Slot: chimera check software (chimera_check)

Tool(s) used for chimera checking, including version number and parameters, to discover and remove chimeric sequences. A chimeric sequence is comprised of two or more phylogenetically distinct parent sequences.

URI: MIXS:0000052

Inheritance

• sequencing_field
  • chimera_check

Applicable Classes

Name	Description	Modifies Slot
OmicsProcessing	The methods and processes used to generate omics data from a biosample or org...	no
Biosample	Biological source material which can be characterized by an experiment	no

Properties

• Range: TextValue

Aliases

• chimera check software

Examples

Value
uchime;v4.1;default parameters

Identifier and Mapping Information

Annotations

property	value
expected_value	name and version of software, parameters used

Schema Source

• from schema: https://w3id.org/nmdc/nmdc

LinkML Source

name: chimera_check
annotations:
  expected_value:
    tag: expected_value
    value: name and version of software, parameters used
description: Tool(s) used for chimera checking, including version number and parameters,
  to discover and remove chimeric sequences. A chimeric sequence is comprised of two
  or more phylogenetically distinct parent sequences.
title: chimera check software
examples:
- value: uchime;v4.1;default parameters
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- chimera check software
rank: 1000
is_a: sequencing field
string_serialization: '{software};{version};{parameters}'
slot_uri: MIXS:0000052
multivalued: false
alias: chimera_check
domain_of:
- Biosample
- OmicsProcessing
range: TextValue