
      - host_color
      - host_shape
      - gravidity
      - perturbation
      - salinity
      - oxy_stat_samp
      - temp
      - organism_count
      - samp_vol_we_dna_ext
      - samp_store_temp
      - samp_store_dur
      - samp_store_loc
      - host_symbiont
      - misc_param
    slot_usage:
      alt:
        recommended: true
      depth:
        examples:
          - value: 10 meter
        recommended: true
      elev:
        recommended: true
      host_age:
        examples:
          - value: 10 days
      host_body_habitat:
        examples:
          - value: nasopharynx
      host_body_site:
        examples:
          - value: gill [UBERON:0002535]
      host_body_temp:
        examples:
          - value: 15 degree Celsius
      host_common_name:
        examples:
          - value: human
      host_diet:
        examples:
          - value: herbivore
      host_disease_stat:
        examples:
          - value: rabies [DOID:11260]
      host_fam_rel:
        examples:
          - value: offspring;Mussel25
      host_genotype:
        examples:
          - value: C57BL/6
      host_height:
        examples:
          - value: 0.1 meter
      host_last_meal:
        examples:
          - value: corn feed;P2H
      host_life_stage:
        examples:
          - value: adult
      host_phenotype:
        examples:
          - value: elongated [PATO:0001154]
      host_subject_id:
        examples:
          - value: MPI123
      host_symbiont:
        examples:
          - value: flukeworms
      host_taxid:
        examples:
          - value: '7955'
        string_serialization: '{NCBI taxid}'
      host_tot_mass:
        examples:
          - value: 2500 gram
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 cells per milliliter;qPCR
    class_uri: MIXS:0016002
    aliases:
      - MIxS-host-associated
    annotations:
      use_cases: elephant fecal matter or cat oral cavity
  HumanAssociated:
    description: >-
      A collection of terms appropriate when collecting samples and sequencing samples 
      obtained from a person to examine their human-associated microbiome or genome, 
      that does not have a specific extension (e.g., skin, gut, vaginal).
    comments:
      - For stool samples use MIxS-human-gut extension.
    title: human-associated
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - host_subject_id
      - host_age
      - host_sex
      - host_disease_stat
      - ihmc_medication_code
      - chem_administration
      - host_body_site
      - host_body_product
      - host_tot_mass
      - host_height
      - host_diet
      - host_last_meal
      - host_fam_rel
      - host_genotype
      - host_phenotype
      - host_body_temp
      - smoker
      - host_hiv_stat
      - drug_usage
      - host_body_mass_index
      - diet_last_six_month
      - weight_loss_3_month
      - ethnicity
      - host_occupation
      - pet_farm_animal
      - travel_out_six_month
      - twin_sibling
      - medic_hist_perform
      - study_complt_stat
      - pulmonary_disord
      - nose_throat_disord
      - blood_blood_disord
      - host_pulse
      - gestation_state
      - maternal_health_stat
      - foetal_health_stat
      - amniotic_fluid_color
      - kidney_disord
      - urogenit_tract_disor
      - urine_collect_meth
      - perturbation
      - salinity
      - oxy_stat_samp
      - temp
      - organism_count
      - samp_vol_we_dna_ext
      - samp_store_temp
      - samp_store_dur
      - host_symbiont
      - samp_store_loc
      - misc_param
    slot_usage:
      host_age:
        examples:
          - value: 30 years
      host_body_site:
        examples:
          - value: Lung parenchyma [fma27360]
      host_body_temp:
        examples:
          - value: 36.5 degree Celsius
      host_diet:
        examples:
          - value: high-fat
      host_disease_stat:
        examples:
          - value: measles [DOID:8622]
      host_fam_rel:
        examples:
          - value: mother;ID298
      host_genotype:
        examples:
          - value: ST1
      host_height:
        examples:
          - value: 1.75 meter
      host_last_meal:
        examples:
          - value: french fries;P5H30M
      host_phenotype:
        examples:
          - value: Tinnitus [HP:0000360]
      host_subject_id:
        examples:
          - value: MPI123
      host_symbiont:
        examples:
          - value: flukeworms
      host_tot_mass:
        examples:
          - value: 65 kilogram
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 cells per milliliter;qPCR
    class_uri: MIXS:0016003
    aliases:
      - MIxS-human-associated
    annotations:
      use_cases: blood samples or biopsy samples.
  HumanGut:
    description: >-
      A collection of terms appropriate when collecting samples and sequencing samples 
      obtained from a person to examine their gut-associated microbiome.
    title: human-gut
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - gastrointest_disord
      - liver_disord
      - special_diet
      - host_subject_id
      - host_age
      - host_sex
      - host_disease_stat
      - ihmc_medication_code
      - chem_administration
      - host_body_site
      - host_body_product
      - host_tot_mass
      - host_height
      - host_diet
      - host_last_meal
      - host_fam_rel
      - host_genotype
      - host_phenotype
      - host_body_temp
      - host_body_mass_index
      - ethnicity
      - host_occupation
      - medic_hist_perform
      - host_pulse
      - perturbation
      - salinity
      - oxy_stat_samp
      - temp
      - organism_count
      - samp_store_temp
      - samp_vol_we_dna_ext
      - samp_store_dur
      - host_symbiont
      - samp_store_loc
      - misc_param
    slot_usage:
      host_age:
        examples:
          - value: 30 years
      host_body_site:
        examples:
          - value: Wall of gut [fma45653]
      host_body_temp:
        examples:
          - value: 36.5 degree Celsius
      host_diet:
        examples:
          - value: high-fat
      host_disease_stat:
        examples:
          - value: measles [DOID:8622]
      host_fam_rel:
        examples:
          - value: mother;ID298
      host_genotype:
        examples:
          - value: ST1
      host_height:
        examples:
          - value: 1.75 meter
      host_last_meal:
        examples:
          - value: french fries;P5H30M
      host_phenotype:
        examples:
          - value: Tinnitus [HP:0000360]
      host_subject_id:
        examples:
          - value: MPI123
      host_symbiont:
        examples:
          - value: flukeworms
      host_tot_mass:
        examples:
          - value: 65 kilogram
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 cells per milliliter;qPCR
    class_uri: MIXS:0016004
    aliases:
      - MIxS-human-gut
    annotations:
      use_cases: human stool or fecal samples, or samples collected directly from the gut.
  HumanOral:
    description: >-
      A collection of terms appropriate when collecting samples and sequencing samples 
      obtained from a person to examine their oral-associated microbiome.
    title: human-oral
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - nose_mouth_teeth_throat_disord
      - time_last_toothbrush
      - host_subject_id
      - host_age
      - host_sex
      - host_disease_stat
      - ihmc_medication_code
      - chem_administration
      - host_body_site
      - host_body_product
      - host_tot_mass
      - host_height
      - host_diet
      - host_last_meal
      - host_fam_rel
      - host_genotype
      - host_phenotype
      - host_body_temp
      - host_body_mass_index
      - ethnicity
      - host_occupation
      - medic_hist_perform
      - host_pulse
      - perturbation
      - salinity
      - oxy_stat_samp
      - temp
      - organism_count
      - samp_vol_we_dna_ext
      - samp_store_temp
      - samp_store_dur
      - host_symbiont
      - samp_store_loc
      - misc_param
    slot_usage:
      host_age:
        examples:
          - value: 30 years
      host_body_site:
        examples:
          - value: Epithelium of tongue [fma284658]
      host_body_temp:
        examples:
          - value: 36.5 degree Celsius
      host_diet:
        examples:
          - value: high-fat
      host_disease_stat:
        examples:
          - value: measles [DOID:8622]
      host_fam_rel:
        examples:
          - value: mother;ID298
      host_genotype:
        examples:
          - value: ST1
      host_height:
        examples:
          - value: 1.75 meter
      host_last_meal:
        examples:
          - value: french fries;P5H30M
      host_phenotype:
        examples:
          - value: Tinnitus [HP:0000360]
      host_subject_id:
        examples:
          - value: MPI123
      host_symbiont:
        examples:
          - value: flukeworms
      host_tot_mass:
        examples:
          - value: 65 kilogram
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 cells per milliliter;qPCR
    class_uri: MIXS:0016005
    aliases:
      - MIxS-human-oral

    annotations:
      use_cases: mouth swab sampling, dental microbiome samples, microbiome of oral swabs, nasal, mouth, throat, teeth, tongue microbiome studies
  HumanSkin:
    description: >-
      A collection of terms appropriate when collecting samples and sequencing samples 
      obtained from a person to examine their skin-associated microbiome.
    title: human-skin
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - dermatology_disord
      - time_since_last_wash
      - dominant_hand
      - host_subject_id
      - host_age
      - host_sex
      - host_disease_stat
      - ihmc_medication_code
      - chem_administration
      - host_body_site
      - host_body_product
      - host_tot_mass
      - host_height
      - host_diet
      - host_last_meal
      - host_fam_rel
      - host_genotype
      - host_phenotype
      - host_body_temp
      - host_body_mass_index
      - ethnicity
      - host_occupation
      - medic_hist_perform
      - host_pulse
      - perturbation
      - salinity
      - oxy_stat_samp
      - temp
      - organism_count
      - samp_vol_we_dna_ext
      - samp_store_temp
      - samp_store_dur
      - samp_store_loc
      - host_symbiont
      - misc_param
    slot_usage:
      host_age:
        examples:
          - value: 30 years
      host_body_site:
        examples:
          - value: Skin of palm of left hand [fma38303]
      host_body_temp:
        examples:
          - value: 36.5 degree Celsius
      host_diet:
        examples:
          - value: high-fat
      host_disease_stat:
        examples:
          - value: measles [DOID:8622]
      host_fam_rel:
        examples:
          - value: mother;ID298
      host_genotype:
        examples:
          - value: ST1
      host_height:
        examples:
          - value: 1.75 meter
      host_last_meal:
        examples:
          - value: french fries;P5H30M
      host_phenotype:
        examples:
          - value: Tinnitus [HP:0000360]
      host_subject_id:
        examples:
          - value: MPI123
      host_symbiont:
        examples:
          - value: flukeworms
      host_tot_mass:
        examples:
          - value: 65 kilogram
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 cells per milliliter;qPCR
    class_uri: MIXS:0016006
    aliases:
      - MIxS-human-skin
    annotations:
      use_cases: swab samples taken on a person’s skin surface.
  HumanVaginal:
    description: >-
      A collection of terms appropriate when collecting samples and sequencing samples 
      obtained from a person to examine their vaginal-associated microbiome.
    title: human-vaginal
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - menarche
      - sexual_act
      - pregnancy
      - douche
      - birth_control
      - menopause
      - hrt
      - hysterectomy
      - gynecologic_disord
      - urogenit_disord
      - host_subject_id
      - host_age
      - host_sex
      - host_disease_stat
      - ihmc_medication_code
      - chem_administration
      - host_body_site
      - host_body_product
      - host_tot_mass
      - host_height
      - host_diet
      - host_last_meal
      - host_fam_rel
      - host_genotype
      - host_phenotype
      - host_body_temp
      - host_body_mass_index
      - ethnicity
      - host_occupation
      - medic_hist_perform
      - host_pulse
      - perturbation
      - salinity
      - oxy_stat_samp
      - temp
      - organism_count
      - samp_vol_we_dna_ext
      - samp_store_temp
      - samp_store_loc
      - samp_store_dur
      - host_symbiont
      - misc_param
    slot_usage:
      host_age:
        examples:
          - value: 30 years
      host_body_site:
        examples:
          - value: Ectocervix [fma86484]
      host_body_temp:
        examples:
          - value: 36.5 degree Celsius
      host_diet:
        examples:
          - value: high-fat
      host_disease_stat:
        examples:
          - value: measles [DOID:8622]
      host_fam_rel:
        examples:
          - value: mother;ID298
      host_genotype:
        examples:
          - value: ST1
      host_height:
        examples:
          - value: 1.75 meter
      host_last_meal:
        examples:
          - value: french fries;P5H30M
      host_phenotype:
        examples:
          - value: Tinnitus [HP:0000360]
      host_subject_id:
        examples:
          - value: MPI123
      host_symbiont:
        examples:
          - value: flukeworms
      host_tot_mass:
        examples:
          - value: 65 kilogram
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 cells per milliliter;qPCR
    class_uri: MIXS:0016007
    aliases:
      - MIxS-human-vaginal
    annotations:
      use_cases: vaginal swabbing
  HydrocarbonResourcesCores:
    description: >-
      A collection of terms appropriate when collecting samples and sequencing samples 
      obtained from environments pertaining to hydrocarbon resources, specifically core samples.
    title: hydrocarbon resources-cores
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - hcr
      - hc_produced
      - basin
      - field
      - reservoir
      - hcr_temp
      - tvdss_of_hcr_temp
      - hcr_pressure
      - tvdss_of_hcr_press
      - permeability
      - porosity
      - lithology
      - depos_env
      - hcr_geol_age
      - owc_tvdss
      - hcr_fw_salinity
      - sulfate_fw
      - vfa_fw
      - sr_kerog_type
      - sr_lithology
      - sr_dep_env
      - sr_geol_age
      - samp_well_name
      - win
      - samp_type
      - samp_subtype
      - temp
      - pressure
      - samp_tvdss
      - samp_md
      - elev
      - oxy_stat_samp
      - samp_transport_cond
      - samp_store_temp
      - samp_store_dur
      - samp_store_loc
      - samp_vol_we_dna_ext
      - organism_count
      - org_count_qpcr_info
      - ph
      - salinity
      - alkalinity
      - alkalinity_method
      - sulfate
      - sulfide
      - tot_sulfur
      - nitrate
      - nitrite
      - ammonium
      - tot_nitro
      - diss_iron
      - sodium
      - chloride
      - potassium
      - magnesium
      - calcium
      - tot_iron
      - diss_org_carb
      - diss_inorg_carb
      - diss_inorg_phosp
      - tot_phosp
      - suspend_solids
      - density
      - diss_carb_dioxide
      - diss_oxygen_fluid
      - vfa
      - benzene
      - toluene
      - ethylbenzene
      - xylene
      - api
      - tan
      - viscosity
      - pour_point
      - saturates_pc
      - aromatics_pc
      - resins_pc
      - asphaltenes_pc
      - misc_param
      - additional_info
    slot_usage:
      ammonium:
        recommended: true
      depos_env:
        examples:
          - value: Continental - Alluvial
      diss_inorg_phosp:
        recommended: true
      hcr_temp:
        required: true
      nitrate:
        recommended: true
      nitrite:
        recommended: true
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 cells per milliliter;qPCR
        recommended: true
      ph:
        recommended: true
      samp_vol_we_dna_ext:
        recommended: true
      sulfate:
        recommended: true
      sulfate_fw:
        required: true
      sulfide:
        recommended: true
      temp:
        required: true
      vfa_fw:
        required: true
    class_uri: MIXS:0016015
    aliases:
      - MIxS-HCR (hydrocarbon resources-cores)
    annotations:
      use_cases: The microbial characterization of hydrocarbon occurrences, defined as the natural and artificial environmental features that are rich in hydrocarbons, from hydrocarbon rich formations, such as reservoir cores.
  HydrocarbonResourcesFluidsSwabs:
    description: >-
      A collection of terms appropriate when collecting samples and sequencing samples 
      obtained from environments pertaining to hydrocarbon resources, specifically run-off liquids samples and swabs.
    title: hydrocarbon resources-fluids/swabs
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - hcr
      - hc_produced
      - basin
      - field
      - reservoir
      - hcr_temp
      - tvdss_of_hcr_temp
      - hcr_pressure
      - tvdss_of_hcr_press
      - lithology
      - depos_env
      - hcr_geol_age
      - hcr_fw_salinity
      - sulfate_fw
      - vfa_fw
      - prod_start_date
      - prod_rate
      - water_prod_rate
      - water_cut
      - iwf
      - add_recov_method
      - iw_bt_date_well
      - biocide
      - biocide_admin_method
      - chem_treatment
      - chem_treat_method
      - samp_loc_corr_rate
      - samp_well_name
      - win
      - samp_type
      - samp_subtype
      - samp_collect_point
      - temp
      - pressure
      - oxy_stat_samp
      - samp_preserv
      - samp_transport_cond
      - samp_store_temp
      - samp_store_dur
      - samp_store_loc
      - samp_vol_we_dna_ext
      - organism_count
      - org_count_qpcr_info
      - ph
      - salinity
      - alkalinity
      - alkalinity_method
      - sulfate
      - sulfide
      - tot_sulfur
      - nitrate
      - nitrite
      - ammonium
      - tot_nitro
      - diss_iron
      - sodium
      - chloride
      - potassium
      - magnesium
      - calcium
      - tot_iron
      - diss_org_carb
      - diss_inorg_carb
      - diss_inorg_phosp
      - tot_phosp
      - suspend_solids
      - density
      - diss_carb_dioxide
      - diss_oxygen_fluid
      - vfa
      - benzene
      - toluene
      - ethylbenzene
      - xylene
      - api
      - tan
      - viscosity
      - pour_point
      - saturates_pc
      - aromatics_pc
      - resins_pc
      - asphaltenes_pc
      - misc_param
      - additional_info
    slot_usage:
      ammonium:
        recommended: true
      depos_env:
        examples:
          - value: Marine - Reef
      diss_inorg_phosp:
        recommended: true
      hcr_temp:
        recommended: true
      nitrate:
        required: true
      nitrite:
        recommended: true
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 cells per milliliter;qPCR
        recommended: true
      ph:
        recommended: true
      samp_vol_we_dna_ext:
        recommended: true
      sulfate:
        required: true
      sulfate_fw:
        recommended: true
      sulfide:
        required: true
      temp:
        required: true
      vfa_fw:
        recommended: true
    class_uri: MIXS:0016016
    aliases:
      - MIxS-HCR (hydrocarbon resources-fluids/swabs)
    annotations:
      use_cases: The microbial characterization of hydrocarbon occurrences,  defined as the natural and artificial environmental features that are rich in hydrocarbons, from hydrocarbon resource fluids.
  MicrobialMatBiofilm:
    description: >-
      A collection of terms appropriate when collecting samples and sequencing samples 
      obtained from biofilm environments including microbial mats.
    title: microbial mat/biofilm
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - depth
      - elev
      - alkalinity
      - alkyl_diethers
      - aminopept_act
      - ammonium
      - bacteria_carb_prod
      - biomass
      - bishomohopanol
      - bromide
      - calcium
      - carb_nitro_ratio
      - chem_administration
      - chloride
      - chlorophyll
      - diether_lipids
      - diss_carb_dioxide
      - diss_hydrogen
      - diss_inorg_carb
      - diss_org_carb
      - diss_org_nitro
      - diss_oxygen
      - glucosidase_act
      - magnesium
      - mean_frict_vel
      - mean_peak_frict_vel
      - methane
      - misc_param
      - n_alkanes
      - nitrate
      - nitrite
      - nitro
      - org_carb
      - org_matter
      - org_nitro
      - organism_count
      - oxy_stat_samp
      - ph
      - part_org_carb
      - perturbation
      - petroleum_hydrocarb
      - phaeopigments
      - phosphate
      - phosplipid_fatt_acid
      - potassium
      - pressure
      - redox_potential
      - salinity
      - samp_store_dur
      - samp_store_loc
      - samp_store_temp
      - samp_vol_we_dna_ext
      - silicate
      - sodium
      - sulfate
      - sulfide
      - temp
      - tot_carb
      - tot_nitro_content
      - tot_org_carb
      - turbidity
      - water_content
    slot_usage:
      depth:
        examples:
          - value: 10 meter
        recommended: true
      elev:
        recommended: true
      methane:
        examples:
          - value: 0.15 micromole per liter
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 cells per milliliter;qPCR
      water_content:
        string_serialization: '{float} {unit}'
    class_uri: MIXS:0016008
    aliases:
      - MIxS-microbial mat/biofilm
    annotations:
      use_cases: samples from microbial mats at cold seeps
  MiscellaneousNaturalOrArtificialEnvironment:
    description: >-
      A collection of generic terms appropriate when collecting and sequencing samples 
      obtained from environments, where there is no specific extension already available.
    title: miscellaneous natural or artificial environment
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - alt
      - depth
      - elev
      - alkalinity
      - ammonium
      - biomass
      - bromide
      - calcium
      - chem_administration
      - chloride
      - chlorophyll
      - density
      - diether_lipids
      - diss_carb_dioxide
      - diss_hydrogen
      - diss_inorg_carb
      - diss_org_nitro
      - diss_oxygen
      - misc_param
      - nitrate
      - nitrite
      - nitro
      - org_carb
      - org_matter
      - org_nitro
      - organism_count
      - oxy_stat_samp
      - ph
      - perturbation
      - phosphate
      - phosplipid_fatt_acid
      - potassium
      - pressure
      - salinity
      - samp_store_dur
      - samp_store_loc
      - samp_store_temp
      - samp_vol_we_dna_ext
      - silicate
      - sodium
      - sulfate
      - sulfide
      - temp
      - water_current
    slot_usage:
      alt:
        recommended: true
      depth:
        examples:
          - value: 10 meter
        recommended: true
      elev:
        recommended: true
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 cells per milliliter;qPCR
    class_uri: MIXS:0016009
    aliases:
      - MIxS-miscellaneous natural or artificial environment
  PlantAssociated:
    description: >-
      A collection of terms appropriate when collecting samples and sequencing samples 
      obtained from a plant to examine it’s plant-associated microbiome.
    title: plant-associated
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - depth
      - elev
      - air_temp_regm
      - ances_data
      - antibiotic_regm
      - biol_stat
      - biotic_regm
      - chem_administration
      - chem_mutagen
      - climate_environment
      - cult_root_med
      - fertilizer_regm
      - fungicide_regm
      - gaseous_environment
      - genetic_mod
      - gravity
      - growth_facil
      - growth_habit
      - growth_hormone_regm
      - herbicide_regm
      - host_age
      - host_common_name
      - host_disease_stat
      - host_dry_mass
      - host_genotype
      - host_height
      - host_subspecf_genlin
      - host_length
      - host_life_stage
      - host_phenotype
      - host_taxid
      - host_tot_mass
      - host_wet_mass
      - humidity_regm
      - light_regm
      - mechanical_damage
      - mineral_nutr_regm
      - misc_param
      - non_min_nutr_regm
      - organism_count
      - oxy_stat_samp
      - ph_regm
      - perturbation
      - pesticide_regm
      - plant_growth_med
      - plant_product
      - plant_sex
      - plant_struc
      - radiation_regm
      - rainfall_regm
      - root_cond
      - root_med_carbon
      - root_med_macronutr
      - root_med_micronutr
      - root_med_suppl
      - root_med_ph
      - root_med_regl
      - root_med_solid
      - salt_regm
      - samp_capt_status
      - samp_dis_stage
      - salinity
      - samp_store_dur
      - samp_store_loc
      - samp_store_temp
      - samp_vol_we_dna_ext
      - season_environment
      - standing_water_regm
      - temp
      - tiss_cult_growth_med
      - water_temp_regm
      - watering_regm
      - host_symbiont
    slot_usage:
      climate_environment:
        string_serialization: '{text};{Rn/start_time/end_time/duration}'
      depth:
        examples:
          - value: 10 meter
        recommended: true
      elev:
        recommended: true
      fungicide_regm:
        string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
      gaseous_environment:
        string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
      herbicide_regm:
        string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
      host_age:
        examples:
          - value: 10 days
      host_common_name:
        examples:
          - value: rice
      host_disease_stat:
        examples:
          - value: downy mildew
      host_genotype:
        examples:
          - value: Ts
      host_height:
        examples:
          - value: 1 meter
      host_life_stage:
        examples:
          - value: adult
      host_phenotype:
        examples:
          - value: seed pod; green [PATO:0000320]
      host_symbiont:
        examples:
          - value: flukeworms
      host_taxid:
        examples:
          - value: '4530'
        string_serialization: '{NCBI taxid}'
      host_tot_mass:
        examples:
          - value: 2500 gram
      non_min_nutr_regm:
        string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 cells per milliliter;qPCR
      pesticide_regm:
        string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
      ph_regm:
        string_serialization: '{float};{Rn/start_time/end_time/duration}'
      plant_growth_med:
        examples:
          - value: hydroponic plant culture media [EO:0007067]
      salt_regm:
        string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
      season_environment:
        string_serialization: '{text};{Rn/start_time/end_time/duration}'
      standing_water_regm:
        string_serialization: '{text};{Rn/start_time/end_time/duration}'
      water_temp_regm:
        string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}'
      watering_regm:
        string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}'
    class_uri: MIXS:0016010
    aliases:
      - MIxS-plant-associated
    annotations:
      use_cases: plant surface swabs, root soil or rhizosphere, cultivated plants, plant phenotyping
  Sediment:
    description: >-
      A collection of terms appropriate when collecting samples and sequencing samples 
      obtained from the sedimentary area of aquatic environments.
    comments:
      - Sedimentary layers in terrestrial environments will probably be better served by the soil extension.
    title: sediment
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - depth
      - elev
      - alkalinity
      - alkyl_diethers
      - aminopept_act
      - ammonium
      - bacteria_carb_prod
      - biomass
      - bishomohopanol
      - bromide
      - calcium
      - carb_nitro_ratio
      - chem_administration
      - chloride
      - chlorophyll
      - density
      - diether_lipids
      - diss_carb_dioxide
      - diss_hydrogen
      - diss_inorg_carb
      - diss_org_carb
      - diss_org_nitro
      - diss_oxygen
      - glucosidase_act
      - magnesium
      - mean_frict_vel
      - mean_peak_frict_vel
      - methane
      - misc_param
      - n_alkanes
      - nitrate
      - nitrite
      - nitro
      - org_carb
      - org_matter
      - org_nitro
      - organism_count
      - oxy_stat_samp
      - ph
      - particle_class
      - part_org_carb
      - perturbation
      - petroleum_hydrocarb
      - phaeopigments
      - phosphate
      - phosplipid_fatt_acid
      - porosity
      - potassium
      - pressure
      - redox_potential
      - salinity
      - samp_store_dur
      - samp_store_loc
      - samp_store_temp
      - samp_vol_we_dna_ext
      - sediment_type
      - silicate
      - sodium
      - sulfate
      - sulfide
      - temp
      - tidal_stage
      - tot_carb
      - tot_depth_water_col
      - tot_nitro_content
      - tot_org_carb
      - turbidity
      - water_content
    slot_usage:
      depth:
        examples:
          - value: 10 meter
        required: true
      elev:
        recommended: true
      methane:
        examples:
          - value: 0.15 micromole per liter
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 cells per milliliter;qPCR
      water_content:
        string_serialization: '{float} {unit}'
    class_uri: MIXS:0016011
    aliases:
      - MIxS-sediment
    annotations:
      use_cases: river bed or sea floor.
  Soil:
    description: >-
      A collection of terms appropriate when collecting samples and sequencing samples 
      obtained from the uppermost layer of Earth's crust, contributed by the Terragenome Consortium.
    see_also:
      - https://www.fao.org/agriculture/crops/thematic-sitemap/theme/spi/soil-biodiversity/research-into-soil-biodiversity/the-terragenome-project/en/
    title: soil
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - depth
      - elev
      - cur_land_use
      - cur_vegetation
      - cur_vegetation_meth
      - previous_land_use
      - prev_land_use_meth
      - crop_rotation
      - agrochem_addition
      - tillage
      - fire
      - flooding
      - extreme_event
      - soil_horizon
      - horizon_meth
      - sieving
      - water_content
      - water_cont_soil_meth
      - samp_vol_we_dna_ext
      - pool_dna_extracts
      - store_cond
      - link_climate_info
      - annual_temp
      - season_temp
      - annual_precpt
      - season_precpt
      - link_class_info
      - fao_class
      - local_class
      - local_class_meth
      - org_nitro
      - temp
      - soil_type
      - soil_type_meth
      - slope_gradient
      - slope_aspect
      - profile_position
      - drainage_class
      - soil_texture
      - soil_texture_meth
      - ph
      - ph_meth
      - org_matter
      - tot_org_carb
      - tot_org_c_meth
      - tot_nitro_content
      - tot_nitro_cont_meth
      - microbial_biomass
      - micro_biomass_meth
      - link_addit_analys
      - heavy_metals
      - heavy_metals_meth
      - al_sat
      - al_sat_meth
      - misc_param
    slot_usage:
      crop_rotation:
        string_serialization: '{boolean};{Rn/start_time/end_time/duration}'
      depth:
        examples:
          - value: 10 meter
        required: true
      elev:
        required: true
      heavy_metals_meth:
        string_serialization: '{PMID}|{DOI}|{URL}'
      pool_dna_extracts:
        string_serialization: '{boolean};{integer}'
      soil_type:
        string_serialization: '{termLabel} [{termID}]'
      water_content:
        string_serialization: '{float}'
    class_uri: MIXS:0016012
    aliases:
      - MIxS-soil
    annotations:
      use_cases: soil collection, island microbiome sampling, farm land or forest floor.
  SymbiontAssociated:
    description: >-
      A collection of terms appropriate when collecting samples and sequencing samples 
      obtained from an organism that lives in close association with any other organism(s).
    title: symbiont-associated
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - lat_lon
      - geo_loc_name
      - collection_date
      - alt
      - depth
      - elev
      - host_subject_id
      - host_common_name
      - host_taxid
      - source_mat_id
      - host_dependence
      - type_of_symbiosis
      - sym_life_cycle_type
      - host_life_stage
      - host_age
      - urobiom_sex
      - mode_transmission
      - route_transmission
      - host_body_habitat
      - host_body_site
      - host_body_product
      - host_tot_mass
      - host_height
      - host_length
      - host_growth_cond
      - host_substrate
      - host_fam_rel
      - host_infra_spec_name
      - host_infra_spec_rank
      - host_genotype
      - host_phenotype
      - host_dry_mass
      - host_color
      - host_shape
      - gravidity
      - host_number
      - host_symbiont
      - host_specificity
      - symbiont_host_role
      - host_cellular_loc
      - association_duration
      - host_of_host_coinf
      - host_of_host_name
      - host_of_host_env_loc
      - host_of_host_env_med
      - host_of_host_taxid
      - host_of_host_sub_id
      - host_of_host_disease
      - host_of_host_fam_rel
      - host_of_host_infname
      - host_of_host_infrank
      - host_of_host_geno
      - host_of_host_pheno
      - host_of_host_gravid
      - host_of_host_totmass
      - chem_administration
      - perturbation
      - salinity
      - oxy_stat_samp
      - temp
      - organism_count
      - samp_vol_we_dna_ext
      - samp_store_temp
      - samp_store_dur
      - samp_store_loc
      - samp_store_sol
      - misc_param
    slot_usage:
      alt:
        recommended: true
      depth:
        examples:
          - value: 10 meter
        recommended: true
      elev:
        recommended: true
      host_body_habitat:
        examples:
          - value: anterior end of a tapeworm
      host_body_site:
        examples:
          - value: scolex [UBERON:0015119]
      host_common_name:
        examples:
          - value: trematode
      host_fam_rel:
        examples:
          - value: clone;P15
      host_life_stage:
        examples:
          - value: redia
        required: true
      host_phenotype:
        examples:
          - value: soldier
      host_subject_id:
        examples:
          - value: P14
      host_symbiont:
        examples:
          - value: Paragordius varius
      host_taxid:
        examples:
          - value: '395013'
        string_serialization: '{integer}'
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 cells per milliliter;qPCR
    class_uri: MIXS:0016023
    aliases:
      - MIxS-SA (symbiont-associated)
    annotations:
      use_cases: the microbiome sequence of a flea sampled from a farm animal
  WastewaterSludge:
    description: >-
      A collection of terms appropriate when collecting samples and sequencing samples 
      obtained from any solid, semisolid or liquid waste.
    title: wastewater/sludge
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - depth
      - alkalinity
      - biochem_oxygen_dem
      - chem_administration
      - chem_oxygen_dem
      - efficiency_percent
      - emulsions
      - gaseous_substances
      - indust_eff_percent
      - inorg_particles
      - misc_param
      - nitrate
      - org_particles
      - organism_count
      - oxy_stat_samp
      - ph
      - perturbation
      - phosphate
      - pre_treatment
      - primary_treatment
      - reactor_type
      - salinity
      - samp_store_dur
      - samp_store_loc
      - samp_store_temp
      - samp_vol_we_dna_ext
      - secondary_treatment
      - sewage_type
      - sludge_retent_time
      - sodium
      - soluble_inorg_mat
      - soluble_org_mat
      - suspend_solids
      - temp
      - tertiary_treatment
      - tot_nitro
      - tot_phosphate
      - wastewater_type
    slot_usage:
      depth:
        examples:
          - value: 10 meter
        recommended: true
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 cells per milliliter;qPCR
    class_uri: MIXS:0016013
    aliases:
      - MIxS-wastewater/sludge
    annotations:
      use_cases: sewerage or industrial wastewater
  Water:
    description: >-
      A collection of terms appropriate when collecting samples and sequencing water samples 
      obtained from any aquatic environment.
    title: water
    is_a: Extension
    slots:
      - samp_name
      - project_name
      - depth
      - elev
      - alkalinity
      - alkalinity_method
      - alkyl_diethers
      - aminopept_act
      - ammonium
      - atmospheric_data
      - bacteria_carb_prod
      - bac_prod
      - bac_resp
      - biomass
      - bishomohopanol
      - bromide
      - calcium
      - carb_nitro_ratio
      - chem_administration
      - chloride
      - chlorophyll
      - conduc
      - density
      - diether_lipids
      - diss_carb_dioxide
      - diss_hydrogen
      - diss_inorg_carb
      - diss_inorg_nitro
      - diss_inorg_phosp
      - diss_org_carb
      - diss_org_nitro
      - diss_oxygen
      - down_par
      - fluor
      - glucosidase_act
      - light_intensity
      - magnesium
      - mean_frict_vel
      - mean_peak_frict_vel
      - misc_param
      - n_alkanes
      - nitrate
      - nitrite
      - nitro
      - org_carb
      - org_matter
      - org_nitro
      - organism_count
      - oxy_stat_samp
      - ph
      - part_org_carb
      - part_org_nitro
      - perturbation
      - petroleum_hydrocarb
      - phaeopigments
      - phosphate
      - phosplipid_fatt_acid
      - photon_flux
      - potassium
      - pressure
      - primary_prod
      - redox_potential
      - salinity
      - samp_store_dur
      - samp_store_loc
      - samp_store_temp
      - samp_vol_we_dna_ext
      - silicate
      - size_frac_low
      - size_frac_up
      - sodium
      - soluble_react_phosp
      - sulfate
      - sulfide
      - suspend_part_matter
      - temp
      - tidal_stage
      - tot_depth_water_col
      - tot_diss_nitro
      - tot_inorg_nitro
      - tot_nitro
      - tot_part_carb
      - tot_phosp
      - turbidity
      - water_current
    slot_usage:
      depth:
        examples:
          - value: 10 meter
        required: true
      elev:
        recommended: true
      organism_count:
        examples:
          - value: total prokaryotes;3.5e7 cells per milliliter;qPCR
    class_uri: MIXS:0016014
    aliases:
      - MIxS-water
    annotations:
      use_cases: sea or river water, global ocean sampling day
    see_also:
      - https://www.vliz.be/projects/assembleplus/research/ocean-sampling-day-2018.html
  Checklist:
    description: A collection of metadata terms (slots) to minimally describe the
      sampling and sequencing method of a specimen used to generate a nucleotide sequence.
  Extension:
    description: A collection of recommended metadata terms (slots) developed by community
      experts, describing the specific context under which a sample was collected.
    aliases:
      - EnvironmentalPackage
  MixsCompliantData:
    description: A collection of Data that comply with some combination of a MIxS
      checklist and environmental extension
    title: MIxS compliant data
    slots:
      - migs_ba_data
      - agriculture_data
      - migs_ba_agriculture_data
      - air_data
      - migs_ba_air_data
      - built_environment_data
      - migs_ba_built_environment_data
      - food_animal_and_animal_feed_data
      - migs_ba_food_animal_and_animal_feed_data
      - food_farm_environment_data
      - migs_ba_food_farm_environment_data
      - food_food_production_facility_data
      - migs_ba_food_food_production_facility_data
      - food_human_foods_data
      - migs_ba_food_human_foods_data
      - host_associated_data
      - migs_ba_host_associated_data
      - human_associated_data
      - migs_ba_human_associated_data
      - human_gut_data
      - migs_ba_human_gut_data
      - human_oral_data
      - migs_ba_human_oral_data
      - human_skin_data
      - migs_ba_human_skin_data
      - human_vaginal_data
      - migs_ba_human_vaginal_data
      - hydrocarbon_resources_cores_data
      - migs_ba_hydrocarbon_resources_cores_data
      - hydrocarbon_resources_fluids_swabs_data
      - migs_ba_hydrocarbon_resources_fluids_swabs_data
      - microbial_mat_biofilm_data
      - migs_ba_microbial_mat_biofilm_data
      - miscellaneous_natural_or_artificial_environment_data
      - migs_ba_miscellaneous_natural_or_artificial_environment_data
      - plant_associated_data
      - migs_ba_plant_associated_data
      - sediment_data
      - migs_ba_sediment_data
      - soil_data
      - migs_ba_soil_data
      - symbiont_associated_data
      - migs_ba_symbiont_associated_data
      - wastewater_sludge_data
      - migs_ba_wastewater_sludge_data
      - water_data
      - migs_ba_water_data
      - migs_eu_data
      - migs_eu_agriculture_data
      - migs_eu_air_data
      - migs_eu_built_environment_data
      - migs_eu_food_animal_and_animal_feed_data
      - migs_eu_food_farm_environment_data
      - migs_eu_food_food_production_facility_data
      - migs_eu_food_human_foods_data
      - migs_eu_host_associated_data
      - migs_eu_human_associated_data
      - migs_eu_human_gut_data
      - migs_eu_human_oral_data
      - migs_eu_human_skin_data
      - migs_eu_human_vaginal_data
      - migs_eu_hydrocarbon_resources_cores_data
      - migs_eu_hydrocarbon_resources_fluids_swabs_data
      - migs_eu_microbial_mat_biofilm_data
      - migs_eu_miscellaneous_natural_or_artificial_environment_data
      - migs_eu_plant_associated_data
      - migs_eu_sediment_data
      - migs_eu_soil_data
      - migs_eu_symbiont_associated_data
      - migs_eu_wastewater_sludge_data
      - migs_eu_water_data
      - migs_org_data
      - migs_org_agriculture_data
      - migs_org_air_data
      - migs_org_built_environment_data
      - migs_org_food_animal_and_animal_feed_data
      - migs_org_food_farm_environment_data
      - migs_org_food_food_production_facility_data
      - migs_org_food_human_foods_data
      - migs_org_host_associated_data
      - migs_org_human_associated_data
      - migs_org_human_gut_data
      - migs_org_human_oral_data
      - migs_org_human_skin_data
      - migs_org_human_vaginal_data
      - migs_org_hydrocarbon_resources_cores_data
      - migs_org_hydrocarbon_resources_fluids_swabs_data
      - migs_org_microbial_mat_biofilm_data
      - migs_org_miscellaneous_natural_or_artificial_environment_data
      - migs_org_plant_associated_data
      - migs_org_sediment_data
      - migs_org_soil_data
      - migs_org_symbiont_associated_data
      - migs_org_wastewater_sludge_data
      - migs_org_water_data
      - migs_pl_data
      - migs_pl_agriculture_data
      - migs_pl_air_data
      - migs_pl_built_environment_data
      - migs_pl_food_animal_and_animal_feed_data
      - migs_pl_food_farm_environment_data
      - migs_pl_food_food_production_facility_data
      - migs_pl_food_human_foods_data
      - migs_pl_host_associated_data
      - migs_pl_human_associated_data
      - migs_pl_human_gut_data
      - migs_pl_human_oral_data
      - migs_pl_human_skin_data
      - migs_pl_human_vaginal_data
      - migs_pl_hydrocarbon_resources_cores_data
      - migs_pl_hydrocarbon_resources_fluids_swabs_data
      - migs_pl_microbial_mat_biofilm_data
      - migs_pl_miscellaneous_natural_or_artificial_environment_data
      - migs_pl_plant_associated_data
      - migs_pl_sediment_data
      - migs_pl_soil_data
      - migs_pl_symbiont_associated_data
      - migs_pl_wastewater_sludge_data
      - migs_pl_water_data
      - migs_vi_data
      - migs_vi_agriculture_data
      - migs_vi_air_data
      - migs_vi_built_environment_data
      - migs_vi_food_animal_and_animal_feed_data
      - migs_vi_food_farm_environment_data
      - migs_vi_food_food_production_facility_data
      - migs_vi_food_human_foods_data
      - migs_vi_host_associated_data
      - migs_vi_human_associated_data
      - migs_vi_human_gut_data
      - migs_vi_human_oral_data
      - migs_vi_human_skin_data
      - migs_vi_human_vaginal_data
      - migs_vi_hydrocarbon_resources_cores_data
      - migs_vi_hydrocarbon_resources_fluids_swabs_data
      - migs_vi_microbial_mat_biofilm_data
      - migs_vi_miscellaneous_natural_or_artificial_environment_data
      - migs_vi_plant_associated_data
      - migs_vi_sediment_data
      - migs_vi_soil_data
      - migs_vi_symbiont_associated_data
      - migs_vi_wastewater_sludge_data
      - migs_vi_water_data
      - mimag_data
      - mimag_agriculture_data
      - mimag_air_data
      - mimag_built_environment_data
      - mimag_food_animal_and_animal_feed_data
      - mimag_food_farm_environment_data
      - mimag_food_food_production_facility_data
      - mimag_food_human_foods_data
      - mimag_host_associated_data
      - mimag_human_associated_data
      - mimag_human_gut_data
      - mimag_human_oral_data
      - mimag_human_skin_data
      - mimag_human_vaginal_data
      - mimag_hydrocarbon_resources_cores_data
      - mimag_hydrocarbon_resources_fluids_swabs_data
      - mimag_microbial_mat_biofilm_data
      - mimag_miscellaneous_natural_or_artificial_environment_data
      - mimag_plant_associated_data
      - mimag_sediment_data
      - mimag_soil_data
      - mimag_symbiont_associated_data
      - mimag_wastewater_sludge_data
      - mimag_water_data
      - mimarks_c_data
      - mimarks_c_agriculture_data
      - mimarks_c_air_data
      - mimarks_c_built_environment_data
      - mimarks_c_food_animal_and_animal_feed_data
      - mimarks_c_food_farm_environment_data
      - mimarks_c_food_food_production_facility_data
      - mimarks_c_food_human_foods_data
      - mimarks_c_host_associated_data
      - mimarks_c_human_associated_data
      - mimarks_c_human_gut_data
      - mimarks_c_human_oral_data
      - mimarks_c_human_skin_data
      - mimarks_c_human_vaginal_data
      - mimarks_c_hydrocarbon_resources_cores_data
      - mimarks_c_hydrocarbon_resources_fluids_swabs_data
      - mimarks_c_microbial_mat_biofilm_data
      - mimarks_c_miscellaneous_natural_or_artificial_environment_data
      - mimarks_c_plant_associated_data
      - mimarks_c_sediment_data
      - mimarks_c_soil_data
      - mimarks_c_symbiont_associated_data
      - mimarks_c_wastewater_sludge_data
      - mimarks_c_water_data
      - mimarks_s_data
      - mimarks_s_agriculture_data
      - mimarks_s_air_data
      - mimarks_s_built_environment_data
      - mimarks_s_food_animal_and_animal_feed_data
      - mimarks_s_food_farm_environment_data
      - mimarks_s_food_food_production_facility_data
      - mimarks_s_food_human_foods_data
      - mimarks_s_host_associated_data
      - mimarks_s_human_associated_data
      - mimarks_s_human_gut_data
      - mimarks_s_human_oral_data
      - mimarks_s_human_skin_data
      - mimarks_s_human_vaginal_data
      - mimarks_s_hydrocarbon_resources_cores_data
      - mimarks_s_hydrocarbon_resources_fluids_swabs_data
      - mimarks_s_microbial_mat_biofilm_data
      - mimarks_s_miscellaneous_natural_or_artificial_environment_data
      - mimarks_s_plant_associated_data
      - mimarks_s_sediment_data
      - mimarks_s_soil_data
      - mimarks_s_symbiont_associated_data
      - mimarks_s_wastewater_sludge_data
      - mimarks_s_water_data
      - mims_data
      - mims_agriculture_data
      - mims_air_data
      - mims_built_environment_data
      - mims_food_animal_and_animal_feed_data
      - mims_food_farm_environment_data
      - mims_food_food_production_facility_data
      - mims_food_human_foods_data
      - mims_host_associated_data
      - mims_human_associated_data
      - mims_human_gut_data
      - mims_human_oral_data
      - mims_human_skin_data
      - mims_human_vaginal_data
      - mims_hydrocarbon_resources_cores_data
      - mims_hydrocarbon_resources_fluids_swabs_data
      - mims_microbial_mat_biofilm_data
      - mims_miscellaneous_natural_or_artificial_environment_data
      - mims_plant_associated_data
      - mims_sediment_data
      - mims_soil_data
      - mims_symbiont_associated_data
      - mims_wastewater_sludge_data
      - mims_water_data
      - misag_data
      - misag_agriculture_data
      - misag_air_data
      - misag_built_environment_data
      - misag_food_animal_and_animal_feed_data
      - misag_food_farm_environment_data
      - misag_food_food_production_facility_data
      - misag_food_human_foods_data
      - misag_host_associated_data
      - misag_human_associated_data
      - misag_human_gut_data
      - misag_human_oral_data
      - misag_human_skin_data
      - misag_human_vaginal_data
      - misag_hydrocarbon_resources_cores_data
      - misag_hydrocarbon_resources_fluids_swabs_data
      - misag_microbial_mat_biofilm_data
      - misag_miscellaneous_natural_or_artificial_environment_data
      - misag_plant_associated_data
      - misag_sediment_data
      - misag_soil_data
      - misag_symbiont_associated_data
      - misag_wastewater_sludge_data
      - misag_water_data
      - miuvig_data
      - miuvig_agriculture_data
      - miuvig_air_data
      - miuvig_built_environment_data
      - miuvig_food_animal_and_animal_feed_data
      - miuvig_food_farm_environment_data
      - miuvig_food_food_production_facility_data
      - miuvig_food_human_foods_data
      - miuvig_host_associated_data
      - miuvig_human_associated_data
      - miuvig_human_gut_data
      - miuvig_human_oral_data
      - miuvig_human_skin_data
      - miuvig_human_vaginal_data
      - miuvig_hydrocarbon_resources_cores_data
      - miuvig_hydrocarbon_resources_fluids_swabs_data
      - miuvig_microbial_mat_biofilm_data
      - miuvig_miscellaneous_natural_or_artificial_environment_data
      - miuvig_plant_associated_data
      - miuvig_sediment_data
      - miuvig_soil_data
      - miuvig_symbiont_associated_data
      - miuvig_wastewater_sludge_data
      - miuvig_water_data
    tree_root: true
  MigsBaAgriculture:
    description: MIxS Data that comply with the MigsBa checklist and the Agriculture
      Extension
    title: MigsBa combined with Agriculture
    in_subset:
      - combination_classes
    is_a: Agriculture
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016018
  MigsBaAir:
    description: MIxS Data that comply with the MigsBa checklist and the Air Extension
    title: MigsBa combined with Air
    in_subset:
      - combination_classes
    is_a: Air
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016000
  MigsBaBuiltEnvironment:
    description: MIxS Data that comply with the MigsBa checklist and the BuiltEnvironment
      Extension
    title: MigsBa combined with BuiltEnvironment
    in_subset:
      - combination_classes
    is_a: BuiltEnvironment
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016001
  MigsBaFoodAnimalAndAnimalFeed:
    description: MIxS Data that comply with the MigsBa checklist and the FoodAnimalAndAnimalFeed
      Extension
    title: MigsBa combined with FoodAnimalAndAnimalFeed
    in_subset:
      - combination_classes
    is_a: FoodAnimalAndAnimalFeed
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016019
  MigsBaFoodFarmEnvironment:
    description: MIxS Data that comply with the MigsBa checklist and the FoodFarmEnvironment
      Extension
    title: MigsBa combined with FoodFarmEnvironment
    in_subset:
      - combination_classes
    is_a: FoodFarmEnvironment
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016020
  MigsBaFoodFoodProductionFacility:
    description: MIxS Data that comply with the MigsBa checklist and the FoodFoodProductionFacility
      Extension
    title: MigsBa combined with FoodFoodProductionFacility
    in_subset:
      - combination_classes
    is_a: FoodFoodProductionFacility
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016021
  MigsBaFoodHumanFoods:
    description: MIxS Data that comply with the MigsBa checklist and the FoodHumanFoods
      Extension
    title: MigsBa combined with FoodHumanFoods
    in_subset:
      - combination_classes
    is_a: FoodHumanFoods
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016022
  MigsBaHostAssociated:
    description: MIxS Data that comply with the MigsBa checklist and the HostAssociated
      Extension
    title: MigsBa combined with HostAssociated
    in_subset:
      - combination_classes
    is_a: HostAssociated
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016002
  MigsBaHumanAssociated:
    description: MIxS Data that comply with the MigsBa checklist and the HumanAssociated
      Extension
    title: MigsBa combined with HumanAssociated
    in_subset:
      - combination_classes
    is_a: HumanAssociated
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016003
  MigsBaHumanGut:
    description: MIxS Data that comply with the MigsBa checklist and the HumanGut
      Extension
    title: MigsBa combined with HumanGut
    in_subset:
      - combination_classes
    is_a: HumanGut
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016004
  MigsBaHumanOral:
    description: MIxS Data that comply with the MigsBa checklist and the HumanOral
      Extension
    title: MigsBa combined with HumanOral
    in_subset:
      - combination_classes
    is_a: HumanOral
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016005
  MigsBaHumanSkin:
    description: MIxS Data that comply with the MigsBa checklist and the HumanSkin
      Extension
    title: MigsBa combined with HumanSkin
    in_subset:
      - combination_classes
    is_a: HumanSkin
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016006
  MigsBaHumanVaginal:
    description: MIxS Data that comply with the MigsBa checklist and the HumanVaginal
      Extension
    title: MigsBa combined with HumanVaginal
    in_subset:
      - combination_classes
    is_a: HumanVaginal
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016007
  MigsBaHydrocarbonResourcesCores:
    description: MIxS Data that comply with the MigsBa checklist and the HydrocarbonResourcesCores
      Extension
    title: MigsBa combined with HydrocarbonResourcesCores
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesCores
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016015
  MigsBaHydrocarbonResourcesFluidsSwabs:
    description: MIxS Data that comply with the MigsBa checklist and the HydrocarbonResourcesFluidsSwabs
      Extension
    title: MigsBa combined with HydrocarbonResourcesFluidsSwabs
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesFluidsSwabs
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016016
  MigsBaMicrobialMatBiofilm:
    description: MIxS Data that comply with the MigsBa checklist and the MicrobialMatBiofilm
      Extension
    title: MigsBa combined with MicrobialMatBiofilm
    in_subset:
      - combination_classes
    is_a: MicrobialMatBiofilm
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016008
  MigsBaMiscellaneousNaturalOrArtificialEnvironment:
    description: MIxS Data that comply with the MigsBa checklist and the MiscellaneousNaturalOrArtificialEnvironment
      Extension
    title: MigsBa combined with MiscellaneousNaturalOrArtificialEnvironment
    in_subset:
      - combination_classes
    is_a: MiscellaneousNaturalOrArtificialEnvironment
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016009
  MigsBaPlantAssociated:
    description: MIxS Data that comply with the MigsBa checklist and the PlantAssociated
      Extension
    title: MigsBa combined with PlantAssociated
    in_subset:
      - combination_classes
    is_a: PlantAssociated
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016010
  MigsBaSediment:
    description: MIxS Data that comply with the MigsBa checklist and the Sediment
      Extension
    title: MigsBa combined with Sediment
    in_subset:
      - combination_classes
    is_a: Sediment
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016011
  MigsBaSoil:
    description: MIxS Data that comply with the MigsBa checklist and the Soil Extension
    title: MigsBa combined with Soil
    in_subset:
      - combination_classes
    is_a: Soil
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016012
  MigsBaSymbiontAssociated:
    description: MIxS Data that comply with the MigsBa checklist and the SymbiontAssociated
      Extension
    title: MigsBa combined with SymbiontAssociated
    in_subset:
      - combination_classes
    is_a: SymbiontAssociated
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016023
  MigsBaWastewaterSludge:
    description: MIxS Data that comply with the MigsBa checklist and the WastewaterSludge
      Extension
    title: MigsBa combined with WastewaterSludge
    in_subset:
      - combination_classes
    is_a: WastewaterSludge
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016013
  MigsBaWater:
    description: MIxS Data that comply with the MigsBa checklist and the Water Extension
    title: MigsBa combined with Water
    in_subset:
      - combination_classes
    is_a: Water
    mixins:
      - MigsBa
    class_uri: MIXS:0010003_0016014
  MigsEuAgriculture:
    description: MIxS Data that comply with the MigsEu checklist and the Agriculture
      Extension
    title: MigsEu combined with Agriculture
    in_subset:
      - combination_classes
    is_a: Agriculture
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016018
  MigsEuAir:
    description: MIxS Data that comply with the MigsEu checklist and the Air Extension
    title: MigsEu combined with Air
    in_subset:
      - combination_classes
    is_a: Air
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016000
  MigsEuBuiltEnvironment:
    description: MIxS Data that comply with the MigsEu checklist and the BuiltEnvironment
      Extension
    title: MigsEu combined with BuiltEnvironment
    in_subset:
      - combination_classes
    is_a: BuiltEnvironment
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016001
  MigsEuFoodAnimalAndAnimalFeed:
    description: MIxS Data that comply with the MigsEu checklist and the FoodAnimalAndAnimalFeed
      Extension
    title: MigsEu combined with FoodAnimalAndAnimalFeed
    in_subset:
      - combination_classes
    is_a: FoodAnimalAndAnimalFeed
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016019
  MigsEuFoodFarmEnvironment:
    description: MIxS Data that comply with the MigsEu checklist and the FoodFarmEnvironment
      Extension
    title: MigsEu combined with FoodFarmEnvironment
    in_subset:
      - combination_classes
    is_a: FoodFarmEnvironment
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016020
  MigsEuFoodFoodProductionFacility:
    description: MIxS Data that comply with the MigsEu checklist and the FoodFoodProductionFacility
      Extension
    title: MigsEu combined with FoodFoodProductionFacility
    in_subset:
      - combination_classes
    is_a: FoodFoodProductionFacility
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016021
  MigsEuFoodHumanFoods:
    description: MIxS Data that comply with the MigsEu checklist and the FoodHumanFoods
      Extension
    title: MigsEu combined with FoodHumanFoods
    in_subset:
      - combination_classes
    is_a: FoodHumanFoods
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016022
  MigsEuHostAssociated:
    description: MIxS Data that comply with the MigsEu checklist and the HostAssociated
      Extension
    title: MigsEu combined with HostAssociated
    in_subset:
      - combination_classes
    is_a: HostAssociated
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016002
  MigsEuHumanAssociated:
    description: MIxS Data that comply with the MigsEu checklist and the HumanAssociated
      Extension
    title: MigsEu combined with HumanAssociated
    in_subset:
      - combination_classes
    is_a: HumanAssociated
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016003
  MigsEuHumanGut:
    description: MIxS Data that comply with the MigsEu checklist and the HumanGut
      Extension
    title: MigsEu combined with HumanGut
    in_subset:
      - combination_classes
    is_a: HumanGut
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016004
  MigsEuHumanOral:
    description: MIxS Data that comply with the MigsEu checklist and the HumanOral
      Extension
    title: MigsEu combined with HumanOral
    in_subset:
      - combination_classes
    is_a: HumanOral
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016005
  MigsEuHumanSkin:
    description: MIxS Data that comply with the MigsEu checklist and the HumanSkin
      Extension
    title: MigsEu combined with HumanSkin
    in_subset:
      - combination_classes
    is_a: HumanSkin
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016006
  MigsEuHumanVaginal:
    description: MIxS Data that comply with the MigsEu checklist and the HumanVaginal
      Extension
    title: MigsEu combined with HumanVaginal
    in_subset:
      - combination_classes
    is_a: HumanVaginal
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016007
  MigsEuHydrocarbonResourcesCores:
    description: MIxS Data that comply with the MigsEu checklist and the HydrocarbonResourcesCores
      Extension
    title: MigsEu combined with HydrocarbonResourcesCores
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesCores
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016015
  MigsEuHydrocarbonResourcesFluidsSwabs:
    description: MIxS Data that comply with the MigsEu checklist and the HydrocarbonResourcesFluidsSwabs
      Extension
    title: MigsEu combined with HydrocarbonResourcesFluidsSwabs
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesFluidsSwabs
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016016
  MigsEuMicrobialMatBiofilm:
    description: MIxS Data that comply with the MigsEu checklist and the MicrobialMatBiofilm
      Extension
    title: MigsEu combined with MicrobialMatBiofilm
    in_subset:
      - combination_classes
    is_a: MicrobialMatBiofilm
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016008
  MigsEuMiscellaneousNaturalOrArtificialEnvironment:
    description: MIxS Data that comply with the MigsEu checklist and the MiscellaneousNaturalOrArtificialEnvironment
      Extension
    title: MigsEu combined with MiscellaneousNaturalOrArtificialEnvironment
    in_subset:
      - combination_classes
    is_a: MiscellaneousNaturalOrArtificialEnvironment
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016009
  MigsEuPlantAssociated:
    description: MIxS Data that comply with the MigsEu checklist and the PlantAssociated
      Extension
    title: MigsEu combined with PlantAssociated
    in_subset:
      - combination_classes
    is_a: PlantAssociated
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016010
  MigsEuSediment:
    description: MIxS Data that comply with the MigsEu checklist and the Sediment
      Extension
    title: MigsEu combined with Sediment
    in_subset:
      - combination_classes
    is_a: Sediment
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016011
  MigsEuSoil:
    description: MIxS Data that comply with the MigsEu checklist and the Soil Extension
    title: MigsEu combined with Soil
    in_subset:
      - combination_classes
    is_a: Soil
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016012
  MigsEuSymbiontAssociated:
    description: MIxS Data that comply with the MigsEu checklist and the SymbiontAssociated
      Extension
    title: MigsEu combined with SymbiontAssociated
    in_subset:
      - combination_classes
    is_a: SymbiontAssociated
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016023
  MigsEuWastewaterSludge:
    description: MIxS Data that comply with the MigsEu checklist and the WastewaterSludge
      Extension
    title: MigsEu combined with WastewaterSludge
    in_subset:
      - combination_classes
    is_a: WastewaterSludge
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016013
  MigsEuWater:
    description: MIxS Data that comply with the MigsEu checklist and the Water Extension
    title: MigsEu combined with Water
    in_subset:
      - combination_classes
    is_a: Water
    mixins:
      - MigsEu
    class_uri: MIXS:0010002_0016014
  MigsOrgAgriculture:
    description: MIxS Data that comply with the MigsOrg checklist and the Agriculture
      Extension
    title: MigsOrg combined with Agriculture
    in_subset:
      - combination_classes
    is_a: Agriculture
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016018
  MigsOrgAir:
    description: MIxS Data that comply with the MigsOrg checklist and the Air Extension
    title: MigsOrg combined with Air
    in_subset:
      - combination_classes
    is_a: Air
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016000
  MigsOrgBuiltEnvironment:
    description: MIxS Data that comply with the MigsOrg checklist and the BuiltEnvironment
      Extension
    title: MigsOrg combined with BuiltEnvironment
    in_subset:
      - combination_classes
    is_a: BuiltEnvironment
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016001
  MigsOrgFoodAnimalAndAnimalFeed:
    description: MIxS Data that comply with the MigsOrg checklist and the FoodAnimalAndAnimalFeed
      Extension
    title: MigsOrg combined with FoodAnimalAndAnimalFeed
    in_subset:
      - combination_classes
    is_a: FoodAnimalAndAnimalFeed
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016019
  MigsOrgFoodFarmEnvironment:
    description: MIxS Data that comply with the MigsOrg checklist and the FoodFarmEnvironment
      Extension
    title: MigsOrg combined with FoodFarmEnvironment
    in_subset:
      - combination_classes
    is_a: FoodFarmEnvironment
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016020
  MigsOrgFoodFoodProductionFacility:
    description: MIxS Data that comply with the MigsOrg checklist and the FoodFoodProductionFacility
      Extension
    title: MigsOrg combined with FoodFoodProductionFacility
    in_subset:
      - combination_classes
    is_a: FoodFoodProductionFacility
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016021
  MigsOrgFoodHumanFoods:
    description: MIxS Data that comply with the MigsOrg checklist and the FoodHumanFoods
      Extension
    title: MigsOrg combined with FoodHumanFoods
    in_subset:
      - combination_classes
    is_a: FoodHumanFoods
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016022
  MigsOrgHostAssociated:
    description: MIxS Data that comply with the MigsOrg checklist and the HostAssociated
      Extension
    title: MigsOrg combined with HostAssociated
    in_subset:
      - combination_classes
    is_a: HostAssociated
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016002
  MigsOrgHumanAssociated:
    description: MIxS Data that comply with the MigsOrg checklist and the HumanAssociated
      Extension
    title: MigsOrg combined with HumanAssociated
    in_subset:
      - combination_classes
    is_a: HumanAssociated
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016003
  MigsOrgHumanGut:
    description: MIxS Data that comply with the MigsOrg checklist and the HumanGut
      Extension
    title: MigsOrg combined with HumanGut
    in_subset:
      - combination_classes
    is_a: HumanGut
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016004
  MigsOrgHumanOral:
    description: MIxS Data that comply with the MigsOrg checklist and the HumanOral
      Extension
    title: MigsOrg combined with HumanOral
    in_subset:
      - combination_classes
    is_a: HumanOral
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016005
  MigsOrgHumanSkin:
    description: MIxS Data that comply with the MigsOrg checklist and the HumanSkin
      Extension
    title: MigsOrg combined with HumanSkin
    in_subset:
      - combination_classes
    is_a: HumanSkin
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016006
  MigsOrgHumanVaginal:
    description: MIxS Data that comply with the MigsOrg checklist and the HumanVaginal
      Extension
    title: MigsOrg combined with HumanVaginal
    in_subset:
      - combination_classes
    is_a: HumanVaginal
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016007
  MigsOrgHydrocarbonResourcesCores:
    description: MIxS Data that comply with the MigsOrg checklist and the HydrocarbonResourcesCores
      Extension
    title: MigsOrg combined with HydrocarbonResourcesCores
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesCores
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016015
  MigsOrgHydrocarbonResourcesFluidsSwabs:
    description: MIxS Data that comply with the MigsOrg checklist and the HydrocarbonResourcesFluidsSwabs
      Extension
    title: MigsOrg combined with HydrocarbonResourcesFluidsSwabs
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesFluidsSwabs
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016016
  MigsOrgMicrobialMatBiofilm:
    description: MIxS Data that comply with the MigsOrg checklist and the MicrobialMatBiofilm
      Extension
    title: MigsOrg combined with MicrobialMatBiofilm
    in_subset:
      - combination_classes
    is_a: MicrobialMatBiofilm
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016008
  MigsOrgMiscellaneousNaturalOrArtificialEnvironment:
    description: MIxS Data that comply with the MigsOrg checklist and the MiscellaneousNaturalOrArtificialEnvironment
      Extension
    title: MigsOrg combined with MiscellaneousNaturalOrArtificialEnvironment
    in_subset:
      - combination_classes
    is_a: MiscellaneousNaturalOrArtificialEnvironment
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016009
  MigsOrgPlantAssociated:
    description: MIxS Data that comply with the MigsOrg checklist and the PlantAssociated
      Extension
    title: MigsOrg combined with PlantAssociated
    in_subset:
      - combination_classes
    is_a: PlantAssociated
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016010
  MigsOrgSediment:
    description: MIxS Data that comply with the MigsOrg checklist and the Sediment
      Extension
    title: MigsOrg combined with Sediment
    in_subset:
      - combination_classes
    is_a: Sediment
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016011
  MigsOrgSoil:
    description: MIxS Data that comply with the MigsOrg checklist and the Soil Extension
    title: MigsOrg combined with Soil
    in_subset:
      - combination_classes
    is_a: Soil
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016012
  MigsOrgSymbiontAssociated:
    description: MIxS Data that comply with the MigsOrg checklist and the SymbiontAssociated
      Extension
    title: MigsOrg combined with SymbiontAssociated
    in_subset:
      - combination_classes
    is_a: SymbiontAssociated
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016023
  MigsOrgWastewaterSludge:
    description: MIxS Data that comply with the MigsOrg checklist and the WastewaterSludge
      Extension
    title: MigsOrg combined with WastewaterSludge
    in_subset:
      - combination_classes
    is_a: WastewaterSludge
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016013
  MigsOrgWater:
    description: MIxS Data that comply with the MigsOrg checklist and the Water Extension
    title: MigsOrg combined with Water
    in_subset:
      - combination_classes
    is_a: Water
    mixins:
      - MigsOrg
    class_uri: MIXS:0010006_0016014
  MigsPlAgriculture:
    description: MIxS Data that comply with the MigsPl checklist and the Agriculture
      Extension
    title: MigsPl combined with Agriculture
    in_subset:
      - combination_classes
    is_a: Agriculture
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016018
  MigsPlAir:
    description: MIxS Data that comply with the MigsPl checklist and the Air Extension
    title: MigsPl combined with Air
    in_subset:
      - combination_classes
    is_a: Air
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016000
  MigsPlBuiltEnvironment:
    description: MIxS Data that comply with the MigsPl checklist and the BuiltEnvironment
      Extension
    title: MigsPl combined with BuiltEnvironment
    in_subset:
      - combination_classes
    is_a: BuiltEnvironment
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016001
  MigsPlFoodAnimalAndAnimalFeed:
    description: MIxS Data that comply with the MigsPl checklist and the FoodAnimalAndAnimalFeed
      Extension
    title: MigsPl combined with FoodAnimalAndAnimalFeed
    in_subset:
      - combination_classes
    is_a: FoodAnimalAndAnimalFeed
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016019
  MigsPlFoodFarmEnvironment:
    description: MIxS Data that comply with the MigsPl checklist and the FoodFarmEnvironment
      Extension
    title: MigsPl combined with FoodFarmEnvironment
    in_subset:
      - combination_classes
    is_a: FoodFarmEnvironment
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016020
  MigsPlFoodFoodProductionFacility:
    description: MIxS Data that comply with the MigsPl checklist and the FoodFoodProductionFacility
      Extension
    title: MigsPl combined with FoodFoodProductionFacility
    in_subset:
      - combination_classes
    is_a: FoodFoodProductionFacility
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016021
  MigsPlFoodHumanFoods:
    description: MIxS Data that comply with the MigsPl checklist and the FoodHumanFoods
      Extension
    title: MigsPl combined with FoodHumanFoods
    in_subset:
      - combination_classes
    is_a: FoodHumanFoods
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016022
  MigsPlHostAssociated:
    description: MIxS Data that comply with the MigsPl checklist and the HostAssociated
      Extension
    title: MigsPl combined with HostAssociated
    in_subset:
      - combination_classes
    is_a: HostAssociated
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016002
  MigsPlHumanAssociated:
    description: MIxS Data that comply with the MigsPl checklist and the HumanAssociated
      Extension
    title: MigsPl combined with HumanAssociated
    in_subset:
      - combination_classes
    is_a: HumanAssociated
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016003
  MigsPlHumanGut:
    description: MIxS Data that comply with the MigsPl checklist and the HumanGut
      Extension
    title: MigsPl combined with HumanGut
    in_subset:
      - combination_classes
    is_a: HumanGut
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016004
  MigsPlHumanOral:
    description: MIxS Data that comply with the MigsPl checklist and the HumanOral
      Extension
    title: MigsPl combined with HumanOral
    in_subset:
      - combination_classes
    is_a: HumanOral
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016005
  MigsPlHumanSkin:
    description: MIxS Data that comply with the MigsPl checklist and the HumanSkin
      Extension
    title: MigsPl combined with HumanSkin
    in_subset:
      - combination_classes
    is_a: HumanSkin
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016006
  MigsPlHumanVaginal:
    description: MIxS Data that comply with the MigsPl checklist and the HumanVaginal
      Extension
    title: MigsPl combined with HumanVaginal
    in_subset:
      - combination_classes
    is_a: HumanVaginal
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016007
  MigsPlHydrocarbonResourcesCores:
    description: MIxS Data that comply with the MigsPl checklist and the HydrocarbonResourcesCores
      Extension
    title: MigsPl combined with HydrocarbonResourcesCores
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesCores
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016015
  MigsPlHydrocarbonResourcesFluidsSwabs:
    description: MIxS Data that comply with the MigsPl checklist and the HydrocarbonResourcesFluidsSwabs
      Extension
    title: MigsPl combined with HydrocarbonResourcesFluidsSwabs
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesFluidsSwabs
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016016
  MigsPlMicrobialMatBiofilm:
    description: MIxS Data that comply with the MigsPl checklist and the MicrobialMatBiofilm
      Extension
    title: MigsPl combined with MicrobialMatBiofilm
    in_subset:
      - combination_classes
    is_a: MicrobialMatBiofilm
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016008
  MigsPlMiscellaneousNaturalOrArtificialEnvironment:
    description: MIxS Data that comply with the MigsPl checklist and the MiscellaneousNaturalOrArtificialEnvironment
      Extension
    title: MigsPl combined with MiscellaneousNaturalOrArtificialEnvironment
    in_subset:
      - combination_classes
    is_a: MiscellaneousNaturalOrArtificialEnvironment
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016009
  MigsPlPlantAssociated:
    description: MIxS Data that comply with the MigsPl checklist and the PlantAssociated
      Extension
    title: MigsPl combined with PlantAssociated
    in_subset:
      - combination_classes
    is_a: PlantAssociated
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016010
  MigsPlSediment:
    description: MIxS Data that comply with the MigsPl checklist and the Sediment
      Extension
    title: MigsPl combined with Sediment
    in_subset:
      - combination_classes
    is_a: Sediment
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016011
  MigsPlSoil:
    description: MIxS Data that comply with the MigsPl checklist and the Soil Extension
    title: MigsPl combined with Soil
    in_subset:
      - combination_classes
    is_a: Soil
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016012
  MigsPlSymbiontAssociated:
    description: MIxS Data that comply with the MigsPl checklist and the SymbiontAssociated
      Extension
    title: MigsPl combined with SymbiontAssociated
    in_subset:
      - combination_classes
    is_a: SymbiontAssociated
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016023
  MigsPlWastewaterSludge:
    description: MIxS Data that comply with the MigsPl checklist and the WastewaterSludge
      Extension
    title: MigsPl combined with WastewaterSludge
    in_subset:
      - combination_classes
    is_a: WastewaterSludge
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016013
  MigsPlWater:
    description: MIxS Data that comply with the MigsPl checklist and the Water Extension
    title: MigsPl combined with Water
    in_subset:
      - combination_classes
    is_a: Water
    mixins:
      - MigsPl
    class_uri: MIXS:0010004_0016014
  MigsViAgriculture:
    description: MIxS Data that comply with the MigsVi checklist and the Agriculture
      Extension
    title: MigsVi combined with Agriculture
    in_subset:
      - combination_classes
    is_a: Agriculture
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016018
  MigsViAir:
    description: MIxS Data that comply with the MigsVi checklist and the Air Extension
    title: MigsVi combined with Air
    in_subset:
      - combination_classes
    is_a: Air
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016000
  MigsViBuiltEnvironment:
    description: MIxS Data that comply with the MigsVi checklist and the BuiltEnvironment
      Extension
    title: MigsVi combined with BuiltEnvironment
    in_subset:
      - combination_classes
    is_a: BuiltEnvironment
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016001
  MigsViFoodAnimalAndAnimalFeed:
    description: MIxS Data that comply with the MigsVi checklist and the FoodAnimalAndAnimalFeed
      Extension
    title: MigsVi combined with FoodAnimalAndAnimalFeed
    in_subset:
      - combination_classes
    is_a: FoodAnimalAndAnimalFeed
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016019
  MigsViFoodFarmEnvironment:
    description: MIxS Data that comply with the MigsVi checklist and the FoodFarmEnvironment
      Extension
    title: MigsVi combined with FoodFarmEnvironment
    in_subset:
      - combination_classes
    is_a: FoodFarmEnvironment
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016020
  MigsViFoodFoodProductionFacility:
    description: MIxS Data that comply with the MigsVi checklist and the FoodFoodProductionFacility
      Extension
    title: MigsVi combined with FoodFoodProductionFacility
    in_subset:
      - combination_classes
    is_a: FoodFoodProductionFacility
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016021
  MigsViFoodHumanFoods:
    description: MIxS Data that comply with the MigsVi checklist and the FoodHumanFoods
      Extension
    title: MigsVi combined with FoodHumanFoods
    in_subset:
      - combination_classes
    is_a: FoodHumanFoods
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016022
  MigsViHostAssociated:
    description: MIxS Data that comply with the MigsVi checklist and the HostAssociated
      Extension
    title: MigsVi combined with HostAssociated
    in_subset:
      - combination_classes
    is_a: HostAssociated
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016002
  MigsViHumanAssociated:
    description: MIxS Data that comply with the MigsVi checklist and the HumanAssociated
      Extension
    title: MigsVi combined with HumanAssociated
    in_subset:
      - combination_classes
    is_a: HumanAssociated
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016003
  MigsViHumanGut:
    description: MIxS Data that comply with the MigsVi checklist and the HumanGut
      Extension
    title: MigsVi combined with HumanGut
    in_subset:
      - combination_classes
    is_a: HumanGut
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016004
  MigsViHumanOral:
    description: MIxS Data that comply with the MigsVi checklist and the HumanOral
      Extension
    title: MigsVi combined with HumanOral
    in_subset:
      - combination_classes
    is_a: HumanOral
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016005
  MigsViHumanSkin:
    description: MIxS Data that comply with the MigsVi checklist and the HumanSkin
      Extension
    title: MigsVi combined with HumanSkin
    in_subset:
      - combination_classes
    is_a: HumanSkin
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016006
  MigsViHumanVaginal:
    description: MIxS Data that comply with the MigsVi checklist and the HumanVaginal
      Extension
    title: MigsVi combined with HumanVaginal
    in_subset:
      - combination_classes
    is_a: HumanVaginal
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016007
  MigsViHydrocarbonResourcesCores:
    description: MIxS Data that comply with the MigsVi checklist and the HydrocarbonResourcesCores
      Extension
    title: MigsVi combined with HydrocarbonResourcesCores
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesCores
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016015
  MigsViHydrocarbonResourcesFluidsSwabs:
    description: MIxS Data that comply with the MigsVi checklist and the HydrocarbonResourcesFluidsSwabs
      Extension
    title: MigsVi combined with HydrocarbonResourcesFluidsSwabs
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesFluidsSwabs
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016016
  MigsViMicrobialMatBiofilm:
    description: MIxS Data that comply with the MigsVi checklist and the MicrobialMatBiofilm
      Extension
    title: MigsVi combined with MicrobialMatBiofilm
    in_subset:
      - combination_classes
    is_a: MicrobialMatBiofilm
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016008
  MigsViMiscellaneousNaturalOrArtificialEnvironment:
    description: MIxS Data that comply with the MigsVi checklist and the MiscellaneousNaturalOrArtificialEnvironment
      Extension
    title: MigsVi combined with MiscellaneousNaturalOrArtificialEnvironment
    in_subset:
      - combination_classes
    is_a: MiscellaneousNaturalOrArtificialEnvironment
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016009
  MigsViPlantAssociated:
    description: MIxS Data that comply with the MigsVi checklist and the PlantAssociated
      Extension
    title: MigsVi combined with PlantAssociated
    in_subset:
      - combination_classes
    is_a: PlantAssociated
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016010
  MigsViSediment:
    description: MIxS Data that comply with the MigsVi checklist and the Sediment
      Extension
    title: MigsVi combined with Sediment
    in_subset:
      - combination_classes
    is_a: Sediment
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016011
  MigsViSoil:
    description: MIxS Data that comply with the MigsVi checklist and the Soil Extension
    title: MigsVi combined with Soil
    in_subset:
      - combination_classes
    is_a: Soil
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016012
  MigsViSymbiontAssociated:
    description: MIxS Data that comply with the MigsVi checklist and the SymbiontAssociated
      Extension
    title: MigsVi combined with SymbiontAssociated
    in_subset:
      - combination_classes
    is_a: SymbiontAssociated
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016023
  MigsViWastewaterSludge:
    description: MIxS Data that comply with the MigsVi checklist and the WastewaterSludge
      Extension
    title: MigsVi combined with WastewaterSludge
    in_subset:
      - combination_classes
    is_a: WastewaterSludge
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016013
  MigsViWater:
    description: MIxS Data that comply with the MigsVi checklist and the Water Extension
    title: MigsVi combined with Water
    in_subset:
      - combination_classes
    is_a: Water
    mixins:
      - MigsVi
    class_uri: MIXS:0010005_0016014
  MimagAgriculture:
    description: MIxS Data that comply with the Mimag checklist and the Agriculture
      Extension
    title: Mimag combined with Agriculture
    in_subset:
      - combination_classes
    is_a: Agriculture
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016018
  MimagAir:
    description: MIxS Data that comply with the Mimag checklist and the Air Extension
    title: Mimag combined with Air
    in_subset:
      - combination_classes
    is_a: Air
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016000
  MimagBuiltEnvironment:
    description: MIxS Data that comply with the Mimag checklist and the BuiltEnvironment
      Extension
    title: Mimag combined with BuiltEnvironment
    in_subset:
      - combination_classes
    is_a: BuiltEnvironment
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016001
  MimagFoodAnimalAndAnimalFeed:
    description: MIxS Data that comply with the Mimag checklist and the FoodAnimalAndAnimalFeed
      Extension
    title: Mimag combined with FoodAnimalAndAnimalFeed
    in_subset:
      - combination_classes
    is_a: FoodAnimalAndAnimalFeed
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016019
  MimagFoodFarmEnvironment:
    description: MIxS Data that comply with the Mimag checklist and the FoodFarmEnvironment
      Extension
    title: Mimag combined with FoodFarmEnvironment
    in_subset:
      - combination_classes
    is_a: FoodFarmEnvironment
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016020
  MimagFoodFoodProductionFacility:
    description: MIxS Data that comply with the Mimag checklist and the FoodFoodProductionFacility
      Extension
    title: Mimag combined with FoodFoodProductionFacility
    in_subset:
      - combination_classes
    is_a: FoodFoodProductionFacility
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016021
  MimagFoodHumanFoods:
    description: MIxS Data that comply with the Mimag checklist and the FoodHumanFoods
      Extension
    title: Mimag combined with FoodHumanFoods
    in_subset:
      - combination_classes
    is_a: FoodHumanFoods
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016022
  MimagHostAssociated:
    description: MIxS Data that comply with the Mimag checklist and the HostAssociated
      Extension
    title: Mimag combined with HostAssociated
    in_subset:
      - combination_classes
    is_a: HostAssociated
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016002
  MimagHumanAssociated:
    description: MIxS Data that comply with the Mimag checklist and the HumanAssociated
      Extension
    title: Mimag combined with HumanAssociated
    in_subset:
      - combination_classes
    is_a: HumanAssociated
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016003
  MimagHumanGut:
    description: MIxS Data that comply with the Mimag checklist and the HumanGut Extension
    title: Mimag combined with HumanGut
    in_subset:
      - combination_classes
    is_a: HumanGut
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016004
  MimagHumanOral:
    description: MIxS Data that comply with the Mimag checklist and the HumanOral
      Extension
    title: Mimag combined with HumanOral
    in_subset:
      - combination_classes
    is_a: HumanOral
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016005
  MimagHumanSkin:
    description: MIxS Data that comply with the Mimag checklist and the HumanSkin
      Extension
    title: Mimag combined with HumanSkin
    in_subset:
      - combination_classes
    is_a: HumanSkin
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016006
  MimagHumanVaginal:
    description: MIxS Data that comply with the Mimag checklist and the HumanVaginal
      Extension
    title: Mimag combined with HumanVaginal
    in_subset:
      - combination_classes
    is_a: HumanVaginal
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016007
  MimagHydrocarbonResourcesCores:
    description: MIxS Data that comply with the Mimag checklist and the HydrocarbonResourcesCores
      Extension
    title: Mimag combined with HydrocarbonResourcesCores
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesCores
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016015
  MimagHydrocarbonResourcesFluidsSwabs:
    description: MIxS Data that comply with the Mimag checklist and the HydrocarbonResourcesFluidsSwabs
      Extension
    title: Mimag combined with HydrocarbonResourcesFluidsSwabs
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesFluidsSwabs
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016016
  MimagMicrobialMatBiofilm:
    description: MIxS Data that comply with the Mimag checklist and the MicrobialMatBiofilm
      Extension
    title: Mimag combined with MicrobialMatBiofilm
    in_subset:
      - combination_classes
    is_a: MicrobialMatBiofilm
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016008
  MimagMiscellaneousNaturalOrArtificialEnvironment:
    description: MIxS Data that comply with the Mimag checklist and the MiscellaneousNaturalOrArtificialEnvironment
      Extension
    title: Mimag combined with MiscellaneousNaturalOrArtificialEnvironment
    in_subset:
      - combination_classes
    is_a: MiscellaneousNaturalOrArtificialEnvironment
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016009
  MimagPlantAssociated:
    description: MIxS Data that comply with the Mimag checklist and the PlantAssociated
      Extension
    title: Mimag combined with PlantAssociated
    in_subset:
      - combination_classes
    is_a: PlantAssociated
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016010
  MimagSediment:
    description: MIxS Data that comply with the Mimag checklist and the Sediment Extension
    title: Mimag combined with Sediment
    in_subset:
      - combination_classes
    is_a: Sediment
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016011
  MimagSoil:
    description: MIxS Data that comply with the Mimag checklist and the Soil Extension
    title: Mimag combined with Soil
    in_subset:
      - combination_classes
    is_a: Soil
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016012
  MimagSymbiontAssociated:
    description: MIxS Data that comply with the Mimag checklist and the SymbiontAssociated
      Extension
    title: Mimag combined with SymbiontAssociated
    in_subset:
      - combination_classes
    is_a: SymbiontAssociated
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016023
  MimagWastewaterSludge:
    description: MIxS Data that comply with the Mimag checklist and the WastewaterSludge
      Extension
    title: Mimag combined with WastewaterSludge
    in_subset:
      - combination_classes
    is_a: WastewaterSludge
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016013
  MimagWater:
    description: MIxS Data that comply with the Mimag checklist and the Water Extension
    title: Mimag combined with Water
    in_subset:
      - combination_classes
    is_a: Water
    mixins:
      - Mimag
    class_uri: MIXS:0010011_0016014
  MimarksCAgriculture:
    description: MIxS Data that comply with the MimarksC checklist and the Agriculture
      Extension
    title: MimarksC combined with Agriculture
    in_subset:
      - combination_classes
    is_a: Agriculture
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016018
  MimarksCAir:
    description: MIxS Data that comply with the MimarksC checklist and the Air Extension
    title: MimarksC combined with Air
    in_subset:
      - combination_classes
    is_a: Air
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016000
  MimarksCBuiltEnvironment:
    description: MIxS Data that comply with the MimarksC checklist and the BuiltEnvironment
      Extension
    title: MimarksC combined with BuiltEnvironment
    in_subset:
      - combination_classes
    is_a: BuiltEnvironment
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016001
  MimarksCFoodAnimalAndAnimalFeed:
    description: MIxS Data that comply with the MimarksC checklist and the FoodAnimalAndAnimalFeed
      Extension
    title: MimarksC combined with FoodAnimalAndAnimalFeed
    in_subset:
      - combination_classes
    is_a: FoodAnimalAndAnimalFeed
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016019
  MimarksCFoodFarmEnvironment:
    description: MIxS Data that comply with the MimarksC checklist and the FoodFarmEnvironment
      Extension
    title: MimarksC combined with FoodFarmEnvironment
    in_subset:
      - combination_classes
    is_a: FoodFarmEnvironment
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016020
  MimarksCFoodFoodProductionFacility:
    description: MIxS Data that comply with the MimarksC checklist and the FoodFoodProductionFacility
      Extension
    title: MimarksC combined with FoodFoodProductionFacility
    in_subset:
      - combination_classes
    is_a: FoodFoodProductionFacility
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016021
  MimarksCFoodHumanFoods:
    description: MIxS Data that comply with the MimarksC checklist and the FoodHumanFoods
      Extension
    title: MimarksC combined with FoodHumanFoods
    in_subset:
      - combination_classes
    is_a: FoodHumanFoods
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016022
  MimarksCHostAssociated:
    description: MIxS Data that comply with the MimarksC checklist and the HostAssociated
      Extension
    title: MimarksC combined with HostAssociated
    in_subset:
      - combination_classes
    is_a: HostAssociated
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016002
  MimarksCHumanAssociated:
    description: MIxS Data that comply with the MimarksC checklist and the HumanAssociated
      Extension
    title: MimarksC combined with HumanAssociated
    in_subset:
      - combination_classes
    is_a: HumanAssociated
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016003
  MimarksCHumanGut:
    description: MIxS Data that comply with the MimarksC checklist and the HumanGut
      Extension
    title: MimarksC combined with HumanGut
    in_subset:
      - combination_classes
    is_a: HumanGut
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016004
  MimarksCHumanOral:
    description: MIxS Data that comply with the MimarksC checklist and the HumanOral
      Extension
    title: MimarksC combined with HumanOral
    in_subset:
      - combination_classes
    is_a: HumanOral
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016005
  MimarksCHumanSkin:
    description: MIxS Data that comply with the MimarksC checklist and the HumanSkin
      Extension
    title: MimarksC combined with HumanSkin
    in_subset:
      - combination_classes
    is_a: HumanSkin
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016006
  MimarksCHumanVaginal:
    description: MIxS Data that comply with the MimarksC checklist and the HumanVaginal
      Extension
    title: MimarksC combined with HumanVaginal
    in_subset:
      - combination_classes
    is_a: HumanVaginal
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016007
  MimarksCHydrocarbonResourcesCores:
    description: MIxS Data that comply with the MimarksC checklist and the HydrocarbonResourcesCores
      Extension
    title: MimarksC combined with HydrocarbonResourcesCores
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesCores
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016015
  MimarksCHydrocarbonResourcesFluidsSwabs:
    description: MIxS Data that comply with the MimarksC checklist and the HydrocarbonResourcesFluidsSwabs
      Extension
    title: MimarksC combined with HydrocarbonResourcesFluidsSwabs
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesFluidsSwabs
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016016
  MimarksCMicrobialMatBiofilm:
    description: MIxS Data that comply with the MimarksC checklist and the MicrobialMatBiofilm
      Extension
    title: MimarksC combined with MicrobialMatBiofilm
    in_subset:
      - combination_classes
    is_a: MicrobialMatBiofilm
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016008
  MimarksCMiscellaneousNaturalOrArtificialEnvironment:
    description: MIxS Data that comply with the MimarksC checklist and the MiscellaneousNaturalOrArtificialEnvironment
      Extension
    title: MimarksC combined with MiscellaneousNaturalOrArtificialEnvironment
    in_subset:
      - combination_classes
    is_a: MiscellaneousNaturalOrArtificialEnvironment
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016009
  MimarksCPlantAssociated:
    description: MIxS Data that comply with the MimarksC checklist and the PlantAssociated
      Extension
    title: MimarksC combined with PlantAssociated
    in_subset:
      - combination_classes
    is_a: PlantAssociated
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016010
  MimarksCSediment:
    description: MIxS Data that comply with the MimarksC checklist and the Sediment
      Extension
    title: MimarksC combined with Sediment
    in_subset:
      - combination_classes
    is_a: Sediment
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016011
  MimarksCSoil:
    description: MIxS Data that comply with the MimarksC checklist and the Soil Extension
    title: MimarksC combined with Soil
    in_subset:
      - combination_classes
    is_a: Soil
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016012
  MimarksCSymbiontAssociated:
    description: MIxS Data that comply with the MimarksC checklist and the SymbiontAssociated
      Extension
    title: MimarksC combined with SymbiontAssociated
    in_subset:
      - combination_classes
    is_a: SymbiontAssociated
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016023
  MimarksCWastewaterSludge:
    description: MIxS Data that comply with the MimarksC checklist and the WastewaterSludge
      Extension
    title: MimarksC combined with WastewaterSludge
    in_subset:
      - combination_classes
    is_a: WastewaterSludge
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016013
  MimarksCWater:
    description: MIxS Data that comply with the MimarksC checklist and the Water Extension
    title: MimarksC combined with Water
    in_subset:
      - combination_classes
    is_a: Water
    mixins:
      - MimarksC
    class_uri: MIXS:0010009_0016014
  MimarksSAgriculture:
    description: MIxS Data that comply with the MimarksS checklist and the Agriculture
      Extension
    title: MimarksS combined with Agriculture
    in_subset:
      - combination_classes
    is_a: Agriculture
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016018
  MimarksSAir:
    description: MIxS Data that comply with the MimarksS checklist and the Air Extension
    title: MimarksS combined with Air
    in_subset:
      - combination_classes
    is_a: Air
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016000
  MimarksSBuiltEnvironment:
    description: MIxS Data that comply with the MimarksS checklist and the BuiltEnvironment
      Extension
    title: MimarksS combined with BuiltEnvironment
    in_subset:
      - combination_classes
    is_a: BuiltEnvironment
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016001
  MimarksSFoodAnimalAndAnimalFeed:
    description: MIxS Data that comply with the MimarksS checklist and the FoodAnimalAndAnimalFeed
      Extension
    title: MimarksS combined with FoodAnimalAndAnimalFeed
    in_subset:
      - combination_classes
    is_a: FoodAnimalAndAnimalFeed
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016019
  MimarksSFoodFarmEnvironment:
    description: MIxS Data that comply with the MimarksS checklist and the FoodFarmEnvironment
      Extension
    title: MimarksS combined with FoodFarmEnvironment
    in_subset:
      - combination_classes
    is_a: FoodFarmEnvironment
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016020
  MimarksSFoodFoodProductionFacility:
    description: MIxS Data that comply with the MimarksS checklist and the FoodFoodProductionFacility
      Extension
    title: MimarksS combined with FoodFoodProductionFacility
    in_subset:
      - combination_classes
    is_a: FoodFoodProductionFacility
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016021
  MimarksSFoodHumanFoods:
    description: MIxS Data that comply with the MimarksS checklist and the FoodHumanFoods
      Extension
    title: MimarksS combined with FoodHumanFoods
    in_subset:
      - combination_classes
    is_a: FoodHumanFoods
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016022
  MimarksSHostAssociated:
    description: MIxS Data that comply with the MimarksS checklist and the HostAssociated
      Extension
    title: MimarksS combined with HostAssociated
    in_subset:
      - combination_classes
    is_a: HostAssociated
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016002
  MimarksSHumanAssociated:
    description: MIxS Data that comply with the MimarksS checklist and the HumanAssociated
      Extension
    title: MimarksS combined with HumanAssociated
    in_subset:
      - combination_classes
    is_a: HumanAssociated
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016003
  MimarksSHumanGut:
    description: MIxS Data that comply with the MimarksS checklist and the HumanGut
      Extension
    title: MimarksS combined with HumanGut
    in_subset:
      - combination_classes
    is_a: HumanGut
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016004
  MimarksSHumanOral:
    description: MIxS Data that comply with the MimarksS checklist and the HumanOral
      Extension
    title: MimarksS combined with HumanOral
    in_subset:
      - combination_classes
    is_a: HumanOral
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016005
  MimarksSHumanSkin:
    description: MIxS Data that comply with the MimarksS checklist and the HumanSkin
      Extension
    title: MimarksS combined with HumanSkin
    in_subset:
      - combination_classes
    is_a: HumanSkin
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016006
  MimarksSHumanVaginal:
    description: MIxS Data that comply with the MimarksS checklist and the HumanVaginal
      Extension
    title: MimarksS combined with HumanVaginal
    in_subset:
      - combination_classes
    is_a: HumanVaginal
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016007
  MimarksSHydrocarbonResourcesCores:
    description: MIxS Data that comply with the MimarksS checklist and the HydrocarbonResourcesCores
      Extension
    title: MimarksS combined with HydrocarbonResourcesCores
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesCores
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016015
  MimarksSHydrocarbonResourcesFluidsSwabs:
    description: MIxS Data that comply with the MimarksS checklist and the HydrocarbonResourcesFluidsSwabs
      Extension
    title: MimarksS combined with HydrocarbonResourcesFluidsSwabs
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesFluidsSwabs
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016016
  MimarksSMicrobialMatBiofilm:
    description: MIxS Data that comply with the MimarksS checklist and the MicrobialMatBiofilm
      Extension
    title: MimarksS combined with MicrobialMatBiofilm
    in_subset:
      - combination_classes
    is_a: MicrobialMatBiofilm
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016008
  MimarksSMiscellaneousNaturalOrArtificialEnvironment:
    description: MIxS Data that comply with the MimarksS checklist and the MiscellaneousNaturalOrArtificialEnvironment
      Extension
    title: MimarksS combined with MiscellaneousNaturalOrArtificialEnvironment
    in_subset:
      - combination_classes
    is_a: MiscellaneousNaturalOrArtificialEnvironment
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016009
  MimarksSPlantAssociated:
    description: MIxS Data that comply with the MimarksS checklist and the PlantAssociated
      Extension
    title: MimarksS combined with PlantAssociated
    in_subset:
      - combination_classes
    is_a: PlantAssociated
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016010
  MimarksSSediment:
    description: MIxS Data that comply with the MimarksS checklist and the Sediment
      Extension
    title: MimarksS combined with Sediment
    in_subset:
      - combination_classes
    is_a: Sediment
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016011
  MimarksSSoil:
    description: MIxS Data that comply with the MimarksS checklist and the Soil Extension
    title: MimarksS combined with Soil
    in_subset:
      - combination_classes
    is_a: Soil
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016012
  MimarksSSymbiontAssociated:
    description: MIxS Data that comply with the MimarksS checklist and the SymbiontAssociated
      Extension
    title: MimarksS combined with SymbiontAssociated
    in_subset:
      - combination_classes
    is_a: SymbiontAssociated
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016023
  MimarksSWastewaterSludge:
    description: MIxS Data that comply with the MimarksS checklist and the WastewaterSludge
      Extension
    title: MimarksS combined with WastewaterSludge
    in_subset:
      - combination_classes
    is_a: WastewaterSludge
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016013
  MimarksSWater:
    description: MIxS Data that comply with the MimarksS checklist and the Water Extension
    title: MimarksS combined with Water
    in_subset:
      - combination_classes
    is_a: Water
    mixins:
      - MimarksS
    class_uri: MIXS:0010008_0016014
  MimsAgriculture:
    description: MIxS Data that comply with the Mims checklist and the Agriculture
      Extension
    title: Mims combined with Agriculture
    in_subset:
      - combination_classes
    is_a: Agriculture
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016018
  MimsAir:
    description: MIxS Data that comply with the Mims checklist and the Air Extension
    title: Mims combined with Air
    in_subset:
      - combination_classes
    is_a: Air
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016000
  MimsBuiltEnvironment:
    description: MIxS Data that comply with the Mims checklist and the BuiltEnvironment
      Extension
    title: Mims combined with BuiltEnvironment
    in_subset:
      - combination_classes
    is_a: BuiltEnvironment
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016001
  MimsFoodAnimalAndAnimalFeed:
    description: MIxS Data that comply with the Mims checklist and the FoodAnimalAndAnimalFeed
      Extension
    title: Mims combined with FoodAnimalAndAnimalFeed
    in_subset:
      - combination_classes
    is_a: FoodAnimalAndAnimalFeed
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016019
  MimsFoodFarmEnvironment:
    description: MIxS Data that comply with the Mims checklist and the FoodFarmEnvironment
      Extension
    title: Mims combined with FoodFarmEnvironment
    in_subset:
      - combination_classes
    is_a: FoodFarmEnvironment
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016020
  MimsFoodFoodProductionFacility:
    description: MIxS Data that comply with the Mims checklist and the FoodFoodProductionFacility
      Extension
    title: Mims combined with FoodFoodProductionFacility
    in_subset:
      - combination_classes
    is_a: FoodFoodProductionFacility
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016021
  MimsFoodHumanFoods:
    description: MIxS Data that comply with the Mims checklist and the FoodHumanFoods
      Extension
    title: Mims combined with FoodHumanFoods
    in_subset:
      - combination_classes
    is_a: FoodHumanFoods
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016022
  MimsHostAssociated:
    description: MIxS Data that comply with the Mims checklist and the HostAssociated
      Extension
    title: Mims combined with HostAssociated
    in_subset:
      - combination_classes
    is_a: HostAssociated
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016002
  MimsHumanAssociated:
    description: MIxS Data that comply with the Mims checklist and the HumanAssociated
      Extension
    title: Mims combined with HumanAssociated
    in_subset:
      - combination_classes
    is_a: HumanAssociated
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016003
  MimsHumanGut:
    description: MIxS Data that comply with the Mims checklist and the HumanGut Extension
    title: Mims combined with HumanGut
    in_subset:
      - combination_classes
    is_a: HumanGut
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016004
  MimsHumanOral:
    description: MIxS Data that comply with the Mims checklist and the HumanOral Extension
    title: Mims combined with HumanOral
    in_subset:
      - combination_classes
    is_a: HumanOral
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016005
  MimsHumanSkin:
    description: MIxS Data that comply with the Mims checklist and the HumanSkin Extension
    title: Mims combined with HumanSkin
    in_subset:
      - combination_classes
    is_a: HumanSkin
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016006
  MimsHumanVaginal:
    description: MIxS Data that comply with the Mims checklist and the HumanVaginal
      Extension
    title: Mims combined with HumanVaginal
    in_subset:
      - combination_classes
    is_a: HumanVaginal
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016007
  MimsHydrocarbonResourcesCores:
    description: MIxS Data that comply with the Mims checklist and the HydrocarbonResourcesCores
      Extension
    title: Mims combined with HydrocarbonResourcesCores
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesCores
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016015
  MimsHydrocarbonResourcesFluidsSwabs:
    description: MIxS Data that comply with the Mims checklist and the HydrocarbonResourcesFluidsSwabs
      Extension
    title: Mims combined with HydrocarbonResourcesFluidsSwabs
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesFluidsSwabs
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016016
  MimsMicrobialMatBiofilm:
    description: MIxS Data that comply with the Mims checklist and the MicrobialMatBiofilm
      Extension
    title: Mims combined with MicrobialMatBiofilm
    in_subset:
      - combination_classes
    is_a: MicrobialMatBiofilm
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016008
  MimsMiscellaneousNaturalOrArtificialEnvironment:
    description: MIxS Data that comply with the Mims checklist and the MiscellaneousNaturalOrArtificialEnvironment
      Extension
    title: Mims combined with MiscellaneousNaturalOrArtificialEnvironment
    in_subset:
      - combination_classes
    is_a: MiscellaneousNaturalOrArtificialEnvironment
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016009
  MimsPlantAssociated:
    description: MIxS Data that comply with the Mims checklist and the PlantAssociated
      Extension
    title: Mims combined with PlantAssociated
    in_subset:
      - combination_classes
    is_a: PlantAssociated
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016010
  MimsSediment:
    description: MIxS Data that comply with the Mims checklist and the Sediment Extension
    title: Mims combined with Sediment
    in_subset:
      - combination_classes
    is_a: Sediment
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016011
  MimsSoil:
    description: MIxS Data that comply with the Mims checklist and the Soil Extension
    title: Mims combined with Soil
    in_subset:
      - combination_classes
    is_a: Soil
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016012
  MimsSymbiontAssociated:
    description: MIxS Data that comply with the Mims checklist and the SymbiontAssociated
      Extension
    title: Mims combined with SymbiontAssociated
    in_subset:
      - combination_classes
    is_a: SymbiontAssociated
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016023
  MimsWastewaterSludge:
    description: MIxS Data that comply with the Mims checklist and the WastewaterSludge
      Extension
    title: Mims combined with WastewaterSludge
    in_subset:
      - combination_classes
    is_a: WastewaterSludge
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016013
  MimsWater:
    description: MIxS Data that comply with the Mims checklist and the Water Extension
    title: Mims combined with Water
    in_subset:
      - combination_classes
    is_a: Water
    mixins:
      - Mims
    class_uri: MIXS:0010007_0016014
  MisagAgriculture:
    description: MIxS Data that comply with the Misag checklist and the Agriculture
      Extension
    title: Misag combined with Agriculture
    in_subset:
      - combination_classes
    is_a: Agriculture
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016018
  MisagAir:
    description: MIxS Data that comply with the Misag checklist and the Air Extension
    title: Misag combined with Air
    in_subset:
      - combination_classes
    is_a: Air
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016000
  MisagBuiltEnvironment:
    description: MIxS Data that comply with the Misag checklist and the BuiltEnvironment
      Extension
    title: Misag combined with BuiltEnvironment
    in_subset:
      - combination_classes
    is_a: BuiltEnvironment
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016001
  MisagFoodAnimalAndAnimalFeed:
    description: MIxS Data that comply with the Misag checklist and the FoodAnimalAndAnimalFeed
      Extension
    title: Misag combined with FoodAnimalAndAnimalFeed
    in_subset:
      - combination_classes
    is_a: FoodAnimalAndAnimalFeed
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016019
  MisagFoodFarmEnvironment:
    description: MIxS Data that comply with the Misag checklist and the FoodFarmEnvironment
      Extension
    title: Misag combined with FoodFarmEnvironment
    in_subset:
      - combination_classes
    is_a: FoodFarmEnvironment
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016020
  MisagFoodFoodProductionFacility:
    description: MIxS Data that comply with the Misag checklist and the FoodFoodProductionFacility
      Extension
    title: Misag combined with FoodFoodProductionFacility
    in_subset:
      - combination_classes
    is_a: FoodFoodProductionFacility
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016021
  MisagFoodHumanFoods:
    description: MIxS Data that comply with the Misag checklist and the FoodHumanFoods
      Extension
    title: Misag combined with FoodHumanFoods
    in_subset:
      - combination_classes
    is_a: FoodHumanFoods
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016022
  MisagHostAssociated:
    description: MIxS Data that comply with the Misag checklist and the HostAssociated
      Extension
    title: Misag combined with HostAssociated
    in_subset:
      - combination_classes
    is_a: HostAssociated
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016002
  MisagHumanAssociated:
    description: MIxS Data that comply with the Misag checklist and the HumanAssociated
      Extension
    title: Misag combined with HumanAssociated
    in_subset:
      - combination_classes
    is_a: HumanAssociated
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016003
  MisagHumanGut:
    description: MIxS Data that comply with the Misag checklist and the HumanGut Extension
    title: Misag combined with HumanGut
    in_subset:
      - combination_classes
    is_a: HumanGut
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016004
  MisagHumanOral:
    description: MIxS Data that comply with the Misag checklist and the HumanOral
      Extension
    title: Misag combined with HumanOral
    in_subset:
      - combination_classes
    is_a: HumanOral
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016005
  MisagHumanSkin:
    description: MIxS Data that comply with the Misag checklist and the HumanSkin
      Extension
    title: Misag combined with HumanSkin
    in_subset:
      - combination_classes
    is_a: HumanSkin
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016006
  MisagHumanVaginal:
    description: MIxS Data that comply with the Misag checklist and the HumanVaginal
      Extension
    title: Misag combined with HumanVaginal
    in_subset:
      - combination_classes
    is_a: HumanVaginal
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016007
  MisagHydrocarbonResourcesCores:
    description: MIxS Data that comply with the Misag checklist and the HydrocarbonResourcesCores
      Extension
    title: Misag combined with HydrocarbonResourcesCores
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesCores
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016015
  MisagHydrocarbonResourcesFluidsSwabs:
    description: MIxS Data that comply with the Misag checklist and the HydrocarbonResourcesFluidsSwabs
      Extension
    title: Misag combined with HydrocarbonResourcesFluidsSwabs
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesFluidsSwabs
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016016
  MisagMicrobialMatBiofilm:
    description: MIxS Data that comply with the Misag checklist and the MicrobialMatBiofilm
      Extension
    title: Misag combined with MicrobialMatBiofilm
    in_subset:
      - combination_classes
    is_a: MicrobialMatBiofilm
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016008
  MisagMiscellaneousNaturalOrArtificialEnvironment:
    description: MIxS Data that comply with the Misag checklist and the MiscellaneousNaturalOrArtificialEnvironment
      Extension
    title: Misag combined with MiscellaneousNaturalOrArtificialEnvironment
    in_subset:
      - combination_classes
    is_a: MiscellaneousNaturalOrArtificialEnvironment
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016009
  MisagPlantAssociated:
    description: MIxS Data that comply with the Misag checklist and the PlantAssociated
      Extension
    title: Misag combined with PlantAssociated
    in_subset:
      - combination_classes
    is_a: PlantAssociated
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016010
  MisagSediment:
    description: MIxS Data that comply with the Misag checklist and the Sediment Extension
    title: Misag combined with Sediment
    in_subset:
      - combination_classes
    is_a: Sediment
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016011
  MisagSoil:
    description: MIxS Data that comply with the Misag checklist and the Soil Extension
    title: Misag combined with Soil
    in_subset:
      - combination_classes
    is_a: Soil
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016012
  MisagSymbiontAssociated:
    description: MIxS Data that comply with the Misag checklist and the SymbiontAssociated
      Extension
    title: Misag combined with SymbiontAssociated
    in_subset:
      - combination_classes
    is_a: SymbiontAssociated
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016023
  MisagWastewaterSludge:
    description: MIxS Data that comply with the Misag checklist and the WastewaterSludge
      Extension
    title: Misag combined with WastewaterSludge
    in_subset:
      - combination_classes
    is_a: WastewaterSludge
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016013
  MisagWater:
    description: MIxS Data that comply with the Misag checklist and the Water Extension
    title: Misag combined with Water
    in_subset:
      - combination_classes
    is_a: Water
    mixins:
      - Misag
    class_uri: MIXS:0010010_0016014
  MiuvigAgriculture:
    description: MIxS Data that comply with the Miuvig checklist and the Agriculture
      Extension
    title: Miuvig combined with Agriculture
    in_subset:
      - combination_classes
    is_a: Agriculture
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016018
  MiuvigAir:
    description: MIxS Data that comply with the Miuvig checklist and the Air Extension
    title: Miuvig combined with Air
    in_subset:
      - combination_classes
    is_a: Air
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016000
  MiuvigBuiltEnvironment:
    description: MIxS Data that comply with the Miuvig checklist and the BuiltEnvironment
      Extension
    title: Miuvig combined with BuiltEnvironment
    in_subset:
      - combination_classes
    is_a: BuiltEnvironment
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016001
  MiuvigFoodAnimalAndAnimalFeed:
    description: MIxS Data that comply with the Miuvig checklist and the FoodAnimalAndAnimalFeed
      Extension
    title: Miuvig combined with FoodAnimalAndAnimalFeed
    in_subset:
      - combination_classes
    is_a: FoodAnimalAndAnimalFeed
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016019
  MiuvigFoodFarmEnvironment:
    description: MIxS Data that comply with the Miuvig checklist and the FoodFarmEnvironment
      Extension
    title: Miuvig combined with FoodFarmEnvironment
    in_subset:
      - combination_classes
    is_a: FoodFarmEnvironment
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016020
  MiuvigFoodFoodProductionFacility:
    description: MIxS Data that comply with the Miuvig checklist and the FoodFoodProductionFacility
      Extension
    title: Miuvig combined with FoodFoodProductionFacility
    in_subset:
      - combination_classes
    is_a: FoodFoodProductionFacility
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016021
  MiuvigFoodHumanFoods:
    description: MIxS Data that comply with the Miuvig checklist and the FoodHumanFoods
      Extension
    title: Miuvig combined with FoodHumanFoods
    in_subset:
      - combination_classes
    is_a: FoodHumanFoods
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016022
  MiuvigHostAssociated:
    description: MIxS Data that comply with the Miuvig checklist and the HostAssociated
      Extension
    title: Miuvig combined with HostAssociated
    in_subset:
      - combination_classes
    is_a: HostAssociated
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016002
  MiuvigHumanAssociated:
    description: MIxS Data that comply with the Miuvig checklist and the HumanAssociated
      Extension
    title: Miuvig combined with HumanAssociated
    in_subset:
      - combination_classes
    is_a: HumanAssociated
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016003
  MiuvigHumanGut:
    description: MIxS Data that comply with the Miuvig checklist and the HumanGut
      Extension
    title: Miuvig combined with HumanGut
    in_subset:
      - combination_classes
    is_a: HumanGut
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016004
  MiuvigHumanOral:
    description: MIxS Data that comply with the Miuvig checklist and the HumanOral
      Extension
    title: Miuvig combined with HumanOral
    in_subset:
      - combination_classes
    is_a: HumanOral
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016005
  MiuvigHumanSkin:
    description: MIxS Data that comply with the Miuvig checklist and the HumanSkin
      Extension
    title: Miuvig combined with HumanSkin
    in_subset:
      - combination_classes
    is_a: HumanSkin
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016006
  MiuvigHumanVaginal:
    description: MIxS Data that comply with the Miuvig checklist and the HumanVaginal
      Extension
    title: Miuvig combined with HumanVaginal
    in_subset:
      - combination_classes
    is_a: HumanVaginal
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016007
  MiuvigHydrocarbonResourcesCores:
    description: MIxS Data that comply with the Miuvig checklist and the HydrocarbonResourcesCores
      Extension
    title: Miuvig combined with HydrocarbonResourcesCores
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesCores
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016015
  MiuvigHydrocarbonResourcesFluidsSwabs:
    description: MIxS Data that comply with the Miuvig checklist and the HydrocarbonResourcesFluidsSwabs
      Extension
    title: Miuvig combined with HydrocarbonResourcesFluidsSwabs
    in_subset:
      - combination_classes
    is_a: HydrocarbonResourcesFluidsSwabs
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016016
  MiuvigMicrobialMatBiofilm:
    description: MIxS Data that comply with the Miuvig checklist and the MicrobialMatBiofilm
      Extension
    title: Miuvig combined with MicrobialMatBiofilm
    in_subset:
      - combination_classes
    is_a: MicrobialMatBiofilm
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016008
  MiuvigMiscellaneousNaturalOrArtificialEnvironment:
    description: MIxS Data that comply with the Miuvig checklist and the MiscellaneousNaturalOrArtificialEnvironment
      Extension
    title: Miuvig combined with MiscellaneousNaturalOrArtificialEnvironment
    in_subset:
      - combination_classes
    is_a: MiscellaneousNaturalOrArtificialEnvironment
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016009
  MiuvigPlantAssociated:
    description: MIxS Data that comply with the Miuvig checklist and the PlantAssociated
      Extension
    title: Miuvig combined with PlantAssociated
    in_subset:
      - combination_classes
    is_a: PlantAssociated
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016010
  MiuvigSediment:
    description: MIxS Data that comply with the Miuvig checklist and the Sediment
      Extension
    title: Miuvig combined with Sediment
    in_subset:
      - combination_classes
    is_a: Sediment
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016011
  MiuvigSoil:
    description: MIxS Data that comply with the Miuvig checklist and the Soil Extension
    title: Miuvig combined with Soil
    in_subset:
      - combination_classes
    is_a: Soil
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016012
  MiuvigSymbiontAssociated:
    description: MIxS Data that comply with the Miuvig checklist and the SymbiontAssociated
      Extension
    title: Miuvig combined with SymbiontAssociated
    in_subset:
      - combination_classes
    is_a: SymbiontAssociated
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016023
  MiuvigWastewaterSludge:
    description: MIxS Data that comply with the Miuvig checklist and the WastewaterSludge
      Extension
    title: Miuvig combined with WastewaterSludge
    in_subset:
      - combination_classes
    is_a: WastewaterSludge
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016013
  MiuvigWater:
    description: MIxS Data that comply with the Miuvig checklist and the Water Extension
    title: Miuvig combined with Water
    in_subset:
      - combination_classes
    is_a: Water
    mixins:
      - Miuvig
    class_uri: MIXS:0010012_0016014
settings:
  agrochemical_name: ".*"
  amount: '[-+]?[0-9]*\.?[0-9]+'
  add_recov_methods: 'Water Injection|Dump Flood|Gas Injection|Wag Immiscible Injection|Polymer Addition|Surfactant Addition|Not Applicable|other'
  DOI: '^doi:10.\d{2,9}/.*$'
  NCBItaxon_id: NCBITaxon:\d+
  PMID: ^PMID:\d+$
  URL: ^https?:\/\/(?:www\.)?[-a-zA-Z0-9@:%._\+~#=]{1,256}\.[a-zA-Z0-9()]{1,6}\b(?:[-a-zA-Z0-9()@:%_\+.~#?&\/=]*)$
  adapter: '[ACGTRKSYMWBHDVN]+'
  adapter_A_DNA_sequence: '[ACGTRKSYMWBHDVN]+'
  adapter_B_DNA_sequence: '[ACGTRKSYMWBHDVN]+'
  ambiguous_nucleotides: '[ACGTRKSYMWBHDVN]+'
  country: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)
  date_time_stamp: '(\d{4})(-(0[1-9]|1[0-2])(-(0[1-9]|[12]\d|3[01])(T([01]\d|2[0-3]):([0-5]\d):([0-5]\d)(\.\d+)?(Z|([+-][01]\d:[0-5]\d))?)?)?)?$'
  duration: P(?:(?:\d+D|\d+M(?:\d+D)?|\d+Y(?:\d+M(?:\d+D)?)?)(?:T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S))?|T(?:\d+H(?:\d+M(?:\d+S)?)?|\d+M(?:\d+S)?|\d+S)|\d+W)
  float: '[-+]?[0-9]*\.?[0-9]+'
  integer: '[1-9][0-9]*'
  lat: (-?((?:[0-8]?[0-9](?:\.\d{0,8})?)|90))
  lon: -?[0-9]+(?:\.[0-9]{0,8})?$|^-?(1[0-7]{1,2})
  name: '.*'
  parameters: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)
  particulate_matter_name: '.*'
  region: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)
  room_name: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)
  room_number: '[1-9][0-9]*'
  scientific_float: '[-+]?[0-9]*\.?[0-9]+(?:[eE][-+]?[0-9]+)?'
  software: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)
  specific_location: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)
  storage_condition_type: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)
  termID: '[a-zA-Z]{2,}:[a-zA-Z0-9]\d+'
  termLabel: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)
  text: '.*'
  unit: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)
  version: ([^\s-]{1,2}|[^\s-]+.+[^\s-]+)