@prefix : . @prefix dc: . @prefix obo: . @prefix owl: . @prefix rdf: . @prefix sco: . @prefix xml: . @prefix xsd: . @prefix rdfs: . @prefix skos: . @prefix sumso: . @prefix terms: . @prefix oboInOwl: . @prefix AnnotationVocabulary: . @prefix CommonCoreOntologies: . @base . rdf:type owl:Ontology ; owl:versionIRI sumso:v1.0.1 ; terms:creator "Giorgio A. Ubbiali" ; terms:description """SuMSO is a domain of ontology, representing meat systems sustainability. Currently, this resource provides the core ontological module of SuMSO that deals with the essential architectural features of a sustainable meat system. This ontological module addresses meat in a broad, genuine sense focusing on cow-derived meat as a starting use-case example. It does not address features related to fish, insects, novel meats, and plant-based meats. The SuMSO core ontological module aims to be the starting basis on which to extend SuMSO to more comprehensively represent meat systems sustainability."""@en ; terms:license "https://creativecommons.org/licenses/by/4.0/" ; terms:title "Sustainable Meat Systems Ontology (SuMSO)"@en ; oboInOwl:hasVersion "V1.0.1." ; rdfs:seeAlso "https://air.unimi.it/handle/2434/1161515" , "https://doi.org/10.1002/sd.70562" ; owl:priorVersion "https://github.com/gioUbbiali/Sustainable-Meat-Systems-Ontology/releases/tag/v1.0.0" ; owl:versionInfo "2026-02-28" ; skos:note """Repository: https://www.w3id.org/sumso/repo Documentation webpage: https://www.w3id.org/sumso/docs"""@en , "The most recent version of this file is available on GitHub at the following link: https://www.w3id.org/sumso" . ################################################################# # Annotation properties ################################################################# ### http://purl.obolibrary.org/obo/BFO_0000179 obo:BFO_0000179 rdf:type owl:AnnotationProperty ; obo:IAO_0000115 "Relates an entity in the ontology to the name of the variable that is used to represent it in the code that generates the BFO OWL file from the lispy specification."@en ; obo:IAO_0000232 "Really of interest to developers only"@en ; rdfs:label "BFO OWL specification label"@en ; rdfs:subPropertyOf rdfs:label . ### http://purl.obolibrary.org/obo/BFO_0000180 obo:BFO_0000180 rdf:type owl:AnnotationProperty ; obo:IAO_0000115 "Relates an entity in the ontology to the term that is used to represent it in the the CLIF specification of BFO2"@en ; obo:IAO_0000119 "Person:Alan Ruttenberg" ; obo:IAO_0000232 "Really of interest to developers only"@en ; rdfs:label "BFO CLIF specification label"@en ; rdfs:subPropertyOf rdfs:label . ### http://purl.obolibrary.org/obo/IAO_0000111 obo:IAO_0000111 rdf:type owl:AnnotationProperty ; obo:IAO_0000111 "editor preferred label"@en , "editor preferred term"@en , "编辑首选术语"@zh , "编辑首选标签"@zh , "editor preferred label" , "editor preferred term" , "editor preferred term~editor preferred label" ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)"@en , "对于一类或属性的简洁的、有意义的、与人类友好的名称由本体开发商首选。 (美国英语)"@zh ; obo:IAO_0000117 "PERSON:Daniel Schober"@en ; obo:IAO_0000119 "GROUP:OBI:"@en ; rdfs:isDefinedBy obo:iao.owl ; rdfs:label "editor preferred label"@en , "editor preferred term"@en , "editor preferred term~editor preferred label"@en , "编辑首选术语"@zh , "编辑首选标签"@zh , "editor preferred label" , "editor preferred term" , "editor preferred term~editor preferred label" , "编辑首选术语" , "编辑首选术语~编辑首选标签" , "编辑首选标签" . ### http://purl.obolibrary.org/obo/IAO_0000112 obo:IAO_0000112 rdf:type owl:AnnotationProperty ; obo:IAO_0000111 "example of usage"@en ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold."@en ; obo:IAO_0000117 "PERSON:Daniel Schober"@en ; obo:IAO_0000119 "GROUP:OBI:"@en ; oboInOwl:hasDbXref "IAO:0000112" ; oboInOwl:hasOBONamespace "uberon" ; oboInOwl:id "example_of_usage" ; oboInOwl:is_metadata_tag "true"^^xsd:boolean ; oboInOwl:shorthand "example_of_usage" ; rdfs:isDefinedBy obo:iao.owl ; rdfs:label "example of usage"@en , "example of usage" . ### http://purl.obolibrary.org/obo/IAO_0000114 obo:IAO_0000114 rdf:type owl:AnnotationProperty ; obo:IAO_0000111 "has curation status"@en , "有管理状态"@zh ; obo:IAO_0000117 "PERSON:Alan Ruttenberg"@en , "PERSON:Bill Bug"@en , "PERSON:Melanie Courtot"@en ; obo:IAO_0000119 "OBI_0000281"@en ; rdfs:isDefinedBy obo:iao.owl ; rdfs:label "has curation status"@en , "有管理状态"@zh , "has curation status" , "有管理状态" . ### http://purl.obolibrary.org/obo/IAO_0000115 obo:IAO_0000115 rdf:type owl:AnnotationProperty ; obo:IAO_0000111 "definition"@en , "textual definition"@en , "定义"@zh , "definition" , "textual definition" ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "OBI的官方定义,解释类或属性的含义。应该是亚里士多德式的,形式化和规范化的。 可以通过口语定义进行扩充。"@zh , "The official OBI definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions."@en , "The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions."@en , "官方的定义,解释类或属性的含义。应该是亚里士多德式的,形式化和规范化的。 可以通过口语定义进行扩充。"@zh , "A property representing the English language definitions of what NCI means by the concept. They may also include information about the definition's source and attribution in a form that can easily be interpreted by software." , "The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions." ; obo:IAO_0000116 """2012-04-05: Barry Smith OBI的官方定义解释了一个类或属性的含义:'应该是亚里士多德式的,形式化和规范化的。可以用口语定义'是糟糕的。 您能解决这样的问题吗? 解释关于类或属性的表达含义的必要和充分条件的陈述。 Alan Ruttenberg 您提出的定义是一个合理的备选,除非它很常见,没有给出必要和充分的条件。大多数情况下它们是必要的,偶尔是必要的,充分的或者仅仅仅充分的。它们通常使用不是自己定义的术语,因此它们实际上不能通过这些标准进行评估。 关于拟议定义的具体内容: 我们没有“含义”,或“表达”或“属性”的定义。对于在预期意义上的“参考”,我认为我们使用术语“指示”。对于'表达',我认为我们和你的意思是符号,或标识符。对于“含义”,它不同于类和属性。对于类,我们希望文档能够让读者确定一个实体是否是该类的实例。对于属性,让我们的目标读者决定,给定一对潜在的关系,判断关系成立的断言正确与否。 “目标读者”部分表明我们也指定了我们期望的能够理解定义的人,并且概括了人类和计算机读者以包含文本和逻辑定义。 就我个人而言,我更愿意削弱对文档的定义,并指出什么是可取的。 我们还有一个悬而未决的问题,就是如何针对不同的受众定位不同的定义。临床读者阅读chebi需要来自受过化学训练的受众的不同类型的定义文档/定义,同样需要一个适合本体工作者的定义。 """@en , """2012-04-05: Barry Smith The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. Can you fix to something like: A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. Alan Ruttenberg Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. On the specifics of the proposed definition: We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with."""@en , """2012-04-05: Barry Smith The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible. Can you fix to something like: A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property. Alan Ruttenberg Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. On the specifics of the proposed definition: We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. """@en ; obo:IAO_0000117 "PERSON:Daniel Schober"@en ; obo:IAO_0000119 "GROUP:OBI:"@en ; oboInOwl:hasExactSynonym "DEFINITION" ; rdfs:isDefinedBy obo:iao.owl ; rdfs:label "definition"@en , "textual definition"@en , "定义"@zh , "文本定义"@zh , "definition" , "textual definition" , "定义" , "文本定义" . ### http://purl.obolibrary.org/obo/IAO_0000116 obo:IAO_0000116 rdf:type owl:AnnotationProperty ; obo:IAO_0000111 "editor note"@en , "编者注"@zh ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology."@en , "管理者注释用于其编辑器。它可能不包含在本体的出版版本中,所以它应该不包含最终用户了解本体所需的信息。"@zh ; obo:IAO_0000117 "PERSON:Daniel Schober"@en ; obo:IAO_0000119 "GROUP:OBI:"@en , "GROUP:OBI:"@en ; obo:hasDbXref "IAO:0000116"@en , "IAO:0000116" ; obo:hasOBONamespace "uberon"@en , "uberon" ; obo:id "editor_note"@en , "编辑_注释"@zh , "editor_note" ; obo:is_metadata_tag "true"^^xsd:boolean ; obo:shorthand "editor_note"@en , "编辑_注释"@zh , "editor_note" ; oboInOwl:hasDbXref "IAO:0000116"@en , "IAO:0000116" ; oboInOwl:hasOBONamespace "uberon"@en , "uberon" ; oboInOwl:id "editor_note"@en , "editor_note" ; oboInOwl:is_metadata_tag "true"^^xsd:boolean , 1 ; oboInOwl:shorthand "editor_note"@en , "editor_note" ; rdfs:isDefinedBy obo:iao.owl ; rdfs:label "editor note"@en , "编者注"@zh , "editor note" , "编者注" . ### http://purl.obolibrary.org/obo/IAO_0000117 obo:IAO_0000117 rdf:type owl:AnnotationProperty ; obo:IAO_0000111 "definition editor"@en , "term editor"@en , "术语编辑者"@zh ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "Name of editor entering the definition in the file. The definition editor is a point of contact for information regarding the term. The definition editor may be, but is not always, the author of the definition, which may have been worked upon by several people"@en , "Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people"@en , "输入文件中术语编辑者的名称。术语编辑者是有关术语的信息交汇点。术语编辑者可以是,但并不总是,定义的作者,这可能是由几个人完成"@zh ; obo:IAO_0000116 "20110707, MC: label update to term editor and definition modified accordingly. See http://code.google.com/p/information-artifact-ontology/issues/detail?id=115."@en , "20110707, MC: label update to term editor and definition modified accordingly. See https://github.com/information-artifact-ontology/IAO/issues/115."@en , "20110707,MC:术语编辑和定义进行相应的修改。见http://code.google.com/p/information-artifact-ontology/issues/detail?id=115。"@zh ; obo:IAO_0000117 "PERSON:Daniel Schober"@en ; obo:IAO_0000119 "GROUP:OBI:"@en ; rdfs:isDefinedBy obo:iao.owl ; rdfs:label "definition editor"@en , "term editor"@en , "术语编辑者"@zh , "definition editor" , "term editor" , "术语编辑者" . ### http://purl.obolibrary.org/obo/IAO_0000118 obo:IAO_0000118 rdf:type owl:AnnotationProperty ; obo:IAO_0000111 "alternative label"@en ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "A label for a class or property that can be used to refer to the class or property instead of the preferred rdfs:label. Alternative labels should be used to indicate community- or context-specific labels, abbreviations, shorthand forms and the like."@en ; obo:IAO_0000117 "PERSON:Daniel Schober"@en , "OBO Operations committee" ; obo:IAO_0000119 "GROUP:OBI:"@en ; rdfs:comment "Consider re-defing to: An alternative name for a class or property which can mean the same thing as the preferred name (semantically equivalent, narrow, broad or related)." ; rdfs:label "alternative label"@en . ### http://purl.obolibrary.org/obo/IAO_0000119 obo:IAO_0000119 rdf:type owl:AnnotationProperty ; obo:IAO_0000111 "definition source"@en , "定义来源"@zh ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007"@en , "formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007"@en , "正式引用,例如在外部数据库中的标识符,用于表示/定义的属性源(S)。自由文本表示/为定义属性源(S)。实例:在2007年1月31日的作者姓名,URI,MeSH术语C04,PUBMEDID,维基uri"@zh ; obo:IAO_0000117 "PERSON:Daniel Schober"@en ; obo:IAO_0000119 "Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w"@en , "GROUP:OBI:"@en , "论OBO-讨论邮件-列表,请参阅http://bit.ly/hgm99w"@zh , "Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w" ; rdfs:isDefinedBy obo:iao.owl ; rdfs:label "definition source"@en , "定义来源"@zh , "definition source" , "定义来源" . ### http://purl.obolibrary.org/obo/IAO_0000232 obo:IAO_0000232 rdf:type owl:AnnotationProperty ; obo:IAO_0000111 "curator note"@en ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "An administrative note of use for a curator but of no use for a user"@en ; obo:IAO_0000117 "PERSON:Alan Ruttenberg"@en ; rdfs:isDefinedBy obo:iao.owl ; rdfs:label "curator note"@en . ### http://purl.obolibrary.org/obo/IAO_0000233 obo:IAO_0000233 rdf:type owl:AnnotationProperty ; obo:IAO_0000111 "term tracker item"@en ; obo:IAO_0000112 "the URI for an OBI Terms ticket at sourceforge, such as https://sourceforge.net/p/obi/obi-terms/772/"@en ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "An IRI or similar locator for a request or discussion of an ontology term."@en ; obo:IAO_0000117 "Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg"@en ; obo:IAO_0000119 "Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg"@en ; oboInOwl:hasDbXref "IAO:0000233" ; oboInOwl:hasOBONamespace "uberon" ; oboInOwl:id "term_tracker_item" ; oboInOwl:is_metadata_tag "true"^^xsd:boolean ; oboInOwl:shorthand "term_tracker_item" ; rdfs:comment "The 'tracker item' can associate a tracker with a specific ontology term."@en ; rdfs:label "term tracker item"@en , "term tracker item" . ### http://purl.obolibrary.org/obo/IAO_0000412 obo:IAO_0000412 rdf:type owl:AnnotationProperty ; obo:IAO_0000111 "imported from"@en ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "For external terms/classes, the ontology from which the term was imported"@en ; obo:IAO_0000117 "PERSON:Alan Ruttenberg"@en , "PERSON:Melanie Courtot"@en ; obo:IAO_0000119 "GROUP:OBI:"@en ; rdfs:isDefinedBy obo:iao.owl ; rdfs:label "imported from"@en . ### http://purl.obolibrary.org/obo/IAO_0000424 obo:IAO_0000424 rdf:type owl:AnnotationProperty ; obo:IAO_0000111 "expand expression to"@en ; obo:IAO_0000112 """ObjectProperty: RO_0002104 Label: has plasma membrane part Annotations: IAO_0000424 \"http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.org/obo/owl/GO#GO_0005886 and http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)\" """@en ; obo:IAO_0000115 "A macro expansion tag applied to an object property (or possibly a data property) which can be used by a macro-expansion engine to generate more complex expressions from simpler ones"@en ; obo:IAO_0000117 "Chris Mungall"@en ; rdfs:label "expand expression to"@en . ### http://purl.obolibrary.org/obo/IAO_0000425 obo:IAO_0000425 rdf:type owl:AnnotationProperty ; obo:IAO_0000111 "expand assertion to"@en ; obo:IAO_0000112 """ObjectProperty: RO??? Label: spatially disjoint from Annotations: expand_assertion_to \"DisjointClasses: (http://purl.obolibrary.org/obo/BFO_0000051 some ?X) (http://purl.obolibrary.org/obo/BFO_0000051 some ?Y)\" """@en ; obo:IAO_0000115 "A macro expansion tag applied to an annotation property which can be expanded into a more detailed axiom."@en ; obo:IAO_0000117 "Chris Mungall"@en ; rdfs:label "expand assertion to"@en , "expand assertion to" . ### http://purl.obolibrary.org/obo/IAO_0000589 obo:IAO_0000589 rdf:type owl:AnnotationProperty ; obo:IAO_0000111 "OBO foundry unique label"@en ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "An alternative name for a class or property which is unique across the OBO Foundry."@en ; obo:IAO_0000116 "The intended usage of that property is as follow: OBO foundry unique labels are automatically generated based on regular expressions provided by each ontology, so that SO could specify unique label = 'sequence ' + [label], etc. , MA could specify 'mouse + [label]' etc. Upon importing terms, ontology developers can choose to use the 'OBO foundry unique label' for an imported term or not. The same applies to tools ."@en ; obo:IAO_0000117 "PERSON:Alan Ruttenberg"@en , "PERSON:Bjoern Peters"@en , "PERSON:Chris Mungall"@en , "PERSON:Melanie Courtot"@en ; obo:IAO_0000119 "GROUP:OBO Foundry "@en . ### http://purl.obolibrary.org/obo/IAO_0000600 obo:IAO_0000600 rdf:type owl:AnnotationProperty ; obo:IAO_0000111 "elucidation"@en ; obo:IAO_0000117 "person:Alan Ruttenberg"@en ; obo:IAO_0000119 "Person:Barry Smith"@en ; obo:IAO_0000600 "Primitive terms in a highest-level ontology such as BFO are terms which are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms"@en ; rdfs:isDefinedBy obo:iao.owl ; rdfs:label "elucidation"@en . ### http://purl.obolibrary.org/obo/IAO_0000601 obo:IAO_0000601 rdf:type owl:AnnotationProperty ; obo:IAO_0000111 "has associated axiom(nl)"@en ; obo:IAO_0000117 "Person:Alan Ruttenberg"@en ; obo:IAO_0000119 "Person:Alan Ruttenberg"@en ; obo:IAO_0000600 "An axiom associated with a term expressed using natural language"@en ; rdfs:isDefinedBy obo:iao.owl ; rdfs:label "has associated axiom(nl)"@en . ### http://purl.obolibrary.org/obo/IAO_0000602 obo:IAO_0000602 rdf:type owl:AnnotationProperty ; obo:IAO_0000111 "has associated axiom(fol)"@en ; obo:IAO_0000117 "Person:Alan Ruttenberg"@en ; obo:IAO_0000119 "Person:Alan Ruttenberg"@en ; obo:IAO_0000600 "An axiom expressed in first order logic using CLIF syntax"@en ; rdfs:isDefinedBy obo:iao.owl ; rdfs:label "has associated axiom(fol)"@en . ### http://purl.obolibrary.org/obo/IAO_0010000 obo:IAO_0010000 rdf:type owl:AnnotationProperty ; obo:IAO_0000111 "has axiom id"@en ; obo:IAO_0000117 "Person:Alan Ruttenberg"@en ; obo:IAO_0000119 "Person:Alan Ruttenberg"@en ; obo:IAO_0000600 "A URI that is intended to be unique label for an axiom used for tracking change to the ontology. For an axiom expressed in different languages, each expression is given the same URI"@en . ### http://purl.obolibrary.org/obo/OMO_0002000 obo:OMO_0002000 rdf:type owl:AnnotationProperty ; obo:IAO_0000112 """'part disjoint with' 'defined by construct' \"\"\" PREFIX owl: PREFIX : . ### http://purl.obolibrary.org/obo/RO_0001900 obo:RO_0001900 rdf:type owl:AnnotationProperty ; obo:IAO_0000115 "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context." ; rdfs:label "temporal interpretation" ; rdfs:seeAlso ; rdfs:subPropertyOf obo:RO_0002422 . ### http://purl.obolibrary.org/obo/RO_0002161 obo:RO_0002161 rdf:type owl:AnnotationProperty ; obo:IAO_0000112 "tooth SubClassOf 'never in taxon' value 'Aves'" ; obo:IAO_0000115 "S never_in_taxon T iff: S SubClassOf in_taxon only not T." , "x never in taxon T if and only if T is a class, and x does not instantiate the class expression \"in taxon some T\". Note that this is a shortcut relation, and should be used as a hasValue restriction in OWL." ; obo:IAO_0000117 ; obo:IAO_0000119 , ; obo:IAO_0000425 "Class: EquivalentTo: ?X and (RO_0002162 some ?Y)" , "Class: ?X DisjointWith: RO_0002162 some ?Y " ; obo:OMO_0002000 """PREFIX rdfs: PREFIX owl: PREFIX in_taxon: PREFIX never_in_taxon: CONSTRUCT { in_taxon: a owl:ObjectProperty . a owl:Restriction ; owl:onProperty in_taxon: ; owl:someValuesFrom ?taxon ] . ?x rdfs:subClassOf [ a owl:Restriction ; owl:onProperty in_taxon: ; owl:someValuesFrom [ a owl:Class ; owl:complementOf ?taxon ] ] . } WHERE { ?x never_in_taxon: ?taxon . }""" ; oboInOwl:hasDbXref "RO:0002161" ; oboInOwl:hasOBONamespace "uberon" ; oboInOwl:id "never_in_taxon" ; oboInOwl:is_class_level "true"^^xsd:boolean ; oboInOwl:is_metadata_tag "true"^^xsd:boolean ; oboInOwl:shorthand "never_in_taxon" ; rdfs:label "never in taxon" , "never_in_taxon" ; rdfs:seeAlso . ### http://purl.obolibrary.org/obo/RO_0002175 obo:RO_0002175 rdf:type owl:AnnotationProperty ; obo:IAO_0000115 "S present_in_taxon T if some instance of T has some S. This does not means that all instances of T have an S - it may only be certain life stages or sexes that have S" , "S present_in_taxon T if some instance of T has some S. This does not means that all instances of T have an S - it may only be certain life stages or sexes that have S." ; obo:IAO_0000117 ; obo:IAO_0000119 ; obo:OMO_0002000 """PREFIX rdfs: PREFIX owl: PREFIX in_taxon: PREFIX present_in_taxon: CONSTRUCT { in_taxon: a owl:ObjectProperty . ?witness rdfs:label ?label . ?witness rdfs:subClassOf ?x . ?witness rdfs:subClassOf [ a owl:Restriction ; owl:onProperty in_taxon: ; owl:someValuesFrom ?taxon ] . } WHERE { ?x present_in_taxon: ?taxon . BIND(IRI(CONCAT( \"http://purl.obolibrary.org/obo/RO_0002175#\", MD5(STR(?x)), \"-\", MD5(STR(?taxon)) )) as ?witness) BIND(CONCAT(STR(?x), \" in taxon \", STR(?taxon)) AS ?label) }""" ; oboInOwl:hasDbXref "RO:0002175" ; oboInOwl:hasExactSynonym "applicable for taxon" ; oboInOwl:hasOBONamespace "uberon" ; oboInOwl:id "present_in_taxon" ; oboInOwl:is_class_level "true"^^xsd:boolean ; oboInOwl:is_metadata_tag "true"^^xsd:boolean ; oboInOwl:shorthand "present_in_taxon" ; rdfs:comment "The SPARQL expansion for this relation introduces new named classes into the ontology. For this reason it is likely that the expansion should only be performed during a QC pipeline; the expanded output should usually not be included in a published version of the ontology." ; rdfs:label "present in taxon"@en , "present_in_taxon" ; rdfs:seeAlso . ### http://purl.obolibrary.org/obo/RO_0002416 obo:RO_0002416 rdf:type owl:AnnotationProperty ; obo:IAO_0000115 "An assertion that involves at least one OWL object that is intended to be expanded into one or more logical axioms. The logical expansion can yield axioms expressed using any formal logical system, including, but not limited to OWL2-DL." ; rdfs:label "logical macro assertion"@en ; rdfs:seeAlso "http://purl.obolibrary.org/obo/ro/docs/shortcut-relations/"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0002421 obo:RO_0002421 rdf:type owl:AnnotationProperty ; obo:IAO_0000115 "A logical macro assertion whose domain is an IRI for a property" ; rdfs:label "logical macro assertion on a property"@en ; rdfs:subPropertyOf obo:RO_0002416 . ### http://purl.obolibrary.org/obo/RO_0002422 obo:RO_0002422 rdf:type owl:AnnotationProperty ; obo:IAO_0000115 "Used to annotate object properties to describe a logical meta-property or characteristic of the object property." ; rdfs:label "logical macro assertion on an object property"@en ; rdfs:subPropertyOf obo:RO_0002421 . ### http://purl.obolibrary.org/obo/RO_0002575 obo:RO_0002575 rdf:type owl:AnnotationProperty ; obo:IAO_0000115 "relation p is the direct form of relation q iff p is a subPropertyOf q, p does not have the Transitive characteristic, q does have the Transitive characteristic, and for all x, y: x q y -> exists z1, z2, ..., zn such that x p z1 ... z2n y" ; obo:IAO_0000116 """The general property hierarchy is: \"directly P\" SubPropertyOf \"P\" Transitive(P) Where we have an annotation assertion \"directly P\" \"is direct form of\" \"P\"""" . ### http://purl.obolibrary.org/obo/RO_0002579 obo:RO_0002579 rdf:type owl:AnnotationProperty ; obo:IAO_0000115 "relation p is the indirect form of relation q iff p is a subPropertyOf q, and there exists some p' such that p' is the direct form of q, p' o p' -> p, and forall x,y : x q y -> either (1) x p y or (2) x p' y" . ### http://purl.obolibrary.org/obo/RO_0004049 obo:RO_0004049 rdf:type owl:AnnotationProperty . ### http://purl.obolibrary.org/obo/RO_0004050 obo:RO_0004050 rdf:type owl:AnnotationProperty . ### http://purl.obolibrary.org/obo/UBPROP_0000001 obo:UBPROP_0000001 rdf:type owl:AnnotationProperty ; obo:IAO_0000115 "An alternate textual definition for a class taken unmodified from an external source. This definition may have been used to derive a generalized definition for the new class." ; oboInOwl:hasDbXref "UBPROP:0000001" ; oboInOwl:hasOBONamespace "uberon" ; oboInOwl:id "external_definition" ; oboInOwl:is_metadata_tag "true"^^xsd:boolean ; oboInOwl:shorthand "external_definition" ; rdfs:comment "This annotation property may be replaced with an annotation property from an external ontology such as IAO" ; rdfs:label "external_definition" . ### http://purl.obolibrary.org/obo/hasDbXref obo:hasDbXref rdf:type owl:AnnotationProperty . ### http://purl.obolibrary.org/obo/hasOBONamespace obo:hasOBONamespace rdf:type owl:AnnotationProperty . ### http://purl.obolibrary.org/obo/id obo:id rdf:type owl:AnnotationProperty . ### http://purl.obolibrary.org/obo/is_metadata_tag obo:is_metadata_tag rdf:type owl:AnnotationProperty . ### http://purl.obolibrary.org/obo/shorthand obo:shorthand rdf:type owl:AnnotationProperty . ### http://purl.obolibrary.org/obo/ncbitaxon#has_rank rdf:type owl:AnnotationProperty ; obo:IAO_0000115 "A metadata relation between a class and its taxonomic rank (eg species, family)" ; oboInOwl:hasOBONamespace "ncbi_taxonomy" ; rdfs:comment "This is an abstract class for use with the NCBI taxonomy to name the depth of the node within the tree. The link between the node term and the rank is only visible if you are using an obo 1.3 aware browser/editor; otherwise this can be ignored" ; rdfs:label "has_rank" . ### http://purl.org/dc/elements/1.1/contributor dc:contributor rdf:type owl:AnnotationProperty . ### http://purl.org/dc/elements/1.1/creator dc:creator rdf:type owl:AnnotationProperty . ### http://purl.org/dc/elements/1.1/identifier dc:identifier rdf:type owl:AnnotationProperty . ### http://purl.org/dc/elements/1.1/license dc:license rdf:type owl:AnnotationProperty . ### http://purl.org/dc/elements/1.1/source dc:source rdf:type owl:AnnotationProperty . ### http://purl.org/dc/terms/contributor terms:contributor rdf:type owl:AnnotationProperty ; rdfs:isDefinedBy terms:contributor ; rdfs:label "contributor"@en-us ; skos:definition "entity responsible for making contributions to the resource"@en-us . ### http://purl.org/dc/terms/creator terms:creator rdf:type owl:AnnotationProperty ; rdfs:isDefinedBy terms:creator ; rdfs:label "creator"@en-us ; skos:definition "entity responsible for making the resource"@en-us ; rdfs:subPropertyOf terms:contributor . ### http://purl.org/dc/terms/date terms:date rdf:type owl:AnnotationProperty . ### http://purl.org/dc/terms/description terms:description rdf:type owl:AnnotationProperty . ### http://purl.org/dc/terms/license terms:license rdf:type owl:AnnotationProperty . ### http://purl.org/dc/terms/source terms:source rdf:type owl:AnnotationProperty ; rdfs:isDefinedBy terms:source ; rdfs:label "source"@en-us ; skos:definition "related resource from which the described resource is derived"@en-us ; AnnotationVocabulary:explanatoryNote """The intent is to provide a user with a reference as to how the thing being annotated was derived or arrived at. - The source can be a URL to a standard, common dictionary (e.g. Oxford), or similar reference. Or it can be a short description of where the entity being annotated was derived from. - The 'Source' annotation would most likely be used as an annotation on an annotation. For instance annotating a Natural Language definition annotation."""@en-us . ### http://purl.org/dc/terms/title terms:title rdf:type owl:AnnotationProperty . ### http://purl.unep.org/sdg/SDGIO_00000064 rdf:type owl:AnnotationProperty . ### http://purl.unep.org/sdg/SDGIO_00000066 rdf:type owl:AnnotationProperty . ### http://purl.unep.org/sdg/SDGIO_00010058 rdf:type owl:AnnotationProperty . ### http://www.geneontology.org/formats/oboInOwl#created_by oboInOwl:created_by rdf:type owl:AnnotationProperty . ### http://www.geneontology.org/formats/oboInOwl#creation_date oboInOwl:creation_date rdf:type owl:AnnotationProperty . ### http://www.geneontology.org/formats/oboInOwl#editor_note oboInOwl:editor_note rdf:type owl:AnnotationProperty . ### http://www.geneontology.org/formats/oboInOwl#hasAlternativeId oboInOwl:hasAlternativeId rdf:type owl:AnnotationProperty ; rdfs:label "has_alternative_id" . ### http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym oboInOwl:hasBroadSynonym rdf:type owl:AnnotationProperty ; obo:IAO_0000115 "An alternative label for a class or property which has a more general meaning than the preferred name/primary label." ; obo:IAO_0000117 ; obo:IAO_0000233 "https://github.com/information-artifact-ontology/ontology-metadata/issues/18" ; rdfs:label "has broad synonym"@en , "has_broad_synonym" ; rdfs:seeAlso "https://github.com/information-artifact-ontology/ontology-metadata/issues/18" ; rdfs:subPropertyOf obo:IAO_0000118 . ### http://www.geneontology.org/formats/oboInOwl#hasDbXref oboInOwl:hasDbXref rdf:type owl:AnnotationProperty ; rdfs:isDefinedBy ; rdfs:label "database_cross_reference"@en , "has database cross reference"@en , "数据库_交叉_引用"@zh , "database_cross_reference" , "数据库_交叉_引用" . ### http://www.geneontology.org/formats/oboInOwl#hasDefinition oboInOwl:hasDefinition rdf:type owl:AnnotationProperty . ### http://www.geneontology.org/formats/oboInOwl#hasExactSynonym oboInOwl:hasExactSynonym rdf:type owl:AnnotationProperty ; obo:IAO_0000115 "A property representing a fully qualified synonym, contains the string, term type, source, and an optional source code if appropriate. Each subfield is deliniated to facilitate interpretation by software." , "An alternative label for a class or property which has the exact same meaning than the preferred name/primary label." , "An alternative label for a given entity such as a commonly used abbreviation or synonym. " ; obo:IAO_0000117 ; obo:IAO_0000233 "https://github.com/information-artifact-ontology/ontology-metadata/issues/20" ; oboInOwl:hasExactSynonym "FULL_SYN" , "Synonym with Source Data" ; rdfs:label "has exact synonym"@en , "alternative_term" , "has exact synonym" , "has_exact_synonym" ; rdfs:seeAlso "https://github.com/information-artifact-ontology/ontology-metadata/issues/20" ; rdfs:subPropertyOf obo:IAO_0000118 . ### http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym oboInOwl:hasNarrowSynonym rdf:type owl:AnnotationProperty ; obo:IAO_0000115 "An alternative label for a class or property which has a more specific meaning than the preferred name/primary label." ; obo:IAO_0000117 ; obo:IAO_0000233 "https://github.com/information-artifact-ontology/ontology-metadata/issues/19" ; rdfs:label "has narrow synonym"@en , "has_narrow_synonym" ; rdfs:seeAlso "https://github.com/information-artifact-ontology/ontology-metadata/issues/19" ; rdfs:subPropertyOf obo:IAO_0000118 . ### http://www.geneontology.org/formats/oboInOwl#hasOBONamespace oboInOwl:hasOBONamespace rdf:type owl:AnnotationProperty ; rdfs:comment "disease_ontology" ; rdfs:label "has_obo_namespace"@en , "有_obo_命名空间"@zh , "has_obo_namespace" , "有_obo_命名空间" . ### http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym oboInOwl:hasRelatedSynonym rdf:type owl:AnnotationProperty ; obo:IAO_0000115 "An alternative label for a class or property that has been used synonymously with the primary term name, but the usage is not strictly correct." ; obo:IAO_0000117 ; obo:IAO_0000233 "https://github.com/information-artifact-ontology/ontology-metadata/issues/21" ; rdfs:label "has related synonym"@en , "has_related_synonym" ; rdfs:seeAlso "https://github.com/information-artifact-ontology/ontology-metadata/issues/21" ; rdfs:subPropertyOf obo:IAO_0000118 . ### http://www.geneontology.org/formats/oboInOwl#hasSynonym oboInOwl:hasSynonym rdf:type owl:AnnotationProperty ; rdfs:label "has synonym"@en . ### http://www.geneontology.org/formats/oboInOwl#hasVersion oboInOwl:hasVersion rdf:type owl:AnnotationProperty . ### http://www.geneontology.org/formats/oboInOwl#id oboInOwl:id rdf:type owl:AnnotationProperty ; rdfs:label "id" . ### http://www.geneontology.org/formats/oboInOwl#inSubset oboInOwl:inSubset rdf:type owl:AnnotationProperty ; rdfs:label "in_subset" . ### http://www.geneontology.org/formats/oboInOwl#is_class_level oboInOwl:is_class_level rdf:type owl:AnnotationProperty . ### http://www.geneontology.org/formats/oboInOwl#is_metadata_tag oboInOwl:is_metadata_tag rdf:type owl:AnnotationProperty . ### http://www.geneontology.org/formats/oboInOwl#shorthand oboInOwl:shorthand rdf:type owl:AnnotationProperty ; rdfs:label "shorthand"@en , "shorthand" . ### http://www.lesfleursdunormal.fr/static/_downloads/owlready_ontology.owl#python_name rdf:type owl:AnnotationProperty . ### http://www.ontologyrepository.com/CommonCoreOntologies/alternative_label CommonCoreOntologies:alternative_label rdf:type owl:AnnotationProperty . ### http://www.ontologyrepository.com/CommonCoreOntologies/definition CommonCoreOntologies:definition rdf:type owl:AnnotationProperty . ### http://www.ontologyrepository.com/CommonCoreOntologies/definition_source CommonCoreOntologies:definition_source rdf:type owl:AnnotationProperty . ### http://www.ontologyrepository.com/CommonCoreOntologies/elucidation CommonCoreOntologies:elucidation rdf:type owl:AnnotationProperty . ### http://www.ontologyrepository.com/CommonCoreOntologies/example_of_usage CommonCoreOntologies:example_of_usage rdf:type owl:AnnotationProperty . ### http://www.ontologyrepository.com/CommonCoreOntologies/is_curated_in_ontology CommonCoreOntologies:is_curated_in_ontology rdf:type owl:AnnotationProperty . ### http://www.w3.org/1999/02/22-rdf-syntax-ns#type rdf:type rdf:type owl:AnnotationProperty . ### http://www.w3.org/2000/01/rdf-schema#comment rdfs:comment rdf:type owl:AnnotationProperty ; rdfs:label "comment"@en . ### http://www.w3.org/2000/01/rdf-schema#isDefinedBy rdfs:isDefinedBy rdf:type owl:AnnotationProperty . ### http://www.w3.org/2000/01/rdf-schema#label rdfs:label rdf:type owl:AnnotationProperty ; obo:IAO_0000111 "label" ; rdfs:comment "A human-readable name for the subject."@en ; rdfs:isDefinedBy ; rdfs:label "label"@en , "label" , "标签" . ### http://www.w3.org/2000/01/rdf-schema#seeAlso rdfs:seeAlso rdf:type owl:AnnotationProperty ; oboInOwl:hasDbXref "http://www.w3.org/2000/01/rdf-schema#seeAlso" ; oboInOwl:hasOBONamespace "spatial" , "uberon" ; oboInOwl:id "seeAlso" ; oboInOwl:is_metadata_tag "true"^^xsd:boolean ; oboInOwl:shorthand "seeAlso" ; rdfs:label "see also" . ### http://www.w3.org/2002/07/owl#equivalentProperty owl:equivalentProperty rdf:type owl:AnnotationProperty ; rdfs:label "equivalent property"@en . ### http://www.w3.org/2002/07/owl#minQualifiedCardinality owl:minQualifiedCardinality rdf:type owl:AnnotationProperty . ### http://www.w3.org/2004/02/skos/core#altLabel skos:altLabel rdf:type owl:AnnotationProperty . ### http://www.w3.org/2004/02/skos/core#closeMatch skos:closeMatch rdf:type owl:AnnotationProperty . ### http://www.w3.org/2004/02/skos/core#definition skos:definition rdf:type owl:AnnotationProperty . ### http://www.w3.org/2004/02/skos/core#editorialNote skos:editorialNote rdf:type owl:AnnotationProperty . ### http://www.w3.org/2004/02/skos/core#example skos:example rdf:type owl:AnnotationProperty . ### http://www.w3.org/2004/02/skos/core#inScheme skos:inScheme rdf:type owl:AnnotationProperty . ### http://www.w3.org/2004/02/skos/core#note skos:note rdf:type owl:AnnotationProperty . ### http://www.w3.org/2004/02/skos/core#prefLabel skos:prefLabel rdf:type owl:AnnotationProperty . ### http://www.w3.org/2004/02/skos/core#scopeNote skos:scopeNote rdf:type owl:AnnotationProperty . ### https://schema.org/alternateName rdf:type owl:AnnotationProperty ; rdfs:label "alternate name"@en . ### https://spec.industrialontologies.org/ontology/core/meta/AnnotationVocabulary/adaptedFrom AnnotationVocabulary:adaptedFrom rdf:type owl:AnnotationProperty ; rdfs:isDefinedBy AnnotationVocabulary: ; rdfs:label "adapted from"@en-us ; skos:definition "source for the resource that was modified to create the subject resource"@en-us ; rdfs:subPropertyOf terms:source . ### https://spec.industrialontologies.org/ontology/core/meta/AnnotationVocabulary/directSource AnnotationVocabulary:directSource rdf:type owl:AnnotationProperty ; rdfs:isDefinedBy AnnotationVocabulary: ; rdfs:label "direct source"@en-us ; skos:definition "definitive source of the subject resource"@en-us ; rdfs:subPropertyOf terms:source . ### https://spec.industrialontologies.org/ontology/core/meta/AnnotationVocabulary/excerptedFrom AnnotationVocabulary:excerptedFrom rdf:type owl:AnnotationProperty ; rdfs:isDefinedBy AnnotationVocabulary: ; rdfs:label "excerpted from"@en-us ; skos:definition "source of a resource that was imported unmodified from an external ontology" ; AnnotationVocabulary:usageNote "This annotation is to be used when an element from a non-IOF ontology is used in an IOF ontology (and the source ontology is not imported in its entirety)."@en-us ; rdfs:subPropertyOf terms:source . ### https://spec.industrialontologies.org/ontology/core/meta/AnnotationVocabulary/explanatoryNote AnnotationVocabulary:explanatoryNote rdf:type owl:AnnotationProperty ; rdfs:label "explanatory note"@en-us ; skos:definition "note that provides additional explanatory information about a given notion or resource"@en-us ; rdfs:subPropertyOf skos:note . ### https://spec.industrialontologies.org/ontology/core/meta/AnnotationVocabulary/firstOrderLogicAxiom AnnotationVocabulary:firstOrderLogicAxiom rdf:type owl:AnnotationProperty ; rdfs:label "first-order logic axiom"@en-us ; skos:definition "logic axiom annotation written in first order logic"@en-us ; AnnotationVocabulary:usageNote "First-order logic axioms MAY be provided if the term is primitive ('is primitive' is true ) or non-primitive. A construct MAY include more than one first-order logic axiom annotation."@en-us ; rdfs:subPropertyOf AnnotationVocabulary:logicAxiom . ### https://spec.industrialontologies.org/ontology/core/meta/AnnotationVocabulary/firstOrderLogicDefinition AnnotationVocabulary:firstOrderLogicDefinition rdf:type owl:AnnotationProperty ; rdfs:label "first order logic definition"@en-us ; skos:definition "logic definition that expresses the axioms of a class or an object property in first order logic" ; skos:example """An example of a First Order Logic definition for 'Product' might be (again bearing in mind the natural language terms appearing should be regarded as symbols in the IOF signature): - Continuant(x) ∧ ¬(SpecificallyDependentContinuant(x) ∨ Person(x) ∨ Organization(x)) ∧ ∃r (ProductRole(r) ∧ hasRole(x, r))"""@en-us ; AnnotationVocabulary:usageNote """The First Order Logic Definition annotation is comprised of the (complete) necessary and sufficient conditions. - This annotation is Required for each non-primitive (aka non-axiomatic) class (i.e. unary relation) of a published IOF OWL ontology. This is the most authoritative and comprehensive definition of an IOF element. - IOF Common Logic ontologies do not require this annotation, but if included it must be logically equivalent to the Common Logic definition. - A primitive (aka axiomatic) term will not have a First Order Logic definition in either an OWL or Common Logic IOF ontology. - There should be at most one First Order Logic definition. - The specific symbols to be used for existential and universal quantification along with those for conjunction, disjunction, negation, conditional (i.e. if-then), and equivalence will be those commonly used in the mathematical formulas and statement. - Conjunction - ∧; Disjunction - ∨; Negation - ¬; Existential Quantification - ∃; Universal Quantification - ∀; Conditional - →; Equivalence - ↔; Left/Right Parentheses - (,); Left/Right Brackets - {,}."""@en-us ; rdfs:subPropertyOf AnnotationVocabulary:logicDefinition . ### https://spec.industrialontologies.org/ontology/core/meta/AnnotationVocabulary/isPrimitive AnnotationVocabulary:isPrimitive rdf:type owl:AnnotationProperty ; rdfs:label "is primitive"@en-us ; skos:definition "boolean flag indicating that necessary and sufficient conditions are not provided"@en-us ; AnnotationVocabulary:usageNote "'is primitive' must be present if the term does not have necessary and sufficient conditions and the value of the annotation must be set to true. When 'is primitive' is set to true, a value for a 'primitive rationale' annotation must also be provided."@en-us . ### https://spec.industrialontologies.org/ontology/core/meta/AnnotationVocabulary/logicAxiom AnnotationVocabulary:logicAxiom rdf:type owl:AnnotationProperty ; rdfs:label "logic axiom"@en-us ; skos:definition "logical statements constraining the interpretation of the notion represented by the construct that do not provide necessary and sufficient conditions"@en-us ; AnnotationVocabulary:explanatoryNote "This annotation property is an abstraction of the more specialized logic axiom annotations used in IOF. However, this annotation property can also be used to group together the logic axiom annotation values of different forms (such as FOL and natural language) that express the same meaning for a particular construct."@en-us ; AnnotationVocabulary:usageNote "A first order logic axiom expression and a semi-formal natural language axiom expression should be added as Property values for each logic axiom annotation using 1 of each of the corresponding logic axiom annotation subproperties."@en-us ; rdfs:subPropertyOf skos:note . ### https://spec.industrialontologies.org/ontology/core/meta/AnnotationVocabulary/logicDefinition AnnotationVocabulary:logicDefinition rdf:type owl:AnnotationProperty ; rdfs:label "logic definition"@en-us ; skos:definition "definition in the form of a logical expression"@en-us ; rdfs:subPropertyOf skos:definition . ### https://spec.industrialontologies.org/ontology/core/meta/AnnotationVocabulary/maturity AnnotationVocabulary:maturity rdf:type owl:AnnotationProperty ; rdfs:label "maturity"@en-us ; skos:definition "annotation property used to indicate the development status of a resource"@en-us ; AnnotationVocabulary:usageNote "Any value for maturity MUST be an instance of MaturityLevel. All IOF ontologies MUST include exactly one maturity annotation. IOF constructs may include a maturity annotation."@en-us . ### https://spec.industrialontologies.org/ontology/core/meta/AnnotationVocabulary/naturalLanguageDefinition AnnotationVocabulary:naturalLanguageDefinition rdf:type owl:AnnotationProperty ; rdfs:label "natural language definition"@en-us ; skos:definition "definition written in plain text for human understanding"@en-us ; AnnotationVocabulary:usageNote """This annotation is Required for each non-primitive or non-axiomatic class of an IOF (OWL or Common Logic) ontology. - It is optional for primitive (aka axiomatic) classes since such the Elucidation annotation is required and will satisfy the role of a natural language definition. - It is optional, but recommended, for relations when the intent of a relation may be misunderstood. - There should be at most one. - This natural language definition should be subject matter expert friendly and consistent with any formal definition or elucidation. - Natural language definitions should use class and relation names with following caveats: a) Relations – For those relations whose label (i.e. local identifier) consist of multiple terms hyphenate the terms of the label: e.g. 'hasPlan' would be written as 'has-plan' b) Classes – For classes whose label has multiple distinct terms, e.g, ManufacturingOperationSpecification, separate the terms but bound them with apostrophe marks: 'Manufacturing Operation Specification'."""@en-us ; rdfs:subPropertyOf skos:definition . ### https://spec.industrialontologies.org/ontology/core/meta/AnnotationVocabulary/primitiveRationale AnnotationVocabulary:primitiveRationale rdf:type owl:AnnotationProperty ; rdfs:label "primitive rationale"@en-us ; skos:definition "reason why necessary and sufficient conditions could not be provided"@en-us ; AnnotationVocabulary:usageNote "When 'is primitive' is set to true, a value for 'primitive rationale' must be provided. The rationale should indicate what is missing if additional work is required to define necessary and sufficient conditions."@en-us ; rdfs:subPropertyOf skos:note . ### https://spec.industrialontologies.org/ontology/core/meta/AnnotationVocabulary/semiFormalNaturalLanguageAxiom AnnotationVocabulary:semiFormalNaturalLanguageAxiom rdf:type owl:AnnotationProperty ; rdfs:label "semi-formal natural language axiom"@en-us ; skos:definition "logic axiom expressed in natural language"@en-us ; AnnotationVocabulary:usageNote "Semi-formal natural language axioms MAY be provided if the term is primitive (is primitive is true). A construct MAY include more than one semi-formal natural language axiom annotation."@en-us ; rdfs:subPropertyOf AnnotationVocabulary:logicAxiom . ### https://spec.industrialontologies.org/ontology/core/meta/AnnotationVocabulary/semiFormalNaturalLanguageDefinition AnnotationVocabulary:semiFormalNaturalLanguageDefinition rdf:type owl:AnnotationProperty ; rdfs:label "semi-formal natural language definition"@en-us ; skos:definition "logic definition that expresses a first order logic definition or common logic definition in natural language" ; AnnotationVocabulary:usageNote """This annotation is required if an element in an IOF OWL ontology has a First Order Logic definition or in a IOF Common Logic (where the element is defined using Common Logic). - The intent of this annotation to provide a transition or bridge from the First Order Logic definition of a notion to the natural language definition. This definition is intended to help a user understand the intended interpretation of the notion. - As example using the First Order Logic definition of 'Product' above, a semi-formal translation of that might be: - Product =def. Continuant that is not a Person and not an Organization and not a Specifically Dependent Continuant and there is a Product Role that the thing has or bears."""@en-us ; rdfs:subPropertyOf AnnotationVocabulary:logicDefinition . ### https://spec.industrialontologies.org/ontology/core/meta/AnnotationVocabulary/subjectMatterExpertExplanation AnnotationVocabulary:subjectMatterExpertExplanation rdf:type owl:AnnotationProperty ; rdfs:label "subject matter expert explanation" ; skos:definition "definition of the term expressed in natural language that has the minimal usage of ontological terms and is intended to be a self-standing explanation" ; AnnotationVocabulary:usageNote """Usage of this annotation is optional but is recommended in cases where: - the natural language definition or elucidation rely heavily on the terms defined in the ontology - there exists an explanation of the term that is more familiar to SMEs that does not coincide with the definition present in the ontology""" ; rdfs:subPropertyOf skos:definition . ### https://spec.industrialontologies.org/ontology/core/meta/AnnotationVocabulary/usageNote AnnotationVocabulary:usageNote rdf:type owl:AnnotationProperty ; rdfs:label "usage note"@en-us ; skos:definition "note that provides information about how a given notion or resource is used in the ontology's context"@en-us ; rdfs:subPropertyOf skos:note . ### https://www.w3id.org/sco#SCO_0000039 rdf:type owl:AnnotationProperty ; rdfs:comment """We envisage using this annotation property to highlight (indirectly) the grounding of certain entities on perspectives and characterize them according to the embraced perspective(s). Here, it is provided an explicative example. Let’s consider that two users, A and B, endorse two different perspectives on sustainability, perspective A and perspective B. These perspectives lead to considering different complex system components as stakeholders of the complex system of interest. (This is an explicative example. It could also be the case that there is just one single user who wants to characterize the same entity according to two perspectives on sustainability, or who wants to provide an additional characterization according to a different perspective than the one previously covered.) We suggest proceeding as follows. First, the class “perspective” can be instantiated with two “perspective” individuals, “perspective A” and “perspective B”. These “perspective” individuals will provide descriptions and other relevant information regarding users’ perspectives. Then, two subclasses, “stakeholder – A” and “stakeholder – B”, can be added to the class “stakeholder”. These classes could be created manually and further populated with further subclasses and/or individuals. Alternatively, they can be created by adding SPARQL query results to the ontology, directly as classes or as classes equivalent to some new classes manually created. Subclasses “stakeholder – A” and “stakeholder – B” will cover stakeholders according to the two different user perspectives. Finally, this annotation property can be used to annotate these two subclasses with the corresponding individual “perspective A” and “perspective B”. In proceeding as such, we can highlight the grounding of the role of stakeholder (entity) on perspective (entity) and provide stakeholder characterizations according to the two user perspectives. This procedure supports establishing indirectly the grounding of certain entities on perspectives. This procedure, however, ensures the possibility to also account for different characterizations of the same entity according to different perspectives, thereby assisting in clarifying and comparing those perspectives. Further, as a user may change perspective over time, this procedure can be performed whenever the perspective changes. New classes, covering time references, can be created and annotated with new perspectives. This will also assist in tracking users’ perspectives evolution over time. We contemplate the possible creation of an object property to directly model grounding on perspectives as part of future implementations of SCO.""" ; rdfs:label "according to the perspective"@en , "secondo la prospettiva"@it , "selon la perspective"@fr ; rdfs:range . ### https://www.wikidata.org/wiki/Q1823134 rdf:type owl:AnnotationProperty ; "library_of_congress_subject_headings"@en ; rdfs:label "Library of Congress Subject Headings"@en ; owl:equivalentProperty "http://purl.org/dc/terms/LCSH"^^xsd:anyURI ; "https://viaf.org/viaf/174475040"^^xsd:anyURI . ### https://www.wikidata.org/wiki/Property:P1149 rdf:type owl:AnnotationProperty ; "library_of_congress_classification"@en ; rdfs:label "Library of Congress Classification"@en . ### https://www.wikidata.org/wiki/Property:P1382 rdf:type owl:AnnotationProperty ; "partially_coincident_with"@en ; rdfs:label "partially coincident with"@en . ### https://www.wikidata.org/wiki/Property:P1813 rdf:type owl:AnnotationProperty ; "short_name"@en ; rdfs:label "short name"@en ; rdfs:subPropertyOf . ### https://www.wikidata.org/wiki/Property:P214 rdf:type owl:AnnotationProperty ; "viaf_id"@en ; rdfs:label "VIAF ID"@en . ### https://www.wikidata.org/wiki/Property:P2561 rdf:type owl:AnnotationProperty ; "name"@en ; rdfs:label "name"@en . ### https://www.wikidata.org/wiki/Property:P361 rdf:type owl:AnnotationProperty ; "part_of"@en ; rdfs:label "part of"@en ; rdfs:subPropertyOf . ### https://www.wikidata.org/wiki/Property:P5191 rdf:type owl:AnnotationProperty ; "derived_from"@en ; rdfs:label "derived from"@en . ### https://www.wikidata.org/wiki/Property:P5806 rdf:type owl:AnnotationProperty ; "snomed_ct_identifier"@en ; rdfs:label "SNOMED CT Identifier"@en . ### https://www.wikidata.org/wiki/Property:P703 rdf:type owl:AnnotationProperty ; "found_in_taxon"@en ; rdfs:label "found in taxon"@en ; rdfs:subPropertyOf . ################################################################# # Object Properties ################################################################# ### http://purl.obolibrary.org/obo/BFO_0000050 obo:BFO_0000050 rdf:type owl:ObjectProperty , owl:TransitiveProperty ; obo:IAO_0000111 "is part of"@en ; obo:IAO_0000112 "my brain is part of my body (continuant parthood, two material entities)"@en , "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)"@en , "this day is part of this year (occurrent parthood)"@en ; obo:IAO_0000115 "a core relation that holds between a part and its whole"@en ; obo:IAO_0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other."@en , "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"@en , """Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.) A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'."""@en ; obo:IAO_0000118 "part_of"@en ; rdfs:label "part of"@en , "part of" , "part_of" . ### http://purl.obolibrary.org/obo/BFO_0000051 obo:BFO_0000051 rdf:type owl:ObjectProperty , owl:TransitiveProperty ; obo:IAO_0000111 "has part"@en ; obo:IAO_0000112 "my body has part my brain (continuant parthood, two material entities)"@en , "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)"@en , "this year has part this day (occurrent parthood)"@en ; obo:IAO_0000115 "a core relation that holds between a whole and its part"@en ; obo:IAO_0000116 "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part."@en , "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"@en , """Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.) A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'."""@en ; obo:IAO_0000118 "has_part"@en ; rdfs:label "has part"@en . ### http://purl.obolibrary.org/obo/BFO_0000054 obo:BFO_0000054 rdf:type owl:ObjectProperty ; owl:inverseOf obo:BFO_0000055 ; rdfs:domain obo:BFO_0000017 ; rdfs:range obo:BFO_0000015 ; obo:IAO_0000111 "realized in"@en ; obo:IAO_0000112 "this disease is realized in this disease course"@en , "this fragility is realized in this shattering"@en , "this investigator role is realized in this investigation"@en ; obo:IAO_0000118 "is realized by"@en , "realized_in"@en ; obo:IAO_0000600 "[copied from inverse property 'realizes'] to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])"@en ; dc:identifier "206-BFO" ; rdfs:comment "Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process" ; rdfs:isDefinedBy obo:bfo.owl ; rdfs:label "has realization"@en , "realized in"@en ; skos:altLabel "realized in"@en ; skos:definition "b has realization c =Def c realizes b"@en ; skos:example "As for realizes"@en ; skos:prefLabel "has realization"@en . ### http://purl.obolibrary.org/obo/BFO_0000055 obo:BFO_0000055 rdf:type owl:ObjectProperty ; rdfs:domain obo:BFO_0000015 ; rdfs:range obo:BFO_0000017 ; obo:IAO_0000111 "realizes"@en ; obo:IAO_0000112 "this disease course realizes this disease"@en , "this investigation realizes this investigator role"@en , "this shattering realizes this fragility"@en ; obo:IAO_0000600 "to say that b realizes c at t is to assert that there is some material entity d & b is a process which has participant d at t & c is a disposition or role of which d is bearer_of at t& the type instantiated by b is correlated with the type instantiated by c. (axiom label in BFO2 Reference: [059-003])"@en ; dc:identifier "059-BFO" ; rdfs:comment "Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process" ; rdfs:isDefinedBy obo:iao.owl ; rdfs:label "realizes"@en ; skos:definition "(Elucidation) realizes is a relation between a process b and realizable entity c such that c inheres in some d & for all t, if b has participant d then c exists & the type instantiated by b is correlated with the type instantiated by c"@en ; skos:example "A balding process realizes a disposition to go bald; a studying process realizes a student role; a process of pumping blood realizes the pumping function of a heart"@en ; skos:prefLabel "realizes"@en . ### http://purl.obolibrary.org/obo/BFO_0000056 obo:BFO_0000056 rdf:type owl:ObjectProperty ; owl:inverseOf obo:BFO_0000057 ; rdfs:domain [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000020 obo:BFO_0000031 [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ) ] ; rdfs:range obo:BFO_0000015 ; dc:identifier "250-BFO" ; rdfs:label "participates in"@en ; skos:definition "(Elucidation) participates in holds between some b that is either a specifically dependent continuant or generically dependent continuant or independent continuant that is not a spatial region & some process p such that b participates in p some way"@en ; skos:prefLabel "participates in at some time"@en . ### http://purl.obolibrary.org/obo/BFO_0000057 obo:BFO_0000057 rdf:type owl:ObjectProperty ; rdfs:domain obo:BFO_0000015 ; rdfs:range [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000020 obo:BFO_0000031 [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ) ] ; dc:identifier "248-BFO" ; rdfs:label "has participant"@en ; skos:definition "p has participant c =Def c participates in p"@en ; skos:prefLabel "has participant at some time"@en . ### http://purl.obolibrary.org/obo/BFO_0000058 obo:BFO_0000058 rdf:type owl:ObjectProperty ; owl:inverseOf obo:BFO_0000059 ; rdfs:domain obo:BFO_0000031 ; rdfs:range [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000015 obo:BFO_0000020 ) ] ; dc:identifier "258-BFO" ; rdfs:label "is concretized by"@en ; skos:definition "c is concretized by b =Def b concretizes c"@en ; skos:prefLabel "is concretized by at some time"@en . ### http://purl.obolibrary.org/obo/BFO_0000059 obo:BFO_0000059 rdf:type owl:ObjectProperty ; rdfs:domain [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000015 obo:BFO_0000020 ) ] ; rdfs:range obo:BFO_0000031 ; dc:identifier "256-BFO" ; rdfs:label "concretizes"@en ; skos:definition "b concretizes c =Def b is a process or a specifically dependent continuant & c is a generically dependent continuant & there is some time t such that c is the pattern or content which b shares at t with actual or potential copies"@en ; skos:prefLabel "concretizes at some time"@en . ### http://purl.obolibrary.org/obo/BFO_0000062 obo:BFO_0000062 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002086 ; owl:inverseOf obo:BFO_0000063 ; rdf:type owl:TransitiveProperty ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000003 ; obo:IAO_0000111 "preceded by"@en ; obo:IAO_0000115 "x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point."@en ; obo:IAO_0000116 "An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other."@en ; obo:IAO_0000118 "is preceded by"@en , "preceded_by"@en ; dc:identifier "213-BFO" ; terms:source "http://www.obofoundry.org/ro/#OBO_REL:preceded_by" ; oboInOwl:inSubset ; rdfs:label "preceded by"@en ; skos:definition "b preceded by c =Def b precedes c"@en ; skos:example "The temporal region occupied by the second half of the match is preceded by the temporal region occupied by the first half of the match"@en ; skos:prefLabel "preceded by"@en . ### http://purl.obolibrary.org/obo/BFO_0000063 obo:BFO_0000063 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002222 ; rdf:type owl:TransitiveProperty ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000003 ; obo:IAO_0000111 "precedes"@en ; obo:IAO_0000115 "x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point."@en ; dc:identifier "270-BFO" ; oboInOwl:inSubset ; rdfs:label "precedes"@en ; skos:definition "(Elucidation) precedes is a relation between occurrents o, o' such that if t is the temporal extent of o & t' is the temporal extent of o' then either the last instant of o is before the first instant of o' or the last instant of o is the first instant of o' & neither o nor o' are temporal instants"@en ; skos:example "The temporal region occupied by Mary's birth precedes the temporal region occupied by Mary's death."@en ; skos:prefLabel "precedes"@en ; skos:scopeNote "Each temporal region is its own temporal extent. The temporal extent of a spatiotemporal region is the temporal region it temporally projects onto. The temporal extent of a process or process boundary that occupies temporal region t is t." , "Precedes defines a strict partial order on occurrents." . ### http://purl.obolibrary.org/obo/BFO_0000066 obo:BFO_0000066 rdf:type owl:ObjectProperty ; owl:inverseOf obo:BFO_0000067 , obo:BFO_0000183 ; rdfs:domain [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000015 obo:BFO_0000035 ) ] ; rdfs:range [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000029 obo:BFO_0000040 ) ] ; obo:IAO_0000111 "occurs in"@en ; obo:IAO_0000115 "b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t"@en ; obo:IAO_0000118 "occurs_in"@en , "unfolds in"@en , "unfolds_in"@en ; dc:identifier "143-BFO" ; rdfs:label "occurs in"@en ; skos:definition "b occurs in c =Def b is a process or a process boundary & c is a material entity or site & there exists a spatiotemporal region r & b occupies spatiotemporal region r & for all time t, if b exists at t then c exists at t & there exist spatial regions s and s' where b spatially projects onto s at t & c occupies spatial region s' at t & s is a continuant part of s' at t"@en ; skos:example "A process of digestion occurs in the interior of an organism; a process of loading artillery rounds into a tank cannon occurs in the interior of the tank"@en ; skos:prefLabel "occurs in"@en . ### http://purl.obolibrary.org/obo/BFO_0000067 obo:BFO_0000067 rdf:type owl:ObjectProperty ; obo:IAO_0000111 "site of"@en ; obo:IAO_0000115 "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t"@en ; rdfs:comment "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant" ; rdfs:isDefinedBy obo:bfo.owl ; rdfs:label "contains process"@en . ### http://purl.obolibrary.org/obo/BFO_0000082 obo:BFO_0000082 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000171 ; rdf:type owl:TransitiveProperty ; rdfs:domain [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ; rdfs:range [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ; dc:identifier "235-BFO" ; rdfs:label "located in at all times"@en ; skos:definition "b located in c at all times =Def for all times t, b exists at t implies (b and c are independent continuants and not spatial regions, and the spatial region which b occupies at t is a (proper or improper) continuant part of the spatial region which c occupies at t)"@en ; skos:prefLabel "located in at all times"@en . ### http://purl.obolibrary.org/obo/BFO_0000084 obo:BFO_0000084 rdf:type owl:ObjectProperty ; owl:inverseOf obo:BFO_0000101 ; rdfs:domain obo:BFO_0000031 ; rdfs:range [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ; dc:identifier "252-BFO" ; rdfs:label "generically depends on"@en ; skos:altLabel "g-depends on"@en ; skos:definition "b generically depends on c =Def b is a generically dependent continuant & c is an independent continuant that is not a spatial region & at some time t there inheres in c a specifically dependent continuant which concretizes b at t"@en ; skos:prefLabel "generically depends on at some time"@en . ### http://purl.obolibrary.org/obo/BFO_0000101 obo:BFO_0000101 rdf:type owl:ObjectProperty ; rdfs:domain [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ; rdfs:range obo:BFO_0000031 ; dc:identifier "254-BFO" ; rdfs:label "is carrier of"@en ; skos:definition "b is carrier of c =Def there is some time t such that c generically depends on b at t"@en ; skos:prefLabel "is carrier of at some time"@en . ### http://purl.obolibrary.org/obo/BFO_0000108 obo:BFO_0000108 rdf:type owl:ObjectProperty ; rdfs:domain obo:BFO_0000001 ; rdfs:range obo:BFO_0000008 ; dc:identifier "118-BFO" ; rdfs:label "exists at"@en ; skos:definition "(Elucidation) exists at is a relation between a particular and some temporal region at which the particular exists"@en ; skos:example "First World War exists at 1914-1916; Mexico exists at January 1, 2000"@en ; skos:prefLabel "exists at"@en . ### http://purl.obolibrary.org/obo/BFO_0000110 obo:BFO_0000110 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000178 ; rdfs:domain obo:BFO_0000002 ; rdfs:range obo:BFO_0000002 ; dc:identifier "223-BFO" ; rdfs:label "has continuant part at all times"@en ; skos:definition "b has continuant part c at all times =Def for all times t, b exists at t implies (b and c are continuants & b is a part of c at t)"@en ; skos:prefLabel "has continuant part at all times"@en . ### http://purl.obolibrary.org/obo/BFO_0000111 obo:BFO_0000111 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000110 , obo:BFO_0000174 ; rdfs:domain obo:BFO_0000002 ; rdfs:range obo:BFO_0000002 ; dc:identifier "227-BFO" ; rdfs:label "has proper continuant part at all times"@en ; skos:definition "b has proper continuant part c at all times =Def c proper continuant part of b at all times"@en ; skos:prefLabel "has proper continuant part at all times"@en . ### http://purl.obolibrary.org/obo/BFO_0000113 obo:BFO_0000113 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000218 ; rdfs:domain obo:BFO_0000016 ; rdfs:range obo:BFO_0000040 ; dc:identifier "243-BFO" ; rdfs:label "has material basis at all times"@en ; skos:definition "b has material basis c at all times =Def For all times t, b exists at t implies (b is a disposition & c is a material entity & there is some d bearer of b & c continuant part of d at t & d has disposition b because c continuant part of d at t)"@en ; skos:prefLabel "has material basis at all times"@en . ### http://purl.obolibrary.org/obo/BFO_0000115 obo:BFO_0000115 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000178 ; owl:inverseOf obo:BFO_0000129 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; dc:identifier "230-BFO" ; rdfs:label "has member part"@en ; skos:definition "b has member part c =Def c member part of b"@en ; skos:prefLabel "has member part at some time"@en . ### http://purl.obolibrary.org/obo/BFO_0000117 obo:BFO_0000117 rdf:type owl:ObjectProperty ; owl:inverseOf obo:BFO_0000132 ; rdf:type owl:TransitiveProperty ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000003 ; dc:identifier "202-BFO" ; rdfs:label "has occurrent part"@en ; skos:definition "b has occurrent part c =Def c occurrent part of b"@en ; skos:example "Mary's life has occurrent part Mary's 5th birthday"@en ; skos:prefLabel "has occurrent part"@en . ### http://purl.obolibrary.org/obo/BFO_0000118 obo:BFO_0000118 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000117 ; owl:inverseOf obo:BFO_0000138 ; rdf:type owl:TransitiveProperty ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000003 ; dc:identifier "154-BFO" ; rdfs:label "has proper occurrent part"@en ; skos:definition "b has proper occurrent part c =Def b has occurrent part c & b and c are not identical"@en ; skos:example "As for has occurrent part."@en ; skos:prefLabel "has proper occurrent part"@en . ### http://purl.obolibrary.org/obo/BFO_0000121 obo:BFO_0000121 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000117 ; owl:inverseOf obo:BFO_0000139 ; rdf:type owl:TransitiveProperty ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000003 ; dc:identifier "211-BFO" ; rdfs:label "has temporal part"@en ; skos:definition "b has temporal part c =Def c temporal part of b"@en ; skos:example "Your life has temporal part the first year of your life."@en ; skos:prefLabel "has temporal part"@en . ### http://purl.obolibrary.org/obo/BFO_0000124 obo:BFO_0000124 rdf:type owl:ObjectProperty ; owl:inverseOf obo:BFO_0000171 ; rdfs:domain [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ; rdfs:range [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ; dc:identifier "236-BFO" ; rdfs:label "location of"@en ; skos:definition "b location of c =Def c located in b"@en ; skos:prefLabel "location of at some time"@en . ### http://purl.obolibrary.org/obo/BFO_0000127 obo:BFO_0000127 rdf:type owl:ObjectProperty ; owl:inverseOf obo:BFO_0000218 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000016 ; dc:identifier "244-BFO" ; rdfs:label "material basis of"@en ; skos:definition "b material basis of c =Def c has material basis b"@en ; skos:prefLabel "material basis of at some time"@en . ### http://purl.obolibrary.org/obo/BFO_0000129 obo:BFO_0000129 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000176 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; dc:identifier "228-BFO" ; rdfs:label "member part of"@en ; skos:definition "b member part of c =Def b is an object & c is a material entity & there is some time t such that b continuant part of c at t & there is a mutually exhaustive and pairwise disjoint partition of c into objects x1, ..., xn (for some n ≠ 1) with b = xi (for some 1 <= i <= n)"@en ; skos:prefLabel "member part of at some time"@en . ### http://purl.obolibrary.org/obo/BFO_0000132 obo:BFO_0000132 rdf:type owl:ObjectProperty , owl:TransitiveProperty ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000003 ; dc:identifier "003-BFO" ; rdfs:label "occurrent part of"@en ; skos:definition "(Elucidation) occurrent part of is a relation between occurrents b and c when b is part of c"@en ; skos:example "Mary's 5th birthday is an occurrent part of Mary's life; the first set of the tennis match is an occurrent part of the tennis match"@en ; skos:prefLabel "occurrent part of"@en . ### http://purl.obolibrary.org/obo/BFO_0000136 obo:BFO_0000136 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000139 ; owl:inverseOf obo:BFO_0000181 ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000003 ; dc:identifier "116-BFO" ; rdfs:label "proper temporal part of"@en ; skos:definition "b proper temporal part of c =Def b temporal part of c & not (b = c)"@en ; skos:example "As for temporal part of."@en ; skos:prefLabel "proper temporal part of"@en . ### http://purl.obolibrary.org/obo/BFO_0000137 obo:BFO_0000137 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000175 , obo:BFO_0000177 ; rdf:type owl:TransitiveProperty ; rdfs:domain obo:BFO_0000002 ; rdfs:range obo:BFO_0000002 ; dc:identifier "225-BFO" ; rdfs:label "proper continuant part of at all times"@en ; skos:definition "b proper continuant part of c at all times =Def for all times t, b exists at t implies (b continuant part of c at t & not (c proper continuant part of b at t))"@en ; skos:prefLabel "proper continuant part of at all times"@en . ### http://purl.obolibrary.org/obo/BFO_0000138 obo:BFO_0000138 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000132 ; rdf:type owl:TransitiveProperty ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000003 ; dc:identifier "005-BFO" ; rdfs:label "proper occurrent part of"@en ; skos:definition "b proper occurrent part of c =Def b occurrent part of c & b and c are not identical"@en ; skos:example "As for occurrent part of."@en ; skos:prefLabel "proper occurrent part of"@en . ### http://purl.obolibrary.org/obo/BFO_0000139 obo:BFO_0000139 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000132 ; rdf:type owl:TransitiveProperty ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000003 ; dc:identifier "078-BFO" ; rdfs:label "temporal part of"@en ; skos:definition "b temporal part of c =Def b occurrent part of c & (b and c are temporal regions) or (b and c are spatiotemporal regions & b temporally projects onto an occurrent part of the temporal region that c temporally projects onto) or (b and c are processes or process boundaries & b occupies a temporal region that is an occurrent part of the temporal region that c occupies)"@en ; skos:example "Your heart beating from 4pm to 5pm today is a temporal part of the process of your heart beating; the 4th year of your life is a temporal part of your life, as is the process boundary which separates the 3rd and 4th years of your life; the first quarter of a game of football is a temporal part of the whole game"@en ; skos:prefLabel "temporal part of"@en . ### http://purl.obolibrary.org/obo/BFO_0000153 obo:BFO_0000153 rdf:type owl:ObjectProperty , owl:FunctionalProperty ; rdfs:domain obo:BFO_0000011 ; rdfs:range obo:BFO_0000008 ; dc:identifier "080-BFO" ; rdfs:label "temporally projects onto"@en ; skos:definition "(Elucidation) temporally projects onto is a relation between a spatiotemporal region s and some temporal region which is the temporal extent of s"@en ; skos:example "The world line of a particle temporally projects onto the temporal region extending from the beginning to the end of the existence of the particle"@en ; skos:prefLabel "temporally projects onto"@en . ### http://purl.obolibrary.org/obo/BFO_0000163 obo:BFO_0000163 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000127 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000016 ; dc:identifier "245-BFO" ; rdfs:label "material basis of at all times"@en ; skos:definition "b material basis of c at all times =Def for all times t, b exists at t implies (c has material basis b at t)"@en ; skos:prefLabel "material basis of at all times"@en . ### http://purl.obolibrary.org/obo/BFO_0000164 obo:BFO_0000164 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000059 ; rdfs:domain [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000015 obo:BFO_0000020 ) ] ; rdfs:range obo:BFO_0000031 ; dc:identifier "257-BFO" ; rdfs:label "concretizes at all times"@en ; skos:definition "an s-dependent continuant b concretizes a g-dependent continuant c at all times =Def for all times t, b exists at t implies (c is the pattern or content which b shares at t with actual or potential copies)"@en ; skos:prefLabel "concretizes at all times"@en . ### http://purl.obolibrary.org/obo/BFO_0000165 obo:BFO_0000165 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000058 ; rdfs:domain obo:BFO_0000031 ; rdfs:range [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000015 obo:BFO_0000020 ) ] ; dc:identifier "259-BFO" ; rdfs:label "is concretized by at all times"@en ; skos:definition "a g-dependent continuant c is concretized by an s-dependent continuant or process b at all times =Def for all times t, b exists at t implies (b concretizes c at t)"@en ; skos:prefLabel "is concretized by at all times"@en . ### http://purl.obolibrary.org/obo/BFO_0000166 obo:BFO_0000166 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000056 ; rdfs:domain [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000020 obo:BFO_0000031 [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ) ] ; rdfs:range obo:BFO_0000015 ; dc:identifier "251-BFO" ; rdfs:label "participates in at all times"@en ; skos:definition "b participates in p at all times =Def for all times t, b exists at t implies (p has participant b at t)"@en ; skos:prefLabel "participates in at all times"@en . ### http://purl.obolibrary.org/obo/BFO_0000167 obo:BFO_0000167 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000057 ; rdfs:domain obo:BFO_0000015 ; rdfs:range [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000020 obo:BFO_0000031 [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ) ] ; dc:identifier "249-BFO" ; rdfs:label "has participant at all times"@en ; skos:definition "p has participant c at all times =Def for all times t, p exists at t implies (p is a process, c is a continuant, and c participates in p some way at t)"@en ; skos:prefLabel "has participant at all times"@en . ### http://purl.obolibrary.org/obo/BFO_0000170 obo:BFO_0000170 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000124 ; rdfs:domain [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ; rdfs:range [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ; dc:identifier "237-BFO" ; rdfs:label "location of at all times"@en ; skos:definition "b location of c at all times =Def for all times t, b exists at t implies (c located in b at t)"@en ; skos:prefLabel "location of at all times"@en . ### http://purl.obolibrary.org/obo/BFO_0000171 obo:BFO_0000171 rdf:type owl:ObjectProperty ; rdfs:domain [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ; rdfs:range [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ; dc:identifier "234-BFO" ; rdfs:label "located in"@en ; skos:definition "b located in c =Def b is an independent continuant & c is an independent & neither is a spatial region & there is some time t such that the spatial region which b occupies at t is continuant part of the spatial region which c occupies at t"@en ; skos:prefLabel "located in at some time"@en . ### http://purl.obolibrary.org/obo/BFO_0000172 obo:BFO_0000172 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000110 , obo:BFO_0000115 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; dc:identifier "231-BFO" ; rdfs:label "has member part at all times"@en ; skos:definition "b has member part c at all times =Def for all times t, b exists at t implies (c member part b at t)"@en ; skos:prefLabel "has member part at all times"@en . ### http://purl.obolibrary.org/obo/BFO_0000173 obo:BFO_0000173 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000129 , obo:BFO_0000177 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; dc:identifier "229-BFO" ; rdfs:label "member part of at all times"@en ; skos:definition "b member part of c at all times =Def for all times t, b exists at t implies (b is an object & c is an object aggregate & there is at t a mutually exhaustive and pairwise disjoint partition of c into objects x1,..., xn (for some n ≠ 1) with b = xi (for some 1 <= i <= n))"@en ; skos:prefLabel "member part of at all times"@en . ### http://purl.obolibrary.org/obo/BFO_0000174 obo:BFO_0000174 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000178 ; owl:inverseOf obo:BFO_0000175 ; rdfs:domain obo:BFO_0000002 ; rdfs:range obo:BFO_0000002 ; dc:identifier "226-BFO" ; rdfs:label "has proper continuant part at some time"@en ; skos:definition "b has proper continuant part c at some time =Def c proper continuant part of b at some time"@en ; skos:prefLabel "has proper continuant part at some time"@en . ### http://purl.obolibrary.org/obo/BFO_0000175 obo:BFO_0000175 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000176 ; rdfs:domain obo:BFO_0000002 ; rdfs:range obo:BFO_0000002 ; dc:identifier "224-BFO" ; rdfs:label "proper continuant part of at some time"@en ; skos:definition "b proper continuant part of c at some time =Def for some time t (b continuant part of c at t & not (c continuant part of b at t)"@en ; skos:prefLabel "proper continuant part of at some time"@en . ### http://purl.obolibrary.org/obo/BFO_0000176 obo:BFO_0000176 rdf:type owl:ObjectProperty ; owl:inverseOf obo:BFO_0000178 ; rdfs:domain obo:BFO_0000002 ; rdfs:range obo:BFO_0000002 ; dc:identifier "221-BFO" ; rdfs:label "continuant part of"@en ; skos:definition "b continuant part of c =Def b and c are continuants & there is some time t such that b and c exist at t & b continuant part of c at t"@en ; skos:example "Milk teeth continuant part of human; surgically removed tumour continuant part of organism"@en ; skos:prefLabel "continuant part of at some time"@en . ### http://purl.obolibrary.org/obo/BFO_0000177 obo:BFO_0000177 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000176 ; rdf:type owl:TransitiveProperty ; rdfs:domain obo:BFO_0000002 ; rdfs:range obo:BFO_0000002 ; dc:identifier "222-BFO" ; rdfs:label "continuant part of at all times"@en ; skos:definition "b continuant part of c at all times =Def for all times t, (b exists at t, implies b continuant part of c at t & t is a temporal region & b and c are continuants)"@en ; skos:example "Centre of mass of a material entity continuant part of material entity at all times; continuant fiat external boundary of an object continuant part of object at all times."@en ; skos:prefLabel "continuant part of at all times"@en . ### http://purl.obolibrary.org/obo/BFO_0000178 obo:BFO_0000178 rdf:type owl:ObjectProperty ; rdfs:domain obo:BFO_0000002 ; rdfs:range obo:BFO_0000002 ; dc:identifier "271-BFO" ; rdfs:label "has continuant part"@en ; skos:definition "b has continuant part c =Def c continuant part of b"@en ; skos:prefLabel "has continuant part at some time"@en . ### http://purl.obolibrary.org/obo/BFO_0000181 obo:BFO_0000181 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000121 ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000003 ; dc:identifier "212-BFO" ; rdfs:label "has proper temporal part"@en ; skos:definition "b has proper temporal part c =Def c proper temporal part of b"@en ; skos:example "As for has temporal part."@en ; skos:prefLabel "has proper temporal part"@en . ### http://purl.obolibrary.org/obo/BFO_0000183 obo:BFO_0000183 rdf:type owl:ObjectProperty ; rdfs:domain [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000029 obo:BFO_0000040 ) ] ; rdfs:range [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000015 obo:BFO_0000035 ) ] ; dc:identifier "267-BFO" ; rdfs:label "environs"@en ; skos:definition "b environs c =Def c occurs in b"@en ; skos:example "Mouth environs process of mastication; city environs traffic"@en ; skos:prefLabel "environs"@en . ### http://purl.obolibrary.org/obo/BFO_0000184 obo:BFO_0000184 rdf:type owl:ObjectProperty ; owl:inverseOf obo:BFO_0000185 ; rdf:type owl:FunctionalProperty , owl:InverseFunctionalProperty ; rdfs:domain obo:BFO_0000182 ; rdfs:range obo:BFO_0000040 ; dc:identifier "144-BFO" ; rdfs:label "history of"@en ; skos:definition "(Elucidation) history of is a relation between history b and material entity c such that b is the unique history of c"@en ; skos:example "This life is the history of this organism."@en ; skos:prefLabel "history of"@en . ### http://purl.obolibrary.org/obo/BFO_0000185 obo:BFO_0000185 rdf:type owl:ObjectProperty ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000182 ; dc:identifier "145-BFO" ; rdfs:label "has history"@en ; skos:definition "b has history c =Def c history of b"@en ; skos:example "This organism has history this life"@en ; skos:prefLabel "has history"@en . ### http://purl.obolibrary.org/obo/BFO_0000194 obo:BFO_0000194 rdf:type owl:ObjectProperty ; owl:inverseOf obo:BFO_0000195 ; rdfs:domain [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000020 [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ) ] ; rdfs:range obo:BFO_0000020 ; dc:identifier "260-BFO" ; rdfs:label "specifically depended on by"@en ; skos:altLabel "s-depended on by"@en ; skos:definition "b specifically depended on by c =Def c specifically depends on b"@en ; skos:example "Coloured object specifically depended on by colour"@en ; skos:prefLabel "specifically depended on by"@en . ### http://purl.obolibrary.org/obo/BFO_0000195 obo:BFO_0000195 rdf:type owl:ObjectProperty ; rdfs:domain obo:BFO_0000020 ; rdfs:range [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000020 [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ) ] ; dc:identifier "012-BFO" ; rdfs:label "specifically depends on"@en ; skos:altLabel "s-depends on"@en ; skos:definition "(Elucidation) specifically depends on is a relation between a specifically dependent continuant b and specifically dependent continuant or independent continuant that is not a spatial region c such that b and c share no parts in common & b is of a nature such that at all times t it cannot exist unless c exists & b is not a boundary of c"@en ; skos:example "A shape specifically depends on the shaped object; hue, saturation and brightness of a colour sample specifically depends on each other"@en ; skos:prefLabel "specifically depends on"@en ; skos:scopeNote "The analogue of specifically depends on for occurrents is has participant."@en . ### http://purl.obolibrary.org/obo/BFO_0000196 obo:BFO_0000196 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000194 ; owl:inverseOf obo:BFO_0000197 ; rdfs:domain [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ; rdfs:range obo:BFO_0000020 ; dc:identifier "053-BFO" ; rdfs:label "bearer of"@en ; skos:definition "b bearer of c =Def c inheres in b"@en ; skos:example "A patch of ink is the bearer of a colour quality; an organism is the bearer of a temperature quality"@en ; skos:prefLabel "bearer of"@en . ### http://purl.obolibrary.org/obo/BFO_0000197 obo:BFO_0000197 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000195 ; rdfs:domain obo:BFO_0000020 ; rdfs:range [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ; dc:identifier "051-BFO" ; rdfs:label "inheres in"@en ; skos:definition "b inheres in c =Def b is a specifically dependent continuant & c is an independent continuant that is not a spatial region & b specifically depends on c"@en ; skos:example "A shape inheres in a shaped object; a mass inheres in a material entity"@en ; skos:prefLabel "inheres in"@en . ### http://purl.obolibrary.org/obo/BFO_0000199 obo:BFO_0000199 rdf:type owl:ObjectProperty , owl:FunctionalProperty ; rdfs:domain [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000015 obo:BFO_0000035 ) ] ; rdfs:range obo:BFO_0000008 ; dc:identifier "132-BFO" ; rdfs:label "occupies temporal region"@en ; skos:definition "p occupies temporal region t =Def p is a process or process boundary & the spatiotemporal region occupied by p temporally projects onto t"@en ; skos:example "The Second World War occupies the temporal region September 1, 1939 - September 2, 1945"@en ; skos:prefLabel "occupies temporal region"@en . ### http://purl.obolibrary.org/obo/BFO_0000200 obo:BFO_0000200 rdf:type owl:ObjectProperty , owl:FunctionalProperty ; rdfs:domain [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000015 obo:BFO_0000035 ) ] ; rdfs:range obo:BFO_0000011 ; dc:identifier "082-BFO" ; rdfs:label "occupies spatiotemporal region"@en ; skos:definition "(Elucidation) occupies spatiotemporal region is a relation between a process or process boundary p and the spatiotemporal region s which is its spatiotemporal extent"@en ; skos:example "A particle emitted by a nuclear reactor occupies the spatiotemporal region which is its trajectory"@en ; skos:prefLabel "occupies spatiotemporal region"@en . ### http://purl.obolibrary.org/obo/BFO_0000210 obo:BFO_0000210 rdf:type owl:ObjectProperty ; rdfs:domain [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ; rdfs:range obo:BFO_0000006 ; dc:identifier "232-BFO" ; rdfs:label "occupies spatial region"@en ; skos:definition "b occupies spatial region r =Def b is an independent continuant that is not a spatial region & r is a spatial region & there is some time t such that every continuant part of b occupies some continuant part of r at t and no continuant part of b occupies any spatial region that is not a continuant part of r at t"@en ; skos:prefLabel "occupies spatial region at some time"@en . ### http://purl.obolibrary.org/obo/BFO_0000211 obo:BFO_0000211 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000210 ; rdf:type owl:FunctionalProperty ; rdfs:domain [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ; rdfs:range obo:BFO_0000006 ; dc:identifier "233-BFO" ; rdfs:label "occupies spatial region at all times"@en ; skos:definition "an independent continuant c that is not a spatial region occupies spatial region r at all times =Def for all times t, b exists at t implies (every continuant part of c occupies some continuant part of r at t and no continuant part of c occupies any spatial region that is not a continuant part of r at t)"@en ; skos:prefLabel "occupies spatial region at all times"@en . ### http://purl.obolibrary.org/obo/BFO_0000216 obo:BFO_0000216 rdf:type owl:ObjectProperty ; rdfs:domain obo:BFO_0000011 ; rdfs:range obo:BFO_0000006 ; dc:identifier "246-BFO" ; rdfs:label "spatially projects onto"@en ; skos:definition "(Elucidation) spatially projects onto is a relation between some spatiotemporal region b and spatial region c such that at some time t, c is the spatial extent of b at t"@en ; skos:prefLabel "spatially projects onto at some time"@en . ### http://purl.obolibrary.org/obo/BFO_0000217 obo:BFO_0000217 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000216 ; rdf:type owl:FunctionalProperty ; rdfs:domain obo:BFO_0000011 ; rdfs:range obo:BFO_0000006 ; dc:identifier "247-BFO" ; rdfs:label "spatially projects onto at all times"@en ; skos:definition "b spatially projects onto c at all times =Def for all times t, b exists at t implies (b is a spatiotemporal region and c is a spatial region and c is the spatial extent of b at t)"@en ; skos:prefLabel "spatially projects onto at all times"@en . ### http://purl.obolibrary.org/obo/BFO_0000218 obo:BFO_0000218 rdf:type owl:ObjectProperty ; rdfs:domain obo:BFO_0000016 ; rdfs:range obo:BFO_0000040 ; dc:identifier "242-BFO" ; rdfs:label "has material basis"@en ; skos:definition "b has material basis c =Def b is a disposition & c is a material entity & there is some d bearer of b & there is some time t such that c is a continuant part of d at t & d has disposition b because c is a continuant part of d at t"@en ; skos:prefLabel "has material basis at some time"@en . ### http://purl.obolibrary.org/obo/BFO_0000219 obo:BFO_0000219 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000084 ; rdfs:domain obo:BFO_0000031 ; rdfs:range [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ; dc:identifier "253-BFO" ; rdfs:label "generically depends on at all times"@en ; skos:altLabel "g-depends on at all times"@en ; skos:definition "a g-dependent continuant b g-depends on an independent continuant c at all times =Def for all times t, b exists at t implies (there inheres in c an s-dependent continuant which concretizes b at t)"@en ; skos:prefLabel "generically depends on at all times"@en . ### http://purl.obolibrary.org/obo/BFO_0000220 obo:BFO_0000220 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000101 ; rdfs:domain [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ; rdfs:range obo:BFO_0000031 ; dc:identifier "255-BFO" ; rdfs:label "is carrier of at all times"@en ; skos:definition "b is carrier of c at all times =Def for all times t, b exists at t implies (c g-depends on b at t)"@en ; skos:prefLabel "is carrier of at all times"@en . ### http://purl.obolibrary.org/obo/BFO_0000221 obo:BFO_0000221 rdf:type owl:ObjectProperty ; owl:inverseOf obo:BFO_0000222 ; rdfs:domain obo:BFO_0000203 ; rdfs:range obo:BFO_0000008 ; dc:identifier "268-BFO" ; rdfs:label "first instant of"@en ; skos:definition "t first instant of t' =Def t is a temporal instant & t' is a temporal region t' & t precedes all temporal parts of t' other than t"@en ; skos:example "An hour starting at midnight yesterday has first instant midnight yesterday"@en ; skos:prefLabel "first instant of"@en . ### http://purl.obolibrary.org/obo/BFO_0000222 obo:BFO_0000222 rdf:type owl:ObjectProperty , owl:FunctionalProperty ; rdfs:domain obo:BFO_0000008 ; rdfs:range obo:BFO_0000203 ; dc:identifier "261-BFO" ; rdfs:label "has first instant"@en ; skos:definition "t has first instant t' =Def t' first instant of t"@en ; skos:example "The first hour of a year has first instant midnight on December 31"@en ; skos:prefLabel "has first instant"@en . ### http://purl.obolibrary.org/obo/BFO_0000223 obo:BFO_0000223 rdf:type owl:ObjectProperty ; owl:inverseOf obo:BFO_0000224 ; rdfs:domain obo:BFO_0000203 ; rdfs:range obo:BFO_0000008 ; dc:identifier "269-BFO" ; rdfs:label "last instant of"@en ; skos:definition "t last instant of t' =Def t is a temporal instant & t' is a temporal region & all temporal parts of t' other than t precede t"@en ; skos:example "Last midnight is the last instant of yesterday"@en ; skos:prefLabel "last instant of"@en . ### http://purl.obolibrary.org/obo/BFO_0000224 obo:BFO_0000224 rdf:type owl:ObjectProperty , owl:FunctionalProperty ; rdfs:domain obo:BFO_0000008 ; rdfs:range obo:BFO_0000203 ; dc:identifier "215-BFO" ; rdfs:label "has last instant"@en ; skos:definition "t has last instant t' =Def t' last instant of t"@en ; skos:example "The last hour of a year has last instant midnight December 31"@en ; skos:prefLabel "has last instant"@en . ### http://purl.obolibrary.org/obo/ENVO_01003004 obo:ENVO_01003004 rdf:type owl:ObjectProperty ; obo:IAO_0000115 "A relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist through the separation or transformation of a part of the old entity, and the new entity inherits a significant portion of the matter belonging to that part of the old entity."@en ; rdfs:label "derives from part of"@en . ### http://purl.obolibrary.org/obo/IAO_0000136 obo:IAO_0000136 rdf:type owl:ObjectProperty ; rdfs:label "is about"@en . ### http://purl.obolibrary.org/obo/OBI_0000293 obo:OBI_0000293 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000057 ; owl:inverseOf obo:OBI_0000295 ; rdfs:domain obo:OBI_0000011 ; obo:IAO_0000111 "has_specified_input" ; obo:IAO_0000112 "see is_input_of example_of_usage"@en ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "The inverse property of is_specified_input_of"@en ; obo:IAO_0000116 "8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works." ; obo:IAO_0000117 "PERSON: Alan Ruttenberg"@en , "PERSON: Bjoern Peters" , "PERSON: Larry Hunter" , "PERSON: Melanie Coutot" ; obo:IAO_0000412 obo:obi.owl ; rdfs:label "has_specified_input"@en . ### http://purl.obolibrary.org/obo/OBI_0000295 obo:OBI_0000295 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000056 ; rdfs:range obo:OBI_0000011 ; obo:IAO_0000111 "is_specified_input_of" ; obo:IAO_0000112 "some Autologous EBV(Epstein-Barr virus)-transformed B-LCL (B lymphocyte cell line) is_input_for instance of Chromum Release Assay described at https://wiki.cbil.upenn.edu/obiwiki/index.php/Chromium_Release_assay"@en ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of."@en ; obo:IAO_0000117 "Alan Ruttenberg"@en , "PERSON:Bjoern Peters" ; obo:IAO_0000412 obo:obi.owl ; rdfs:label "is_specified_input_of"@en . ### http://purl.obolibrary.org/obo/OBI_0000299 obo:OBI_0000299 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000057 ; owl:inverseOf obo:OBI_0000312 ; rdfs:domain obo:OBI_0000011 ; obo:IAO_0000111 "has_specified_output" ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "The inverse property of is_specified_output_of"@en ; obo:IAO_0000117 "PERSON: Alan Ruttenberg"@en , "PERSON: Bjoern Peters" , "PERSON: Larry Hunter" , "PERSON: Melanie Courtot" ; obo:IAO_0000412 obo:obi.owl ; rdfs:label "has_specified_output"@en . ### http://purl.obolibrary.org/obo/OBI_0000312 obo:OBI_0000312 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000056 ; rdfs:range obo:OBI_0000011 ; obo:IAO_0000111 "is_specified_output_of" ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of."@en ; obo:IAO_0000117 "Alan Ruttenberg"@en , "PERSON:Bjoern Peters" ; obo:IAO_0000412 obo:obi.owl ; rdfs:label "is_specified_output_of"@en . ### http://purl.obolibrary.org/obo/OBI_0000417 obo:OBI_0000417 rdf:type owl:ObjectProperty ; owl:inverseOf obo:OBI_0000833 ; rdfs:domain obo:OBI_0000011 ; rdfs:range obo:IAO_0000005 ; obo:IAO_0000111 "achieves_planned_objective" ; obo:IAO_0000112 "A cell sorting process achieves the objective specification 'material separation objective'" ; obo:IAO_0000114 obo:IAO_0000120 ; obo:IAO_0000115 "This relation obtains between a planned process and a objective specification when the criteria specified in the objective specification are met at the end of the planned process."@en ; obo:IAO_0000117 "BP, AR, PPPB branch" ; obo:IAO_0000119 "PPPB branch derived" ; obo:IAO_0000232 "modified according to email thread from 1/23/09 in accordince with DT and PPPB branch" ; obo:IAO_0000412 obo:obi.owl ; rdfs:label "achieves_planned_objective" . ### http://purl.obolibrary.org/obo/OBI_0000833 obo:OBI_0000833 rdf:type owl:ObjectProperty ; rdfs:label "objective_achieved_by" . ### http://purl.obolibrary.org/obo/RO_0000052 obo:RO_0000052 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002314 ; owl:inverseOf obo:RO_0000053 ; rdf:type owl:FunctionalProperty ; obo:IAO_0000111 "inheres in"@en ; obo:IAO_0000112 "this fragility is a characteristic of this vase"@en , "this red color is a characteristic of this apple"@en ; obo:IAO_0000115 "a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence."@en ; obo:IAO_0000118 "inheres_in"@en ; rdfs:comment "Note that this relation was previously called \"inheres in\", but was changed to be called \"characteristic of\" because BFO2 uses \"inheres in\" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing." ; rdfs:label "characteristic of"@en . ### http://purl.obolibrary.org/obo/RO_0000053 obo:RO_0000053 rdf:type owl:ObjectProperty , owl:InverseFunctionalProperty ; rdfs:range obo:BFO_0000020 ; obo:IAO_0000111 "bearer of"@en ; obo:IAO_0000112 "this apple is bearer of this red color"@en , "this vase is bearer of this fragility"@en ; obo:IAO_0000115 "Inverse of characteristic_of"@en ; obo:IAO_0000116 "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist."@en ; obo:IAO_0000118 "bearer_of"@en , "is bearer of"@en ; rdfs:label "has characteristic"@en . ### http://purl.obolibrary.org/obo/RO_0000056 obo:RO_0000056 rdf:type owl:ObjectProperty ; owl:inverseOf obo:RO_0000057 ; rdfs:domain obo:BFO_0000002 ; rdfs:range obo:BFO_0000003 ; obo:IAO_0000111 "participates in"@en ; obo:IAO_0000112 "this blood clot participates in this blood coagulation"@en , "this input material (or this output material) participates in this process"@en , "this investigator participates in this investigation"@en ; obo:IAO_0000115 "a relation between a continuant and a process, in which the continuant is somehow involved in the process"@en ; obo:IAO_0000118 "participates_in"@en ; obo:IAO_0000412 obo:obi.owl ; rdfs:label "participates in"@en . ### http://purl.obolibrary.org/obo/RO_0000057 obo:RO_0000057 rdf:type owl:ObjectProperty ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000002 ; obo:IAO_0000111 "has participant"@en ; obo:IAO_0000112 "this blood coagulation has participant this blood clot"@en , "this investigation has participant this investigator"@en , "this process has participant this input material (or this output material)"@en ; obo:IAO_0000115 "a relation between a process and a continuant, in which the continuant is somehow involved in the process"@en ; obo:IAO_0000116 "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time."@en ; obo:IAO_0000118 "has_participant"@en ; obo:IAO_0000412 obo:obi.owl ; dc:source "http://www.obofoundry.org/ro/#OBO_REL:has_participant" ; terms:source "http://www.obofoundry.org/ro/#OBO_REL:has_participant" ; rdfs:label "has participant"@en . ### http://purl.obolibrary.org/obo/RO_0000058 obo:RO_0000058 rdf:type owl:ObjectProperty ; owl:inverseOf obo:RO_0000059 ; rdfs:domain obo:BFO_0000031 ; rdfs:range obo:BFO_0000020 ; obo:IAO_0000112 "A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The journal article (a generically dependent continuant) is concretized as the quality (a specifically dependent continuant), and both depend on that copy of the printed journal (an independent continuant)."@en , "An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process)."@en ; obo:IAO_0000115 "A relationship between a generically dependent continuant and a specifically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. A generically dependent continuant may be concretized as multiple specifically dependent continuants."@en ; rdfs:label "is concretized as"@en . ### http://purl.obolibrary.org/obo/RO_0000059 obo:RO_0000059 rdf:type owl:ObjectProperty ; rdfs:domain obo:BFO_0000020 ; rdfs:range obo:BFO_0000031 ; obo:IAO_0000112 "A journal article is an information artifact that inheres in some number of printed journals. For each copy of the printed journal there is some quality that carries the journal article, such as a pattern of ink. The quality (a specifically dependent continuant) concretizes the journal article (a generically dependent continuant), and both depend on that copy of the printed journal (an independent continuant)."@en , "An investigator reads a protocol and forms a plan to carry out an assay. The plan is a realizable entity (a specifically dependent continuant) that concretizes the protocol (a generically dependent continuant), and both depend on the investigator (an independent continuant). The plan is then realized by the assay (a process)."@en ; obo:IAO_0000115 "A relationship between a specifically dependent continuant and a generically dependent continuant, in which the generically dependent continuant depends on some independent continuant in virtue of the fact that the specifically dependent continuant also depends on that same independent continuant. Multiple specifically dependent continuants can concretize the same generically dependent continuant."@en ; rdfs:label "concretizes"@en . ### http://purl.obolibrary.org/obo/RO_0000079 obo:RO_0000079 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000052 ; owl:inverseOf obo:RO_0000085 ; rdfs:domain obo:BFO_0000034 ; obo:IAO_0000112 "this catalysis function is a function of this enzyme"@en ; obo:IAO_0000115 "a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence"@en ; obo:IAO_0000116 "A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists."@en ; obo:IAO_0000118 "function_of"@en , "is function of"@en ; rdfs:comment "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ; rdfs:label "function of"@en . ### http://purl.obolibrary.org/obo/RO_0000080 obo:RO_0000080 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000052 ; owl:inverseOf obo:RO_0000086 ; obo:IAO_0000112 "this red color is a quality of this apple"@en ; obo:IAO_0000115 "a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence"@en ; obo:IAO_0000116 "A quality inheres in its bearer at all times for which the quality exists."@en ; obo:IAO_0000118 "is quality of"@en , "quality_of"@en ; rdfs:comment "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ; rdfs:label "quality of"@en . ### http://purl.obolibrary.org/obo/RO_0000081 obo:RO_0000081 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000052 ; owl:inverseOf obo:RO_0000087 ; obo:IAO_0000112 "this investigator role is a role of this person"@en ; obo:IAO_0000115 "a relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence"@en ; obo:IAO_0000116 "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists."@en ; obo:IAO_0000118 "is role of"@en , "role_of"@en ; rdfs:comment "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ; rdfs:label "role of"@en . ### http://purl.obolibrary.org/obo/RO_0000085 obo:RO_0000085 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000053 ; rdfs:domain obo:BFO_0000004 ; rdfs:range obo:BFO_0000034 ; obo:IAO_0000112 "this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)"@en ; obo:IAO_0000115 "a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence"@en ; obo:IAO_0000116 "A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists."@en ; obo:IAO_0000118 "has_function"@en ; rdfs:label "has function"@en . ### http://purl.obolibrary.org/obo/RO_0000086 obo:RO_0000086 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000053 ; rdfs:range obo:BFO_0000019 ; obo:IAO_0000112 "this apple has quality this red color"@en ; obo:IAO_0000115 "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence"@en ; obo:IAO_0000116 "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist."@en ; obo:IAO_0000118 "has_quality"@en ; rdfs:label "has quality"@en , "has quality" . ### http://purl.obolibrary.org/obo/RO_0000087 obo:RO_0000087 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000053 ; rdfs:domain obo:BFO_0000004 ; rdfs:range obo:BFO_0000023 ; obo:IAO_0000112 "this person has role this investigator role (more colloquially: this person has this role of investigator)"@en ; obo:IAO_0000115 "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence"@en ; obo:IAO_0000116 "A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists."@en ; obo:IAO_0000118 "has_role"@en ; rdfs:label "has role"@en . ### http://purl.obolibrary.org/obo/RO_0000091 obo:RO_0000091 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000053 ; owl:inverseOf obo:RO_0000092 ; rdfs:domain obo:BFO_0000004 ; rdfs:range obo:BFO_0000016 ; obo:IAO_0000115 "a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence"@en ; rdfs:label "has disposition"@en . ### http://purl.obolibrary.org/obo/RO_0000092 obo:RO_0000092 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000052 ; obo:IAO_0000115 "inverse of has disposition" ; oboInOwl:inSubset obo:RO_0002259 ; rdfs:comment "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020." ; rdfs:label "disposition of"@en . ### http://purl.obolibrary.org/obo/RO_0001000 obo:RO_0001000 rdf:type owl:ObjectProperty ; owl:inverseOf obo:RO_0001001 ; obo:IAO_0000112 "this cell derives from this parent cell (cell division)"@en , "this nucleus derives from this parent nucleus (nuclear division)"@en ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "a relation between two distinct material entities, the new entity and the old entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity"@en ; obo:IAO_0000116 "This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops from'."@en ; obo:IAO_0000118 "derives_from"@en ; obo:IAO_0000232 "This relation is taken from the RO2005 version of RO. It may be obsoleted and replaced by relations with different definitions. See also the 'develops from' family of relations." ; oboInOwl:inSubset ; rdfs:label "derives from"@en . ### http://purl.obolibrary.org/obo/RO_0001001 obo:RO_0001001 rdf:type owl:ObjectProperty ; obo:IAO_0000112 "this parent cell derives into this cell (cell division)"@en , "this parent nucleus derives into this nucleus (nuclear division)"@en ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "a relation between two distinct material entities, the old entity and the new entity, in which the new entity begins to exist when the old entity ceases to exist, and the new entity inherits the significant portion of the matter of the old entity"@en ; obo:IAO_0000116 "This is a very general relation. More specific relations are preferred when applicable, such as 'directly develops into'. To avoid making statements about a future that may not come to pass, it is often better to use the backward-looking 'derives from' rather than the forward-looking 'derives into'."@en ; obo:IAO_0000118 "derives_into"@en ; oboInOwl:inSubset ; rdfs:label "derives into"@en . ### http://purl.obolibrary.org/obo/RO_0001015 obo:RO_0001015 rdf:type owl:ObjectProperty ; owl:inverseOf obo:RO_0001025 ; rdf:type owl:TransitiveProperty ; obo:IAO_0000111 "is location of"@en ; obo:IAO_0000112 "my head is the location of my brain"@en , "this cage is the location of this rat"@en ; obo:IAO_0000115 "a relation between two independent continuants, the location and the target, in which the target is entirely within the location"@en ; obo:IAO_0000116 "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"@en ; obo:IAO_0000118 "location_of"@en ; obo:RO_0001900 obo:RO_0001901 ; rdfs:label "location of"@en . ### http://purl.obolibrary.org/obo/RO_0001025 obo:RO_0001025 rdf:type owl:ObjectProperty , owl:TransitiveProperty ; rdfs:domain obo:BFO_0000004 , [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ; rdfs:range obo:BFO_0000004 , [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ; obo:IAO_0000111 "located in"@en ; obo:IAO_0000112 "my brain is located in my head"@en , "this rat is located in this cage"@en ; obo:IAO_0000115 "a relation between two independent continuants, the target and the location, in which the target is entirely within the location"@en ; obo:IAO_0000116 "Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus"@en , "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"@en ; obo:IAO_0000118 "located_in"@en ; obo:RO_0001900 obo:RO_0001901 ; terms:source "http://www.obofoundry.org/ro/#OBO_REL:located_in" ; oboInOwl:inSubset obo:valid_for_go_gp2term ; rdfs:label "located in"@en ; rdfs:seeAlso "https://wiki.geneontology.org/Located_in"^^xsd:anyURI . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0001025 ; owl:annotatedProperty rdfs:domain ; owl:annotatedTarget obo:BFO_0000004 ; obo:IAO_0000116 "This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation." ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0001025 ; owl:annotatedProperty rdfs:range ; owl:annotatedTarget obo:BFO_0000004 ; obo:IAO_0000116 "This is redundant with the more specific 'independent and not spatial region' constraint. We leave in the redundant axiom for use with reasoners that do not use negation." ] . ### http://purl.obolibrary.org/obo/RO_0002010 obo:RO_0002010 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002418 ; rdfs:domain obo:BFO_0000015 ; rdfs:range obo:BFO_0000015 ; obo:IAO_0000115 "x 'regulates in other organism' y if and only if: (x is the realization of a function to exert an effect on the frequency, rate or extent of y) AND (the agents of x are produced by organism o1 and the agents of y are produced by organism o2)." ; obo:IAO_0000117 ; oboInOwl:hasExactSynonym "regulates in other organism" ; oboInOwl:inSubset obo:valid_for_go_ontology ; rdfs:label "regulates in another organism" . ### http://purl.obolibrary.org/obo/RO_0002011 obo:RO_0002011 rdf:type owl:ObjectProperty ; obo:IAO_0000115 "A relationship that holds between a process that regulates a transport process and the entity transported by that process." ; obo:IAO_0000117 ; oboInOwl:inSubset ; rdfs:label "regulates transport of" . ### http://purl.obolibrary.org/obo/RO_0002012 obo:RO_0002012 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000050 , obo:RO_0002418 ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000003 ; obo:IAO_0000115 "A part of relation that applies only between occurrents." ; rdfs:label "occurrent part of" . ### http://purl.obolibrary.org/obo/RO_0002013 obo:RO_0002013 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002334 ; obo:IAO_0000115 "A 'has regulatory component activity' B if A and B are GO molecular functions (GO_0003674), A has_component B and A is regulated by B." ; oboInOwl:created_by ; oboInOwl:creation_date "2017-05-24T09:30:46Z"^^xsd:dateTime ; rdfs:label "has regulatory component activity" . ### http://purl.obolibrary.org/obo/RO_0002014 obo:RO_0002014 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002013 , obo:RO_0002335 ; obo:IAO_0000115 "A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B." ; oboInOwl:created_by ; oboInOwl:creation_date "2017-05-24T09:31:01Z"^^xsd:dateTime ; rdfs:comment "By convention GO molecular functions are classified by their effector function. Internal regulatory functions are treated as components. For example, NMDA glutmate receptor activity is a cation channel activity with positive regulatory component 'glutamate binding' and negative regulatory components including 'zinc binding' and 'magnesium binding'." ; rdfs:label "has negative regulatory component activity" . ### http://purl.obolibrary.org/obo/RO_0002015 obo:RO_0002015 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002013 , obo:RO_0002336 ; obo:IAO_0000115 "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B." ; oboInOwl:created_by ; oboInOwl:creation_date "2017-05-24T09:31:17Z"^^xsd:dateTime ; rdfs:comment "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'." ; rdfs:label "has positive regulatory component activity" . ### http://purl.obolibrary.org/obo/RO_0002016 obo:RO_0002016 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002336 ; oboInOwl:created_by ; oboInOwl:creation_date "2017-05-24T09:36:08Z"^^xsd:dateTime ; rdfs:comment "A has necessary component activity B if A and B are GO molecular functions (GO_0003674), A has_component B and B is necessary for A. For example, ATPase coupled transporter activity has necessary component ATPase activity; transcript factor activity has necessary component DNA binding activity." ; rdfs:label "has necessary component activity" . ### http://purl.obolibrary.org/obo/RO_0002020 obo:RO_0002020 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002313 ; obo:IAO_0000115 "Holds between p and c when p is a transport process or transporter activity and the outcome of this p is to move c from one location to another." ; oboInOwl:created_by ; oboInOwl:creation_date "2017-07-20T17:11:08Z"^^xsd:dateTime ; rdfs:label "transports" . ### http://purl.obolibrary.org/obo/RO_0002021 obo:RO_0002021 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002479 ; obo:IAO_0000115 "A relationship between a process and a barrier, where the process occurs in a region spanning the barrier. For cellular processes the barrier is typically a membrane. Examples include transport across a membrane and membrane depolarization." ; oboInOwl:created_by ; oboInOwl:creation_date "2017-07-20T17:19:37Z"^^xsd:dateTime ; rdfs:label "occurs across" . ### http://purl.obolibrary.org/obo/RO_0002022 obo:RO_0002022 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002334 ; owl:inverseOf obo:RO_0002578 ; oboInOwl:created_by ; oboInOwl:creation_date "2017-09-17T13:52:24Z"^^xsd:dateTime ; rdfs:comment "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." ; rdfs:label "directly regulated by" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0002022 ; owl:annotatedProperty rdfs:comment ; owl:annotatedTarget "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2." ; oboInOwl:hasDbXref ] . ### http://purl.obolibrary.org/obo/RO_0002023 obo:RO_0002023 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002022 ; owl:inverseOf obo:RO_0002630 ; obo:IAO_0000115 "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1." ; oboInOwl:created_by ; oboInOwl:creation_date "2017-09-17T13:52:38Z"^^xsd:dateTime ; rdfs:label "directly negatively regulated by" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0002023 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1." ; oboInOwl:hasDbXref ] . ### http://purl.obolibrary.org/obo/RO_0002024 obo:RO_0002024 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002022 ; owl:inverseOf obo:RO_0002629 ; obo:IAO_0000115 "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1." ; oboInOwl:created_by ; oboInOwl:creation_date "2017-09-17T13:52:47Z"^^xsd:dateTime ; rdfs:label "directly positively regulated by" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0002024 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1." ; oboInOwl:hasDbXref ] . ### http://purl.obolibrary.org/obo/RO_0002081 obo:RO_0002081 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002222 ; obo:IAO_0000117 "David Osumi-Sutherland" ; obo:IAO_0000118 "<="@en ; oboInOwl:inSubset ; rdfs:comment "Primitive instance level timing relation between events" ; rdfs:label "before or simultaneous with"@en . ### http://purl.obolibrary.org/obo/RO_0002082 obo:RO_0002082 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002081 ; rdf:type owl:SymmetricProperty , owl:TransitiveProperty ; obo:IAO_0000115 "x simultaneous with y iff ω(x) = ω(y) and ω(α ) = ω(α), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point and '=' indicates the same instance in time." ; obo:IAO_0000117 , "David Osumi-Sutherland" ; oboInOwl:inSubset ; rdfs:comment "t1 simultaneous_with t2 iff:= t1 before_or_simultaneous_with t2 and not (t1 before t2)"@en ; rdfs:label "simultaneous with"@en . ### http://purl.obolibrary.org/obo/RO_0002083 obo:RO_0002083 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002081 ; rdf:type owl:TransitiveProperty ; obo:IAO_0000117 "David Osumi-Sutherland" ; oboInOwl:inSubset ; rdfs:comment "t1 before t2 iff:= t1 before_or_simulataneous_with t2 and not (t1 simultaeous_with t2)"@en ; rdfs:label "before"@en . ### http://purl.obolibrary.org/obo/RO_0002084 obo:RO_0002084 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002222 ; owl:inverseOf obo:RO_0002093 ; obo:IAO_0000117 "David Osumi-Sutherland" ; oboInOwl:inSubset ; rdfs:comment "Previously had ID http://purl.obolibrary.org/obo/RO_0002122 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range." ; rdfs:label "during which ends"@en . ### http://purl.obolibrary.org/obo/RO_0002085 obo:RO_0002085 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002088 ; owl:inverseOf obo:RO_0002092 ; rdf:type owl:TransitiveProperty ; obo:IAO_0000117 ; obo:IAO_0000118 "di" ; rdfs:comment "Previously had ID http://purl.obolibrary.org/obo/RO_0002124 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range." ; rdfs:label "encompasses"@en . ### http://purl.obolibrary.org/obo/RO_0002086 obo:RO_0002086 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002222 ; rdf:type owl:TransitiveProperty ; obo:IAO_0000117 "David Osumi-Sutherland" ; oboInOwl:inSubset ; rdfs:comment "X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)"@en ; rdfs:label "ends after"@en . ### http://purl.obolibrary.org/obo/RO_0002087 obo:RO_0002087 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000062 ; owl:inverseOf obo:RO_0002090 ; obo:IAO_0000117 "David Osumi-Sutherland" ; obo:IAO_0000118 "starts_at_end_of" ; rdfs:comment "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)"@en ; rdfs:label "immediately preceded by"@en . ### http://purl.obolibrary.org/obo/RO_0002088 obo:RO_0002088 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002222 ; owl:inverseOf obo:RO_0002091 ; obo:IAO_0000117 "David Osumi-Sutherland" ; oboInOwl:inSubset ; rdfs:comment "Previously had ID http://purl.obolibrary.org/obo/RO_0002123 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range." ; rdfs:label "during which starts"@en . ### http://purl.obolibrary.org/obo/RO_0002089 obo:RO_0002089 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002222 ; rdf:type owl:TransitiveProperty ; obo:IAO_0000117 "David Osumi-Sutherland" ; oboInOwl:inSubset ; rdfs:label "starts before"@en . ### http://purl.obolibrary.org/obo/RO_0002090 obo:RO_0002090 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000063 ; obo:IAO_0000117 , "David Osumi-Sutherland" ; obo:IAO_0000118 "ends_at_start_of" , "meets" ; obo:RO_0002575 obo:BFO_0000063 ; oboInOwl:inSubset ; rdfs:comment "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)"@en ; rdfs:label "immediately precedes"@en . ### http://purl.obolibrary.org/obo/RO_0002091 obo:RO_0002091 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002222 ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000003 ; obo:IAO_0000117 "David Osumi-Sutherland" ; obo:IAO_0000118 "io" ; oboInOwl:inSubset ; rdfs:comment "X starts_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (start(X) before_or_simultaneous_with end(Y))"@en ; rdfs:label "starts during"@en . ### http://purl.obolibrary.org/obo/RO_0002092 obo:RO_0002092 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002091 , obo:RO_0002093 ; rdf:type owl:TransitiveProperty ; obo:IAO_0000117 "David Osumi-Sutherland" ; obo:IAO_0000118 "d" , "during" ; oboInOwl:inSubset obo:valid_for_go_annotation_extension , obo:valid_for_go_ontology , obo:valid_for_gocam , ; rdfs:comment "X happens_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (end(X) before_or_simultaneous_with end(Y))"@en ; rdfs:label "happens during"@en ; rdfs:seeAlso "https://wiki.geneontology.org/Happens_during"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0002093 obo:RO_0002093 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002222 ; obo:IAO_0000117 "David Osumi-Sutherland" ; obo:IAO_0000118 "o" , "overlaps" ; oboInOwl:inSubset ; rdfs:comment "X ends_during Y iff: ((start(Y) before_or_simultaneous_with end(X)) AND end(X) before_or_simultaneous_with end(Y). "@en ; rdfs:label "ends during"@en . ### http://purl.obolibrary.org/obo/RO_0002162 obo:RO_0002162 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002320 ; rdfs:range obo:OBI_0100026 ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "x is in taxon y if an only if y is an organism, and the relationship between x and y is one of: part of (reflexive), developmentally preceded by, derives from, secreted by, expressed." ; obo:IAO_0000117 , ; obo:IAO_0000119 , ; oboInOwl:inSubset ; rdfs:comment "Connects a biological entity to its taxon of origin." ; rdfs:label "in taxon" ; rdfs:seeAlso . ### http://purl.obolibrary.org/obo/RO_0002163 obo:RO_0002163 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002323 ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "A is spatially_disjoint_from B if and only if they have no parts in common" ; obo:IAO_0000116 "There are two ways to encode this as a shortcut relation. The other possibility to use an annotation assertion between two classes, and expand this to a disjointness axiom. "@en ; obo:IAO_0000117 ; obo:IAO_0000119 ; obo:IAO_0000232 "Note that it would be possible to use the relation to label the relationship between a near infinite number of structures - between the rings of saturn and my left earlobe. The intent is that this is used for parsiomoniously for disambiguation purposes - for example, between siblings in a jointly exhaustive pairwise disjointness hierarchy" ; obo:IAO_0000424 "BFO_0000051 exactly 0 (BFO_0000050 some ?Y)" ; obo:RO_0001900 obo:RO_0001901 ; oboInOwl:inSubset ; rdfs:label "spatially disjoint from" ; rdfs:seeAlso "https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0002211 obo:RO_0002211 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002411 ; owl:inverseOf obo:RO_0002334 ; rdf:type owl:TransitiveProperty ; rdfs:domain obo:BFO_0000015 ; rdfs:range obo:BFO_0000015 ; obo:IAO_0000115 "p regulates q iff p is causally upstream of q, the execution of p is not constant and varies according to specific conditions, and p influences the rate or magnitude of execution of q due to an effect either on some enabler of q or some enabler of a part of q." ; obo:IAO_0000117 , , ; obo:IAO_0000119 , "GO" ; obo:IAO_0000232 "Regulation precludes parthood; the regulatory process may not be within the regulated process." ; obo:IAO_0000589 "regulates (processual)" ; obo:IAO_0000600 "false"^^xsd:boolean ; oboInOwl:inSubset obo:valid_for_go_annotation_extension , obo:valid_for_go_ontology , obo:valid_for_gocam ; rdfs:label "regulates"@en . ### http://purl.obolibrary.org/obo/RO_0002212 obo:RO_0002212 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002211 , obo:RO_0002305 ; owl:inverseOf obo:RO_0002335 ; obo:IAO_0000115 "p negatively regulates q iff p regulates q, and p decreases the rate or magnitude of execution of q." ; obo:IAO_0000117 ; obo:IAO_0000119 ; obo:IAO_0000589 "negatively regulates (process to process)" ; obo:RO_0004050 obo:RO_0002211 ; oboInOwl:inSubset obo:valid_for_go_annotation_extension , obo:valid_for_go_ontology , obo:valid_for_gocam ; rdfs:label "negatively regulates"@en . ### http://purl.obolibrary.org/obo/RO_0002213 obo:RO_0002213 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002211 , obo:RO_0002304 ; owl:inverseOf obo:RO_0002336 ; rdf:type owl:TransitiveProperty ; obo:IAO_0000115 "p positively regulates q iff p regulates q, and p increases the rate or magnitude of execution of q." ; obo:IAO_0000117 ; obo:IAO_0000119 ; obo:IAO_0000589 "positively regulates (process to process)" ; obo:RO_0004049 obo:RO_0002211 ; oboInOwl:inSubset obo:valid_for_go_annotation_extension , obo:valid_for_go_ontology , obo:valid_for_gocam ; rdfs:label "positively regulates"@en . ### http://purl.obolibrary.org/obo/RO_0002215 obo:RO_0002215 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002216 ; rdfs:domain obo:BFO_0000004 ; rdfs:range obo:BFO_0000015 ; obo:IAO_0000112 "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" , "osteoclast SubClassOf 'capable of' some 'bone resorption'" ; obo:IAO_0000115 "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. " ; obo:IAO_0000117 ; obo:IAO_0000118 "has function realized in" ; obo:IAO_0000119 , ; obo:IAO_0000232 "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." ; oboInOwl:inSubset ; rdfs:label "capable of"@en . ### http://purl.obolibrary.org/obo/RO_0002216 obo:RO_0002216 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002328 , obo:RO_0002500 ; obo:IAO_0000115 "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p." ; obo:IAO_0000117 ; obo:IAO_0000118 "has function in" ; rdfs:label "capable of part of"@en ; rdfs:seeAlso . ### http://purl.obolibrary.org/obo/RO_0002221 obo:RO_0002221 rdf:type owl:ObjectProperty ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "inverse of surrounded by" ; obo:IAO_0000117 ; rdfs:label "surrounds"@en , "surrounds" . ### http://purl.obolibrary.org/obo/RO_0002222 obo:RO_0002222 rdf:type owl:ObjectProperty ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000003 ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000117 ; obo:IAO_0000119 ; obo:IAO_0000232 "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends." ; terms:source "https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1"^^xsd:anyURI ; oboInOwl:inSubset ; rdfs:comment "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations." ; rdfs:label "temporally related to"@en . ### http://purl.obolibrary.org/obo/RO_0002223 obo:RO_0002223 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000050 , obo:RO_0002222 ; owl:inverseOf obo:RO_0002224 ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "inverse of starts with" ; obo:IAO_0000117 , "Chris Mungall" ; obo:IAO_0000119 "Allen" ; oboInOwl:inSubset ; rdfs:label "starts"@en . ### http://purl.obolibrary.org/obo/RO_0002224 obo:RO_0002224 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000051 , obo:RO_0002222 ; rdf:type owl:TransitiveProperty ; obo:IAO_0000112 "Every insulin receptor signaling pathway starts with the binding of a ligand to the insulin receptor" ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "x starts with y if and only if x has part y and the time point at which x starts is equivalent to the time point at which y starts. Formally: α(y) = α(x) ∧ ω(y) < ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." ; obo:IAO_0000117 , "Chris Mungall" ; obo:IAO_0000118 "started by" ; oboInOwl:inSubset ; rdfs:label "starts with"@en . ### http://purl.obolibrary.org/obo/RO_0002229 obo:RO_0002229 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000050 , obo:RO_0002222 ; owl:inverseOf obo:RO_0002230 ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "inverse of ends with" ; obo:IAO_0000117 , "Chris Mungall" ; oboInOwl:inSubset ; rdfs:label "ends"@en . ### http://purl.obolibrary.org/obo/RO_0002230 obo:RO_0002230 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000051 , obo:RO_0002222 ; rdf:type owl:TransitiveProperty ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "x ends with y if and only if x has part y and the time point at which x ends is equivalent to the time point at which y ends. Formally: α(y) > α(x) ∧ ω(y) = ω(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point." ; obo:IAO_0000117 , "Chris Mungall" ; obo:IAO_0000118 "finished by" ; oboInOwl:inSubset ; rdfs:label "ends with"@en . ### http://purl.obolibrary.org/obo/RO_0002231 obo:RO_0002231 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002479 ; rdfs:domain obo:BFO_0000015 ; rdfs:range obo:BFO_0000004 ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "x 'has starts location' y if and only if there exists some process z such that x 'starts with' z and z 'occurs in' y" ; obo:IAO_0000117 ; obo:IAO_0000118 "starts with process that occurs in" ; oboInOwl:inSubset ; rdfs:label "has start location"@en . ### http://purl.obolibrary.org/obo/RO_0002232 obo:RO_0002232 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002479 ; rdfs:domain obo:BFO_0000015 ; rdfs:range obo:BFO_0000004 ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "x 'has end location' y if and only if there exists some process z such that x 'ends with' z and z 'occurs in' y" ; obo:IAO_0000117 ; obo:IAO_0000118 "ends with process that occurs in" ; oboInOwl:inSubset ; rdfs:label "has end location"@en . ### http://purl.obolibrary.org/obo/RO_0002233 obo:RO_0002233 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000057 ; owl:inverseOf obo:RO_0002352 ; rdfs:domain obo:BFO_0000015 ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p." ; obo:IAO_0000117 ; obo:IAO_0000118 "consumes" ; oboInOwl:inSubset obo:valid_for_go_annotation_extension , obo:valid_for_go_ontology , obo:valid_for_gocam , ; rdfs:label "has input"@en ; rdfs:seeAlso "https://wiki.geneontology.org/Has_input"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0002234 obo:RO_0002234 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000057 ; owl:inverseOf obo:RO_0002353 ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "p has output c iff c is a participant in p, c is present at the end of p, and c is not present in the same state at the beginning of p." ; obo:IAO_0000117 ; obo:IAO_0000118 "produces" ; oboInOwl:inSubset obo:valid_for_go_annotation_extension , obo:valid_for_go_ontology , obo:valid_for_gocam , ; rdfs:label "has output"@en ; rdfs:seeAlso "https://wiki.geneontology.org/Has_output"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0002238 obo:RO_0002238 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000057 ; obo:IAO_0000115 "X 'has component participant' Y means X 'has participant' Y and there is a cardinality constraint that specifies the numbers of Ys." ; obo:IAO_0000232 """This object property is needed for axioms using has_participant with a cardinality contrainsts; e.g., has_particpant min 2 object. However, OWL does not permit cardinality constrains with object properties that have property chains (like has_particant) or are transitive (like has_part). If you need an axiom that says 'has_participant min 2 object', you should instead say 'has_component_participant min 2 object'.""" ; terms:contributor ; rdfs:label "has component participant"@en . ### http://purl.obolibrary.org/obo/RO_0002263 obo:RO_0002263 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002264 ; obo:IAO_0000112 "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision." ; obo:IAO_0000115 "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes." ; oboInOwl:inSubset obo:valid_for_go_gp2term ; rdfs:label "acts upstream of" ; rdfs:seeAlso . ### http://purl.obolibrary.org/obo/RO_0002264 obo:RO_0002264 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002500 ; obo:IAO_0000112 "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway." ; obo:IAO_0000115 "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process." ; oboInOwl:hasRelatedSynonym "affects" ; oboInOwl:inSubset obo:valid_for_go_gp2term ; rdfs:label "acts upstream of or within" ; rdfs:seeAlso "https://wiki.geneontology.org/Acts_upstream_of_or_within"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0002304 obo:RO_0002304 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002411 , obo:RO_0004047 ; obo:IAO_0000115 "p is causally upstream of, positive effect q iff p is casually upstream of q, and the execution of p is required for the execution of q." ; obo:RO_0004049 obo:RO_0002411 ; terms:creator ; oboInOwl:inSubset obo:valid_for_go_annotation_extension , obo:valid_for_gocam ; rdfs:comment "holds between x and y if and only if x is causally upstream of y and the progression of x increases the frequency, rate or extent of y" ; rdfs:label "causally upstream of, positive effect" ; rdfs:seeAlso . ### http://purl.obolibrary.org/obo/RO_0002305 obo:RO_0002305 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002411 , obo:RO_0004046 ; obo:IAO_0000115 "p is causally upstream of, negative effect q iff p is casually upstream of q, and the execution of p decreases the execution of q." ; obo:RO_0004050 obo:RO_0002411 ; terms:creator ; oboInOwl:inSubset obo:valid_for_go_annotation_extension , obo:valid_for_gocam ; rdfs:label "causally upstream of, negative effect" ; rdfs:seeAlso . ### http://purl.obolibrary.org/obo/RO_0002313 obo:RO_0002313 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002337 ; obo:IAO_0000115 "Holds between p and c when p is a localization process (localization covers maintenance of localization as well as its establishment) and the outcome of this process is to regulate the localization of c." ; obo:IAO_0000117 ; obo:IAO_0000118 "regulates localization of" ; oboInOwl:inSubset obo:valid_for_go_annotation_extension , obo:valid_for_go_ontology , obo:valid_for_gocam ; rdfs:label "transports or maintains localization of"@en . ### http://purl.obolibrary.org/obo/RO_0002314 obo:RO_0002314 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002502 ; obo:IAO_0000115 "q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w." ; obo:IAO_0000116 "Because part_of is transitive, inheres in is a sub-relation of characteristic of part of" ; obo:IAO_0000117 ; obo:IAO_0000118 "inheres in part of" ; obo:IAO_0000119 ; rdfs:label "characteristic of part of"@en ; rdfs:seeAlso . ### http://purl.obolibrary.org/obo/RO_0002320 obo:RO_0002320 rdf:type owl:ObjectProperty ; obo:IAO_0000115 "A relationship that holds via some environmental process" ; obo:IAO_0000117 ; obo:IAO_0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the process of evolution." ; rdfs:label "evolutionarily related to"@en . ### http://purl.obolibrary.org/obo/RO_0002323 obo:RO_0002323 rdf:type owl:ObjectProperty ; obo:IAO_0000115 "A mereological relationship or a topological relationship" ; obo:IAO_0000117 ; obo:IAO_0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" ; obo:RO_0001900 obo:RO_0001901 ; rdfs:label "mereotopologically related to"@en . ### http://purl.obolibrary.org/obo/RO_0002326 obo:RO_0002326 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002216 , obo:RO_0002329 ; obo:IAO_0000112 "ATP citrate lyase (ACL) in Arabidopsis: it is a heterooctamer, composed of two types of subunits, ACLA and ACLB in a A(4)B(4) stoichiometry. Neither of the subunits expressed alone give ACL activity, but co-expression results in ACL activity. Both subunits contribute_to the ATP citrate lyase activity." , "Subunits of nuclear RNA polymerases: none of the individual subunits have RNA polymerase activity, yet all of these subunits contribute_to DNA-dependent RNA polymerase activity." , "eIF2: has three subunits (alpha, beta, gamma); one binds GTP; one binds RNA; the whole complex binds the ribosome (all three subunits are required for ribosome binding). So one subunit is annotated to GTP binding and one to RNA binding without qualifiers, and all three stand in the contributes_to relationship to \"ribosome binding\". And all three are part_of an eIF2 complex" ; obo:IAO_0000116 """We would like to say if and only if exists c', p' c part_of c' and c' capable_of p and c capable_of p' and p' part_of p then c contributes_to p However, this is not possible in OWL. We instead make this relation a sub-relation of the two chains, which gives us the inference in the one direction.""" ; obo:IAO_0000117 ; obo:IAO_0000232 "In the context of the Gene Ontology, contributes_to may be used only with classes from the molecular function ontology. " ; oboInOwl:inSubset obo:valid_for_go_gp2term ; rdfs:label "contributes to"@en ; rdfs:seeAlso "https://wiki.geneontology.org/Contributes_to"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0002327 obo:RO_0002327 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002215 ; owl:inverseOf obo:RO_0002333 ; obo:IAO_0000112 "a particular instances of akt-2 enables some instance of protein kinase activity" ; obo:IAO_0000115 "c enables p iff c is capable of p and c acts to execute p." ; obo:IAO_0000117 ; obo:IAO_0000118 "catalyzes" , "executes" , "has" , "is catalyzing" , "is executing" ; obo:IAO_0000232 "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized." ; oboInOwl:inSubset obo:valid_for_go_gp2term ; rdfs:label "enables"@en ; rdfs:seeAlso "https://wiki.geneontology.org/Enables"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0002328 obo:RO_0002328 rdf:type owl:ObjectProperty ; obo:IAO_0000115 "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities." ; obo:IAO_0000117 ; obo:IAO_0000232 "This is a grouping relation that collects relations used for the purpose of connecting structure and function" ; rdfs:label "functionally related to"@en . ### http://purl.obolibrary.org/obo/RO_0002329 obo:RO_0002329 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002328 ; obo:IAO_0000115 "this relation holds between c and p when c is part of some c', and c' is capable of p." ; obo:IAO_0000117 ; obo:IAO_0000118 "false"^^xsd:boolean ; rdfs:label "part of structure that is capable of"@en . ### http://purl.obolibrary.org/obo/RO_0002331 obo:RO_0002331 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000056 , obo:RO_0002431 ; obo:IAO_0000115 "c involved_in p if and only if c enables some process p', and p' is part of p" ; obo:IAO_0000117 ; obo:IAO_0000118 "actively involved in" , "enables part of" ; rdfs:label "involved in"@en ; rdfs:seeAlso "https://wiki.geneontology.org/Involved_in"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0002332 obo:RO_0002332 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002328 ; rdfs:domain obo:BFO_0000015 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000112 "every cellular sphingolipid homeostasis process regulates_level_of some sphingolipid" ; obo:IAO_0000115 "p regulates levels of c if p regulates some amount (PATO:0000070) of c" ; obo:IAO_0000117 ; obo:IAO_0000119 ; obo:IAO_0000589 "regulates levels of (process to entity)" ; rdfs:label "regulates levels of"@en . ### http://purl.obolibrary.org/obo/RO_0002333 obo:RO_0002333 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000057 , obo:RO_0002328 ; obo:IAO_0000115 "inverse of enables" ; obo:IAO_0000117 ; oboInOwl:inSubset obo:valid_for_gocam ; rdfs:label "enabled by"@en ; rdfs:seeAlso "https://wiki.geneontology.org/Enabled_by"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0002334 obo:RO_0002334 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002427 ; rdf:type owl:TransitiveProperty ; rdfs:domain obo:BFO_0000015 ; rdfs:range obo:BFO_0000015 ; obo:IAO_0000115 "inverse of regulates" ; obo:IAO_0000117 ; obo:IAO_0000589 "regulated by (processual)" ; oboInOwl:inSubset obo:RO_0002259 ; rdfs:label "regulated by"@en . ### http://purl.obolibrary.org/obo/RO_0002335 obo:RO_0002335 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002334 ; obo:IAO_0000115 "inverse of negatively regulates" ; obo:IAO_0000117 ; oboInOwl:inSubset obo:RO_0002259 ; rdfs:label "negatively regulated by"@en . ### http://purl.obolibrary.org/obo/RO_0002336 obo:RO_0002336 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002334 ; obo:IAO_0000115 "inverse of positively regulates" ; obo:IAO_0000117 ; oboInOwl:inSubset obo:RO_0002259 ; rdfs:label "positively regulated by"@en . ### http://purl.obolibrary.org/obo/RO_0002337 obo:RO_0002337 rdf:type owl:ObjectProperty ; rdfs:domain obo:BFO_0000015 ; rdfs:range obo:BFO_0000002 ; obo:IAO_0000115 "A relationship that holds via some process of localization" ; obo:IAO_0000117 ; obo:IAO_0000232 "Do not use this relation directly. It is a grouping relation." ; rdfs:label "related via localization to"@en . ### http://purl.obolibrary.org/obo/RO_0002338 obo:RO_0002338 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002344 ; obo:IAO_0000115 "This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from some initial location l to some destination." ; obo:IAO_0000117 ; oboInOwl:inSubset obo:valid_for_go_annotation_extension , obo:valid_for_go_ontology , obo:valid_for_gocam ; rdfs:label "has target start location"@en . ### http://purl.obolibrary.org/obo/RO_0002339 obo:RO_0002339 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002344 ; obo:IAO_0000115 "This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from a an initial location to some destination l." ; obo:IAO_0000117 ; oboInOwl:inSubset obo:valid_for_go_annotation_extension , obo:valid_for_go_ontology , obo:valid_for_gocam ; rdfs:label "has target end location"@en . ### http://purl.obolibrary.org/obo/RO_0002340 obo:RO_0002340 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002020 ; obo:IAO_0000115 "Holds between p and c when p is a transportation or localization process and the outcome of this process is to move c to a destination that is part of some s, where the start location of c is part of the region that surrounds s." ; obo:IAO_0000117 ; oboInOwl:inSubset obo:valid_for_go_ontology ; rdfs:label "imports"@en . ### http://purl.obolibrary.org/obo/RO_0002341 obo:RO_0002341 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002337 ; obo:IAO_0000115 "Holds between p and l when p is a transportation or localization process and the outcome of this process is to move c from one location to another, and the route taken by c follows a path that is aligned_with l " ; obo:IAO_0000117 ; rdfs:label "results in transport along"@en . ### http://purl.obolibrary.org/obo/RO_0002342 obo:RO_0002342 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002021 , obo:RO_0002344 ; obo:IAO_0000115 "Holds between p and m when p is a transportation or localization process and the outcome of this process is to move c from one location to another, and the route taken by c follows a path that crosses m." ; obo:IAO_0000117 ; oboInOwl:inSubset obo:valid_for_go_ontology ; rdfs:label "results in transport across"@en . ### http://purl.obolibrary.org/obo/RO_0002344 obo:RO_0002344 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002337 ; obo:IAO_0000112 "'mitochondrial transport' results_in_transport_to_from_or_in some mitochondrion (GO:0005739)" ; obo:IAO_0000117 ; rdfs:label "results in transport to from or in"@en . ### http://purl.obolibrary.org/obo/RO_0002345 obo:RO_0002345 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002020 ; obo:IAO_0000115 "Holds between p and c when p is a transportation or localization process and the outcome of this process is to move c to a destination that is part of some s, where the end location of c is part of the region that surrounds s." ; obo:IAO_0000117 ; oboInOwl:inSubset obo:valid_for_go_ontology ; rdfs:label "exports"@en . ### http://purl.obolibrary.org/obo/RO_0002352 obo:RO_0002352 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000056 , obo:RO_0002328 ; obo:IAO_0000115 "inverse of has input" ; obo:IAO_0000117 ; oboInOwl:inSubset obo:RO_0002259 , ; rdfs:label "input of"@en . ### http://purl.obolibrary.org/obo/RO_0002353 obo:RO_0002353 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000056 , obo:RO_0002328 ; obo:IAO_0000115 "inverse of has output" ; obo:IAO_0000117 ; oboInOwl:inSubset obo:RO_0002259 , ; rdfs:label "output of"@en . ### http://purl.obolibrary.org/obo/RO_0002400 obo:RO_0002400 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002233 ; obo:IAO_0000112 "'protein catabolic process' SubClassOf has_direct_input some protein" ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "p has direct input c iff c is a participant in p, c is present at the start of p, and the state of c is modified during p." ; obo:IAO_0000117 ; obo:IAO_0000118 "directly consumes" ; obo:IAO_0000232 "This is likely to be obsoleted. A candidate replacement would be a new relation 'has bound input' or 'has substrate'" ; rdfs:label "has direct input"@en . ### http://purl.obolibrary.org/obo/RO_0002404 obo:RO_0002404 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000062 , obo:RO_0002427 ; owl:inverseOf obo:RO_0002411 ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "inverse of upstream of" ; obo:IAO_0000117 ; rdfs:label "causally downstream of"@en . ### http://purl.obolibrary.org/obo/RO_0002405 obo:RO_0002405 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002087 , obo:RO_0002404 ; owl:inverseOf obo:RO_0002412 ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000117 ; rdfs:label "immediately causally downstream of"@en . ### http://purl.obolibrary.org/obo/RO_0002407 obo:RO_0002407 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002213 , obo:RO_0012012 ; rdf:type owl:TransitiveProperty ; obo:IAO_0000115 "p indirectly positively regulates q iff p is indirectly causally upstream of q and p positively regulates q." ; obo:IAO_0000117 ; obo:IAO_0000118 "indirectly activates" ; obo:RO_0002579 obo:RO_0002213 ; rdfs:label "indirectly positively regulates"@en ; rdfs:seeAlso "https://wiki.geneontology.org/Indirectly_positively_regulates"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0002409 obo:RO_0002409 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002212 , obo:RO_0012012 ; rdf:type owl:TransitiveProperty ; obo:IAO_0000115 "p indirectly negatively regulates q iff p is indirectly causally upstream of q and p negatively regulates q." ; obo:IAO_0000117 ; obo:IAO_0000118 "indirectly inhibits" ; obo:RO_0002579 obo:RO_0002212 ; rdfs:label "indirectly negatively regulates"@en ; rdfs:seeAlso "https://wiki.geneontology.org/Indirectly_negatively_regulates"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0002410 obo:RO_0002410 rdf:type owl:ObjectProperty ; obo:IAO_0000115 "relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause." ; obo:IAO_0000116 """This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents. To define causal relations in an activity-flow type network, we make use of 3 primitives: * Temporal: how do the intervals of the two occurrents relate? * Is the causal relation regulatory? * Is the influence positive or negative? The first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified. For the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule. For the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral. Each of these 3 primitives can be composed to yield a cross-product of different relation types.""" ; obo:IAO_0000117 ; obo:IAO_0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." ; rdfs:label "causally related to"@en . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0002410 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause." ; oboInOwl:hasDbXref "https://en.wikipedia.org/wiki/Causality" ] . ### http://purl.obolibrary.org/obo/RO_0002411 obo:RO_0002411 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000063 , obo:RO_0002418 ; rdf:type owl:TransitiveProperty ; obo:IAO_0000115 "p is causally upstream of q iff p is causally related to q, the end of p precedes the end of q, and p is not an occurrent part of q." ; obo:IAO_0000117 ; oboInOwl:inSubset obo:valid_for_go_annotation_extension , obo:valid_for_gocam ; rdfs:label "causally upstream of"@en . ### http://purl.obolibrary.org/obo/RO_0002412 obo:RO_0002412 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002090 , obo:RO_0002411 ; obo:IAO_0000115 "p is immediately causally upstream of q iff p is causally upstream of q, and the end of p is coincident with the beginning of q." ; obo:IAO_0000117 ; obo:RO_0002575 obo:RO_0002411 ; rdfs:label "immediately causally upstream of"@en . ### http://purl.obolibrary.org/obo/RO_0002413 obo:RO_0002413 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002412 , obo:RO_0002414 ; obo:IAO_0000115 "p provides input for q iff p is immediately causally upstream of q, and there exists some c such that p has_output c and q has_input c." ; obo:IAO_0000117 ; obo:IAO_0000118 "directly provides input for" ; obo:IAO_0000119 ; obo:IAO_0000589 "directly provides input for (process to process)" ; rdfs:label "provides input for"@en ; rdfs:seeAlso "https://wiki.geneontology.org/Provides_input_for"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0002414 obo:RO_0002414 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0004047 ; rdf:type owl:TransitiveProperty ; rdfs:domain obo:BFO_0000015 ; rdfs:range obo:BFO_0000015 ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "transitive form of directly_provides_input_for" ; obo:IAO_0000117 ; obo:IAO_0000232 "This is a grouping relation that should probably not be used in annotation. Consider instead the child relation 'provides input for'." ; obo:IAO_0000589 "transitively provides input for (process to process)" ; rdfs:label "transitively provides input for"@en . ### http://purl.obolibrary.org/obo/RO_0002418 obo:RO_0002418 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002501 ; owl:inverseOf obo:RO_0002427 ; rdf:type owl:TransitiveProperty ; obo:IAO_0000115 "p is 'causally upstream or within' q iff p is causally related to q, and the end of p precedes, or is coincident with, the end of q." ; obo:IAO_0000116 "We would like to make this disjoint with 'preceded by', but this is prohibited in OWL2" ; obo:IAO_0000117 ; obo:IAO_0000118 "influences (processual)" ; oboInOwl:hasRelatedSynonym "affects" ; rdfs:label "causally upstream of or within" . ### http://purl.obolibrary.org/obo/RO_0002424 obo:RO_0002424 rdf:type owl:ObjectProperty ; obo:IAO_0000116 "false"^^xsd:boolean ; obo:IAO_0000117 ; rdfs:comment "This is an exploratory relation" ; rdfs:label "differs in"@en ; rdfs:seeAlso "https://code.google.com/p/phenotype-ontologies/w/edit/PhenotypeModelCompetencyQuestions"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0002425 obo:RO_0002425 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002424 ; rdfs:range [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000004 obo:BFO_0000015 ) ] ; obo:IAO_0000117 ; rdfs:label "differs in attribute of"@en . ### http://purl.obolibrary.org/obo/RO_0002426 obo:RO_0002426 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002424 ; rdfs:range obo:BFO_0000020 ; obo:IAO_0000117 ; rdfs:label "differs in attribute"@en . ### http://purl.obolibrary.org/obo/RO_0002427 obo:RO_0002427 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002501 ; rdf:type owl:TransitiveProperty ; obo:IAO_0000115 "inverse of causally upstream of or within" ; obo:IAO_0000117 ; obo:IAO_0000119 ; oboInOwl:inSubset obo:RO_0002259 ; rdfs:label "causally downstream of or within" . ### http://purl.obolibrary.org/obo/RO_0002428 obo:RO_0002428 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002263 , obo:RO_0002431 ; obo:IAO_0000115 "c involved in regulation of p if c is involved in some p' and p' regulates some p" ; obo:IAO_0000117 ; rdfs:label "involved in regulation of" . ### http://purl.obolibrary.org/obo/RO_0002429 obo:RO_0002429 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002428 ; obo:IAO_0000115 "c involved in regulation of p if c is involved in some p' and p' positively regulates some p" ; obo:IAO_0000117 ; obo:RO_0004049 obo:RO_0002428 ; rdfs:label "involved in positive regulation of" . ### http://purl.obolibrary.org/obo/RO_0002430 obo:RO_0002430 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002428 ; obo:IAO_0000115 "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p" ; obo:IAO_0000117 ; obo:RO_0004050 obo:RO_0002428 ; rdfs:label "involved in negative regulation of" . ### http://purl.obolibrary.org/obo/RO_0002431 obo:RO_0002431 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002264 , obo:RO_0002328 , obo:RO_0002500 ; obo:IAO_0000115 "c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p" ; obo:IAO_0000116 "OWL does not allow defining object properties via a Union" ; obo:IAO_0000117 ; obo:IAO_0000118 "involved in or reguates" ; rdfs:label "involved in or involved in regulation of" . ### http://purl.obolibrary.org/obo/RO_0002434 obo:RO_0002434 rdf:type owl:ObjectProperty , owl:SymmetricProperty ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000115 "A relationship that holds between two entities in which the processes executed by the two entities are causally connected." ; obo:IAO_0000116 "Considering relabeling as 'pairwise interacts with'"^^xsd:anyURI , "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact." ; obo:IAO_0000117 ; obo:IAO_0000232 "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules." ; oboInOwl:hasExactSynonym "in pairwise interaction with" ; oboInOwl:inSubset ; rdfs:label "interacts with" ; rdfs:seeAlso "http://purl.obolibrary.org/obo/ro/docs/interaction-relations/"^^xsd:anyURI ; skos:closeMatch "http://purl.obolibrary.org/obo/MI_0914"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0002448 obo:RO_0002448 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0011002 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000115 """The entity A, immediately upstream of the entity B, has an activity that regulates an activity performed by B. For example, A and B may be gene products and binding of B by A regulates the kinase activity of B. A and B can be physically interacting but not necessarily. Immediately upstream means there are no intermediate entity between A and B.""" ; obo:IAO_0000117 , ; oboInOwl:hasExactSynonym "molecularly controls" ; rdfs:label "directly regulates activity of" . ### http://purl.obolibrary.org/obo/RO_0002449 obo:RO_0002449 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002448 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000115 """The entity A, immediately upstream of the entity B, has an activity that negatively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A negatively regulates the kinase activity of B.""" ; obo:IAO_0000117 , ; obo:IAO_0000118 "directly inhibits" ; oboInOwl:hasExactSynonym "molecularly decreases activity of" ; rdfs:label "directly negatively regulates activity of" . ### http://purl.obolibrary.org/obo/RO_0002450 obo:RO_0002450 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002448 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000115 """The entity A, immediately upstream of the entity B, has an activity that positively regulates an activity performed by B. For example, A and B may be gene products and binding of B by A positively regulates the kinase activity of B.""" ; obo:IAO_0000117 , ; obo:IAO_0000118 "directly activates" ; oboInOwl:hasExactSynonym "molecularly increases activity of" ; rdfs:label "directly positively regulates activity of" . ### http://purl.obolibrary.org/obo/RO_0002461 obo:RO_0002461 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000056 ; obo:IAO_0000117 ; obo:IAO_0000232 "Experimental: relation used for defining interaction relations. An interaction relation holds when there is an interaction event with two partners. In a directional interaction, one partner is deemed the subject, the other the target" ; rdfs:label "partner in" . ### http://purl.obolibrary.org/obo/RO_0002462 obo:RO_0002462 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002461 ; obo:IAO_0000117 ; obo:IAO_0000232 "Experimental: relation used for defining interaction relations; the meaning of s 'subject participant in' p is determined by the type of p, where p must be a directional interaction process. For example, in a predator-prey interaction process the subject is the predator. We can imagine a reciprocal prey-predatory process with subject and object reversed." ; rdfs:label "subject participant in" . ### http://purl.obolibrary.org/obo/RO_0002463 obo:RO_0002463 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002461 ; obo:IAO_0000117 ; obo:IAO_0000232 "Experimental: relation used for defining interaction relations; the meaning of s 'target participant in' p is determined by the type of p, where p must be a directional interaction process. For example, in a predator-prey interaction process the target is the prey. We can imagine a reciprocal prey-predatory process with subject and object reversed." ; rdfs:label "target participant in" . ### http://purl.obolibrary.org/obo/RO_0002479 obo:RO_0002479 rdf:type owl:ObjectProperty ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000004 ; obo:IAO_0000115 "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c." ; obo:IAO_0000117 ; oboInOwl:inSubset ; rdfs:label "has part that occurs in" . ### http://purl.obolibrary.org/obo/RO_0002487 obo:RO_0002487 rdf:type owl:ObjectProperty ; rdfs:domain obo:BFO_0000004 ; rdfs:range obo:BFO_0000003 ; obo:IAO_0000117 ; obo:IAO_0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, typically connecting an anatomical entity to a biological process or developmental stage." ; rdfs:label "relation between physical entity and a process or stage" . ### http://purl.obolibrary.org/obo/RO_0002488 obo:RO_0002488 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002490 , obo:RO_0002496 ; obo:IAO_0000115 "x existence starts during y if and only if the time point at which x starts is after or equivalent to the time point at which y starts and before or equivalent to the time point at which y ends. Formally: x existence starts during y iff α(x) >= α(y) & α(x) <= ω(y)." ; obo:IAO_0000117 ; rdfs:label "existence starts during" . ### http://purl.obolibrary.org/obo/RO_0002489 obo:RO_0002489 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002488 ; obo:IAO_0000115 "x starts ends with y if and only if the time point at which x starts is equivalent to the time point at which y starts. Formally: x existence starts with y iff α(x) = α(y)." ; obo:IAO_0000117 ; rdfs:label "existence starts with" . ### http://purl.obolibrary.org/obo/RO_0002490 obo:RO_0002490 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002487 ; obo:IAO_0000115 "x existence overlaps y if and only if either (a) the start of x is part of y or (b) the end of x is part of y. Formally: x existence starts and ends during y iff (α(x) >= α(y) & α(x) <= ω(y)) OR (ω(x) <= ω(y) & ω(x) >= α(y))" ; obo:IAO_0000117 ; rdfs:comment "The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription." ; rdfs:label "existence overlaps" . ### http://purl.obolibrary.org/obo/RO_0002491 obo:RO_0002491 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002488 , obo:RO_0002492 ; obo:IAO_0000115 "x exists during y if and only if: 1) the time point at which x begins to exist is after or equal to the time point at which y begins and 2) the time point at which x ceases to exist is before or equal to the point at which y ends. Formally: x existence starts and ends during y iff α(x) >= α(y) & α(x) <= ω(y) & ω(x) <= ω(y) & ω(x) >= α(y)" ; obo:IAO_0000117 ; oboInOwl:hasExactSynonym "exists during" ; rdfs:comment "The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription." ; rdfs:label "existence starts and ends during" . ### http://purl.obolibrary.org/obo/RO_0002492 obo:RO_0002492 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002490 , obo:RO_0002497 ; obo:IAO_0000115 "x existence ends during y if and only if the time point at which x ends is before or equivalent to the time point at which y ends and after or equivalent to the point at which y starts. Formally: x existence ends during y iff ω(x) <= ω(y) and ω(x) >= α(y)." ; obo:IAO_0000117 ; rdfs:comment "The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription." ; rdfs:label "existence ends during" . ### http://purl.obolibrary.org/obo/RO_0002493 obo:RO_0002493 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002492 ; obo:IAO_0000115 "x existence ends with y if and only if the time point at which x ends is equivalent to the time point at which y ends. Formally: x existence ends with y iff ω(x) = ω(y)." ; obo:IAO_0000117 ; rdfs:comment "The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription." ; rdfs:label "existence ends with" . ### http://purl.obolibrary.org/obo/RO_0002496 obo:RO_0002496 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002487 ; obo:IAO_0000115 "x existence starts during or after y if and only if the time point at which x starts is after or equivalent to the time point at which y starts. Formally: x existence starts during or after y iff α (x) >= α (y)." ; obo:IAO_0000117 ; rdfs:comment "The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription." ; rdfs:label "existence starts during or after" . ### http://purl.obolibrary.org/obo/RO_0002497 obo:RO_0002497 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002487 ; obo:IAO_0000115 "x existence ends during or before y if and only if the time point at which x ends is before or equivalent to the time point at which y ends." ; obo:IAO_0000117 ; rdfs:comment "The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription." ; rdfs:label "existence ends during or before" . ### http://purl.obolibrary.org/obo/RO_0002500 obo:RO_0002500 rdf:type owl:ObjectProperty ; owl:equivalentProperty ; rdfs:subPropertyOf obo:RO_0002595 ; owl:inverseOf obo:RO_0002608 ; obo:IAO_0000115 "A relationship between a material entity and a process where the material entity has some causal role that influences the process" ; obo:IAO_0000119 ; rdfs:label "causal agent in process" . ### http://purl.obolibrary.org/obo/RO_0002501 obo:RO_0002501 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002410 ; rdfs:domain obo:BFO_0000003 ; rdfs:range obo:BFO_0000003 ; obo:IAO_0000115 "p is causally related to q if and only if p or any part of p and q or any part of q are linked by a chain of events where each event pair is one where the execution of p influences the execution of q. p may be upstream, downstream, part of, or a container of q." ; obo:IAO_0000117 ; obo:IAO_0000119 ; obo:IAO_0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." ; rdfs:label "causal relation between processes" . ### http://purl.obolibrary.org/obo/RO_0002502 obo:RO_0002502 rdf:type owl:ObjectProperty ; obo:IAO_0000117 ; rdfs:label "depends on" ; rdfs:seeAlso obo:BFO_0000169 . ### http://purl.obolibrary.org/obo/RO_0002505 obo:RO_0002505 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000057 ; obo:IAO_0000112 "'lysine biosynthetic process via diaminopimelate' SubClassOf has_intermediate some diaminopimelate" ; obo:IAO_0000115 "p has intermediate c if and only if p has parts p1, p2 and p1 has output c, and p2 has input c" ; obo:IAO_0000117 ; obo:IAO_0000118 "has intermediate product" ; oboInOwl:inSubset ; rdfs:label "has intermediate" . ### http://purl.obolibrary.org/obo/RO_0002506 obo:RO_0002506 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002410 ; rdfs:domain obo:BFO_0000002 ; rdfs:range obo:BFO_0000002 ; obo:IAO_0000116 "The intent is that the process branch of the causal property hierarchy is primary (causal relations hold between occurrents/processes), and that the material branch is defined in terms of the process branch" ; obo:IAO_0000117 ; obo:IAO_0000119 ; obo:IAO_0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." ; rdfs:label "causal relation between entities" . ### http://purl.obolibrary.org/obo/RO_0002507 obo:RO_0002507 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000050 , obo:RO_0002509 , obo:RO_0002559 ; owl:inverseOf obo:RO_0002508 ; rdfs:domain obo:RO_0002577 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000112 "A coral reef environment is determined by a particular coral reef" ; obo:IAO_0000115 "s determined by f if and only if s is a type of system, and f is a material entity that is part of s, such that f exerts a strong causal influence on the functioning of s, and the removal of f would cause the collapse of s." ; obo:IAO_0000116 "The label for this relation is probably too general for its restricted use, where the domain is a system. It may be relabeled in future" ; obo:IAO_0000117 ; obo:IAO_0000119 ; obo:IAO_0000589 "determined by (system to material entity)" ; terms:creator , ; oboInOwl:inSubset ; rdfs:label "determined by" . ### http://purl.obolibrary.org/obo/RO_0002508 obo:RO_0002508 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002566 ; obo:IAO_0000115 "inverse of determined by" ; obo:IAO_0000117 ; obo:IAO_0000589 "determines (material entity to system)" ; oboInOwl:inSubset obo:RO_0002259 , ; rdfs:label "determines" . ### http://purl.obolibrary.org/obo/RO_0002509 obo:RO_0002509 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002506 ; rdfs:domain obo:RO_0002577 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000115 "s 'determined by part of' w if and only if there exists some f such that (1) s 'determined by' f and (2) f part_of w, or f=w." ; obo:IAO_0000117 ; oboInOwl:inSubset ; rdfs:label "determined by part of" . ### http://purl.obolibrary.org/obo/RO_0002559 obo:RO_0002559 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002506 ; owl:inverseOf obo:RO_0002566 ; obo:IAO_0000117 ; obo:IAO_0000119 ; obo:IAO_0000589 "causally influenced by (entity-centric)" ; rdfs:label "causally influenced by" . ### http://purl.obolibrary.org/obo/RO_0002566 obo:RO_0002566 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002506 ; rdfs:domain obo:BFO_0000002 ; rdfs:range obo:BFO_0000002 ; obo:IAO_0000115 "The entity or characteristic A is causally upstream of the entity or characteristic B, A having an effect on B. An entity corresponds to any biological type of entity as long as a mass is measurable. A characteristic corresponds to a particular specificity of an entity (e.g., phenotype, shape, size)." ; obo:IAO_0000117 , ; obo:IAO_0000119 ; obo:IAO_0000589 "causally influences (entity-centric)" ; rdfs:label "causally influences" . ### http://purl.obolibrary.org/obo/RO_0002573 obo:RO_0002573 rdf:type owl:ObjectProperty ; rdfs:domain obo:BFO_0000020 ; rdfs:range obo:BFO_0000020 ; obo:IAO_0000115 "A relation that holds between an attribute or a qualifier and another attribute." ; obo:IAO_0000117 ; obo:IAO_0000119 ; obo:IAO_0000232 "This relation is intended to be used in combination with PATO, to be able to refine PATO quality classes using modifiers such as 'abnormal' and 'normal'. It has yet to be formally aligned into an ontological framework; it's not clear what the ontological status of the \"modifiers\" are." ; oboInOwl:inSubset ; rdfs:label "has modifier" . ### http://purl.obolibrary.org/obo/RO_0002578 obo:RO_0002578 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002211 , obo:RO_0002412 ; obo:IAO_0000115 "p directly regulates q iff p is immediately causally upstream of q and p regulates q." ; obo:IAO_0000117 ; obo:IAO_0000119 ; obo:IAO_0000589 "directly regulates (processual)" ; obo:RO_0002575 obo:RO_0002211 ; oboInOwl:inSubset obo:valid_for_go_annotation_extension , obo:valid_for_go_ontology , obo:valid_for_gocam ; rdfs:label "directly regulates" . ### http://purl.obolibrary.org/obo/RO_0002583 obo:RO_0002583 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002496 ; obo:IAO_0000115 "holds between x and y if and only if the time point at which x starts is equivalent to the time point at which y ends. Formally: iff α(x) = ω(y)." ; rdfs:label "existence starts at end of" . ### http://purl.obolibrary.org/obo/RO_0002584 obo:RO_0002584 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002328 , obo:RO_0002595 ; obo:IAO_0000112 "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'" ; obo:IAO_0000115 "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p" ; obo:IAO_0000117 ; rdfs:label "has part structure that is capable of" . ### http://purl.obolibrary.org/obo/RO_0002593 obo:RO_0002593 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002497 ; obo:IAO_0000115 "holds between x and y if and only if the time point at which x ends is equivalent to the time point at which y starts. Formally: iff ω(x) = α(y)." ; rdfs:label "existence ends at start of" . ### http://purl.obolibrary.org/obo/RO_0002595 obo:RO_0002595 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002410 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000015 ; obo:IAO_0000115 "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity." ; obo:IAO_0000116 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." ; obo:IAO_0000117 ; obo:IAO_0000119 ; rdfs:label "causal relation between material entity and a process" . ### http://purl.obolibrary.org/obo/RO_0002596 obo:RO_0002596 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002500 ; obo:IAO_0000112 "pyrethroid -> growth" ; obo:IAO_0000115 "Holds between c and p if and only if c is capable of some activity a, and a regulates p." ; obo:IAO_0000119 ; rdfs:label "capable of regulating" . ### http://purl.obolibrary.org/obo/RO_0002597 obo:RO_0002597 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002596 ; obo:IAO_0000115 "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p." ; obo:IAO_0000119 ; rdfs:label "capable of negatively regulating" . ### http://purl.obolibrary.org/obo/RO_0002598 obo:RO_0002598 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002596 ; obo:IAO_0000112 "renin -> arteriolar smooth muscle contraction" ; obo:IAO_0000115 "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p." ; obo:IAO_0000119 ; rdfs:label "capable of positively regulating" . ### http://purl.obolibrary.org/obo/RO_0002600 obo:RO_0002600 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002598 ; obo:IAO_0000112 "benzene -> cancer [CHEBI]" ; obo:IAO_0000115 "Holds between a material entity c and a pathological process p if and only if c is capable of some activity a, where a negatively regulates p." ; obo:IAO_0000118 "causes disease" ; obo:IAO_0000119 ; rdfs:label "capable of upregulating or causing pathological process" . ### http://purl.obolibrary.org/obo/RO_0002608 obo:RO_0002608 rdf:type owl:ObjectProperty ; owl:equivalentProperty ; rdfs:subPropertyOf obo:RO_0002410 ; obo:IAO_0000115 "Inverse of 'causal agent in process'" ; obo:IAO_0000119 ; rdfs:label "process has causal agent" . ### http://purl.obolibrary.org/obo/RO_0002615 obo:RO_0002615 rdf:type owl:ObjectProperty ; owl:inverseOf obo:RO_0003301 ; obo:IAO_0000115 "Inverse of is-model-of" ; rdfs:label "has model" . ### http://purl.obolibrary.org/obo/RO_0002629 obo:RO_0002629 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002213 , obo:RO_0002578 ; obo:IAO_0000115 "p directly positively regulates q iff p is immediately causally upstream of q, and p positively regulates q." ; obo:IAO_0000119 ; obo:IAO_0000589 "directly positively regulates (process to process)" ; obo:RO_0004049 obo:RO_0002578 ; oboInOwl:inSubset obo:valid_for_go_annotation_extension , obo:valid_for_go_ontology , obo:valid_for_gocam ; rdfs:label "directly positively regulates" ; rdfs:seeAlso "https://wiki.geneontology.org/Directly_positively_regulates"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0002630 obo:RO_0002630 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002212 , obo:RO_0002578 ; obo:IAO_0000115 "p directly negatively regulates q iff p is immediately causally upstream of q, and p negatively regulates q." ; obo:IAO_0000119 ; obo:IAO_0000589 "directly negatively regulates (process to process)" ; obo:RO_0004050 obo:RO_0002578 ; oboInOwl:inSubset obo:valid_for_go_annotation_extension , obo:valid_for_go_ontology , obo:valid_for_gocam ; rdfs:label "directly negatively regulates" ; rdfs:seeAlso "https://wiki.geneontology.org/Directly_negatively_regulates"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0003000 obo:RO_0003000 rdf:type owl:ObjectProperty ; owl:inverseOf obo:RO_0003001 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "a produces b if some process that occurs_in a has_output b, where a and b are material entities. Examples: hybridoma cell line produces monoclonal antibody reagent; chondroblast produces avascular GAG-rich matrix." ; obo:IAO_0000117 ; oboInOwl:inSubset ; rdfs:comment "Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue." ; rdfs:label "produces"@en . ### http://purl.obolibrary.org/obo/RO_0003001 obo:RO_0003001 rdf:type owl:ObjectProperty ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "a produced_by b iff some process that occurs_in b has_output a." ; obo:IAO_0000117 ; oboInOwl:inSubset ; rdfs:label "produced by"@en . ### http://purl.obolibrary.org/obo/RO_0003002 obo:RO_0003002 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002449 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000115 "Holds between entity A (a transcription factor) and a nucleic acid B if and only if A down-regulates the expression of B. The nucleic acid can be a gene or an mRNA." ; obo:IAO_0000117 ; rdfs:label "represses expression of" . ### http://purl.obolibrary.org/obo/RO_0003003 obo:RO_0003003 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002450 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000115 "Holds between entity A (a transcription factor) and nucleic acid B if and only if A up-regulates the expression of B. The nucleic acid can be a gene or mRNA." ; obo:IAO_0000117 ; rdfs:label "increases expression of" . ### http://purl.obolibrary.org/obo/RO_0003301 obo:RO_0003301 rdf:type owl:ObjectProperty , owl:AsymmetricProperty , owl:IrreflexiveProperty ; obo:IAO_0000115 "A relation between a biological, experimental, or computational artifact and an entity it is used to study, in virtue of its replicating or approximating features of the studied entity." ; obo:IAO_0000117 ; obo:IAO_0000118 "is used to study"@en ; rdfs:comment "The primary use case for this relation was to link a biological model system such as a cell line or model organism to a disease it is used to investigate, in virtue of the model system exhibiting features similar to that of the disease of interest. But the relation is defined more broadly to support other use cases, such as linking genes in which alterations are made to create model systems to the condition the system is used to interrogate, or computational models to real-world phenomena they are defined to simulate." ; rdfs:label "has role in modeling"@en . ### http://purl.obolibrary.org/obo/RO_0004007 obo:RO_0004007 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0000057 ; obo:IAO_0000115 "p 'has primary input ot output' c iff either (a) p 'has primary input' c or (b) p 'has primary output' c." ; oboInOwl:created_by ; oboInOwl:creation_date "2018-12-13T11:26:17Z"^^xsd:dateTime ; oboInOwl:inSubset obo:valid_for_go_ontology ; rdfs:label "has primary input or output" . ### http://purl.obolibrary.org/obo/RO_0004008 obo:RO_0004008 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002234 , obo:RO_0004007 ; obo:IAO_0000115 "p has primary output c if (a) p has output c and (b) the goal of process is to modify, produce, or transform c." ; oboInOwl:created_by ; oboInOwl:creation_date "2018-12-13T11:26:32Z"^^xsd:dateTime ; oboInOwl:inSubset obo:valid_for_go_ontology ; rdfs:label "has primary output" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0004008 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "p has primary output c if (a) p has output c and (b) the goal of process is to modify, produce, or transform c." ; oboInOwl:hasDbXref , "GOC:dph" , "GOC:kva" , "GOC:pt" ; rdfs:comment "PMID:27812932" ] . ### http://purl.obolibrary.org/obo/RO_0004009 obo:RO_0004009 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002233 , obo:RO_0004007 ; obo:IAO_0000115 "p has primary input c if (a) p has input c and (b) the goal of process is to modify, consume, or transform c." ; oboInOwl:created_by ; oboInOwl:creation_date "2018-12-13T11:26:56Z"^^xsd:dateTime ; oboInOwl:inSubset obo:valid_for_go_ontology ; rdfs:label "has primary input" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0004009 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "p has primary input c if (a) p has input c and (b) the goal of process is to modify, consume, or transform c." ; oboInOwl:hasDbXref , "GOC:dph" , "GOC:kva" , "GOC:pt" ; rdfs:comment "PMID:27812932" ] . ### http://purl.obolibrary.org/obo/RO_0004017 obo:RO_0004017 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002410 ; owl:inverseOf obo:RO_0004018 ; oboInOwl:created_by ; oboInOwl:creation_date "2017-11-05T03:20:01Z"^^xsd:dateTime ; rdfs:label "realizable has basis in" . ### http://purl.obolibrary.org/obo/RO_0004018 obo:RO_0004018 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002410 ; oboInOwl:created_by ; oboInOwl:creation_date "2017-11-05T03:20:29Z"^^xsd:dateTime ; rdfs:label "is basis for realizable" . ### http://purl.obolibrary.org/obo/RO_0004028 obo:RO_0004028 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002410 ; rdfs:domain obo:BFO_0000017 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000115 "A relationship between a realizable entity R (e.g. function or disposition) and a material entity M where R is realized in response to a process that has an input stimulus of M." ; oboInOwl:created_by ; oboInOwl:creation_date "2017-12-26T19:45:49Z"^^xsd:dateTime ; rdfs:label "realized in response to stimulus" . ### http://purl.obolibrary.org/obo/RO_0004031 obo:RO_0004031 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002328 ; obo:IAO_0000115 "Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P." ; oboInOwl:created_by ; oboInOwl:creation_date "2018-01-25T23:20:13Z"^^xsd:dateTime ; rdfs:label "enables subfunction" . ### http://purl.obolibrary.org/obo/RO_0004032 obo:RO_0004032 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002264 ; obo:RO_0004049 obo:RO_0002264 ; oboInOwl:created_by ; oboInOwl:creation_date "2018-01-26T23:49:30Z"^^xsd:dateTime ; oboInOwl:inSubset obo:valid_for_go_gp2term ; rdfs:label "acts upstream of or within, positive effect" ; rdfs:seeAlso "https://wiki.geneontology.org/Acts_upstream_of_or_within,_positive_effect"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0004033 obo:RO_0004033 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002264 ; obo:RO_0004050 obo:RO_0002264 ; oboInOwl:created_by ; oboInOwl:creation_date "2018-01-26T23:49:51Z"^^xsd:dateTime ; oboInOwl:inSubset obo:valid_for_go_gp2term ; rdfs:label "acts upstream of or within, negative effect" ; rdfs:seeAlso "https://wiki.geneontology.org/Acts_upstream_of_or_within,_negative_effect"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0004034 obo:RO_0004034 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002263 , obo:RO_0004032 ; obo:IAO_0000115 "c 'acts upstream of, positive effect' p if c is enables f, and f is causally upstream of p, and the direction of f is positive" ; obo:RO_0004049 obo:RO_0002263 ; oboInOwl:created_by ; oboInOwl:creation_date "2018-01-26T23:53:14Z"^^xsd:dateTime ; oboInOwl:inSubset obo:valid_for_go_gp2term ; rdfs:label "acts upstream of, positive effect" ; rdfs:seeAlso "https://wiki.geneontology.org/Acts_upstream_of,_positive_effect"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0004035 obo:RO_0004035 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002263 , obo:RO_0004033 ; obo:IAO_0000115 "c 'acts upstream of, negative effect' p if c is enables f, and f is causally upstream of p, and the direction of f is negative" ; obo:RO_0004050 obo:RO_0002263 ; oboInOwl:created_by ; oboInOwl:creation_date "2018-01-26T23:53:22Z"^^xsd:dateTime ; oboInOwl:inSubset obo:valid_for_go_gp2term ; rdfs:label "acts upstream of, negative effect" ; rdfs:seeAlso "https://wiki.geneontology.org/Acts_upstream_of,_negative_effect"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0004046 obo:RO_0004046 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002418 ; obo:RO_0004050 obo:RO_0002418 ; oboInOwl:created_by ; oboInOwl:creation_date "2018-03-13T23:55:05Z"^^xsd:dateTime ; rdfs:label "causally upstream of or within, negative effect" ; rdfs:seeAlso "https://wiki.geneontology.org/Causally_upstream_of_or_within,_negative_effect"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0004047 obo:RO_0004047 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002418 ; obo:RO_0004049 obo:RO_0002418 ; oboInOwl:created_by ; oboInOwl:creation_date "2018-03-13T23:55:19Z"^^xsd:dateTime ; rdfs:label "causally upstream of or within, positive effect" ; rdfs:seeAlso . ### http://purl.obolibrary.org/obo/RO_0007000 obo:RO_0007000 rdf:type owl:ObjectProperty ; obo:IAO_0000115 "A relation between two entities, in which one of the entities is any natural or human-influenced factor that directly or indirectly causes a change in the other entity." ; terms:contributor ; rdfs:label "has driver" ; rdfs:seeAlso . ### http://purl.obolibrary.org/obo/RO_0009501 obo:RO_0009501 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002410 ; rdfs:domain obo:BFO_0000017 ; rdfs:range obo:BFO_0000015 ; obo:IAO_0000112 "A drought sensitivity trait that inheres in a whole plant is realized in a systemic response process in response to exposure to drought conditions." , "An inflammatory disease that is realized in response to an inflammatory process occurring in the gut (which is itself the realization of a process realized in response to harmful stimuli in the mucosal lining of th gut)" , "Environmental polymorphism in butterflies: These butterflies have a 'responsivity to day length trait' that is realized in response to the duration of the day, and is realized in developmental processes that lead to increased or decreased pigmentation in the adult morph." ; obo:IAO_0000115 "r 'realized in response to' s iff, r is a realizable (e.g. a plant trait such as responsivity to drought), s is an environmental stimulus (a process), and s directly causes the realization of r." ; terms:contributor , , , ; oboInOwl:hasExactSynonym "triggered by process" ; rdfs:label "realized in response to"@en ; rdfs:seeAlso "https://docs.google.com/document/d/1KWhZxVBhIPkV6_daHta0h6UyHbjY2eIrnON1WIRGgdY/edit"^^xsd:anyURI . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0009501 ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedTarget "triggered by process" ; oboInOwl:hasDbXref ] . ### http://purl.obolibrary.org/obo/RO_0010001 obo:RO_0010001 rdf:type owl:ObjectProperty ; owl:inverseOf obo:RO_0010002 ; rdfs:domain obo:BFO_0000031 ; rdfs:range obo:BFO_0000004 ; obo:IAO_0000112 "Genetic information generically depend on molecules of DNA." , "The novel *War and Peace* generically depends on this copy of the novel." , "The pattern shared by chess boards generically depends on any chess board." , "The score of a symphony g-depends on a copy of the score." , "This pdf file generically depends on this server." ; obo:IAO_0000115 "A generically dependent continuant *b* generically depends on an independent continuant *c* at time *t* means: there inheres in *c* a specifically deendent continuant which concretizes *b* at *t*." ; obo:IAO_0000119 "[072-ISO]" ; oboInOwl:hasExactSynonym "g-depends on" ; rdfs:label "generically depends on" . ### http://purl.obolibrary.org/obo/RO_0010002 obo:RO_0010002 rdf:type owl:ObjectProperty ; rdfs:domain obo:BFO_0000004 ; rdfs:range obo:BFO_0000031 ; obo:IAO_0000112 "Molecules of DNA are carriers of genetic information." , "This copy of *War and Peace* is carrier of the novel written by Tolstoy." , "This hard drive is carrier of these data items." ; obo:IAO_0000115 "*b* is carrier of *c* at time *t* if and only if *c* *g-depends on* *b* at *t*" ; obo:IAO_0000119 "[072-ISO]" ; rdfs:label "is carrier of"@en . ### http://purl.obolibrary.org/obo/RO_0011002 obo:RO_0011002 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002566 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000115 "The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B." ; obo:IAO_0000117 ; rdfs:label "regulates activity of" . ### http://purl.obolibrary.org/obo/RO_0011003 obo:RO_0011003 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002566 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000115 "The entity A has an activity that regulates the quantity or abundance or concentration of the entity B." ; obo:IAO_0000117 ; rdfs:label "regulates quantity of" . ### http://purl.obolibrary.org/obo/RO_0011004 obo:RO_0011004 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0011002 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000115 "The entity A is not immediately upstream of the entity B but A has an activity that regulates an activity performed by B." ; obo:IAO_0000117 ; rdfs:label "indirectly regulates activity of"@en . ### http://purl.obolibrary.org/obo/RO_0011007 obo:RO_0011007 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0011023 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000115 """The entity A has an activity that down-regulates by repression the quantity of B. The down-regulation is due to A having an effect on an intermediate entity (typically a DNA or mRNA element) which can produce B. For example, protein A (transcription factor) indirectly decreases by repression the quantity of protein B (gene product) if and only if A negatively regulates the process of transcription or translation of a nucleic acid element that produces B.""" ; obo:IAO_0000117 ; rdfs:label "decreases by repression quantity of" . ### http://purl.obolibrary.org/obo/RO_0011008 obo:RO_0011008 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0011024 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000115 """The entity A has an activity that up-regulates by expression the quantity of B. The up-regulation is due to A having an effect on an intermediate entity (typically a DNA or mRNA element) which can produce B. For example, protein A (transcription factor) indirectly increases by expression the quantity of protein B (gene product) if and only if A positively regulates the process of transcription or translation of a nucleic acid element that produces B.""" ; obo:IAO_0000117 ; rdfs:label "increases by expression quantity of" . ### http://purl.obolibrary.org/obo/RO_0011009 obo:RO_0011009 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0011021 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000115 "The entity A has an activity that directly positively regulates the quantity of B." ; obo:IAO_0000117 ; rdfs:label "directly positively regulates quantity of" . ### http://purl.obolibrary.org/obo/RO_0011010 obo:RO_0011010 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0011021 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000115 "The entity A has an activity that directly negatively regulates the quantity of B." ; obo:IAO_0000117 ; rdfs:label "directly negatively regulates quantity of" . ### http://purl.obolibrary.org/obo/RO_0011013 obo:RO_0011013 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0011004 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000115 "The entity A is not immediately upstream of the entity B and has an activity that up-regulates an activity performed by B." ; obo:IAO_0000117 ; obo:IAO_0000118 "indirectly activates" ; rdfs:label "indirectly positively regulates activity of" . ### http://purl.obolibrary.org/obo/RO_0011014 obo:RO_0011014 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0011010 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000112 "AKT1 destabilizes quantity of FOXO (interaction from Signor database: SIGNOR-252844)" ; obo:IAO_0000115 "An entity A directly interacts with B and A has an activity that decreases the amount of an entity B by degradating it." ; obo:IAO_0000117 ; rdfs:label "destabilizes quantity of" . ### http://purl.obolibrary.org/obo/RO_0011015 obo:RO_0011015 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0011009 ; rdfs:domain obo:BFO_0000040 ; rdfs:range obo:BFO_0000040 ; obo:IAO_0000112 "AKT1 stabilizes quantity of XIAP (interaction from Signor database: SIGNOR-119488)" ; obo:IAO_0000115 "An entity A physically interacts with B and A has an activity that increases the amount of an entity B by stabilizing it." ; obo:IAO_0000117 ; rdfs:label "stabilizes quantity of" . ### http://purl.obolibrary.org/obo/RO_0011016 obo:RO_0011016 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0011004 ; obo:IAO_0000115 "The entity A is not immediately upstream of the entity B and has an activity that down-regulates an activity performed by B." ; obo:IAO_0000117 ; obo:IAO_0000118 "indirectly inhibits" ; rdfs:label "indirectly negatively regulates activity of" . ### http://purl.obolibrary.org/obo/RO_0011021 obo:RO_0011021 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0011003 ; obo:IAO_0000115 "The entity A, immediately upstream of B, has an activity that directly regulates the quantity of B." ; obo:IAO_0000117 ; rdfs:label "directly regulates quantity of" . ### http://purl.obolibrary.org/obo/RO_0011022 obo:RO_0011022 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0011003 ; obo:IAO_0000115 "The entity A is not immediately upstream of the entity B, but A has an activity that regulates the quantity or abundance or concentration of B." ; obo:IAO_0000117 ; rdfs:label "indirectly regulates quantity of" . ### http://purl.obolibrary.org/obo/RO_0011023 obo:RO_0011023 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0011022 ; obo:IAO_0000115 "The entity A does not physically interact with the entity B, and A has an activity that down-regulates the quantity or abundance or concentration of B." ; obo:IAO_0000117 ; rdfs:label "indirectly negatively regulates quantity of" . ### http://purl.obolibrary.org/obo/RO_0011024 obo:RO_0011024 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0011022 ; obo:IAO_0000115 "The entity A does not physically interact with the entity B, and A has an activity that up-regulates the quantity or abundance or concentration of B." ; obo:IAO_0000117 ; rdfs:label "indirectly positively regulates quantity of" . ### http://purl.obolibrary.org/obo/RO_0012009 obo:RO_0012009 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002304 ; obo:IAO_0000115 "p is constitutively upstream of q iff p is causally upstream of q, p is required for execution of q or a part of q, and the execution of p is approximately constant." ; oboInOwl:created_by ; oboInOwl:creation_date "2022-09-26T06:01:01Z"^^xsd:dateTime ; oboInOwl:inSubset obo:valid_for_go_annotation_extension , obo:valid_for_gocam ; rdfs:label "constitutively upstream of"@en ; rdfs:seeAlso "https://wiki.geneontology.org/Constitutively_upstream_of"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0012010 obo:RO_0012010 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002305 ; obo:IAO_0000115 "p removes input for q iff p is causally upstream of q, there exists some c such that p has_input c and q has_input c, p reduces the levels of c, and c is rate limiting for execution of q." ; oboInOwl:created_by ; oboInOwl:creation_date "2022-09-26T06:06:20Z"^^xsd:dateTime ; oboInOwl:inSubset obo:valid_for_go_annotation_extension , obo:valid_for_gocam ; rdfs:label "removes input for"@en ; rdfs:seeAlso "https://wiki.geneontology.org/Removes_input_for"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/RO_0012011 obo:RO_0012011 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002411 ; obo:IAO_0000115 "p is indirectly causally upstream of q iff p is causally upstream of q and there exists some process r such that p is causally upstream of r and r is causally upstream of q." ; oboInOwl:created_by ; oboInOwl:creation_date "2022-09-26T06:07:17Z"^^xsd:dateTime ; rdfs:label "indirectly causally upstream of"@en . ### http://purl.obolibrary.org/obo/RO_0012012 obo:RO_0012012 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002211 , obo:RO_0012011 ; obo:IAO_0000115 "p indirectly regulates q iff p is indirectly causally upstream of q and p regulates q." ; oboInOwl:created_by ; oboInOwl:creation_date "2022-09-26T06:08:01Z"^^xsd:dateTime ; rdfs:label "indirectly regulates"@en . ### http://purl.obolibrary.org/obo/RO_0012013 obo:RO_0012013 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002010 ; obo:IAO_0000115 "x 'positively regulates in other organism' y if and only if: (x is the realization of a function to increase the frequency, rate or extent of y) AND (the agents of x are produced by organism o1 and the agents of y are produced by organism o2)." ; obo:RO_0004049 obo:RO_0002010 ; terms:contributor ; oboInOwl:creation_date "2023-10-12T10:02:28Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "positively regulates in other organism" ; oboInOwl:inSubset obo:valid_for_go_ontology ; rdfs:label "positively regulates in another organism"@en . ### http://purl.obolibrary.org/obo/RO_0012014 obo:RO_0012014 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002010 ; obo:IAO_0000115 "x 'negatively regulates in other organism' y if and only if: (x is the realization of a function to reduce the frequency, rate or extent of y) AND (the agents of x are produced by organism o1 and the agents of y are produced by organism o2)." ; obo:RO_0004050 obo:RO_0002010 ; terms:contributor ; oboInOwl:creation_date "2023-10-12T10:02:42Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "negatively regulates in other organism" ; oboInOwl:inSubset obo:valid_for_go_ontology ; rdfs:label "negatively regulates in another organism"@en . ### http://purl.obolibrary.org/obo/RO_0015012 obo:RO_0015012 rdf:type owl:ObjectProperty ; obo:IAO_0000115 "q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e." ; rdfs:comment "There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality." ; rdfs:label "reciprocal of" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0015012 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e." ; oboInOwl:hasDbXref "https://orcid.org/0000-0002-6601-2165" ] . ### http://purl.obolibrary.org/obo/RO_0017008 obo:RO_0017008 rdf:type owl:ObjectProperty ; owl:inverseOf obo:RO_0017009 ; obo:IAO_0000112 "biobank organization owns a specimen" , "hospital owns a laboratory facility" ; obo:IAO_0000115 "A primitive relation that holds between entities x and y in which y is at x's full disposal." ; terms:contributor , , ; terms:description "This primitive relation is the foundation of the owner's right to have the owned entity at his/her full disposal." ; oboInOwl:creation_date "2023-03-29T16:57:03Z"^^xsd:dateTime ; rdfs:label "owns"@en . ### http://purl.obolibrary.org/obo/RO_0017009 obo:RO_0017009 rdf:type owl:ObjectProperty ; obo:IAO_0000112 "freezer is owned by a biobank organization" ; obo:IAO_0000115 "Inverse of the owns relation." ; terms:contributor , , ; oboInOwl:creation_date "2023-03-29T17:06:06Z"^^xsd:dateTime ; oboInOwl:inSubset obo:RO_0002259 ; rdfs:label "is owned by"@en . ### http://purl.obolibrary.org/obo/RO_0018027 obo:RO_0018027 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002450 ; obo:IAO_0000112 "mibolerone (CHEBI:34849) is agonist of androgen receptor (PR:P10275)" ; obo:IAO_0000115 "a relation between a ligand (material entity) and a receptor (material entity) that implies the binding of the ligand to the receptor activates some activity of the receptor" ; terms:creator ; rdfs:label "is agonist of" ; rdfs:seeAlso . ### http://purl.obolibrary.org/obo/RO_0018028 obo:RO_0018028 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002449 ; obo:IAO_0000112 "pimavanserin (CHEBI:133017) is inverse agonist of HTR2A (PR:P28223)" ; obo:IAO_0000115 "a relation between a ligand (material entity) and a receptor (material entity) that implies the binding of the ligand to the receptor inhibits some activity of the receptor to below basal level" ; terms:creator ; rdfs:label "is inverse agonist of" ; rdfs:seeAlso . ### http://purl.obolibrary.org/obo/RO_0018029 obo:RO_0018029 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002449 ; obo:IAO_0000112 "tretinoin (CHEBI:15367) is antagonist of Nuclear receptor ROR-beta (PR:Q92753)" ; obo:IAO_0000115 "a relation between a ligand (material entity) and a receptor (material entity) that implies the binding of the ligand to the receptor reduces some activity of the receptor to basal level" ; terms:creator ; rdfs:label "is antagonist of" ; rdfs:seeAlso . ### http://purl.obolibrary.org/obo/RO_0019000 obo:RO_0019000 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0002410 ; rdfs:domain obo:BFO_0000015 ; rdfs:range obo:BFO_0000020 ; obo:IAO_0000115 "A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C." ; terms:contributor ; rdfs:label "regulates characteristic" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0019000 ; owl:annotatedProperty rdfs:range ; owl:annotatedTarget obo:BFO_0000020 ; rdfs:comment """This property had PATO \"quality\" class as range, originally. Nevertheless, RO reuses the term “characteristic” from BFO 2, where it is a synonym of specific dependent continuant. Thus, we revised this axiom accordingly, indicating the “specific dependent continuant” class as the range of this property. See: http://purl.obolibrary.org/obo/PATO_0000001 http://purl.obolibrary.org/obo/RO_0019000"""@en ] . ### http://purl.obolibrary.org/obo/RO_0019001 obo:RO_0019001 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0019000 ; obo:IAO_0000115 "A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C." ; terms:contributor ; rdfs:label "positively regulates characteristic" . ### http://purl.obolibrary.org/obo/RO_0019002 obo:RO_0019002 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:RO_0019000 ; obo:IAO_0000115 "A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C." ; terms:contributor ; rdfs:label "negatively regulates characteristic" . ### http://www.ontologyrepository.com/CommonCoreOntologies/is_about CommonCoreOntologies:is_about rdf:type owl:ObjectProperty ; owl:inverseOf CommonCoreOntologies:is_subject_of ; rdfs:domain CommonCoreOntologies:InformationContentEntity ; rdfs:range obo:BFO_0000001 ; CommonCoreOntologies:definition "A primitive relationship between an Information Content Entity and some Entity."@en ; CommonCoreOntologies:definition_source "http://purl.obolibrary.org/obo/IAO_0000136" ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/InformationEntityOntology"^^xsd:anyURI ; rdfs:label "is about"@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/is_subject_of CommonCoreOntologies:is_subject_of rdf:type owl:ObjectProperty ; rdfs:range CommonCoreOntologies:InformationContentEntity ; CommonCoreOntologies:definition "A primitive relationship between an instance of an Entity and an instance of an Information Content Entity."@en ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/InformationEntityOntology"^^xsd:anyURI ; rdfs:label "is subject of"@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/prescribed_by CommonCoreOntologies:prescribed_by rdf:type owl:ObjectProperty ; rdfs:subPropertyOf CommonCoreOntologies:is_subject_of ; owl:inverseOf CommonCoreOntologies:prescribes ; rdfs:range CommonCoreOntologies:DirectiveInformationContentEntity ; CommonCoreOntologies:definition "x prescribed_by y iff y is an instance of Information Content Entity and x is an instance of Entity, such that y serves as a rule or guide for x if x is an Occurrent, or y serves as a model for x if x is a Continuant."@en ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/InformationEntityOntology"^^xsd:anyURI ; rdfs:label "prescribed by"@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/prescribes CommonCoreOntologies:prescribes rdf:type owl:ObjectProperty ; rdfs:subPropertyOf CommonCoreOntologies:is_about ; rdfs:domain CommonCoreOntologies:DirectiveInformationContentEntity ; CommonCoreOntologies:definition "x prescribes y iff x is an instance of Information Content Entity and y is an instance of Entity, such that x serves as a rule or guide for y if y an Occurrent, or x serves as a model for y if y is a Continuant."@en ; CommonCoreOntologies:example_of_usage "a blueprint serves as a model of some Artifact or Facility" , "a professional code of conduct serves as a set of rules to be followed while acting in a role within that profession" , "an Operations Plan serves as a guide for the tasks that need to be performed to achieve the Objectives of the Operation" ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/InformationEntityOntology"^^xsd:anyURI ; rdfs:label "prescribes"@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/represented_by CommonCoreOntologies:represented_by rdf:type owl:ObjectProperty ; rdfs:subPropertyOf CommonCoreOntologies:is_subject_of ; owl:inverseOf CommonCoreOntologies:represents ; rdfs:range CommonCoreOntologies:RepresentationalInformationContentEntity ; CommonCoreOntologies:definition "y represented_by x iff x is an instance of Information Content Entity, and y is an instance of Entity, and z is carrier of x, such that x is about y in virtue of there existing an isomorphism between characteristics of z and y."@en ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/InformationEntityOntology"^^xsd:anyURI ; rdfs:comment "See notes for inverse property." ; rdfs:label "represented by"@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/represents CommonCoreOntologies:represents rdf:type owl:ObjectProperty ; rdfs:subPropertyOf CommonCoreOntologies:is_about ; rdfs:domain CommonCoreOntologies:RepresentationalInformationContentEntity ; CommonCoreOntologies:definition "x represents y iff x is an instance of Information Content Entity, y is an instance of Entity, and z is carrier of x, such that x is about y in virtue of there existing an isomorphism between characteristics of z and y."@en ; CommonCoreOntologies:elucidation "The relationship that is being defined here is that between the content of a photographic image and its object, between the content of a video and its objects and events, between the content of an audio recording and the sounds or events generating those sounds, or between the content of a written transcript and the verbal event that it transcribes."@en ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/InformationEntityOntology"^^xsd:anyURI ; rdfs:comment "Isomorphism between the carrier of x and the represented entity can be via a direct similarity relation, e.g., grooves in a vinyl record corresponding to sound waves, or linguistic convention, e.g., a court stenographer's transcription of spoken words, as well as others, such as encoding processes for images."@en ; rdfs:label "represents"@en ; skos:scopeNote "Given a stronger temporal interpretation, this property may be functional. For more info please refer to https://github.com/BFO-ontology/BFO-2020/tree/master/src/owl/temporal%20extensions."@en . ### https://www.w3id.org/sco#SCO_0000037 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000057 ; owl:inverseOf ; rdfs:domain obo:BFO_0000015 ; rdfs:range [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000020 obo:BFO_0000031 [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ) ] ; rdfs:comment """We envision revisions of the current SCO theory of agency. This is due to the limited power of explainability of present representation. A sounder and deeper interpretation of the causal role of an agent in an interaction, compared to other participants, is required. Tentative proposal: a possible direction of implementation is towards a telic vision of agency intended as end-point driven. On this more fundamental neutral vision, a second layer of representation may be constructed to model intentionality, goals, and plans in relation to agency. Here, SCO may harmonize and align with UFO-C representation. For insight for discussion see: Guarino, N., & Guizzardi, G. (2024). Processes as variable embodiments. Synthese, 203(4), 104. https://doi.org/10.1007/s11229-024-04505-2 Guizzardi, G., de Almeida Falbo, R., & Guizzardi, R. (2008). Grounding software domain ontologies in the unified foundational ontology (UFO): The case of the ODE. Memorias de la XI Conferencia Iberoamericana de Software Engineering (CIbSE 2008), Recife, Pernambuco, Brasil, February 13-17, 2008, 127–140."""@en , "Common Core Ontologies (CC) provide corresponding properties for this and the “agent at time t” relations. See “see also” annotation”. As these relations apply specifically to the CCO “Agent” class and lack reference to time, the SCO creator decided to establish SCO's own versions of these relations, directly referring to the original source. See “adapted from” annotation." , """Future implementations may involve the introduction of an “act within the system” class, to deepen the characterization of system agency. Insights to implementation may come from the following CCO classes: http://www.ontologyrepository.com/CommonCoreOntologies/Act http://www.ontologyrepository.com/CommonCoreOntologies/IntentionalAct http://www.ontologyrepository.com/CommonCoreOntologies/Agent http://www.ontologyrepository.com/CommonCoreOntologies/AgentCapability The aim is to align SCO and CCO “agent” classes in order to have a shared theory of agency.""" ; rdfs:label "a un agent au temps t"@fr , "ha un agente al tempo t"@it , "has agent at time t"@en ; rdfs:seeAlso "comments to https://www.w3id.org/sco/sco-u#SCO_0000027 and https://www.w3id.org/sco/sco-u#SCO_0000029"@en , """http://www.ontologyrepository.com/CommonCoreOntologies/agent_in http://www.ontologyrepository.com/CommonCoreOntologies/has_agent""" ; skos:definition "A primitive relation between a process x, a continuant y, and a time at which y is causally active in x."@en , "Una relazione primitiva tra un processo x, un continuante y e un tempo t a cui y è causalmente attivo in x."@it , "Une relation primitive entre un processus x, un continuant y et un temps t auquel y est causalement actif en x."@fr ; AnnotationVocabulary:adaptedFrom "https://doi.org/10.1186/gb-2005-6-5-r46" ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://www.w3id.org/sco#SCO_0000038 rdf:type owl:ObjectProperty ; rdfs:subPropertyOf obo:BFO_0000056 ; rdfs:domain [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000020 obo:BFO_0000031 [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ) ] ; rdfs:range obo:BFO_0000015 ; rdfs:comment """We envision revisions of the current SCO theory of agency. This is due to the limited power of explainability of present representation. A sounder and deeper interpretation of the causal role of an agent in an interaction, compared to other participants, is required. Tentative proposal: a possible direction of implementation is towards a telic vision of agency intended as end-point driven. On this more fundamental neutral vision, a second layer of representation may be constructed to model intentionality, goals, and plans in relation to agency. Here, SCO may harmonize and align with UFO-C representation. For insight for discussion see: Guarino, N., & Guizzardi, G. (2024). Processes as variable embodiments. Synthese, 203(4), 104. https://doi.org/10.1007/s11229-024-04505-2 Guizzardi, G., de Almeida Falbo, R., & Guizzardi, R. (2008). Grounding software domain ontologies in the unified foundational ontology (UFO): The case of the ODE. Memorias de la XI Conferencia Iberoamericana de Software Engineering (CIbSE 2008), Recife, Pernambuco, Brasil, February 13-17, 2008, 127–140."""@en ; rdfs:label "agent en au temps t"@fr , "agent in at time t"@en , "agente in al tempo t"@it ; rdfs:seeAlso "comments to https://www.w3id.org/sco/sco-u#SCO_0000027 and https://www.w3id.org/sco/sco-u#SCO_0000029"@en , "See information under the inverse \"has agent at t\" property." ; skos:definition "A primitive relation between a continuant x, a process y, and a time at which x is causally active in y."@en , "Una relazione primitiva tra un continuante x, un processo y e un tempo t a cui x è causalmente attivo in y."@it , "Une relation primitive entre un continuant x, un processus y et un temps t auquel x est causalement actif en y."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ################################################################# # Classes ################################################################# ### http://opendata.inrae.fr/PO2/Ontology/TransformON/Process/Ee0HX3 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002411 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; obo:IAO_0000118 "meat system animal slaughtering"@en ; rdfs:comment """SuMSO developer comment: See comment to \"animal killing\" class."""@en , """SuMSO developer comment: We proposed a definition for this class due to the absence of such in PO2/TrasformON. We equally included supplementary information, such as labels and external references."""@en , """SuMSO developer comment: We use this class to refer to animals that are part of meat systems. The label may be revised."""@en ; rdfs:label "animal slaughtering"@en ; rdfs:seeAlso """SuMSO: See also http://opendata.inrae.fr/ThViande/C461"""@en ; skos:definition """SuMSO definition: A meat processing that involves killing animals and preparing related carcasses for further (possible) processing and distribution for human consumption."""@en ; skos:editorialNote "" ; skos:inScheme ; skos:note "" ; skos:prefLabel ""@de , ""@es , ""@it , "procédé d'abattage"@fr , "slaughtering process"@en ; skos:scopeNote "" . ### http://opendata.inrae.fr/PO2/Ontology/TransformON/Process/gmoO8R rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002404 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002404 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002411 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; oboInOwl:hasExactSynonym """SuMSO: cattle slaughtering"""@en ; oboInOwl:hasRelatedSynonym """SuMSO : cow slaughtering."""@en ; rdfs:comment """SuMSO developer comment: Implementations will detail the representation of cow slaughtering, with regards, for instance, to animal age and type of cow. Additional classes and axioms will be required."""@en , """SuMSO developer comment: We currently referred to cow killing and carcass cutting as the two main activities part of cow slaughtering. Nevertheless, cow slaughtering includes several other activities, such as evisceration, deboning, and carcass cleaning. Implementation will improve this representation including further classes and axioms to refer to other relevant sub-activities. Here is a non-exhaustive list of further activities. Discussions with subject matter experts are required. • Cow carcass bleeding/exsanguination. • Cow carcasses deskinning. • Cow carcass evisceration. • Carcass inspection. • Carcass/ cuts of meat chilling. • Cow carcass washing."""@en , """SuMSO developer comment: We proposed a definition for this class due to the absence of such in PO2/TrasformON. We equally included supplementary information, such as labels and external references."""@en , """SuMSO developer comment: implementations will cover religious and cultural aspects related to cow killing and meat preparation"""@en ; rdfs:label "bovine slaughtering"@en ; rdfs:seeAlso """SuMSO: See also http://opendata.inrae.fr/ThViande/C461"""@en ; skos:definition """SuMSO definition: Animal slaughtering that specifically regards cows."""@en ; skos:editorialNote "" ; skos:inScheme ; skos:note "" ; skos:prefLabel ""@de , ""@es , ""@it , "abattage de bovins"@fr , "bovine slaughtering"@en ; skos:scopeNote "" . ### http://purl.obolibrary.org/obo/AGRO_00000372 obo:AGRO_00000372 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; obo:IAO_0000115 "A person engaged in agriculture, raising living organisms for food or raw materials."@en ; obo:IAO_0000412 obo:agro.owl ; rdfs:comment """SuMSO developer comment: we changed the label from \"farmer\" to \"farmer-role\" to avoid reasoner error detection and improve comprehension of the SuMSO class hierarchy."""@en ; rdfs:label "farmer-role"@en . ### http://purl.obolibrary.org/obo/AGRO_00000426 obo:AGRO_00000426 rdf:type owl:Class ; rdfs:subClassOf obo:AGRO_00002071 , [ owl:intersectionOf ( obo:AGRO_00002071 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000066 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; obo:IAO_0000115 "A planned process in which grazing animals on pasture are managed by humans."@en ; obo:IAO_0000412 obo:agro.owl ; oboInOwl:hasDbXref "http://aims.fao.org/aos/agrovoc/c_3367"@en ; oboInOwl:hasExactSynonym """SuMSO developer: managed grazing"""@en , "grazing" ; rdfs:label "regulation of grazing"@en . ### http://purl.obolibrary.org/obo/AGRO_00000427 obo:AGRO_00000427 rdf:type owl:Class ; rdfs:subClassOf obo:AGRO_00000433 ; obo:IAO_0000115 "Grazing management system developped by Allan Savory. The system is based on a rotational grazing system but doing so at high densities for short intervals. Livestock is used as a tool to increase soil fertility and plant life. Incorporating plant organic matter and manure into the soil promotes the recycling of nutrients."@en ; obo:IAO_0000412 obo:agro.owl ; oboInOwl:hasExactSynonym "holistic grazing"@en ; rdfs:label "holistic planned grazing"@en . ### http://purl.obolibrary.org/obo/AGRO_00000428 obo:AGRO_00000428 rdf:type owl:Class ; rdfs:subClassOf obo:AGRO_00000433 ; obo:IAO_0000115 "A grazing management method that involves moving livestock at least daily between small paddocks, sized to match the number of grazing animals, and split by fence. The goal is for every plant in the grazing cell to be either eaten or walked on and trampled. Grass in each paddock then rests for 60-120 days or more."@en ; obo:IAO_0000412 obo:agro.owl ; oboInOwl:hasExactSynonym "ultra-high density grazing"@en ; rdfs:label "mob grazing"@en . ### http://purl.obolibrary.org/obo/AGRO_00000430 obo:AGRO_00000430 rdf:type owl:Class ; rdfs:subClassOf obo:AGRO_00000426 ; obo:IAO_0000115 "A grazing management system in which the land is subdivided or sectioned off into smaller areas, sometimes called paddocks. The livestock are moved from one paddock to another in order to best promote plant health and growth."@en ; obo:IAO_0000412 obo:agro.owl ; oboInOwl:hasDbXref "http://aims.fao.org/aos/agrovoc/c_6663"@en ; rdfs:label "rotational grazing"@en . ### http://purl.obolibrary.org/obo/AGRO_00000431 obo:AGRO_00000431 rdf:type owl:Class ; rdfs:subClassOf obo:AGRO_00000426 ; obo:IAO_0000115 "A grazing management system in which livestock have unrestricted access to the pasture area throughout the grazing season."@en ; obo:IAO_0000412 obo:agro.owl ; oboInOwl:hasDbXref "http://aims.fao.org/aos/agrovoc/c_36542"@en ; rdfs:label "continuous grazing"@en . ### http://purl.obolibrary.org/obo/AGRO_00000432 obo:AGRO_00000432 rdf:type owl:Class ; rdfs:subClassOf obo:AGRO_00000433 ; obo:IAO_0000115 "A system of grazing which confined animals to a strip or small part of the field for rapid grazing in a short time period.. The rest of the field is protected by a temporary fence, usually electric."@en ; obo:IAO_0000412 obo:agro.owl ; oboInOwl:hasDbXref "http://aims.fao.org/aos/agrovoc/c_7456"@en ; rdfs:label "strip grazing"@en . ### http://purl.obolibrary.org/obo/AGRO_00000433 obo:AGRO_00000433 rdf:type owl:Class ; rdfs:subClassOf obo:AGRO_00000430 ; obo:IAO_0000115 "A rotational grazing management system that implies many paddocks are utilized and livestock are moved on a frequent basis. It provides more stable production during poor growing conditions, greater yield, higher quality, decreased weed and erosion, and uniform soil fertility levels."@en ; obo:IAO_0000412 obo:agro.owl ; oboInOwl:hasExactSynonym "MIG"@en , "Voisin grazing management"@en , "management intensive grazing"@en ; rdfs:label "intensive rotational grazing"@en . ### http://purl.obolibrary.org/obo/AGRO_00000434 obo:AGRO_00000434 rdf:type owl:Class ; rdfs:subClassOf obo:AGRO_00000433 ; obo:IAO_0000115 "An intensive rotational grazing system in which livestock is allowed to graze for a limited time, leaving a leafy stubble, and then is moved to another area."@en ; obo:IAO_0000412 obo:agro.owl ; oboInOwl:hasDbXref "http://aims.fao.org/aos/agrovoc/c_5497"@en ; rdfs:label "controlled grazing"@en . ### http://purl.obolibrary.org/obo/AGRO_00000435 obo:AGRO_00000435 rdf:type owl:Class ; rdfs:subClassOf obo:AGRO_00000433 ; obo:IAO_0000115 "Intensive grazing system in which the field is divided into many small plots of equal size. Grasses are raised with application of large quantities of nitrogenous fertilizers. The livestock are divided into three groups : high, medium and low yeilders. They are let into the paddock by rotation so that the opportunity for grazing most nutritious immature grasses goes to the high yielders followed by medium producers and lastly low yielders."@en ; obo:IAO_0000412 obo:agro.owl ; rdfs:label "hohenheim grazing system"@en . ### http://purl.obolibrary.org/obo/AGRO_00000436 obo:AGRO_00000436 rdf:type owl:Class ; rdfs:subClassOf obo:AGRO_00000430 ; obo:IAO_0000115 "A grazzing management system that allows young farm animals to graze part of the pasture before the adults. It employs a gate through which young animals, but not adults, can pass to get first choice of fresh feed in the next door paddock."@en ; obo:IAO_0000412 obo:agro.owl ; rdfs:label "creep grazing"@en . ### http://purl.obolibrary.org/obo/AGRO_00000437 obo:AGRO_00000437 rdf:type owl:Class ; rdfs:subClassOf obo:AGRO_00000430 ; obo:IAO_0000115 "A gazing management system in which two or more groups of animal, usually with different nutritional needs, graze the same paddock but at different time."@en ; obo:IAO_0000412 obo:agro.owl ; rdfs:label "first-last grazing"@en . ### http://purl.obolibrary.org/obo/AGRO_00002071 obo:AGRO_00002071 rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000066 ; owl:someValuesFrom obo:ENVO_00000114 ] ; rdfs:subClassOf obo:OBI_0000011 , [ owl:intersectionOf ( obo:OBI_0000011 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000117 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; obo:IAO_0000115 "A planned process which occurs in an agricultural field."@en ; obo:IAO_0000412 obo:agro.owl ; dc:creator ; rdfs:comment """SuMSO developer: we suggest revisions to this definition. A planned process may occur in an agricultural field but not being necessarily related to agriculture."""@en ; rdfs:label "agricultural process"@en . ### http://purl.obolibrary.org/obo/BFO_0000001 obo:BFO_0000001 rdf:type owl:Class ; obo:IAO_0000112 "Julius Caesar"@en , "Verdi’s Requiem"@en , "the Second World War"@en , "your body mass index"@en ; obo:IAO_0000116 "BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81"@en ; obo:IAO_0000412 obo:uberon.owl ; dc:identifier "001-BFO" ; rdfs:label "entity"@en ; skos:definition "(Elucidation) An entity is anything that exists or has existed or will exist"@en ; skos:example "Julius Caesar; the Second World War; your body mass index; Verdi's Requiem"@en ; skos:prefLabel "entity"@en . ### http://purl.obolibrary.org/obo/BFO_0000002 obo:BFO_0000002 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000001 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:allValuesFrom obo:BFO_0000002 ] ; owl:disjointWith obo:BFO_0000003 ; obo:BFO_0000179 "continuant" ; obo:BFO_0000180 "Continuant" ; obo:IAO_0000111 "continuant"@en ; obo:IAO_0000115 "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts."@en ; obo:IAO_0000116 "BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240"@en , "Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants"@en ; obo:IAO_0000412 obo:iao.owl , obo:obi.owl , obo:uberon.owl ; obo:IAO_0000600 "A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])"@en ; obo:IAO_0000601 "if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])"@en , "if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])"@en , "if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])"@en ; obo:IAO_0000602 "(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] " , "(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] " , "(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] " , "(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] " ; dc:identifier "008-BFO" ; rdfs:isDefinedBy obo:bfo.owl ; rdfs:label "continuant"@en ; skos:definition "(Elucidation) A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity"@en ; skos:example "A human being; a tennis ball; a cave; a region of space; someone's temperature"@en ; skos:prefLabel "continuant"@en . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000002 ; owl:annotatedProperty obo:IAO_0000116 ; owl:annotatedTarget "Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants"@en ; obo:IAO_0010000 ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000002 ; owl:annotatedProperty obo:IAO_0000600 ; owl:annotatedTarget "A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])"@en ; obo:IAO_0010000 ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000002 ; owl:annotatedProperty obo:IAO_0000601 ; owl:annotatedTarget "if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])"@en ; obo:IAO_0010000 ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000002 ; owl:annotatedProperty obo:IAO_0000601 ; owl:annotatedTarget "if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])"@en ; obo:IAO_0010000 ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000002 ; owl:annotatedProperty obo:IAO_0000601 ; owl:annotatedTarget "if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])"@en ; obo:IAO_0010000 ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000002 ; owl:annotatedProperty obo:IAO_0000602 ; owl:annotatedTarget "(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] " ; obo:IAO_0010000 ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000002 ; owl:annotatedProperty obo:IAO_0000602 ; owl:annotatedTarget "(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] " ; obo:IAO_0010000 ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000002 ; owl:annotatedProperty obo:IAO_0000602 ; owl:annotatedTarget "(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] " ; obo:IAO_0010000 ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000002 ; owl:annotatedProperty obo:IAO_0000602 ; owl:annotatedTarget "(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] " ; obo:IAO_0010000 ] . ### http://purl.obolibrary.org/obo/BFO_0000003 obo:BFO_0000003 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000001 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000050 ; owl:allValuesFrom obo:BFO_0000003 ] ; obo:BFO_0000179 "occurrent" ; obo:BFO_0000180 "Occurrent" ; obo:IAO_0000115 "An entity that has temporal parts and that happens, unfolds or develops through time."@en , "An entity that has temporal parts and that happens, unfolds or develops through time." ; obo:IAO_0000116 "BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region"@en , "BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players."@en , "Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process."@en , "Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame." ; obo:IAO_0000412 obo:agro.owl ; obo:IAO_0000600 "An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])"@en ; obo:IAO_0000601 "Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])"@en , "b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])"@en ; obo:IAO_0000602 "(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] " , "(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] " ; dc:identifier "077-BFO" ; rdfs:isDefinedBy obo:bfo.owl ; rdfs:label "occurrent"@en , "occurrent" ; skos:definition "(Elucidation) An occurrent is an entity that unfolds itself in time or it is the start or end of such an entity or it is a temporal or spatiotemporal region"@en ; skos:example "As for process, history, process boundary, spatiotemporal region, zero-dimensional temporal region, one-dimensional temporal region, temporal interval, temporal instant."@en ; skos:prefLabel "occurrent"@en . ### http://purl.obolibrary.org/obo/BFO_0000004 obo:BFO_0000004 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000002 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:allValuesFrom obo:BFO_0000004 ] ; obo:BFO_0000179 "ic" ; obo:BFO_0000180 "IndependentContinuant" ; obo:IAO_0000112 "a chair"@en , "a heart"@en , "a leg"@en , "a molecule"@en , "a spatial region"@en , "an atom"@en , "an orchestra."@en , "an organism"@en , "the bottom right portion of a human torso"@en , "the interior of your mouth"@en ; obo:IAO_0000115 "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything."@en , "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])"@en ; obo:IAO_0000412 obo:obi.owl , obo:uberon.owl ; obo:IAO_0000589 "anatomical entity (BFO)" ; obo:IAO_0000601 "For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])"@en , "For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])"@en ; obo:IAO_0000602 "(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] " , "(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] " , "(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] " ; dc:identifier "017-BFO" ; rdfs:isDefinedBy obo:bfo.owl ; rdfs:label "independent continuant"@en ; skos:definition "b is an independent continuant =Def b is a continuant & there is no c such that b specifically depends on c or b generically depends on c"@en ; skos:example "An atom; a molecule; an organism; a heart; a chair; the bottom right portion of a human torso; a leg; the interior of your mouth; a spatial region; an orchestra"@en ; skos:prefLabel "independent continuant"@en . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000004 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])"@en ; obo:IAO_0010000 ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000004 ; owl:annotatedProperty obo:IAO_0000601 ; owl:annotatedTarget "For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])"@en ; obo:IAO_0010000 ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000004 ; owl:annotatedProperty obo:IAO_0000601 ; owl:annotatedTarget "For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])"@en ; obo:IAO_0010000 ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000004 ; owl:annotatedProperty obo:IAO_0000602 ; owl:annotatedTarget "(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] " ; obo:IAO_0010000 ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000004 ; owl:annotatedProperty obo:IAO_0000602 ; owl:annotatedTarget "(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] " ; obo:IAO_0010000 ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000004 ; owl:annotatedProperty obo:IAO_0000602 ; owl:annotatedTarget "(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] " ; obo:IAO_0010000 ] . ### http://purl.obolibrary.org/obo/BFO_0000006 obo:BFO_0000006 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000141 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:allValuesFrom obo:BFO_0000006 ] ; dc:identifier "035-BFO" ; rdfs:label "spatial region"@en ; skos:definition "(Elucidation) A spatial region is a continuant entity that is a continuant part of the spatial projection of a portion of spacetime at a given time"@en ; skos:example "As for zero-dimensional spatial region, one-dimensional spatial region, two-dimensional spatial region, three-dimensional spatial region"@en ; skos:prefLabel "spatial region"@en . ### http://purl.obolibrary.org/obo/BFO_0000008 obo:BFO_0000008 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000003 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000132 ; owl:allValuesFrom obo:BFO_0000008 ] , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000139 ; owl:allValuesFrom obo:BFO_0000008 ] ; dc:identifier "100-BFO" ; rdfs:label "temporal region"@en ; skos:definition "(Elucidation) A temporal region is an occurrent over which processes can unfold"@en ; skos:example "As for zero-dimensional temporal region and one-dimensional temporal region"@en ; skos:prefLabel "temporal region"@en . ### http://purl.obolibrary.org/obo/BFO_0000009 obo:BFO_0000009 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000006 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000178 ; owl:allValuesFrom [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000009 obo:BFO_0000018 obo:BFO_0000026 ) ] ] ; dc:identifier "039-BFO" ; rdfs:label "two-dimensional spatial region"@en ; skos:definition "(Elucidation) A two-dimensional spatial region is a spatial region that is a whole consisting of a surface together with zero or more surfaces which may have spatial regions of lower dimension as parts"@en ; skos:example "The surface of a sphere-shaped part of space; an infinitely thin plane in space"@en ; skos:prefLabel "two-dimensional spatial region"@en . ### http://purl.obolibrary.org/obo/BFO_0000011 obo:BFO_0000011 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000003 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000132 ; owl:allValuesFrom obo:BFO_0000011 ] , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000139 ; owl:allValuesFrom obo:BFO_0000011 ] ; dc:identifier "095-BFO" ; rdfs:label "spatiotemporal region"@en ; skos:definition "(Elucidation) A spatiotemporal region is an occurrent that is an occurrent part of spacetime"@en ; skos:example "The spatiotemporal region occupied by the development of a cancer tumour; the spatiotemporal region occupied by an orbiting satellite"@en ; skos:prefLabel "spatiotemporal region"@en ; skos:scopeNote "'Spacetime' here refers to the maximal instance of the universal spatiotemporal region."@en . ### http://purl.obolibrary.org/obo/BFO_0000015 obo:BFO_0000015 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000003 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000117 ; owl:allValuesFrom [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000015 obo:BFO_0000035 ) ] ] , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000132 ; owl:allValuesFrom obo:BFO_0000015 ] , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000139 ; owl:allValuesFrom obo:BFO_0000015 ] ; obo:BFO_0000179 "process" ; obo:BFO_0000180 "Process" ; obo:IAO_0000112 "a process of cell-division, \\ a beating of the heart"@en , "a process of meiosis"@en , "a process of sleeping"@en , "the course of a disease"@en , "the flight of a bird"@en , "the life of an organism"@en , "your process of aging."@en ; obo:IAO_0000115 "An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t."@en , "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])"@en ; obo:IAO_0000116 "BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)"@en ; obo:IAO_0000412 obo:obi.owl ; obo:IAO_0000602 "(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] " ; dc:identifier "083-BFO" ; rdfs:isDefinedBy obo:bfo.owl ; rdfs:label "process"@en ; skos:altLabel "event"@en ; skos:definition "(Elucidation) p is a process means p is an occurrent that has some temporal proper part and for some time t, p has some material entity as participant"@en ; skos:example "An act of selling; the life of an organism; a process of sleeping; a process of cell-division; a beating of the heart; a process of meiosis; the taxiing of an aircraft; the programming of a computer"@en ; skos:prefLabel "process"@en . ### http://purl.obolibrary.org/obo/BFO_0000016 obo:BFO_0000016 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000017 ; owl:disjointWith obo:BFO_0000023 ; dc:identifier "062-BFO" ; rdfs:label "disposition"@en ; skos:altLabel "internally-grounded realizable entity"@en ; skos:definition "(Elucidation) A disposition b is a realizable entity such that if b ceases to exist then its bearer is physically changed & b's realization occurs when and because this bearer is in some special physical circumstances & this realization occurs in virtue of the bearer's physical make-up"@en ; skos:example "An atom of element X has the disposition to decay to an atom of element Y; the cell wall is disposed to transport cellular material through endocytosis and exocytosis; certain people have a predisposition to colon cancer; children are innately disposed to categorize objects in certain ways"@en ; skos:prefLabel "disposition"@en . ### http://purl.obolibrary.org/obo/BFO_0000017 obo:BFO_0000017 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000020 ; owl:disjointWith obo:BFO_0000019 ; obo:BFO_0000179 "realizable" ; obo:BFO_0000180 "RealizableEntity" ; obo:IAO_0000112 "the disposition of this piece of metal to conduct electricity."@en , "the disposition of your blood to coagulate"@en , "the function of your reproductive organs"@en , "the role of being a doctor"@en , "the role of this boundary to delineate where Utah and Colorado meet"@en ; obo:IAO_0000115 "A specifically dependent continuant that inheres in continuant entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances."@en ; obo:IAO_0000412 obo:obi.owl ; obo:IAO_0000600 "To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])"@en ; obo:IAO_0000601 "All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])"@en ; obo:IAO_0000602 "(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] " , "(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] " ; dc:identifier "058-BFO" ; rdfs:isDefinedBy obo:bfo.owl ; rdfs:label "realizable entity"@en ; skos:definition "(Elucidation) A realizable entity is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region & which is of a type some instances of which are realized in processes of a correlated type"@en ; skos:example "The role of being a doctor; the role of this boundary to delineate where Utah and Colorado meet; the function of your reproductive organs; the disposition of your blood to coagulate; the disposition of this piece of metal to conduct electricity"@en ; skos:prefLabel "realizable entity"@en . ### http://purl.obolibrary.org/obo/BFO_0000018 obo:BFO_0000018 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000006 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000178 ; owl:allValuesFrom obo:BFO_0000018 ] ; dc:identifier "037-BFO" ; rdfs:label "zero-dimensional spatial region"@en ; skos:definition "(Elucidation) A zero-dimensional spatial region is one or a collection of more than one spatially disjoint points in space"@en ; skos:example "The spatial region occupied at some time instant by the North Pole"@en ; skos:prefLabel "zero-dimensional spatial region"@en . ### http://purl.obolibrary.org/obo/BFO_0000019 obo:BFO_0000019 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000020 ; obo:BFO_0000179 "quality" ; obo:BFO_0000180 "Quality" ; obo:IAO_0000111 "quality"@en ; obo:IAO_0000112 "the ambient temperature of this portion of air"@en , "the color of a tomato"@en , "the length of the circumference of your waist"@en , "the mass of this piece of gold."@en , "the shape of your nose"@en , "the shape of your nostril"@en ; obo:IAO_0000412 obo:iao.owl , obo:obi.owl ; obo:IAO_0000600 "a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized. (axiom label in BFO2 Reference: [055-001])"@en ; obo:IAO_0000601 "If an entity is a quality at any time that it exists, then it is a quality at every time that it exists. (axiom label in BFO2 Reference: [105-001])"@en ; obo:IAO_0000602 "(forall (x) (if (Quality x) (SpecificallyDependentContinuant x))) // axiom label in BFO2 CLIF: [055-001] " , "(forall (x) (if (exists (t) (and (existsAt x t) (Quality x))) (forall (t_1) (if (existsAt x t_1) (Quality x))))) // axiom label in BFO2 CLIF: [105-001] " ; dc:identifier "055-BFO" ; rdfs:isDefinedBy obo:bfo.owl ; rdfs:label "quality"@en ; skos:definition "(Elucidation) A quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized"@en ; skos:example "The colour of a tomato; the ambient temperature of this portion of air; the length of the circumference of your waist; the shape of your nose; the shape of your nostril; the mass of this piece of gold"@en ; skos:prefLabel "quality"@en . ### http://purl.obolibrary.org/obo/BFO_0000020 obo:BFO_0000020 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000002 ; obo:IAO_0000115 "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])"@en ; dc:identifier "050-BFO" ; rdfs:label "specifically dependent continuant"@en ; skos:definition "b is a specifically dependent continuant =Def b is a continuant & there is some independent continuant c which is not a spatial region & which is such that b specifically depends on c"@en ; skos:example "(with multiple bearers) John's love for Mary; the ownership relation between John and this statue; the relation of authority between John and his subordinates"@en , "(with one bearer) The mass of this tomato; the pink colour of a medium rare piece of grilled filet mignon at its centre; the smell of this portion of mozzarella; the disposition of this fish to decay; the role of being a doctor; the function of this heart to pump blood; the shape of this hole"@en ; skos:prefLabel "specifically dependent continuant"@en . ### http://purl.obolibrary.org/obo/BFO_0000023 obo:BFO_0000023 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000017 ; obo:IAO_0000115 "A realizable entity the manifestation of which brings about some result or end that is not essential to a continuant in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant in some kinds of natural, social or institutional contexts."@en ; dc:identifier "061-BFO" ; rdfs:label "role"@en ; skos:altLabel "externally-grounded realizable entity"@en ; skos:definition "(Elucidation) A role b is a realizable entity such that b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be & b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed"@en ; skos:example "The priest role; the student role; the role of subject in a clinical trial; the role of a stone in marking a property boundary; the role of a boundary to demarcate two neighbouring administrative territories; the role of a building in serving as a military target"@en ; skos:prefLabel "role"@en . ### http://purl.obolibrary.org/obo/BFO_0000024 obo:BFO_0000024 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000040 ; dc:identifier "027-BFO" ; rdfs:label "fiat object part"@en ; skos:definition "(Elucidation) A fiat object part b is a material entity & such that if b exists then it is continuant part of some object c & demarcated from the remainder of c by one or more fiat surfaces"@en ; skos:example "The upper and lower lobes of the left lung; the dorsal and ventral surfaces of the body; the Western hemisphere of the Earth; the FMA:regional parts of an intact human body"@en ; skos:prefLabel "fiat object part"@en . ### http://purl.obolibrary.org/obo/BFO_0000026 obo:BFO_0000026 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000006 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000178 ; owl:allValuesFrom [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000018 obo:BFO_0000026 ) ] ] ; dc:identifier "038-BFO" ; rdfs:label "one-dimensional spatial region"@en ; skos:definition "(Elucidation) A one-dimensional spatial region is a whole consisting of a line together with zero or more lines which may have points as parts"@en ; skos:example "An edge of a cube-shaped portion of space; a line connecting two points; two parallel lines extended in space"@en ; skos:prefLabel "one-dimensional spatial region"@en . ### http://purl.obolibrary.org/obo/BFO_0000027 obo:BFO_0000027 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000040 ; dc:identifier "025-BFO" ; rdfs:label "object aggregate"@en ; skos:definition "(Elucidation) An object aggregate is a material entity consisting exactly of a plurality (≥1) of objects as member parts which together form a unit"@en ; skos:example "The aggregate of the musicians in a symphony orchestra and their instruments; the aggregate of bearings in a constant velocity axle joint; the nitrogen atoms in the atmosphere; a collection of cells in a blood biobank"@en ; skos:prefLabel "object aggregate"@en ; skos:scopeNote "'Exactly' means that there are no parts of the object aggregate other than its member parts." , "The unit can, at certain times, consist of exactly one object, for example, when a wolf litter loses all but one of its pups, but it must at some time have a plurality of member parts." . ### http://purl.obolibrary.org/obo/BFO_0000028 obo:BFO_0000028 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000006 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000178 ; owl:allValuesFrom obo:BFO_0000006 ] ; dc:identifier "040-BFO" ; rdfs:label "three-dimensional spatial region"@en ; skos:definition "(Elucidation) A three-dimensional spatial region is a whole consisting of a spatial volume together with zero or more spatial volumes which may have spatial regions of lower dimension as parts"@en ; skos:example "A cube-shaped region of space; a sphere-shaped region of space; the region of space occupied by all and only the planets in the solar system at some point in time"@en ; skos:prefLabel "three-dimensional spatial region"@en . ### http://purl.obolibrary.org/obo/BFO_0000029 obo:BFO_0000029 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000141 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:allValuesFrom [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000029 obo:BFO_0000040 ) ] ] , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000178 ; owl:allValuesFrom [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000029 obo:BFO_0000140 ) ] ] , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000210 ; owl:allValuesFrom obo:BFO_0000028 ] ; dc:identifier "034-BFO" ; rdfs:label "site"@en ; skos:definition "(Elucidation) A site is a three-dimensional immaterial entity whose boundaries either (partially or wholly) coincide with the boundaries of one or more material entities or have locations determined in relation to some material entity"@en ; skos:example "A hole in a portion of cheese; a rabbit hole; the Grand Canyon; the Piazza San Marco; the kangaroo-joey-containing hole of a kangaroo pouch; your left nostril (a fiat part - the opening - of your left nasal cavity); the lumen of your gut; the hold of a ship; the interior of the trunk of your car; hole in an engineered floor joist"@en ; skos:prefLabel "site"@en . ### http://purl.obolibrary.org/obo/BFO_0000030 obo:BFO_0000030 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000040 ; dc:identifier "024-BFO" ; rdfs:label "object"@en ; skos:definition "(Elucidation) An object is a material entity which manifests causal unity & is of a type instances of which are maximal relative to the sort of causal unity manifested"@en ; skos:example "An organism; a fish tank; a planet; a laptop; a valve; a block of marble; an ice cube"@en ; skos:prefLabel "object"@en ; skos:scopeNote "A description of three primary sorts of causal unity is provided in Basic Formal Ontology 2.0. Specification and User Guide"@en . ### http://purl.obolibrary.org/obo/BFO_0000031 obo:BFO_0000031 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000002 ; obo:BFO_0000179 "gdc" ; obo:BFO_0000180 "GenericallyDependentContinuant" ; obo:IAO_0000112 "The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity."@en , "the pdf file on your laptop, the pdf file that is a copy thereof on my laptop"@en , "the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule."@en ; obo:IAO_0000115 "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])"@en ; obo:IAO_0000412 obo:iao.owl ; obo:IAO_0000602 "(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001] " ; dc:identifier "074-BFO" ; rdfs:isDefinedBy obo:bfo.owl ; rdfs:label "generically dependent continuant"@en ; skos:altLabel "g-dependent continuant"@en ; skos:definition "(Elucidation) A generically dependent continuant is an entity that exists in virtue of the fact that there is at least one of what may be multiple copies which is the content or the pattern that multiple copies would share"@en ; skos:example "The pdf file on your laptop; the pdf file that is a copy thereof on my laptop; the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule; the content that is shared by a string of dots and dashes written on a page and the transmitted Morse code signal; the content of a sentence; an engineering blueprint"@en ; skos:prefLabel "generically dependent continuant"@en . ### http://purl.obolibrary.org/obo/BFO_0000034 obo:BFO_0000034 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000016 ; dc:identifier "064-BFO" ; rdfs:label "function"@en ; skos:definition "(Elucidation) A function is a disposition that exists in virtue of its bearer's physical make-up & this physical make-up is something the bearer possesses because it came into being either through evolution (in the case of natural biological entities) or through intentional design (in the case of artefacts) in order to realize processes of a certain sort"@en ; skos:example "The function of a hammer to drive in nails; the function of a heart pacemaker to regulate the beating of a heart through electricity"@en ; skos:prefLabel "function"@en . ### http://purl.obolibrary.org/obo/BFO_0000035 obo:BFO_0000035 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000003 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000117 ; owl:allValuesFrom obo:BFO_0000035 ] , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000121 ; owl:allValuesFrom obo:BFO_0000035 ] , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000132 ; owl:allValuesFrom [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000015 obo:BFO_0000035 ) ] ] , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000139 ; owl:allValuesFrom [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000015 obo:BFO_0000035 ) ] ] ; dc:identifier "084-BFO" ; rdfs:label "process boundary"@en ; skos:definition "p is a process boundary =Def p is a temporal part of a process & p has no proper temporal parts"@en ; skos:example "The boundary between the 2nd and 3rd year of your life"@en ; skos:prefLabel "process boundary"@en . ### http://purl.obolibrary.org/obo/BFO_0000038 obo:BFO_0000038 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000008 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000121 ; owl:allValuesFrom [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000038 obo:BFO_0000148 ) ] ] , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000139 ; owl:allValuesFrom obo:BFO_0000038 ] ; owl:disjointWith obo:BFO_0000148 ; dc:identifier "103-BFO" ; rdfs:label "one-dimensional temporal region"@en ; skos:definition "(Elucidation) A one-dimensional temporal region is a temporal region that is a whole that has a temporal interval and zero or more temporal intervals and temporal instants as parts"@en ; skos:example "The temporal region during which a process occurs"@en ; skos:prefLabel "one-dimensional temporal region"@en . ### http://purl.obolibrary.org/obo/BFO_0000040 obo:BFO_0000040 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000004 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:allValuesFrom obo:BFO_0000040 ] , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000178 ; owl:allValuesFrom [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000029 obo:BFO_0000040 obo:BFO_0000140 ) ] ] ; owl:disjointWith obo:BFO_0000141 ; obo:BFO_0000179 "material" ; obo:BFO_0000180 "MaterialEntity" ; obo:IAO_0000111 "material entity"@en ; obo:IAO_0000112 "a flame"@en , "a forest fire"@en , "a human being"@en , "a hurricane"@en , "a photon"@en , "a puff of smoke"@en , "a sea wave"@en , "a tornado"@en , "an aggregate of human beings."@en , "an energy wave"@en , "an epidemic"@en , "the undetached arm of a human being"@en ; obo:IAO_0000115 "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time."@en ; obo:IAO_0000116 "BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60"@en , "BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity."@en , "BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here."@en ; obo:IAO_0000412 obo:cl.owl , obo:ido.owl , obo:obi.owl , obo:uberon.owl , obo:vo.owl ; obo:IAO_0000600 "A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])"@en ; obo:IAO_0000601 "Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])"@en , "every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])"@en ; obo:IAO_0000602 "(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] " , "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] " , "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] " ; dc:identifier "019-BFO" ; rdfs:isDefinedBy obo:bfo.owl ; rdfs:label "material entity"@en ; skos:definition "(Elucidation) A material entity is an independent continuant has some portion of matter as continuant part"@en ; skos:example "A human being; the undetached arm of a human being; an aggregate of human beings"@en ; skos:prefLabel "material entity"@en . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000040 ; owl:annotatedProperty obo:IAO_0000600 ; owl:annotatedTarget "A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])"@en ; obo:IAO_0010000 ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000040 ; owl:annotatedProperty obo:IAO_0000601 ; owl:annotatedTarget "Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])"@en ; obo:IAO_0010000 ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000040 ; owl:annotatedProperty obo:IAO_0000601 ; owl:annotatedTarget "every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])"@en ; obo:IAO_0010000 ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000040 ; owl:annotatedProperty obo:IAO_0000602 ; owl:annotatedTarget "(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] " ; obo:IAO_0010000 ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000040 ; owl:annotatedProperty obo:IAO_0000602 ; owl:annotatedTarget "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] " ; obo:IAO_0010000 ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:BFO_0000040 ; owl:annotatedProperty obo:IAO_0000602 ; owl:annotatedTarget "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] " ; obo:IAO_0010000 ] . ### http://purl.obolibrary.org/obo/BFO_0000140 obo:BFO_0000140 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000141 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000124 ; owl:allValuesFrom obo:BFO_0000140 ] , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000178 ; owl:allValuesFrom obo:BFO_0000140 ] ; dc:identifier "029-BFO" ; rdfs:label "continuant fiat boundary"@en ; skos:definition "(Elucidation) A continuant fiat boundary b is an immaterial entity that is of zero, one or two dimensions & such that there is no time t when b has a spatial region as continuant part & whose location is determined in relation to some material entity"@en ; skos:example "As for fiat point, fiat line, fiat surface"@en ; skos:prefLabel "continuant fiat boundary"@en . ### http://purl.obolibrary.org/obo/BFO_0000141 obo:BFO_0000141 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000004 ; dc:identifier "028-BFO" ; rdfs:label "immaterial entity"@en ; skos:definition "b is an immaterial entity =Def b is an independent continuant which is such that there is no time t when it has a material entity as continuant part"@en ; skos:example "As for fiat point, fiat line, fiat surface, site"@en ; skos:prefLabel "immaterial entity"@en . ### http://purl.obolibrary.org/obo/BFO_0000142 obo:BFO_0000142 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000140 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000178 ; owl:allValuesFrom [ rdf:type owl:Class ; owl:unionOf ( obo:BFO_0000142 obo:BFO_0000147 ) ] ] ; dc:identifier "032-BFO" ; rdfs:label "fiat line"@en ; skos:definition "(Elucidation) A fiat line is a one-dimensional continuant fiat boundary that is continuous"@en ; skos:example "The Equator; all geopolitical boundaries; all lines of latitude and longitude; the median sulcus of your tongue; the line separating the outer surface of the mucosa of the lower lip from the outer surface of the skin of the chin"@en ; skos:prefLabel "fiat line"@en . ### http://purl.obolibrary.org/obo/BFO_0000145 obo:BFO_0000145 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000019 ; dc:identifier "057-BFO" ; rdfs:label "relational quality"@en ; skos:definition "b is a relational quality =Def b is a quality & there exists c and d such that c and d are not identical & b specifically depends on c & b specifically depends on d"@en ; skos:example "A marriage bond; an instance of love; an obligation between one person and another"@en ; skos:prefLabel "relational quality"@en . ### http://purl.obolibrary.org/obo/BFO_0000146 obo:BFO_0000146 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000140 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000178 ; owl:allValuesFrom obo:BFO_0000140 ] ; dc:identifier "033-BFO" ; rdfs:label "fiat surface"@en ; skos:definition "(Elucidation) A fiat surface is a two-dimensional continuant fiat boundary that is self-connected"@en ; skos:example "The surface of the Earth; the plane separating the smoking from the non-smoking zone in a restaurant"@en ; skos:prefLabel "fiat surface"@en . ### http://purl.obolibrary.org/obo/BFO_0000147 obo:BFO_0000147 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000140 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000178 ; owl:allValuesFrom obo:BFO_0000147 ] ; dc:identifier "031-BFO" ; rdfs:label "fiat point"@en ; skos:definition "(Elucidation) A fiat point is a zero-dimensional continuant fiat boundary that consists of a single point"@en ; skos:example "The geographic North Pole; the quadripoint where the boundaries of Colorado, Utah, New Mexico and Arizona meet; the point of origin of some spatial coordinate system"@en ; skos:prefLabel "fiat point"@en . ### http://purl.obolibrary.org/obo/BFO_0000148 obo:BFO_0000148 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000008 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000121 ; owl:allValuesFrom obo:BFO_0000148 ] ; dc:identifier "102-BFO" ; rdfs:label "zero-dimensional temporal region"@en ; skos:definition "(Elucidation) A zero-dimensional temporal region is a temporal region that is a whole consisting of one or more separated temporal instants as parts"@en ; skos:example "A temporal region that is occupied by a process boundary; the moment at which a finger is detached in an industrial accident"@en ; skos:prefLabel "zero-dimensional temporal region"@en . ### http://purl.obolibrary.org/obo/BFO_0000182 obo:BFO_0000182 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000015 ; dc:identifier "138-BFO" ; rdfs:label "history"@en ; skos:definition "(Elucidation) A history is a process that is the sum of the totality of processes taking place in the spatiotemporal region occupied by the material part of a material entity"@en ; skos:example "The life of an organism from the beginning to the end of its existence"@en ; skos:prefLabel "history"@en . ### http://purl.obolibrary.org/obo/BFO_0000202 obo:BFO_0000202 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000038 ; dc:identifier "155-BFO" ; rdfs:label "temporal interval"@en ; skos:definition "(Elucidation) A temporal interval is a one-dimensional temporal region that is continuous, thus without gaps or breaks"@en ; skos:example "The year 2018."@en ; skos:prefLabel "temporal interval"@en ; skos:scopeNote "A one-dimensional temporal region can include as parts not only temporal intervals but also temporal instants separated from other parts by gaps."@en . ### http://purl.obolibrary.org/obo/BFO_0000203 obo:BFO_0000203 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000148 ; dc:identifier "209-BFO" ; rdfs:label "temporal instant"@en ; skos:definition "(Elucidation) A temporal instant is a zero-dimensional temporal region that has no proper temporal part"@en ; skos:example "The millennium"@en ; skos:prefLabel "temporal instant"@en . ### http://purl.obolibrary.org/obo/ECOCORE_00000139 obo:ECOCORE_00000139 rdf:type owl:Class ; rdfs:subClassOf obo:AGRO_00002071 ; obo:IAO_0000115 "A heterotrophic process during which a living entity acquires food and energy by eating food off of a surface while slowly moving through the environment." ; obo:IAO_0000117 "http://orcid.org/0000-0002-2908-3327" ; obo:IAO_0000412 obo:ecocore.owl ; rdfs:comment """SuMSO developer comment: We envision implementations in the axiomatization that specify this class for grazing animals."""@en ; rdfs:label "grazing" . ### http://purl.obolibrary.org/obo/ENVO_00000114 obo:ENVO_00000114 rdf:type owl:Class ; rdfs:subClassOf obo:ENVO_01000352 , [ owl:intersectionOf ( obo:ENVO_01000352 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; obo:IAO_0000115 "A field which is located on land and used for agricultural purposes, such as the grazing of livestock or the cultivation of crops." ; obo:IAO_0000412 obo:envo.owl ; oboInOwl:hasBroadSynonym "agricultural site" ; oboInOwl:hasDbXref "EcoLexicon:field" , "FTT:45" , "FTT:61" , "Geonames:L.FLD" , "SWEETRealm:Field" , "TGN:21456" ; oboInOwl:hasRelatedSynonym "cropland" , "grassland" ; rdfs:comment """SuMSO developer comment: possible axioms may be created to refer to the presence of plants, fungi, animals, and so on in agricultural fields, on necessity."""@en ; rdfs:label "agricultural field" . ### http://purl.obolibrary.org/obo/ENVO_00002170 obo:ENVO_00002170 rdf:type owl:Class ; rdfs:subClassOf obo:ENVO_03501300 ; obo:IAO_0000115 "Manure which has been derived from the aerobically decomposed remnants of organic materials."@en ; obo:IAO_0000412 obo:envo.owl ; oboInOwl:hasDbXref "https://en.wikipedia.org/wiki/Compost" ; rdfs:label "compost" . ### http://purl.obolibrary.org/obo/ENVO_00002171 obo:ENVO_00002171 rdf:type owl:Class ; rdfs:subClassOf obo:ENVO_00002170 ; obo:IAO_0000412 obo:envo.owl ; oboInOwl:hasOBONamespace "ENVO" ; oboInOwl:id "ENVO:00002171" ; rdfs:label "hay compost" . ### http://purl.obolibrary.org/obo/ENVO_00003031 obo:ENVO_00003031 rdf:type owl:Class ; rdfs:subClassOf obo:ENVO_03501300 ; obo:IAO_0000115 "Manure which is derived from the waste products of animals."@en ; obo:IAO_0000412 obo:envo.owl ; rdfs:comment "This is interesting in that the \"role\" aspect of \"waste\" is (or can be) replaced by another role \"fertilizer\". Thus, the positioning of \"manure\" under waste may not be totally correct." ; rdfs:label "animal manure" . ### http://purl.obolibrary.org/obo/ENVO_00003032 obo:ENVO_00003032 rdf:type owl:Class ; rdfs:subClassOf obo:ENVO_00003031 ; obo:IAO_0000412 obo:envo.owl ; oboInOwl:hasOBONamespace "ENVO" ; oboInOwl:id "ENVO:00003032" ; rdfs:label "fresh animal manure" . ### http://purl.obolibrary.org/obo/ENVO_00003033 obo:ENVO_00003033 rdf:type owl:Class ; rdfs:subClassOf obo:ENVO_00002170 ; obo:IAO_0000115 "A compost which generally consists of a combination of wheat straw, dried blood, horse manure and ground chalk, composted together and is the residual compost waste generated by industrial mushroom production." ; obo:IAO_0000412 obo:envo.owl ; oboInOwl:hasDbXref "https://en.wikipedia.org/wiki/Mushroom_compost" ; oboInOwl:hasOBONamespace "ENVO" ; oboInOwl:id "ENVO:00003033" ; rdfs:label "mushroom compost" . ### http://purl.obolibrary.org/obo/ENVO_00003884 obo:ENVO_00003884 rdf:type owl:Class ; rdfs:subClassOf obo:ENVO_00003031 ; obo:IAO_0000412 obo:envo.owl ; oboInOwl:hasOBONamespace "ENVO" ; oboInOwl:id "ENVO:00003884" ; rdfs:label "farmyard manure" . ### http://purl.obolibrary.org/obo/ENVO_00003927 obo:ENVO_00003927 rdf:type owl:Class ; rdfs:subClassOf obo:ENVO_00003031 ; obo:IAO_0000412 obo:envo.owl ; oboInOwl:hasOBONamespace "ENVO" ; oboInOwl:id "ENVO:00003927" ; rdfs:label "stable manure" . ### http://purl.obolibrary.org/obo/ENVO_01000352 obo:ENVO_01000352 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000040 ; obo:IAO_0000115 "An unbroken expanse (as of ice)" ; obo:IAO_0000412 obo:envo.owl ; oboInOwl:created_by "ORCID:0000-0002-4366-3088" ; oboInOwl:inSubset "envoPolar" ; rdfs:comment "This class was created to accommodate \"fields\" from agricultural fields to marine mesoscale eddy fields. Thus, it has a very broad definition which makes it less than informative when annotating. Please consider using or requesting an appropriate subclass." ; rdfs:label "field" . ### http://purl.obolibrary.org/obo/ENVO_01001116 obo:ENVO_01001116 rdf:type owl:Class ; rdfs:subClassOf ; obo:IAO_0000115 "Manure which has been collected directly or indirectly from dairy cattle, as from flushing of manure from concrete feed lanes, free stalls, and milking facilities." ; obo:IAO_0000412 obo:envo.owl ; rdfs:label "bovine dairy liquid manure"@en . ### http://purl.obolibrary.org/obo/ENVO_01001118 obo:ENVO_01001118 rdf:type owl:Class ; rdfs:subClassOf obo:ENVO_00003031 ; obo:IAO_0000115 "Manure which has been subjected to heat treatment for solidification and/or sterilization purposes." ; obo:IAO_0000412 obo:envo.owl ; rdfs:label "heat-treated animal manure"@en . ### http://purl.obolibrary.org/obo/ENVO_01001119 obo:ENVO_01001119 rdf:type owl:Class ; rdfs:subClassOf obo:ENVO_00003031 ; obo:IAO_0000115 "Manure which has been subjected to a natural process of 'rotting' or decomposition of its organic matter content by microorganisms under controlled conditions." ; obo:IAO_0000412 obo:envo.owl ; rdfs:label "composted animal manure"@en . ### http://purl.obolibrary.org/obo/ENVO_03501300 obo:ENVO_03501300 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000040 , [ owl:intersectionOf ( obo:BFO_0000040 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; obo:IAO_0000115 "An environmental material consisting of organic matter from plants and/or animals that is used in agriculture as fertilizer."@en ; obo:IAO_0000412 obo:envo.owl ; oboInOwl:created_by ; oboInOwl:creation_date "2021-03-15T04:00:01.750Z"^^xsd:dateTime ; oboInOwl:hasNarrowSynonym "animal manure"@en , "compost"@en , "farm slurry"@en , "green manure"@en , "liquid manure"@en ; rdfs:comment "Most manure consists of animal feces; other sources include compost and green manure."@en , """SuMSO developer comment: We suggest to create a corresponding role, speciic for manure."""@en ; rdfs:label "manure"@en . ### http://purl.obolibrary.org/obo/FOODON_00000015 obo:FOODON_00000015 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:NCBITaxon_9913 obo:UBERON_0007023 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000086 ; owl:someValuesFrom obo:PATO_0002366 ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:NCBITaxon_9913 , obo:UBERON_0007023 , [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000086 ; owl:someValuesFrom obo:PATO_0002366 ] ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A cattle bull is an adult \"intact\" (i.e. not castrated) male of a cattle species."@en ; obo:IAO_0000117 "Damion Dooley" ; obo:IAO_0000119 "https://en.wikipedia.org/wiki/Cattle#Terminology"@en ; obo:IAO_0000412 obo:foodon.owl ; terms:date "2019-02-21T03:01:03Z"^^xsd:dateTime ; oboInOwl:hasBroadSynonym "http://purl.oboInOwllibrary.org/oboInOwl/AGRO_00000119"@en ; oboInOwl:hasSynonym "bull"@en ; rdfs:label "cattle bull"@en . ### http://purl.obolibrary.org/obo/FOODON_00000071 obo:FOODON_00000071 rdf:type owl:Class ; rdfs:subClassOf obo:OBI_0000094 ; obo:IAO_0000115 "A process of cutting food into smaller pieces, chunks or slices."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0002-8844-9165" ; terms:date "2024-01-15T09:29:58Z"^^xsd:dateTime ; rdfs:comment "The term includes 'process' in order to distinguish from 'food cutting' as a noun."@en ; rdfs:label "food cutting process"@en . ### http://purl.obolibrary.org/obo/FOODON_00001565 obo:FOODON_00001565 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020895 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A pre-evisceration carcass is the carcass of a dead animal immediately following hide removal, before any antimicrobial applications and any part of the evisceration process has been performed. This is a material entity state within a butchery process."@en ; obo:IAO_0000117 "Gregory Harhay"@en ; obo:IAO_0000412 obo:foodon.owl ; rdfs:label "pre-evisceration carcass"@en ; rdfs:seeAlso "https://www.ars.usda.gov/ARSUserFiles/30400510/protocols/USMARC%20Carcass%20Sampling%20Protocol.pdf"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/FOODON_00001566 obo:FOODON_00001566 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020898 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A post-intervention carcass is a carcass that has had all antimicrobial intervention applied, been split in half along the backbone, and placed in a cooler, often referred to as the \"hot box\" cooler."@en ; obo:IAO_0000117 "Gregory Harhay"@en ; obo:IAO_0000412 obo:foodon.owl ; rdfs:label "post-evisceration carcass"@en . ### http://purl.obolibrary.org/obo/FOODON_00002505 obo:FOODON_00002505 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_00002507 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "Dairy cattle are a type of cattle bred for the ability to produce large quantities of milk, from which dairy products are made. This class covers both male and female members of a dairy breed."@en ; obo:IAO_0000117 "Damion Dooley" ; obo:IAO_0000119 "https://en.wikipedia.org/wiki/Dairy_cattle"^^xsd:anyURI ; obo:IAO_0000412 obo:foodon.owl ; terms:date "2019-01-26T22:49:27Z"^^xsd:dateTime ; rdfs:label "dairy cattle"@en ; rdfs:seeAlso "https://en.wikipedia.org/wiki/List_of_dairy_cattle_breeds"^^xsd:anyURI . ### http://purl.obolibrary.org/obo/FOODON_00002507 obo:FOODON_00002507 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_9913 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "Taurine cattle (Bos taurus taurus), also called European cattle, are a subspecies of domesticated cattle originating in the Near East. Both taurine cattle and indicine cattle (zebus) are descended from the aurochs. Taurine cattle were originally considered a distinct species, but are now typically grouped with zebus and aurochs into one species, Bos taurus. Most modern breeds of cattle are taurine cattle."@en ; obo:IAO_0000117 "Damion Dooley" ; obo:IAO_0000119 ; obo:IAO_0000412 obo:foodon.owl ; terms:date "2019-01-28T02:41:04Z"^^xsd:dateTime ; oboInOwl:hasDbXref ; rdfs:label "taurine cattle"@en . ### http://purl.obolibrary.org/obo/FOODON_00002518 obo:FOODON_00002518 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_9913 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A heifer is a young female, under three years of age, of a cattle species before she has had a calf of her own."@en ; obo:IAO_0000117 "Damion Dooley" ; obo:IAO_0000119 "https://en.wikipedia.org/wiki/Cattle#Terminology"@en ; obo:IAO_0000412 obo:foodon.owl ; terms:date "2019-02-21T03:04:04Z"^^xsd:dateTime ; rdfs:label "heifer"@en . ### http://purl.obolibrary.org/obo/FOODON_00002531 obo:FOODON_00002531 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:NCBITaxon_9913 obo:UBERON_0007023 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000086 ; owl:someValuesFrom obo:PATO_0002367 ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:NCBITaxon_9913 , obo:UBERON_0007023 , [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000086 ; owl:someValuesFrom obo:PATO_0002367 ] ; obo:IAO_0000115 "A cattle steer is an adult castrated male of a cattle species."@en ; obo:IAO_0000117 "Damion Dooley" ; obo:IAO_0000119 "https://en.wikipedia.org/wiki/Cattle#Terminology"@en ; obo:IAO_0000412 obo:foodon.owl ; terms:date "2019-02-22T23:48:25Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "steer"@en ; oboInOwl:hasSynonym "bull"@en ; rdfs:comment "A steer is a younger animal that may not be trained, or may not be strong and mature enough for hard work. In the United States a steer is not considered an ox until it is four years old, by which time it is considered large enough and mature enough for any work required of it." ; rdfs:label "cattle steer"@en . ### http://purl.obolibrary.org/obo/FOODON_00002555 obo:FOODON_00002555 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_00004413 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "Wagyu is any of the four Japanese breeds of beef cattle: Japanese Black (Kuroge Washu), Japanese Polled (Mukaku Washu), Japanese Brown (Akage Washu or Akaushi) and Japanese Shorthorn (Nihon Tankaku Washu). In several areas of Japan, wagyu beef is shipped carrying area names. Some examples are Matsusaka beef, Kobe beef, Yonezawa beef, Mishima beef, Ōmi beef, and Sanda beef."@en ; obo:IAO_0000117 "Damion Dooley" ; obo:IAO_0000119 "https://en.wikipedia.org/wiki/Wagyu"^^xsd:anyURI ; obo:IAO_0000412 obo:foodon.owl ; terms:date "2019-03-20T08:06:23Z"^^xsd:dateTime ; oboInOwl:hasNarrowSynonym "Akage Washu"@ja , "Akaushi"@jp , "Japanese Black"@en , "Japanese Brown"@en , "Japanese Polled"@en , "Japanese Shorthorn"@en , "Kuroge Washu"@ja , "Mukaku Washu"@ja , "Nihon Tankaku Washu"@ja , "日本短角和種"@ja , "無角和種"@ja , "赤毛和種"@ja , "黒毛和種"@ja ; rdfs:label "wagyu cattle"@en . ### http://purl.obolibrary.org/obo/FOODON_00002574 obo:FOODON_00002574 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02000403 ; obo:IAO_0000115 "A butchery cut of beef that is primal, sub-primal or a retail cut."@en ; obo:IAO_0000119 obo:IAO_0000122 , "https://en.wikipedia.org/wiki/Cut_of_beef#British_cuts"^^xsd:anyURI ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor " https://orcid.org/0000-0001-5275-8866" ; terms:date "2019-04-14T20:55:42Z"^^xsd:dateTime ; rdfs:label "butchery cut of beef"@en ; rdfs:seeAlso . ### http://purl.obolibrary.org/obo/FOODON_00002943 obo:FOODON_00002943 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_00002505 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "The Jersey is a British breed of small dairy cattle from Jersey, in the Channel Islands."@en ; obo:IAO_0000117 , "Emma Griffiths"@en ; obo:IAO_0000119 ; obo:IAO_0000412 obo:foodon.owl ; terms:date "2019-08-10T16:52:20Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "Jersey cow"@en ; rdfs:label "Jersey cattle"@en . ### http://purl.obolibrary.org/obo/FOODON_00003251 obo:FOODON_00003251 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_9913 ; obo:IAO_0000115 "A castrated adult cattle male (occasionally a female or in some areas a bull) kept for draft or riding purposes."@en ; obo:IAO_0000117 ; obo:IAO_0000119 "https://en.wikipedia.org/wiki/Cattle#Terminology"@en ; obo:IAO_0000412 obo:foodon.owl ; terms:date "2019-11-04T18:48:09Z"^^xsd:dateTime ; rdfs:comment "Ox as a prefix may also be used to refer to some carcass products from any adult cattle, such as ox-hide, ox-blood, oxtail, or ox-liver. [https://en.wikipedia.org/wiki/Cattle#Terminology]"@en ; rdfs:label "ox"@en ; rdfs:seeAlso . ### http://purl.obolibrary.org/obo/FOODON_00004292 obo:FOODON_00004292 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_9913 ; obo:IAO_0000115 "A cow that is usually sold to feed yards for further weight gain."@en ; obo:IAO_0000119 "https://en.wikipedia.org/wiki/Cattle"@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor , ; terms:date "2022-08-24T12:12:34Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "store cow"@en ; rdfs:label "feeder cow"@en . ### http://purl.obolibrary.org/obo/FOODON_00004293 obo:FOODON_00004293 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_9913 ; obo:IAO_0000115 "A cow that undergoes a final fattening process prior to sale or slaughter."@en ; obo:IAO_0000119 "https://en.wikipedia.org/wiki/Cattle"@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor ; terms:date "2022-08-24T12:49:23Z"^^xsd:dateTime ; rdfs:label "finisher cow"@en . ### http://purl.obolibrary.org/obo/FOODON_00004294 obo:FOODON_00004294 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_9913 ; obo:IAO_0000115 "A cow that has been weaned and is being fed in a way to add physical bulk to its body."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor ; terms:date "2022-08-24T12:53:15Z"^^xsd:dateTime ; rdfs:label "stocker cow"@en . ### http://purl.obolibrary.org/obo/FOODON_00004295 obo:FOODON_00004295 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_9913 ; obo:IAO_0000115 "A young cow that has been weaned and consumes solid food."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor ; terms:date "2022-08-24T13:39:16Z"^^xsd:dateTime ; rdfs:label "weanling cow"@en . ### http://purl.obolibrary.org/obo/FOODON_00004296 obo:FOODON_00004296 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_9913 ; obo:IAO_0000115 "A cow that is genetically female, but has many characteristics of a male and is usually infertile."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor ; terms:date "2022-08-24T13:51:12Z"^^xsd:dateTime ; rdfs:label "freemartin cow"@en . ### http://purl.obolibrary.org/obo/FOODON_00004328 obo:FOODON_00004328 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_03420116 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A piece or pieces or amount of substance derived from one or more organisms."@en ; obo:IAO_0000117 ; obo:IAO_0000412 obo:foodon.owl ; terms:date "2023-03-02T22:30:19Z"^^xsd:dateTime ; rdfs:label "organism piece"@en . ### http://purl.obolibrary.org/obo/FOODON_00004410 obo:FOODON_00004410 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020910 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A whole animal heart that is obtained from a beef."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0002-8844-9165" ; terms:date "2023-06-20T05:55:31Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "cow heart"@en ; rdfs:label "beef heart"@en . ### http://purl.obolibrary.org/obo/FOODON_00004411 obo:FOODON_00004411 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_03411201 ; obo:IAO_0000115 "A dairy cow that is in a stage of its lactation cycle where milk production ceases prior to calving."@en ; obo:IAO_0000119 "https://orcid.org/0000-0001-5275-8866"@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor ; terms:date "2023-06-21T09:50:32Z"^^xsd:dateTime ; rdfs:label "dry cow" . ### http://purl.obolibrary.org/obo/FOODON_00004413 obo:FOODON_00004413 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_00002507 ; obo:IAO_0000115 "Cattle raised for meat production."@en ; obo:IAO_0000119 "https://en.wikipedia.org/wiki/Beef_cattle"@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor ; terms:date "2023-06-21T09:54:23Z"^^xsd:dateTime ; rdfs:label "beef cattle" . ### http://purl.obolibrary.org/obo/FOODON_00004470 obo:FOODON_00004470 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_00002574 ; obo:IAO_0000115 "A cut of beef that is initially separated from the carcass of a{n} {organism} during butchering."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor , "https://orcid.org/0000-0001-5275-8866" ; terms:date "2023-08-01T19:21:33Z"^^xsd:dateTime ; rdfs:label "beef primal cut"@en . ### http://purl.obolibrary.org/obo/FOODON_00004476 obo:FOODON_00004476 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_00002574 ; obo:IAO_0000115 "A smaller cut of beef that is obtained from the larger primal cut of beef."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor , "https://orcid.org/0000-0001-5275-8866" ; terms:date "2023-08-02T15:48:39Z"^^xsd:dateTime ; rdfs:label "beef sub-primal cut"@en . ### http://purl.obolibrary.org/obo/FOODON_00004478 obo:FOODON_00004478 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_00002574 ; obo:IAO_0000115 "A cut of beef that is derived from a sub-primal, individual muscle cut or minor primal cut."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" ; terms:date "2023-08-02T16:14:49Z"^^xsd:dateTime ; rdfs:label "beef retail cut"@en . ### http://purl.obolibrary.org/obo/FOODON_00004530 obo:FOODON_00004530 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:FOODON_00004328 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002162 ; owl:someValuesFrom obo:NCBITaxon_9913 ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:FOODON_02020889 , [ owl:intersectionOf ( obo:FOODON_00004328 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0001000 ; owl:someValuesFrom obo:NCBITaxon_9913 ] ) ; rdf:type owl:Class ] ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A severed part of a beef."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor , "https://orcid.org/0000-0002-8844-9165" ; terms:date "2023-12-15T19:38:18Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "piece of cow"@en ; rdfs:comment """SuMSO developer comment: Future implementations will extend the characterization of cow meat items and more general meat items. For instance, implementations will deepen the account of pieces of animals as such and as food products (by-products)."""@en , """SuMSO developer comment: Upper-level classes, such as animal skin, animal organ, are required."""@en ; rdfs:label "piece of cow"@en ; rdfs:seeAlso """SuMSO: See also: http://purl.obolibrary.org/obo/FOODON_02021348 and subclasses. http://purl.obolibrary.org/obo/FOODON_00004532 and subclasses. http://purl.obolibrary.org/obo/FOODON_00004335 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00004332 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00001134 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00001041 and subclasses. http://purl.obolibrary.org/obo/UBERON_0000463 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_03420127 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00002403 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00001002 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00002381 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00004242 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00001092 and relevant subclasses."""@en . ### http://purl.obolibrary.org/obo/FOODON_00004556 obo:FOODON_00004556 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02000403 ; obo:IAO_0000115 "A whole foot that derives from a cow."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor ; terms:date "2024-02-02T00:31:51Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "cow trotter"@en ; rdfs:label "cow foot"@en . ### http://purl.obolibrary.org/obo/FOODON_02000403 obo:FOODON_02000403 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_00004530 ; obo:IAO_0000115 "A piece of animal meat that is derived from cow."@en ; obo:IAO_0000412 obo:foodon.owl ; rdfs:label "piece of beef"@en . ### http://purl.obolibrary.org/obo/FOODON_02000405 obo:FOODON_02000405 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02000403 ; obo:IAO_0000115 "A piece of boneless beef."@en ; obo:IAO_0000412 obo:foodon.owl ; rdfs:label "piece of beef (boneless)"@en . ### http://purl.obolibrary.org/obo/FOODON_02000408 obo:FOODON_02000408 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02000403 ; obo:IAO_0000115 "A piece of beef that contains bone material."@en ; obo:IAO_0000412 obo:foodon.owl ; rdfs:label "piece of beef (with bone)"@en . ### http://purl.obolibrary.org/obo/FOODON_02010001 obo:FOODON_02010001 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_03420164 , [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002162 ; owl:someValuesFrom obo:NCBITaxon_33208 ] ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "Material which is produced by an animal."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" ; terms:date "2023-08-01T21:25:29Z"^^xsd:dateTime ; rdfs:comment "This includes things like eggs and milk."@en ; rdfs:label "animal substance"@en . ### http://purl.obolibrary.org/obo/FOODON_02010014 obo:FOODON_02010014 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02010001 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "Blood from an animal."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" ; terms:date "2023-08-01T21:25:29Z"^^xsd:dateTime ; rdfs:label "animal blood"@en . ### http://purl.obolibrary.org/obo/FOODON_02010020 obo:FOODON_02010020 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:UBERON_0008979 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002162 ; owl:someValuesFrom obo:NCBITaxon_33208 ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:FOODON_03420164 , obo:UBERON_0008979 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A carcass of an animal that includes all anatomical parts."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" ; terms:date "2023-08-01T21:25:29Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "dead animal"@en ; rdfs:comment "This includes a carcass with all organs and skin."@en , "This is an Uberon 'carcass' that 'has quality' some 'dead"@en ; rdfs:label "animal carcass"@en . ### http://purl.obolibrary.org/obo/FOODON_02020889 obo:FOODON_02020889 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:FOODON_03420164 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002162 ; owl:someValuesFrom obo:NCBITaxon_9913 ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:FOODON_03420164 , [ owl:intersectionOf ( obo:FOODON_03420116 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:FOODON_03420164 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0001000 ; owl:someValuesFrom obo:NCBITaxon_9913 ] ) ; rdf:type owl:Class ] , [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002162 ; owl:someValuesFrom obo:NCBITaxon_9913 ] ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "Material that derives from some cow."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" , "https://orcid.org/0000-0002-3410-4655" , "https://orcid.org/0000-0002-8844-9165" ; terms:date "2024-02-12T14:11:19Z"^^xsd:dateTime ; rdfs:comment """SuMSO developer comment: Future implementations will extend the characterization of cow meat items and more general meat items. For instance, implementations will deepen the account of pieces of animals as such and as food products (by-products)."""@en , "This branch isn't necessarily food material"@en ; rdfs:label "cow material"@en ; rdfs:seeAlso """SuMSO: See also: http://purl.obolibrary.org/obo/FOODON_00004335 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00004332 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00001134 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00001041 and subclasses. http://purl.obolibrary.org/obo/UBERON_0000463 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_03420127 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00002403 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00001002 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00002381 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00004242 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00001092 and relevant subclasses."""@en , """SuMSO: See also: http://purl.obolibrary.org/obo/FOODON_00001678 and subclasses."""@en . ### http://purl.obolibrary.org/obo/FOODON_02020890 obo:FOODON_02020890 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02010001 , obo:FOODON_02020889 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "Material which is produced by a cow."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" , "https://orcid.org/0000-0002-3410-4655" , "https://orcid.org/0000-0002-8844-9165" ; terms:date "2024-02-12T14:11:19Z"^^xsd:dateTime ; rdfs:label "cow substance"@en . ### http://purl.obolibrary.org/obo/FOODON_02020895 obo:FOODON_02020895 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_00004530 , obo:FOODON_03305517 , [ owl:intersectionOf ( obo:FOODON_03305517 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:OBI_0000312 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002353 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A beef carcass that has been processed to some degree."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" , "https://orcid.org/0000-0002-3410-4655" , "https://orcid.org/0000-0002-8844-9165" ; terms:date "2024-02-12T14:11:19Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "cow processed carcass"@en ; rdfs:label "beef processed carcass"@en ; rdfs:seeAlso """SuMSo: See also: http://purl.obolibrary.org/obo/FOODON_00003083 and subclasses. http://purl.obolibrary.org/obo/FOODON_03420175 and subclasses."""@en . ### http://purl.obolibrary.org/obo/FOODON_02020898 obo:FOODON_02020898 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020895 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A beef carcass which is eviscerated and cleaned."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" , "https://orcid.org/0000-0002-3410-4655" , "https://orcid.org/0000-0002-8844-9165" ; terms:date "2024-02-12T14:11:19Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "cow carcass (butchered)"@en ; rdfs:label "beef carcass (butchered)"@en . ### http://purl.obolibrary.org/obo/FOODON_02020899 obo:FOODON_02020899 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020895 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A beef carcass which is gutted."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" , "https://orcid.org/0000-0002-3410-4655" , "https://orcid.org/0000-0002-8844-9165" ; terms:date "2024-02-12T14:11:19Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "cow carcass (gutted)"@en ; rdfs:label "beef carcass (gutted)"@en . ### http://purl.obolibrary.org/obo/FOODON_02020905 obo:FOODON_02020905 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_03302092 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "Beef fat that is found around the outside of muscle of a meat cut."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" , "https://orcid.org/0000-0002-3410-4655" , "https://orcid.org/0000-0002-8844-9165" ; terms:date "2024-02-12T14:11:19Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "cow external fat"@en ; rdfs:label "beef external fat"@en . ### http://purl.obolibrary.org/obo/FOODON_02020906 obo:FOODON_02020906 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_03302092 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "Beef fat that is found between the muscle of a meat cut."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" , "https://orcid.org/0000-0002-3410-4655" , "https://orcid.org/0000-0002-8844-9165" ; terms:date "2024-02-12T14:11:19Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "cow seam fat"@en ; rdfs:label "beef seam fat"@en . ### http://purl.obolibrary.org/obo/FOODON_02020910 obo:FOODON_02020910 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_00004530 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "An organ that derives from a beef."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" , "https://orcid.org/0000-0002-3410-4655" , "https://orcid.org/0000-0002-8844-9165" ; terms:date "2024-02-12T14:11:19Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "cow organ"@en ; rdfs:label "beef organ"@en . ### http://purl.obolibrary.org/obo/FOODON_02020911 obo:FOODON_02020911 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020910 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A whole animal brain that is obtained from a beef."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" , "https://orcid.org/0000-0002-3410-4655" , "https://orcid.org/0000-0002-8844-9165" ; terms:date "2024-02-12T14:11:19Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "cow brain"@en ; rdfs:label "beef brain"@en . ### http://purl.obolibrary.org/obo/FOODON_02020912 obo:FOODON_02020912 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020910 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A whole animal kidney that is obtained from a beef."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" , "https://orcid.org/0000-0002-3410-4655" , "https://orcid.org/0000-0002-8844-9165" ; terms:date "2024-02-12T14:11:19Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "cow kidney"@en ; rdfs:label "beef kidney"@en . ### http://purl.obolibrary.org/obo/FOODON_02020913 obo:FOODON_02020913 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020910 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A whole animal liver that is obtained from a beef."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" , "https://orcid.org/0000-0002-3410-4655" , "https://orcid.org/0000-0002-8844-9165" ; terms:date "2024-02-12T14:11:19Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "cow liver"@en ; rdfs:label "beef liver"@en . ### http://purl.obolibrary.org/obo/FOODON_02020914 obo:FOODON_02020914 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020910 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A whole animal spleen that is obtained from a beef."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" , "https://orcid.org/0000-0002-3410-4655" , "https://orcid.org/0000-0002-8844-9165" ; terms:date "2024-02-12T14:11:19Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "cow spleen"@en ; rdfs:label "beef spleen"@en . ### http://purl.obolibrary.org/obo/FOODON_02020915 obo:FOODON_02020915 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020910 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A whole animal lung that is obtained from a beef."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" , "https://orcid.org/0000-0002-3410-4655" , "https://orcid.org/0000-0002-8844-9165" ; terms:date "2024-02-12T14:11:19Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "cow lung"@en ; rdfs:label "beef lung"@en . ### http://purl.obolibrary.org/obo/FOODON_02020916 obo:FOODON_02020916 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020910 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A whole animal tongue that is obtained from a beef."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" , "https://orcid.org/0000-0002-3410-4655" , "https://orcid.org/0000-0002-8844-9165" ; terms:date "2024-02-12T14:11:19Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "cow tongue"@en ; rdfs:label "beef tongue"@en . ### http://purl.obolibrary.org/obo/FOODON_02020917 obo:FOODON_02020917 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020910 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A whole animal thymus that is obtained from a beef."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" , "https://orcid.org/0000-0002-3410-4655" , "https://orcid.org/0000-0002-8844-9165" ; terms:date "2024-02-12T14:11:19Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "cow thymus"@en ; rdfs:label "beef thymus"@en . ### http://purl.obolibrary.org/obo/FOODON_02020918 obo:FOODON_02020918 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020910 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A whole animal pancreas that is obtained from a beef."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" , "https://orcid.org/0000-0002-3410-4655" , "https://orcid.org/0000-0002-8844-9165" ; terms:date "2024-02-12T14:11:19Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "cow pancreas"@en ; rdfs:label "beef pancreas"@en . ### http://purl.obolibrary.org/obo/FOODON_02020919 obo:FOODON_02020919 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020910 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A whole animal testicle that is obtained from a beef."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" , "https://orcid.org/0000-0002-3410-4655" , "https://orcid.org/0000-0002-8844-9165" ; terms:date "2024-02-12T14:11:19Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "beef testis"@en , "cow testicle"@en ; rdfs:label "beef testicle"@en . ### http://purl.obolibrary.org/obo/FOODON_02020920 obo:FOODON_02020920 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020910 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A whole animal stomach that is obtained from a beef."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" , "https://orcid.org/0000-0002-3410-4655" , "https://orcid.org/0000-0002-8844-9165" ; terms:date "2024-02-12T14:11:19Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym "cow stomach"@en ; rdfs:label "beef stomach"@en . ### http://purl.obolibrary.org/obo/FOODON_03301750 obo:FOODON_03301750 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000040 , [ owl:intersectionOf ( obo:BFO_0000040 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "Forage is a plant material (mainly plant leaves and stems) eaten by grazing livestock. Historically, the term forage has meant only plants eaten by the animals directly as pasture, crop residue, or immature cereal crops, but it is also used more loosely to include similar plants cut for fodder and carried to the animals, especially as hay or silage."@en ; obo:IAO_0000117 "Damion Dooley" ; obo:IAO_0000119 "https://en.wikipedia.org/wiki/Forage"^^xsd:anyURI ; obo:IAO_0000412 obo:foodon.owl ; oboInOwl:hasDbXref ; rdfs:comment """SIREN DB annotation: * whole, natural shape FOODON:03430150 * not heat-treated FOODON:03440003 * whole plant or most parts used FOODON:03420150 * non-food animal as food consumer FOODON:03510013 * food animal as consumer FOODON:03510015"""@en , """SuMSO developer comment: We suggest creating a corresponding “forage” role. Discussion with subject matter experts are required."""@en ; rdfs:label "forage (animal feed)"@en ; rdfs:seeAlso """SuMSO: http://purl.obolibrary.org/obo/ENVO_01001113"""@en . ### http://purl.obolibrary.org/obo/FOODON_03302092 obo:FOODON_03302092 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_00004530 , [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0001000 ; owl:someValuesFrom obo:NCBITaxon_9913 ] ; obo:IAO_0000114 obo:IAO_0000122 , obo:IAO_0000428 ; obo:IAO_0000115 "Fat derived from a beef."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" ; terms:date "2024-06-27T22:43:12Z"^^xsd:dateTime ; oboInOwl:hasDbXref ; oboInOwl:hasExactSynonym "cow fat"@en ; rdfs:comment """SIREN DB annotation: * solid FOODON:03430151 * not heat-treated FOODON:03440003 * fat trimmings FOODON:03420253"""@en ; rdfs:label "beef fat"@en . ### http://purl.obolibrary.org/obo/FOODON_03305517 obo:FOODON_03305517 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:FOODON_02010020 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002162 ; owl:someValuesFrom obo:NCBITaxon_9913 ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:FOODON_02010020 , obo:FOODON_02020889 , , [ owl:intersectionOf ( obo:FOODON_02010020 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; obo:IAO_0000114 obo:IAO_0000122 , obo:IAO_0000428 ; obo:IAO_0000115 "A carcass of a beef that includes all anatomical parts."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" ; terms:date "2024-06-27T22:43:12Z"^^xsd:dateTime ; oboInOwl:hasDbXref ; oboInOwl:hasExactSynonym "cow carcass"@en , "dead beef"@en ; rdfs:comment """SIREN DB annotation: * whole, natural shape FOODON:03430150 * animal body or body part FOODON:03420127"""@en , """SuMSO developer comment: An upper level class that encompasses cow carcasses in general, rather than being limited solely to beef cattle, may be added."""@en , """SuMSO developer comment: FoodOn includes different classes for representing cow carcasses, organized under different hierarchies. SuMSO regroups FoodOn classes under one single hierarchy. For the original hierarchies, see http://purl.obolibrary.org/obo/FOODON_00001565 http://purl.obolibrary.org/obo/FOODON_00001566 http://purl.obolibrary.org/obo/FOODON_02020895 http://purl.obolibrary.org/obo/UBERON_0008979"""@en , "This is an Uberon 'carcass' that 'has quality' some 'dead"@en ; rdfs:label "beef carcass"@en , "cow carcass"@en ; rdfs:seeAlso """SuMSO: See also: http://purl.obolibrary.org/obo/FOODON_00003083 and subclasses."""@en . ### http://purl.obolibrary.org/obo/FOODON_03306306 obo:FOODON_03306306 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02010014 , obo:FOODON_02020890 , [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0003001 ; owl:someValuesFrom obo:NCBITaxon_9913 ] ; obo:IAO_0000114 obo:IAO_0000122 , obo:IAO_0000428 ; obo:IAO_0000115 "Blood from a cow."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" ; terms:date "2024-06-27T22:43:12Z"^^xsd:dateTime ; oboInOwl:hasDbXref ; rdfs:comment """SIREN DB annotation: * semiliquid FOODON:03430103 * blood UBERON:0000178"""@en ; rdfs:label "cow blood"@en . ### http://purl.obolibrary.org/obo/FOODON_03411201 obo:FOODON_03411201 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:FOODON_00002505 obo:UBERON_0003100 obo:UBERON_0007023 ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:FOODON_00002505 , obo:UBERON_0003100 , obo:UBERON_0007023 ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "A dairy cow is an adult female member of a dairy cattle breed"@en ; obo:IAO_0000412 obo:foodon.owl ; oboInOwl:hasDbXref ; oboInOwl:hasSynonym "cow"@en , "domesticated cattle"@en ; rdfs:label "dairy cow"@en . ### http://purl.obolibrary.org/obo/FOODON_03411349 obo:FOODON_03411349 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_00002507 ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "Calves are the young of domestic cattle. Calves are reared to become adult cattle, or are slaughtered for their meat, called veal."@en ; obo:IAO_0000119 "WIKIPEDIA:Calf" ; obo:IAO_0000412 obo:foodon.owl ; oboInOwl:hasBroadSynonym "calf"@en ; oboInOwl:hasDbXref ; oboInOwl:hasSynonym "calves"@en , "veal"@en ; rdfs:label "cattle calf"@en ; rdfs:seeAlso """SuMSO: See also: http://purl.obolibrary.org/obo/FOODON_02021290"""@en . ### http://purl.obolibrary.org/obo/FOODON_03413367 obo:FOODON_03413367 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_9913 ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "Zebus (*Bos taurus indicus*), sometimes known as 'nothing cattle', are better-adapted to tropical environments than other domestic cattle. Their scientific name was originally *Bos indicus*, but this name is now deemed invalid by ITIS, who classify the zebu under *Bos taurus* along with all other domestic cattle, and their aurochs ancestors, domesticated in India about 10,000 years ago. The ancient species of *Bos nomadicus* cattle or even gaur may have contributed to the development of the zebus. There are some 75 known breeds, split about evenly between African breeds and South Asian ones. The major Zebu cattle breeds of the world include Gyr, Guzerat, Indu-Brazilian, Nellore, Ongole and Brahman. Zebu have humps, large dewlaps and ears. They have more sweat glands than European cattle (*Bos taurus*). They handle hot, humid climates well and have pest resistances not seen in European cattle. ("@en ; obo:IAO_0000119 "WIKIPEDIA:Zebu)" ; obo:IAO_0000412 obo:foodon.owl ; oboInOwl:hasDbXref , , , , "MSW3:14200689" ; oboInOwl:hasNarrowSynonym "Bos taurus Linnaeus, 1758" , "Bos taurus indicus Linnaeus, 1758" ; oboInOwl:hasSynonym "bos indicus"@en , "bos taurus indicus"@en ; rdfs:label "zebu"@en . ### http://purl.obolibrary.org/obo/FOODON_03420116 obo:FOODON_03420116 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000040 , [ owl:intersectionOf ( obo:BFO_0000040 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0001000 ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( obo:NCBITaxon_33208 obo:NCBITaxon_4751 ) ] ] ) ; rdf:type owl:Class ] ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "Anatomical or other part(s) or substances derived from plant or animal or fungal organisms."@en ; obo:IAO_0000116 "This was renamed from \"part of organism\" (and from LanguaL's original \"part of plant or animal\") to encompass organism material that is produced by an animal or plant rather than \"part of\" it, such as an egg, and might not be countable per se, such as milk. Additionally the existing definition's \"from which a food product or its major ingredient is derived.\" was removed as an unnecessary constraint. [2023/03/02]"@en ; obo:IAO_0000412 obo:foodon.owl ; oboInOwl:hasDbXref ; rdfs:comment "LanguaL curation note: \"e.g. *LEAF*, *ROOT OR TUBER*, *ORGAN MEAT*, *MILK* OR *EGG*; it also includes components of parts, such as *CREAM*, and extracts, concentrates or isolates, such as *PROTEIN EXTRACT* or *SUGAR*.\""@en , """SuMSO developer comment: Future implementations will deepen this representation of organism material and pieces with regard to parenthood and derivation from origin organism."""@en , """SuMSO developer comment: We axiomatize this class according to FoodOn definition as judged enough adequate for the current purposes of SuMSO. Nevertheless, here, the term “organism” refers uniquely to Metazoa, Fungi, and plants, differing from the reference made by the class “organism”. Future revisions are required to harmonize the usage of the term organism."""@en ; rdfs:label "organism material"@en . ### http://purl.obolibrary.org/obo/FOODON_03420164 obo:FOODON_03420164 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_03420116 , [ owl:intersectionOf ( obo:FOODON_03420116 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0001000 ; owl:someValuesFrom obo:NCBITaxon_33208 ] ) ; rdf:type owl:Class ] ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "Material that derives from some animal."@en ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor "https://orcid.org/0000-0001-5275-8866" ; terms:date "2023-08-01T21:25:29Z"^^xsd:dateTime ; oboInOwl:hasDbXref ; rdfs:comment "Langual note: Includes eggs and milk that, although separated from the animal, are produced as integral parts and are affected by the animal's food intake and metabolism."@en , """SuMSO developer comment: Future implementations will extend the characterization of cow meat items and more general meat items. For instance, implementations will deepen the account of pieces of animals as such and as food products (by-products)."""@en , "This branch isn't necessarily food material"@en ; rdfs:label "animal material"@en ; rdfs:seeAlso """SuMSO: See also: http://purl.obolibrary.org/obo/FOODON_00004335 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00004332 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00001134 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00001041 and subclasses. http://purl.obolibrary.org/obo/UBERON_0000463 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_03420127 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00002403 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00001002 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00002381 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00004242 and relevant subclasses. http://purl.obolibrary.org/obo/FOODON_00001092 and relevant subclasses."""@en . ### http://purl.obolibrary.org/obo/FOODON_03530005 obo:FOODON_03530005 rdf:type owl:Class ; rdfs:subClassOf obo:IAO_0000027 ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A data item consisting of a claim or record of a food product's origin or processing history or suitability for some purpose."@en ; obo:IAO_0000117 "Damion Dooley" ; obo:IAO_0000118 "adjunct characteristics of food"@en ; obo:IAO_0000412 obo:foodon.owl ; oboInOwl:hasDbXref , ; rdfs:label "food datum"@en . ### http://purl.obolibrary.org/obo/FOODON_03601066 obo:FOODON_03601066 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_03602001 , [ owl:intersectionOf ( obo:FOODON_03602001 [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_about ; owl:someValuesFrom obo:AGRO_00000426 ] ) ; rdf:type owl:Class ] ; obo:IAO_0000114 "ready for release" ; obo:IAO_0000115 "A label claim that the animals which the food product derives from, were fed a grass or forage-based diet."@en ; obo:IAO_0000119 ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor , ; terms:date "2022-10-17T19:12:04Z"^^xsd:dateTime ; oboInOwl:hasExactSynonym """SuMSO developer: grass-fed"""@en ; rdfs:comment """SuMSO developer comment: Implementations will deepen the representation of this class and related subclasses. Axioms will be add to relate these classes to others."""@en ; rdfs:label "grass-fed food product claim"@en ; rdfs:seeAlso , . ### http://purl.obolibrary.org/obo/FOODON_03602001 obo:FOODON_03602001 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_03530005 ; obo:IAO_0000412 obo:foodon.owl ; terms:contributor , , "https://orcid.org/0000-0001-8008-8249" , "https://orcid.org/0000-0002-1107-9135" , "https://orcid.org/0000-0002-8844-9165" ; oboInOwl:hasDbXref ; rdfs:comment """SuMSO developer comment: we suggest to revise the label as this term applies to food."""@en ; rdfs:label "label claim"@en ; rdfs:seeAlso """SuMSO: see comments under the\"certification issuance process\" class."""@en . ### http://purl.obolibrary.org/obo/GSSO_008727 obo:GSSO_008727 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_03420164 , [ owl:intersectionOf ( obo:FOODON_03420164 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:FOODON_03420164 [ rdf:type owl:Restriction ; owl:onProperty obo:OBI_0000295 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; obo:IAO_0000115 "An animal skin treated for human use."@en ; obo:IAO_0000412 obo:gsso.owl ; oboInOwl:hasBroadSynonym "hides and skins"@en ; oboInOwl:hasDbXref "https://en.wikipedia.org/wiki/Category:Hides"^^xsd:anyURI , "https://en.wikipedia.org/wiki/Hide_(skin)"^^xsd:anyURI , "https://www.wikidata.org/wiki/Q3291230"^^xsd:anyURI ; rdfs:comment """SuMSO developer comment: Upper-level classes, such as animal skin, animal organ, are required."""@en ; rdfs:label "animal hide"@en ; "animal hides"@en ; "hide"@en ; ; "http://purl.bioontology.org/ontology/SNOMEDCT/421332005"^^xsd:anyURI ; . ### http://purl.obolibrary.org/obo/GSSO_008728 obo:GSSO_008728 rdf:type owl:Class ; rdfs:subClassOf obo:GSSO_008727 , [ owl:intersectionOf ( obo:GSSO_008727 [ rdf:type owl:Restriction ; owl:onProperty obo:OBI_0000312 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; obo:IAO_0000115 "A durable and flexible material created by tanning animal rawhide and skins. The most common raw material is cattle hide. It can be produced at manufacturing scales ranging from artisan to modern industrial scale."@en ; obo:IAO_0000412 obo:gsso.owl ; oboInOwl:hasDbXref "https://en.wikipedia.org/wiki/Category:Leather"^^xsd:anyURI , "https://en.wikipedia.org/wiki/Leather"^^xsd:anyURI , "https://www.wikidata.org/wiki/Q286"^^xsd:anyURI ; oboInOwl:hasSynonym "leather"@en ; rdfs:label "leather hide"@en ; "leather hides"@en ; "http://id.loc.gov/authorities/subjects/sh85075573"^^xsd:anyURI ; "TS940-TS1043" . ### http://purl.obolibrary.org/obo/IAO_0000005 obo:IAO_0000005 rdf:type owl:Class ; rdfs:subClassOf obo:IAO_0000033 ; obo:IAO_0000111 "objective specification"@en ; obo:IAO_0000112 "In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction."@en ; obo:IAO_0000115 "A directive information entity that describes an intended process endpoint. When part of a plan specification the concretization is realized in a planned process in which the bearer tries to effect the world so that the process endpoint is achieved."@en ; obo:IAO_0000116 "2009-03-16: original definition when imported from OBI read: \"objective is an non realizable information entity which can serve as that proper part of a plan towards which the realization of the plan is directed.\""@en , "2014-03-31: In the example of usage (\"In the protocol of a ChIP assay the objective specification says to identify protein and DNA interaction\") there is a protocol which is the ChIP assay protocol. In addition to being concretized on paper, the protocol can be concretized as a realizable entity, such as a plan that inheres in a person. The objective specification is the part that says that some protein and DNA interactions are identified. This is a specification of a process endpoint: the boundary in the process before which they are not identified and after which they are. During the realization of the plan, the goal is to get to the point of having the interactions, and participants in the realization of the plan try to do that."@en , "Answers the question, why did you do this experiment?"@en ; obo:IAO_0000117 "PERSON: Alan Ruttenberg"@en , "PERSON: Barry Smith"@en , "PERSON: Bjoern Peters"@en , "PERSON: Jennifer Fostel"@en ; obo:IAO_0000118 "goal specification"@en ; obo:IAO_0000119 "OBI Plan and Planned Process/Roles Branch"@en , "OBI_0000217"@en ; obo:IAO_0000412 obo:iao.owl ; rdfs:label "objective specification"@en . ### http://purl.obolibrary.org/obo/IAO_0000007 obo:IAO_0000007 rdf:type owl:Class ; rdfs:subClassOf obo:IAO_0000033 ; obo:IAO_0000112 "Pour the contents of flask 1 into flask 2"@en ; obo:IAO_0000115 "A directive information entity that describes an action the bearer will take."@en ; obo:IAO_0000117 "Alan Ruttenberg"@en ; obo:IAO_0000119 "OBI Plan and Planned Process branch"@en ; obo:IAO_0000412 obo:iao.owl ; rdfs:label "action specification"@en . ### http://purl.obolibrary.org/obo/IAO_0000027 obo:IAO_0000027 rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:InformationContentEntity ; obo:IAO_0000111 "data item"@en ; obo:IAO_0000112 "Data items include counts of things, analyte concentrations, and statistical summaries."@en ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements."@en ; obo:IAO_0000116 "2/2/2009 Alan and Bjoern discussing FACS run output data. This is a data item because it is about the cell population. Each element records an event and is typically further composed a set of measurment data items that record the fluorescent intensity stimulated by one of the lasers."@en , "2009-03-16: data item deliberatly ambiguous: we merged data set and datum to be one entity, not knowing how to define singular versus plural. So data item is more general than datum."@en , "2009-03-16: removed datum as alternative term as datum specifically refers to singular form, and is thus not an exact synonym."@en , """JAR: datum -- well, this will be very tricky to define, but maybe some information-like stuff that might be put into a computer and that is meant, by someone, to denote and/or to be interpreted by some process... I would include lists, tables, sentences... I think I might defer to Barry, or to Brian Cantwell Smith JAR: A data item is an approximately justified approximately true approximate belief"""@en , "2014-03-31: See discussion at http://odontomachus.wordpress.com/2014/03/30/aboutness-objects-propositions/" ; obo:IAO_0000117 "PERSON: Alan Ruttenberg"@en , "PERSON: Chris Stoeckert"@en , "PERSON: Jonathan Rees"@en ; obo:IAO_0000118 "data"@en ; obo:IAO_0000412 obo:foodon.owl , obo:iao.owl , obo:obi.owl , obo:ons.owl ; rdfs:label "data item"@en . ### http://purl.obolibrary.org/obo/IAO_0000033 obo:IAO_0000033 rdf:type owl:Class ; owl:equivalentClass CommonCoreOntologies:DirectiveInformationContentEntity ; rdfs:subClassOf CommonCoreOntologies:InformationContentEntity , [ rdf:type owl:Restriction ; owl:onProperty obo:IAO_0000136 ; owl:someValuesFrom obo:BFO_0000017 ] ; obo:IAO_0000115 "An information content entity whose concretizations indicate to their bearer how to realize them in a process."@en ; obo:IAO_0000116 "2009-03-16: provenance: a term realizable information entity was proposed for OBI (OBI_0000337) , edited by the PlanAndPlannedProcess branch. Original definition was \"is the specification of a process that can be concretized and realized by an actor\" with alternative term \"instruction\".It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term."@en , "2013-05-30 Alan Ruttenberg: What differentiates a directive information entity from an information concretization is that it can have concretizations that are either qualities or realizable entities. The concretizations that are realizable entities are created when an individual chooses to take up the direction, i.e. has the intention to (try to) realize it."@en , "8/6/2009 Alan Ruttenberg: Changed label from \"information entity about a realizable\" after discussions at ICBO"@en , "Werner pushed back on calling it realizable information entity as it isn't realizable. However this name isn't right either. An example would be a recipe. The realizable entity would be a plan, but the information entity isn't about the plan, it, once concretized, *is* the plan. -Alan"@en ; obo:IAO_0000117 "PERSON: Alan Ruttenberg"@en , "PERSON: Bjoern Peters"@en ; obo:IAO_0000412 obo:iao.owl ; rdfs:comment """SuMSO developer comment: Both CCO and IAO cover a “directive information (content) entity” class. Despite being in line, the class definitions present slight differences. For reasons of practicality, we assumed that the two classes correspond and are equivalent. Future works will require more discussion regarding the alignment of the two classes. http://purl.obolibrary.org/obo/IAO_0000033 http://www.ontologyrepository.com/CommonCoreOntologies/DirectiveInformationContentEntity"""@en ; rdfs:label "directive information entity"@en . ### http://purl.obolibrary.org/obo/IAO_0000104 obo:IAO_0000104 rdf:type owl:Class ; rdfs:subClassOf obo:IAO_0000033 , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000051 ; owl:someValuesFrom obo:IAO_0000005 ] , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000051 ; owl:someValuesFrom obo:IAO_0000007 ] ; obo:IAO_0000111 "plan specification"@en ; obo:IAO_0000112 "PMID: 18323827.Nat Med. 2008 Mar;14(3):226.New plan proposed to help resolve conflicting medical advice."@en ; obo:IAO_0000115 "A directive information entity with action specifications and objective specifications as parts, and that may be concretized as a realizable entity that, if realized, is realized in a process in which the bearer tries to achieve the objectives by taking the actions specified."@en ; obo:IAO_0000116 "2009-03-16: provenance: a term a plan was proposed for OBI (OBI_0000344) , edited by the PlanAndPlannedProcess branch. Original definition was \" a plan is a specification of a process that is realized by an actor to achieve the objective specified as part of the plan\". It has been subsequently moved to IAO where the objective for which the original term was defined was satisfied with the definitionof this, different, term."@en , "2014-03-31: A plan specification can have other parts, such as conditional specifications."@en , "2022-01-16 Updated definition to that proposed by Clint Dowloand, IAO Issue 231."@en , "Alternative previous definition: a plan is a set of instructions that specify how an objective should be achieved"@en ; obo:IAO_0000117 "Alan Ruttenberg"@en , "Clint Dowland"@en ; obo:IAO_0000119 "OBI Plan and Planned Process branch"@en , "OBI_0000344"@en ; obo:IAO_0000412 obo:iao.owl ; rdfs:comment """2/3/2009 Comment from OBI review. Action specification not well enough specified. Conditional specification not well enough specified. Question whether all plan specifications have objective specifications. Request that IAO either clarify these or change definitions not to use them"""@en , """SuMSO developer comment: See comment under \"complex system activity\" and \"supply chain\" classes."""@en ; rdfs:label "plan specification"@en ; rdfs:seeAlso "https://github.com/information-artifact-ontology/IAO/issues/231#issuecomment-1010455131"@en . ### http://purl.obolibrary.org/obo/IAO_0000310 obo:IAO_0000310 rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:InformationContentEntity ; obo:IAO_0000111 "document"@en ; obo:IAO_0000112 "A journal article, patent application, laboratory notebook, or a book"@en ; obo:IAO_0000114 obo:IAO_0000120 ; obo:IAO_0000115 "A collection of information content entities intended to be understood together as a whole"@en ; obo:IAO_0000117 "PERSON: Lawrence Hunter"@en ; obo:IAO_0000412 obo:iao.owl ; rdfs:label "document"@en . ### http://purl.obolibrary.org/obo/NCBITaxon_10239 obo:NCBITaxon_10239 rdf:type owl:Class ; rdfs:subClassOf obo:OBI_0100026 ; obo:IAO_0000111 "Viruses" ; obo:IAO_0000412 obo:ncbitaxon.owl , obo:obi.owl ; rdfs:label "Viruses" . ### http://purl.obolibrary.org/obo/NCBITaxon_131567 obo:NCBITaxon_131567 rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( obo:NCBITaxon_2 obo:NCBITaxon_2157 obo:NCBITaxon_2759 ) ] ; rdfs:subClassOf obo:OBI_0100026 ; obo:IAO_0000412 obo:ncbitaxon.owl ; oboInOwl:hasDbXref "GC_ID:1" ; oboInOwl:hasOBONamespace "ncbi_taxonomy" ; oboInOwl:hasRelatedSynonym "biota" ; rdfs:label "cellular organisms" . ### http://purl.obolibrary.org/obo/NCBITaxon_2 obo:NCBITaxon_2 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_131567 ; obo:IAO_0000412 obo:ncbitaxon.owl ; obo:NCBITaxon_superkingdom ; oboInOwl:hasDbXref "GC_ID:11" , "PMID:10425795" , "PMID:10425796" , "PMID:10425797" , "PMID:10490293" , "PMID:10843050" , "PMID:10939651" , "PMID:10939673" , "PMID:10939677" , "PMID:11211268" , "PMID:11321083" , "PMID:11321113" , "PMID:11411719" , "PMID:11540071" , "PMID:11542017" , "PMID:11542087" , "PMID:11760965" , "PMID:12054223" , "PMID:270744" , "PMID:32628106" , "PMID:36748408" , "PMID:7520741" , "PMID:8123559" , "PMID:8186100" , "PMID:8590690" , "PMID:9103655" , "PMID:9336922" ; oboInOwl:hasExactSynonym "eubacteria" ; oboInOwl:hasOBONamespace "ncbi_taxonomy" ; oboInOwl:hasRelatedSynonym "Bacteria (ex Cavalier-Smith 1987)" , "Bacteria Woese et al. 2024" , "Bacteriobiota" , "Monera" , "Procaryotae" , "Prokaryota" , "Prokaryotae" , "bacteria" , "prokaryote" , "prokaryotes" ; rdfs:label "Bacteria" . ### http://purl.obolibrary.org/obo/NCBITaxon_2157 obo:NCBITaxon_2157 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_131567 ; obo:IAO_0000412 obo:ncbitaxon.owl ; obo:NCBITaxon_superkingdom ; oboInOwl:hasDbXref "GC_ID:11" , "PMID:10425795" , "PMID:10425796" , "PMID:10425797" , "PMID:10490293" , "PMID:10843050" , "PMID:10939651" , "PMID:10939673" , "PMID:10939677" , "PMID:11211268" , "PMID:11321083" , "PMID:11321113" , "PMID:11411719" , "PMID:11540071" , "PMID:11541975" , "PMID:11542064" , "PMID:11542149" , "PMID:11760965" , "PMID:12054223" , "PMID:25527841" , "PMID:270744" , "PMID:32628106" , "PMID:36748408" , "PMID:8123559" , "PMID:8590690" , "PMID:9103655" , "PMID:9336922" ; oboInOwl:hasOBONamespace "ncbi_taxonomy" ; oboInOwl:hasRelatedSynonym "Archaebacteria" , "Archaebiota" , "Mendosicutes" , "Metabacteria" , "Monera" , "Procaryotae" , "Prokaryota" , "Prokaryotae" , "archaea" , "prokaryote" , "prokaryotes" ; rdfs:label "Archaea" . ### http://purl.obolibrary.org/obo/NCBITaxon_2759 obo:NCBITaxon_2759 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_131567 ; obo:IAO_0000412 obo:ncbitaxon.owl ; obo:NCBITaxon_superkingdom ; oboInOwl:hasDbXref "GC_ID:1" , "PMID:23020233" , "PMID:30257078" ; oboInOwl:hasExactSynonym "eucaryotes" , "eukaryotes" ; oboInOwl:hasOBONamespace "ncbi_taxonomy" ; oboInOwl:hasRelatedSynonym "Eucarya" , "Eucaryotae" , "Eukarya" , "Eukaryotae" , "eukaryotes" ; rdfs:label "Eukaryota" . ### http://purl.obolibrary.org/obo/NCBITaxon_27592 obo:NCBITaxon_27592 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_9895 ; obo:IAO_0000412 obo:foodon.owl , obo:ncbitaxon.owl ; rdfs:label "Bovinae" . ### http://purl.obolibrary.org/obo/NCBITaxon_30520 obo:NCBITaxon_30520 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_9903 , ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "A large domestic bovine distributed in Northeast India, Bangladesh, northern Myanmar and in Yunnan, China."@en ; obo:IAO_0000118 "gayal"@en ; obo:IAO_0000119 ; obo:IAO_0000412 , obo:foodon.owl , obo:ncbitaxon.owl ; oboInOwl:hasDbXref , , , "MSW3:14200675" ; oboInOwl:hasExactSynonym "Bos frontalis"@en , "mithun"@en , "gayal" , "mithun" ; oboInOwl:hasNarrowSynonym "Bos frontalis Lambert, 1804" ; oboInOwl:hasSynonym "mithan"@en ; rdfs:label "Bos frontalis" . ### http://purl.obolibrary.org/obo/NCBITaxon_30521 obo:NCBITaxon_30521 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_9903 , ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "The yak (Bos grunniens) is a long-haired humped domestic bovine found in Tibet and throughout the Himalayan region of south central Asia. In Tibetan, the word yak refers only to the male of the species; a female is a dri or nak. In English, however, yak is usually used for both sexes. Wild yaks (Bos mutus) stand about two meters tall at the shoulder. Domestic yaks are about half that height. Both types have long shaggy hair to insulate them from the cold. Wild yaks can be either brown or black. Domesticated ones can also be white. Both males and females have horns. The word Yak is also used to describe an irritating or disagreeable individual."@en ; obo:IAO_0000118 "yak"@en ; obo:IAO_0000119 "WIKIPEDIA:Yak" ; obo:IAO_0000412 , obo:foodon.owl , obo:ncbitaxon.owl ; oboInOwl:hasDbXref , , , "MSW3:14200680" ; oboInOwl:hasExactSynonym "domestic yak" , "yak" ; oboInOwl:hasNarrowSynonym "Bos grunniens Linnaeus, 1766" ; oboInOwl:hasSynonym "bos grunniens"@en , "grunting ox"@en ; rdfs:label "Bos grunniens" . ### http://purl.obolibrary.org/obo/NCBITaxon_33208 obo:NCBITaxon_33208 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_2759 ; obo:IAO_0000412 obo:ncbitaxon.owl ; obo:NCBITaxon_kingdom ; oboInOwl:hasDbXref "GC_ID:1" ; oboInOwl:hasExactSynonym "metazoans" , "multicellular animals" ; oboInOwl:hasOBONamespace "ncbi_taxonomy" ; oboInOwl:hasRelatedSynonym "Animalia" , "animals" ; rdfs:label "Metazoa" . ### http://purl.obolibrary.org/obo/NCBITaxon_4751 obo:NCBITaxon_4751 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_2759 ; obo:IAO_0000412 obo:ncbitaxon.owl ; obo:NCBITaxon_kingdom ; oboInOwl:hasDbXref "GC_ID:1" , "PMID:11062127" , "PMID:12684019" ; oboInOwl:hasOBONamespace "ncbi_taxonomy" ; oboInOwl:hasRelatedSynonym "Mycota" , "fungi" ; rdfs:label "Fungi" . ### http://purl.obolibrary.org/obo/NCBITaxon_9605 obo:NCBITaxon_9605 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_33208 ; obo:IAO_0000412 obo:ncbitaxon.owl ; obo:NCBITaxon_genus ; oboInOwl:hasDbXref "GC_ID:1" ; oboInOwl:hasExactSynonym "humans" ; oboInOwl:hasOBONamespace "ncbi_taxonomy" ; rdfs:label "Homo" . ### http://purl.obolibrary.org/obo/NCBITaxon_9606 obo:NCBITaxon_9606 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_9605 , [ owl:intersectionOf ( obo:NCBITaxon_9605 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith obo:OBI_0000245 ; obo:IAO_0000412 obo:ncbitaxon.owl ; obo:NCBITaxon_species ; oboInOwl:hasDbXref "GC_ID:1" ; oboInOwl:hasExactSynonym "human" ; oboInOwl:hasOBONamespace "ncbi_taxonomy" ; oboInOwl:hasRelatedSynonym """SuMSO: person"""@en ; rdfs:comment """SuMSO developer comment: We initially dedicated attention to humans and cows due to the primary role played in meat systems. Future implementations will include other specific subclasses to account for additional eucaryotes that are possibly involved in meat systems."""@en ; rdfs:label "Homo sapiens" . ### http://purl.obolibrary.org/obo/NCBITaxon_9895 obo:NCBITaxon_9895 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_33208 ; obo:IAO_0000412 obo:foodon.owl , obo:ncbitaxon.owl ; rdfs:label "Bovidae" . ### http://purl.obolibrary.org/obo/NCBITaxon_9903 obo:NCBITaxon_9903 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_27592 ; obo:IAO_0000412 obo:foodon.owl , obo:ncbitaxon.owl ; oboInOwl:hasExactSynonym "oxen, cattle" ; rdfs:label "Bos" . ### http://purl.obolibrary.org/obo/NCBITaxon_9906 obo:NCBITaxon_9906 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_9903 ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "A species of wild cattle found in Southeast Asia."@en ; obo:IAO_0000118 "banteng"@en ; obo:IAO_0000119 ; obo:IAO_0000412 , obo:foodon.owl , obo:ncbitaxon.owl ; oboInOwl:hasDbXref , , , "MSW3:14200683" ; oboInOwl:hasExactSynonym "Bos javanicus"@en , "tembadau"@en , "banteng" , "wild banteng" ; oboInOwl:hasNarrowSynonym "Bos javanicus d'Alton, 1823" ; rdfs:label "Bos javanicus" . ### http://purl.obolibrary.org/obo/NCBITaxon_9913 obo:NCBITaxon_9913 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_9903 , , [ owl:intersectionOf ( obo:NCBITaxon_9903 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:NCBITaxon_9903 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:NCBITaxon_9903 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:NCBITaxon_9903 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:NCBITaxon_9903 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; obo:IAO_0000115 "Cattle (colloquially cows) are the most common type of large domesticated ungulates. They are a prominent modern member of the subfamily *Bovinae*, are the most widespread species of the genus *Bos*, and are most commonly classified collectively as *Bos taurus*... with three subspecies: *Bos taurus primigenius, Bos taurus indicus, Bos taurus taurus*."@en ; obo:IAO_0000118 "cattle"@en ; obo:IAO_0000119 ; obo:IAO_0000412 obo:foodon.owl , obo:ncbitaxon.owl ; obo:NCBITaxon_species ; oboInOwl:hasAlternativeId "NCBITaxon:272461" ; oboInOwl:hasDbXref , , , "MSW3:14200687"@en , "GC_ID:1" ; oboInOwl:hasExactSynonym "Bos taurus Linnaeus, 1758"@en , "bovine" , "cattle" , "cow" , "dairy cow" , "domestic cattle" , "domestic cow" , "ox" ; oboInOwl:hasOBONamespace "ncbi_taxonomy" ; oboInOwl:hasRelatedSynonym "Bos bovis" , "Bos primigenius taurus" ; rdfs:comment """SuMSO See also: http://purl.obolibrary.org/obo/FOODON_03414374 and subclasses. http://purl.obolibrary.org/obo/FOODON_02020893 and subclasses."""@en , """SuMSO developer comment: Currently, SuMSO represents meat supply chain activities (and related planned processes), related inputs and outputs, and meat system features, focusing on Bos taurus, especially beef cattle (adult organisms). Further implementations will expand coverage to other types of cows, species, animal sex, different stages of age, i.e. veal, and corresponding involvement in meat supply chains. Implementations will equally deepen the characterization of cow designation based on involvement and functions within meat supply chains and animal age."""@en , """SuMSO developer comment: We initially dedicated attention to humans and cows due to the primary role played in meat systems. Future implementations will include other specific subclasses to account for additional eucaryotes that are possibly involved in meat systems."""@en ; rdfs:label "Bos taurus" ; rdfs:seeAlso . ### http://purl.obolibrary.org/obo/NCIT_C53568 obo:NCIT_C53568 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:NCBITaxon_9606 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:NCBITaxon_9606 ; rdfs:comment """SuMSO developer comment: we envision revisions of this definition. See the corresponding “role” class we created."""@en . ### http://purl.obolibrary.org/obo/OBI_0000011 obo:OBI_0000011 rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000055 ; owl:someValuesFrom [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000059 ; owl:someValuesFrom obo:IAO_0000104 ] ] ; rdfs:subClassOf obo:BFO_0000015 ; obo:IAO_0000111 "planned process"@en , "planned process" ; obo:IAO_0000112 "Injecting mice with a vaccine in order to test its efficacy" ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A process that realizes a plan which is the concretization of a plan specification."@en ; obo:IAO_0000116 "'Plan' includes a future direction sense. That can be problematic if plans are changed during their execution. There are however implicit contingencies for protocols that an agent has in his mind that can be considered part of the plan, even if the agent didn't have them in mind before. Therefore, a planned process can diverge from what the agent would have said the plan was before executing it, by adjusting to problems encountered during execution (e.g. choosing another reagent with equivalent properties, if the originally planned one has run out.)" , """We are only considering successfully completed planned processes. A plan may be modified, and details added during execution. For a given planned process, the associated realized plan specification is the one encompassing all changes made during execution. This means that all processes in which an agent acts towards achieving some objectives is a planned process.""" ; obo:IAO_0000117 "Bjoern Peters" ; obo:IAO_0000119 "branch derived" ; obo:IAO_0000232 "This class merges the previously separated objective driven process and planned process, as they the separation proved hard to maintain. (1/22/09, branch call)"@en , "6/11/9: Edited at workshop. Used to include: is initiated by an agent" ; obo:IAO_0000412 obo:obi.owl ; rdfs:comment """SuMSO creator comment: see also https://spec.industrialontologies.org/ontology/core/Core/PlannedProcess"""@en , """SuMSO creator comment: see comments under \"complex system activity\" and \"supply chain\" classes."""@en , """SuMSO developer comment: Currently, SuMSO represents meat supply chain activities (and related planned processes) and related inputs and outputs, focusing on Bos taurus, especially beef cattle (adult organisms). Further implementations will expand coverage to other types of cows, species, animal sex, different stages of age, i.e. veal, and corresponding involvement in meat supply chains. Implementations will equally deepen the characterization of cow designation based on involvement and functions within meat supply chains and animal age."""@en ; rdfs:label "planned process"@en . ### http://purl.obolibrary.org/obo/OBI_0000094 obo:OBI_0000094 rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Restriction ; owl:onProperty obo:OBI_0000417 ; owl:someValuesFrom obo:OBI_0000456 ] ; rdfs:subClassOf obo:OBI_0000011 , [ rdf:type owl:Restriction ; owl:onProperty obo:OBI_0000293 ; owl:allValuesFrom obo:BFO_0000040 ] ; obo:IAO_0000111 "material processing" ; obo:IAO_0000112 "A cell lysis, production of a cloning vector, creating a buffer." ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A planned process which results in physical changes in a specified input material"@en ; obo:IAO_0000117 "PERSON: Bjoern Peters"@en , "PERSON: Frank Gibson" , "PERSON: Jennifer Fostel" , "PERSON: Melanie Courtot" , "PERSON: Philippe Rocca Serra" ; obo:IAO_0000118 "material transformation"@en ; obo:IAO_0000119 "OBI branch derived"@en ; obo:IAO_0000412 obo:obi.owl ; rdfs:label "material processing"@en . ### http://purl.obolibrary.org/obo/OBI_0000245 obo:OBI_0000245 rdf:type owl:Class ; rdfs:subClassOf [ owl:intersectionOf ( obo:BFO_0000027 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000115 ; owl:someValuesFrom obo:NCBITaxon_9606 ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:BFO_0000027 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; obo:IAO_0000111 "organization"@en ; obo:IAO_0000112 "PMID: 16353909.AAPS J. 2005 Sep 22;7(2):E274-80. Review. The joint food and agriculture organization of the United Nations/World Health Organization Expert Committee on Food Additives and its role in the evaluation of the safety of veterinary drug residues in foods."@en ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "An entity that can bear roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members."@en ; obo:IAO_0000116 """BP: The definition summarizes long email discussions on the OBI developer, roles, biomaterial and denrie branches. It leaves open if an organization is a material entity or a dependent continuant, as no consensus was reached on that. The current placement as material is therefore temporary, in order to move forward with development. Here is the entire email summary, on which the definition is based: 1) there are organization_member_roles (president, treasurer, branch editor), with individual persons as bearers 2) there are organization_roles (employer, owner, vendor, patent holder) 3) an organization has a charter / rules / bylaws, which specify what roles there are, how they should be realized, and how to modify the charter/rules/bylaws themselves. It is debatable what the organization itself is (some kind of dependent continuant or an aggregate of people). This also determines who/what the bearer of organization_roles' are. My personal favorite is still to define organization as a kind of 'legal entity', but thinking it through leads to all kinds of questions that are clearly outside the scope of OBI. Interestingly enough, it does not seem to matter much where we place organization itself, as long as we can subclass it (University, Corporation, Government Agency, Hospital), instantiate it (Affymetrix, NCBI, NIH, ISO, W3C, University of Oklahoma), and have it play roles. This leads to my proposal: We define organization through the statements 1 - 3 above, but without an 'is a' statement for now. We can leave it in its current place in the is_a hierarchy (material entity) or move it up to 'continuant'. We leave further clarifications to BFO, and close this issue for now."""@en ; obo:IAO_0000117 "PERSON: Alan Ruttenberg" , "PERSON: Bjoern Peters" , "PERSON: Philippe Rocca-Serra" , "PERSON: Susanna Sansone" ; obo:IAO_0000119 "GROUP: OBI" ; obo:IAO_0000412 obo:obi.owl ; rdfs:comment """SuMSO comment: according to CCO and IOF, we positioned this class as a subclass of the class \"object aggregate\"."""@en ; rdfs:label "organization"@en ; rdfs:seeAlso """SuMSO developer: see also CCO and IOF corresponding classes. https://spec.industrialontologies.org/ontology/core/Core/Organization http://www.ontologyrepository.com/CommonCoreOntologies/Organization"""@en . ### http://purl.obolibrary.org/obo/OBI_0000260 obo:OBI_0000260 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000017 ; obo:IAO_0000111 "plan"@en ; obo:IAO_0000112 "The plan of researcher X to perform an experiment according to a protocol." ; obo:IAO_0000115 "A plan is a realizable entity that is the inheres in a bearer who is committed to realizing it as a planned process."@en ; obo:IAO_0000116 "This class is included to make clear how the plan specification, the plan, and the planned process relate. OBI will however only subclass and work under the 'plan specification', and 'planned process' class, as we want to avoid to get deep into discussions of 'intend' etc." ; obo:IAO_0000117 "AR, BP, JM, MC, PRS"@en ; obo:IAO_0000119 "branch derived"@en ; obo:IAO_0000412 obo:obi.owl ; rdfs:comment """SuMSO creator comment: see the comment under \"complex system activity\" and \"supply chain\" classes."""@en ; rdfs:label "plan"@en . ### http://purl.obolibrary.org/obo/OBI_0000456 obo:OBI_0000456 rdf:type owl:Class ; rdfs:subClassOf obo:IAO_0000005 ; obo:IAO_0000111 "material transformation objective" ; obo:IAO_0000112 "The objective to create a mouse infected with LCM virus. The objective to create a defined solution of PBS." ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "an objective specifiction that creates an specific output object from input materials."@en ; obo:IAO_0000117 "PERSON: Bjoern Peters" , "PERSON: Frank Gibson" , "PERSON: Jennifer Fostel" , "PERSON: Melanie Courtot" , "PERSON: Philippe Rocca-Serra" ; obo:IAO_0000118 "artifact creation objective"@en ; obo:IAO_0000119 "GROUP: OBI PlanAndPlannedProcess Branch" ; obo:IAO_0000412 obo:obi.owl ; rdfs:label "material transformation objective"@en . ### http://purl.obolibrary.org/obo/OBI_0100026 obo:OBI_0100026 rdf:type owl:Class ; owl:equivalentClass [ rdf:type owl:Class ; owl:unionOf ( obo:NCBITaxon_10239 obo:NCBITaxon_2 obo:NCBITaxon_2157 obo:NCBITaxon_2759 ) ] ; rdfs:subClassOf obo:BFO_0000040 , [ owl:intersectionOf ( obo:BFO_0000040 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000086 ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( obo:PATO_0001421 obo:PATO_0001422 ) ] ] ) ; rdf:type owl:Class ] ; obo:IAO_0000111 "organism"@en ; obo:IAO_0000112 "animal"@en , "fungus"@en , "plant"@en , "virus"@en ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs."@en ; obo:IAO_0000116 "10/21/09: This is a placeholder term, that should ideally be imported from the NCBI taxonomy, but the high level hierarchy there does not suit our needs (includes plasmids and 'other organisms')" , """13-02-2009: OBI doesn't take position as to when an organism starts or ends being an organism - e.g. sperm, foetus. This issue is outside the scope of OBI.""" ; obo:IAO_0000117 "GROUP: OBI Biomaterial Branch" ; obo:IAO_0000119 "WEB: http://en.wikipedia.org/wiki/Organism"@en ; obo:IAO_0000412 obo:obi.owl ; rdfs:comment """SuMSO developer comment: Organisms are complex systems. Thus, this ontology branch should be positioned under the “complex system” class. We did not proceed as such because, for the current purposes of SuMSO, this representation is enough adequate. Implementations will address this aspect in accordance with SCO implementation with regard to system granularity."""@en , """SuMSO developer comment: We provided the following axiom to ensure reference to life-death: 'material entity' and ('has quality' some (alive or dead)) According to OBI, SuMSO currently classifies viruses as organisms. We leave open the debate of whether viruses are alive or not. We strongly envision discussion with subject matter experts to revise this branch, especially with regard to the relationship among organisms, carcasses, and death/life. Even if we included reference to “dead” quality, SuMSO currently does not include carcasses as animals. See http://purl.obolibrary.org/obo/FOODON_03411564 for consideration of an alternative classification to complement this one. Implementations will equally cover the inclusion of the “multicellular organism” class with this hierarchy, and the reorganization of other subclasses of this ontology branch."""@en ; rdfs:label "organism"@en . ### http://purl.obolibrary.org/obo/OBI_0600006 obo:OBI_0600006 rdf:type owl:Class ; rdfs:subClassOf obo:OBI_0000094 , [ rdf:type owl:Restriction ; owl:onProperty obo:OBI_0000293 ; owl:someValuesFrom [ owl:intersectionOf ( obo:OBI_0100026 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000086 ; owl:someValuesFrom obo:PATO_0001421 ] ) ; rdf:type owl:Class ] ] , [ rdf:type owl:Restriction ; owl:onProperty obo:OBI_0000299 ; owl:someValuesFrom [ owl:intersectionOf ( obo:OBI_0100026 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000086 ; owl:someValuesFrom obo:PATO_0001422 ] ) ; rdf:type owl:Class ] ] , [ rdf:type owl:Restriction ; owl:onProperty obo:OBI_0000417 ; owl:someValuesFrom obo:OBI_0000456 ] ; obo:IAO_0000111 "killing"@en ; obo:IAO_0000112 "Terminal sacrifice of animals by cervical dislocation at the end of an investigation."@en ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "A protocol application in which an organism is intentionally put to death"@en ; obo:IAO_0000116 "difficult to place this properly - JG. Death process (e.g. unscheduled death) is out of scope but should be added somewhere. All killings have death process as a part, but not all death processes are part of a killing."@en ; obo:IAO_0000117 "Jennifer Fostel"@en , "Philippe Rocca-Serra" ; obo:IAO_0000118 "death status type"@en , "euthanisia"@en , "life termination"@en , "sacrifice"@en ; obo:IAO_0000119 "CEBS, Biomaterial_branch"@en ; obo:IAO_0000412 obo:obi.owl ; rdfs:label "killing"@en . ### http://purl.obolibrary.org/obo/OCCO_00000118 obo:OCCO_00000118 rdf:type owl:Class ; rdfs:subClassOf obo:IAO_0000310 ; obo:IAO_0000115 "A document issued by a third party recognized as bearing the relevant authority to do so, that is designed to be about an entity's competence, qualifications, or authority." ; obo:IAO_0000117 "Bill Duncan" , "Bill Hogan" , "Finn Wilson" , "Giacomo De Colle" , "Jie Zheng" , "John Beverley" , "Matthew Diller" , "Oliver He" , "Robin McGill" , "Sam Smith" ; obo:IAO_0000119 "https://storage.googleapis.com/wzukusers/user-12947767/documents/2c18c4f456ce4f6eab176c0983f75791/FOIS_2023_paper_920.pdf" , "https://www.degruyter.com/document/doi/10.1515/jso-2019-0034/html" ; obo:IAO_0000233 "https://github.com/Occupation-Ontology/OccO/issues/31" ; obo:IAO_0000412 obo:occo.owl ; rdfs:label "credential" . ### http://purl.obolibrary.org/obo/OCCO_00000119 obo:OCCO_00000119 rdf:type owl:Class ; rdfs:subClassOf obo:OCCO_00000118 ; obo:IAO_0000115 "A credential that is designed to be about an organism's competence or qualifications with respect to an occupation." ; obo:IAO_0000117 "Bill Duncan" , "Jie Zheng" , "John Beverley" , "Matthew Diller" , "Oliver He" , "Robin McGill" , "Sam Smith" ; obo:IAO_0000119 "https://storage.googleapis.com/wzukusers/user-12947767/documents/2c18c4f456ce4f6eab176c0983f75791/FOIS_2023_paper_920.pdf" , "https://www.degruyter.com/document/doi/10.1515/jso-2019-0034/html" ; obo:IAO_0000412 obo:occo.owl ; rdfs:label "occupational credential" . ### http://purl.obolibrary.org/obo/OCCO_00000123 obo:OCCO_00000123 rdf:type owl:Class ; rdfs:subClassOf obo:OCCO_00000118 ; obo:IAO_0000115 "A credential awarded by a credential granting agency designed to signify participation in or completion of a training program requiring the demonstration of some specified knowledge or skill." ; obo:IAO_0000117 "Bill Duncan" , "Bill Hogan" , "Finn Wilson" , "Giacomo De Colle" , "Jie Zheng" , "John Beverley" , "Matthew Diller" , "Oliver He" , "Robin McGill" , "Sam Smith" ; obo:IAO_0000412 obo:occo.owl ; rdfs:label "certificate" . ### http://purl.obolibrary.org/obo/OCCO_00000124 obo:OCCO_00000124 rdf:type owl:Class ; rdfs:subClassOf obo:OCCO_00000118 , [ owl:intersectionOf ( obo:OCCO_00000118 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; obo:IAO_0000115 "A credential awarded by a professional organization designed to signify the holder's competence as measured against a specified professional benchmark." ; obo:IAO_0000117 "Bill Duncan" , "Bill Hogan" , "Finn Wilson" , "Giacomo De Colle" , "Jie Zheng" , "John Beverley" , "Matthew Diller" , "Oliver He" , "Robin McGill" , "Sam Smith" ; obo:IAO_0000412 obo:occo.owl ; rdfs:comment """SuMSO developer comment: We included the other \"document\" subclasses for possible SuMSO implementations."""@en ; rdfs:label "certification" ; rdfs:seeAlso """SuMSO: http://schema.org/Certification http://purl.obolibrary.org/obo/OMIT_0003897 http://purl.obolibrary.org/obo/NCIT_C43610 http://purl.bioontology.org/ontology/MESH/D002568 http://id.agrisemantics.org/gacs/C9271 http://aims.fao.org/aos/agrovoc/c_35702""" . ### http://purl.obolibrary.org/obo/OCCO_00000126 obo:OCCO_00000126 rdf:type owl:Class ; rdfs:subClassOf obo:OCCO_00000118 ; obo:IAO_0000115 "A credential awarded by a government or government-authorized agency designed to signify legal authority to engage in specified actions without being liable to sanctions or penalties that would otherwise be associated with those actions." ; obo:IAO_0000117 "Bill Duncan" , "Bill Hogan" , "Finn Wilson" , "Giacomo De Colle" , "Jie Zheng" , "John Beverley" , "Matthew Diller" , "Oliver He" , "Robin McGill" , "Sam Smith" ; obo:IAO_0000412 obo:occo.owl ; rdfs:label "license" . ### http://purl.obolibrary.org/obo/PATO_0000047 obo:PATO_0000047 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000019 ; obo:IAO_0000115 "An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved." ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "biological sex" . ### http://purl.obolibrary.org/obo/PATO_0000169 obo:PATO_0000169 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0001995 ; obo:IAO_0000111 "viability" ; obo:IAO_0000115 "An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population." ; obo:IAO_0000412 obo:obi.owl , obo:pato.owl ; rdfs:label "viability" . ### http://purl.obolibrary.org/obo/PATO_0000383 obo:PATO_0000383 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0001894 ; obo:IAO_0000115 "A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes." ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "female" . ### http://purl.obolibrary.org/obo/PATO_0000384 obo:PATO_0000384 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0001894 ; obo:IAO_0000115 "A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes." ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "male" . ### http://purl.obolibrary.org/obo/PATO_0001241 obo:PATO_0001241 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000019 ; obo:IAO_0000111 "physical object quality" ; obo:IAO_0000115 "A quality which inheres in a continuant." ; obo:IAO_0000412 obo:obi.owl , obo:pato.owl ; rdfs:label "physical object quality" . ### http://purl.obolibrary.org/obo/PATO_0001340 obo:PATO_0001340 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0001894 ; obo:IAO_0000115 "A biological sex quality inhering in an organism or a population with both male and female sexual organs in one individual." ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "hermaphrodite" . ### http://purl.obolibrary.org/obo/PATO_0001421 obo:PATO_0001421 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0000169 ; obo:IAO_0000111 "alive" ; obo:IAO_0000115 "A viability quality inhering in a bearer by virtue of the bearer's condition before death." ; obo:IAO_0000412 obo:obi.owl , obo:pato.owl ; rdfs:label "alive" . ### http://purl.obolibrary.org/obo/PATO_0001422 obo:PATO_0001422 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0000169 ; obo:IAO_0000111 "dead" ; obo:IAO_0000115 "A viability quality inhering in a bearer by virtue of the cessation of the bearer's life." ; obo:IAO_0000412 obo:obi.owl , obo:pato.owl ; rdfs:label "dead" . ### http://purl.obolibrary.org/obo/PATO_0001827 obo:PATO_0001827 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0001894 ; obo:IAO_0000115 "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of one sex and external sexual characteristics of the other sex." ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "pseudohermaphrodite" . ### http://purl.obolibrary.org/obo/PATO_0001828 obo:PATO_0001828 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0001827 ; obo:IAO_0000115 "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of male and external sexual characteristics of female." ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "male pseudohermaphrodite" . ### http://purl.obolibrary.org/obo/PATO_0001829 obo:PATO_0001829 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0001827 ; obo:IAO_0000115 "A biological sex quality inhering in an individual or a population by virtue of having internal reproductive organs of female and external sexual characteristics of male." ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "female pseudohermaphrodite" . ### http://purl.obolibrary.org/obo/PATO_0001894 obo:PATO_0001894 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0000047 ; obo:IAO_0000115 "An organismal quality inhering in a bearer by virtue of the bearer's physical expression of sexual characteristics." ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "phenotypic sex" . ### http://purl.obolibrary.org/obo/PATO_0001995 obo:PATO_0001995 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0001241 ; obo:IAO_0000111 "organismal quality" ; obo:IAO_0000115 "A quality that inheres in an entire organism or part of an organism." ; obo:IAO_0000412 obo:obi.owl , obo:pato.owl ; rdfs:label "organismal quality" . ### http://purl.obolibrary.org/obo/PATO_0002365 obo:PATO_0002365 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0000383 ; obo:IAO_0000115 "Female quality of having complete, unaltered reproductive organs" ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "intact female" . ### http://purl.obolibrary.org/obo/PATO_0002366 obo:PATO_0002366 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0000384 ; obo:IAO_0000115 "Male quality of having complete, unaltered reproductive organs." ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "intact male" . ### http://purl.obolibrary.org/obo/PATO_0002367 obo:PATO_0002367 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0000384 ; obo:IAO_0000115 "Male quality of being incapable to reproduce because of functional loss of the testicles from surgical removal or chemical means." ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "castrated male" . ### http://purl.obolibrary.org/obo/PATO_0040020 obo:PATO_0040020 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0000383 ; obo:IAO_0000115 "Female quality of being incapable to reproduce because of functional loss of the ovaries and/or uterus from surgical removal." ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "spayed female" . ### http://purl.obolibrary.org/obo/PATO_0040049 obo:PATO_0040049 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0001894 ; obo:IAO_0000115 "A biological sex quality inhering in an individual or a population who are otherwise male of a non-hermaphroditic species who has ambiguous or atypical congenital development of the reproductive system." ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "male with DSD" . ### http://purl.obolibrary.org/obo/PATO_0040050 obo:PATO_0040050 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0001894 ; obo:IAO_0000115 "A phenotypic sex quality inhering in a plant organism or a population of plants in which the flowers have two stamens." ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "diandrous" . ### http://purl.obolibrary.org/obo/PATO_0040051 obo:PATO_0040051 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0001894 ; obo:IAO_0000115 "A phenotypic sex quality inhering in a plant organism or a population of plants in which the flowers have only one stamen." ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "monandrous" . ### http://purl.obolibrary.org/obo/PATO_0040052 obo:PATO_0040052 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0070000 ; obo:IAO_0000115 "A sequential hermaphroditic quality whereby organisms start out as female and change to male at a later life stage." ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "protogynous" . ### http://purl.obolibrary.org/obo/PATO_0040053 obo:PATO_0040053 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0070000 ; obo:IAO_0000115 "A sequential hermaphroditic quality whereby organisms start out as male and change to female at a later life stage." ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "protandrous" . ### http://purl.obolibrary.org/obo/PATO_0040054 obo:PATO_0040054 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0040052 ; obo:IAO_0000115 "A protogynous quality whereby organisms start out as female and change to hermaphrodite at a later life stage." ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "protogynous hermaphroditism" . ### http://purl.obolibrary.org/obo/PATO_0040055 obo:PATO_0040055 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0040053 ; obo:IAO_0000115 "A protandrous quality whereby organisms start out as male and change to hermaphrodite at a later life stage." ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "protandrous hermaphroditism" . ### http://purl.obolibrary.org/obo/PATO_0040056 obo:PATO_0040056 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0001894 ; obo:IAO_0000115 "A biological sex quality inhering in an individual or a population who are otherwise female of a non-hermaphroditic species who has ambiguous or atypical congenital development of the reproductive system." ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "female with DSD" . ### http://purl.obolibrary.org/obo/PATO_0070000 obo:PATO_0070000 rdf:type owl:Class ; rdfs:subClassOf obo:PATO_0001340 ; obo:IAO_0000115 "A hermaphroditic quality that inheres in a population or organism where an organism changes is a different sexes during different life stages." ; obo:IAO_0000412 obo:foodon.owl , obo:pato.owl ; rdfs:label "sequential hermaphrodite" . ### http://purl.obolibrary.org/obo/RO_0002577 obo:RO_0002577 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000040 , [ owl:intersectionOf ( obo:BFO_0000040 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000110 ; owl:someValuesFrom obo:BFO_0000040 ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:BFO_0000040 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000110 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:BFO_0000040 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000111 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:BFO_0000040 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000166 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:BFO_0000040 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000185 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000185 ; owl:allValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:BFO_0000040 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000211 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:BFO_0000040 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002163 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; obo:IAO_0000115 "A material entity consisting of multiple components that are causally integrated." ; obo:IAO_0000116 "May be replaced by a BFO class, as discussed in http://www.jbiomedsem.com/content/4/1/43" ; obo:IAO_0000117 ; obo:IAO_0000119 "http://www.jbiomedsem.com/content/4/1/43" ; rdfs:comment """SCO cretor comment: RO defines the class “system” as a subclass of the “material entity” class. Nevertheless, a system is a fiat object, e.g. an object that is “delimited” according to the perspective of the stakeholder (Landgrebe and Smith 2022, p. 117,118). System delimitation determines the boundaries of the systems, but the stakeholder, however, does not create the system through this delimitation process (Landgrebe and Smith 2022, p. 117,118). As this class is extensively reused among ontologies within the OBO-Foundry context, we maintain its current hierarchical position. However, we recommend a revision of this class. There are two possible strategies to consider: 1) to reclassify this class as a subclass of “fiat object part” one or 2) to create a dedicated “fiat object” class that will be a subclass of “material entity” and the superclass for the “system” one (and related subclasses). We leave the discussion open with the intention of engaging with subject matter experts, planning that these modifications may be included in the next release of this resource. As the environment of a system corresponds to what has not been delimited as part of such a system, these considerations correspondingly also apply to the class “system environment” (at least regarding the system-system environment boundaries)."""@en , """SCO developer comment: Despite minor differences, SCO representation of systems and related architecture and composition is compatible with that of the System Core Ontology (Calhau et al., 2024). The system Core Ontology centers on socio-techno systems, primarily pointing to an intention/goal-directed representation of these systems. SCO representation, instead, adopts a more neutral modeling approach for complex systems, seeking to account for a wider range of systems. SCO is also more compact than the system Core Ontology. This is, however, adequate for the current purposes of SCO. We envision employing the system Core Ontology as a starting point to extend SCO representation of system architecture, situations, properties, and functions. We also envision possible alignments and reciprocal implementations between these two ontologies. Calhau, R. F., Prince Sales, T., Oliveira, Í., Kokkula, S., Ferreira Pires, L., Cameron, D., Guizzardi, G., & Almeida, J. P. A. (2024). A System Core Ontology for Capability Emergence Modeling. In H. A. Proper, L. Pufahl, D. Karastoyanova, M. Van Sinderen, & J. Moreira (A c. Di), Enterprise Design, Operations, and Computing (Vol. 14367, pp. 3–20). Springer Nature Switzerland. https://doi.org/10.1007/978-3-031-46587-1_1 Ubbiali, G. A., Borghini, A., & Lange, M. C. (2024). Ontologies for Sustainability: Theoretical Challenges. https://doi.org/10.31219/osf.io/z8uqr"""@en , """SCO developer comment: We envision discussions with subject matter experts regarding whether the current SCO representation of system-system component (and related environment) parthood is suitable or whether a proper parthood-based representation is more adequate. Insights for discussion may be found in Calhau et al. (2024) and Ubbiali et al. (2024). Calhau, R. F., Prince Sales, T., Oliveira, Í., Kokkula, S., Ferreira Pires, L., Cameron, D., Guizzardi, G., & Almeida, J. P. A. (2024). A System Core Ontology for Capability Emergence Modeling. In H. A. Proper, L. Pufahl, D. Karastoyanova, M. Van Sinderen, & J. Moreira (A c. Di), Enterprise Design, Operations, and Computing (Vol. 14367, pp. 3–20). Springer Nature Switzerland. https://doi.org/10.1007/978-3-031-46587-1_1 Ubbiali, G. A., Borghini, A., & Lange, M. C. (2024). Ontologies for Sustainability: Theoretical Challenges. https://doi.org/10.31219/osf.io/z8uqr"""@en ; rdfs:label "system" ; rdfs:seeAlso """SCO creator cited reference: Landgrebe, Jobst, and Barry Smith. 2022. Why Machines Will Never Rule the World: Artificial Intelligence without Fear. Taylor & Francis. 10.4324/9781003310105"""@en . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0002577 ; owl:annotatedProperty rdfs:comment ; owl:annotatedTarget """SCO developer comment: We envision discussions with subject matter experts regarding whether the current SCO representation of system-system component (and related environment) parthood is suitable or whether a proper parthood-based representation is more adequate. Insights for discussion may be found in Calhau et al. (2024) and Ubbiali et al. (2024). Calhau, R. F., Prince Sales, T., Oliveira, Í., Kokkula, S., Ferreira Pires, L., Cameron, D., Guizzardi, G., & Almeida, J. P. A. (2024). A System Core Ontology for Capability Emergence Modeling. In H. A. Proper, L. Pufahl, D. Karastoyanova, M. Van Sinderen, & J. Moreira (A c. Di), Enterprise Design, Operations, and Computing (Vol. 14367, pp. 3–20). Springer Nature Switzerland. https://doi.org/10.1007/978-3-031-46587-1_1 Ubbiali, G. A., Borghini, A., & Lange, M. C. (2024). Ontologies for Sustainability: Theoretical Challenges. https://doi.org/10.31219/osf.io/z8uqr"""@en ; rdfs:seeAlso "See also comments to https://www.w3id.org/sco/sco-u#SCO_0000056"@en ] . ### http://purl.obolibrary.org/obo/UBERON_0000061 obo:UBERON_0000061 rdf:type owl:Class ; rdfs:subClassOf obo:UBERON_0000465 ; obo:IAO_0000115 "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome." ; obo:IAO_0000412 obo:foodon.owl , obo:uberon.owl ; rdfs:comment """SuMSO developer comment: We envision that future implementations will provide axioms and classes to deepen and further clarify the relationship between anatomical structures and organisms. See the “killing” class for some insights with regard to living beings and corresponding carcasses and the “organism class” for comments."""@en ; rdfs:label "anatomical structure" . ### http://purl.obolibrary.org/obo/UBERON_0000465 obo:UBERON_0000465 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000040 ; obo:IAO_0000115 "Anatomical entity that has mass." ; obo:IAO_0000412 obo:foodon.owl , obo:uberon.owl ; rdfs:label "material anatomical entity" . ### http://purl.obolibrary.org/obo/UBERON_0000468 obo:UBERON_0000468 rdf:type owl:Class ; rdfs:subClassOf obo:UBERON_0010000 ; obo:IAO_0000115 "Anatomical structure that is an individual member of a species and consists of more than one cell." ; obo:IAO_0000412 obo:foodon.owl , obo:uberon.owl ; rdfs:label "multicellular organism" . ### http://purl.obolibrary.org/obo/UBERON_0003100 obo:UBERON_0003100 rdf:type owl:Class ; rdfs:subClassOf obo:UBERON_0000468 ; obo:IAO_0000115 "Gonochoristic organism that can produce female gametes." ; obo:IAO_0000412 obo:foodon.owl , obo:uberon.owl ; rdfs:label "female organism" . ### http://purl.obolibrary.org/obo/UBERON_0004529 obo:UBERON_0004529 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020910 ; obo:IAO_0000115 "A projection or outgrowth of tissue from a larger body or organ." ; obo:IAO_0000116 "should be declared disjoint from organ, but in some ontologies (e.g. ZFA), structures such as neural spines are classified as bones (and hence organs)" ; obo:IAO_0000412 obo:uberon.owl ; obo:UBPROP_0000001 "Anatomical structure that is a natural outgrowth, projection, or appendage. A process can be part of a bone, cartilage, or tissue.[AAO]" , "Anatomical structure that is a natural outgrowth, projection, or appendage. A process can be part of a bone, cartilage, tissue, fin, scale, etc.[TAO]" , "Anatomical structure that is a natural outgrowth, projection, or appendage. A process can be part of a bone, cartilage, tissue, fin, scale, etc.[VSAO]" ; dc:contributor , ; oboInOwl:hasBroadSynonym "anatomical process" , "process" ; oboInOwl:hasDbXref "AAO:0010278" , "FMA:67601" , "HAO:0000822" , "NCIT:C61549" , "TAO:0001834" , "VSAO:0000180" , "Wikipedia:Process_(anatomy)" , "XAO:0004020" , "galen:Ridge" ; oboInOwl:hasExactSynonym "processus" , "projection" ; oboInOwl:hasNarrowSynonym "flange" , "flanges" , "lamella" , "lamellae" , "lamina" , "laminae" , "organ process" , "papilla" , "process of organ" , "processes" , "projection" , "projections" , "ridge" , "ridges" , "shelf" , "shelves" ; oboInOwl:hasOBONamespace "uberon" ; oboInOwl:hasRelatedSynonym "anatomical protrusion" , "protrusion" , "spine" ; oboInOwl:id "UBERON:0004529" ; oboInOwl:inSubset , ; rdfs:label "anatomical projection" . ### http://purl.obolibrary.org/obo/UBERON_0006967 obo:UBERON_0006967 rdf:type owl:Class ; rdfs:subClassOf obo:UBERON_0006969 ; obo:IAO_0000115 "A pointed projection of the skin on the head of various animals, consisting of a covering of horn (keratin and other proteins) surrounding a core of living bone." ; obo:IAO_0000412 obo:uberon.owl ; oboInOwl:hasDbXref "GAID:1225" , "MESH:D006733" , "SCTID:69221006" , "Wikipedia:Horn_(anatomy)" ; oboInOwl:hasOBONamespace "uberon" ; oboInOwl:id "UBERON:0006967" ; oboInOwl:inSubset ; rdfs:label "horn" . ### http://purl.obolibrary.org/obo/UBERON_0006969 obo:UBERON_0006969 rdf:type owl:Class ; rdfs:subClassOf obo:UBERON_0004529 ; obo:IAO_0000115 "An anatomical projection that is part of and protrudes from the head." ; obo:IAO_0000116 "revisit after CARO2 appendage issue is sorted. Note that antennae are appendages that protrude from the head" ; obo:IAO_0000412 obo:uberon.owl ; oboInOwl:hasOBONamespace "uberon" ; oboInOwl:id "UBERON:0006969" ; rdfs:label "cranial appendage" . ### http://purl.obolibrary.org/obo/UBERON_0007023 obo:UBERON_0007023 rdf:type owl:Class ; rdfs:subClassOf obo:UBERON_0000468 ; obo:IAO_0000115 "A multicellular organism that existence_ends_with a post-juvenile adult stage and existence_starts_with a post-juvenile adult stage." ; obo:IAO_0000412 obo:foodon.owl , obo:uberon.owl ; rdfs:label "adult organism" . ### http://purl.obolibrary.org/obo/UBERON_0008979 obo:UBERON_0008979 rdf:type owl:Class ; rdfs:subClassOf obo:UBERON_0000468 , [ owl:intersectionOf ( obo:UBERON_0000468 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000086 ; owl:someValuesFrom obo:PATO_0001422 ] ) ; rdf:type owl:Class ] ; obo:IAO_0000115 "A body of a multi-cellular organism that is no longer living." ; obo:IAO_0000117 "Gregory Harhay"@en ; obo:IAO_0000412 obo:foodon.owl , obo:uberon.owl ; oboInOwl:hasExactSynonym "cadaver"@en , "corpse"@en , "dead body"@en ; rdfs:comment """SuMSO developer comment: FoodOn refers to carcasses as animals. However, there is no reference to “dead” quality or other features to disambiguate. See http://purl.obolibrary.org/obo/FOODON_03411564. There is only a mention in a comment to the “animal carcass” class. We consider implementations as required. Here, we refer to carcasses as organism materials (as FoodOn does for some “carcass” classes) as well as anatomical structures (as FoodOn does). Further implementations are required to extend this representation, especially with regard to the relationship between animals, carcasses and death/life."""@en ; rdfs:label "carcass" . ### http://purl.obolibrary.org/obo/UBERON_0010000 obo:UBERON_0010000 rdf:type owl:Class ; rdfs:subClassOf obo:UBERON_0000061 ; obo:IAO_0000115 "An anatomical structure that has more than one cell as a part." ; obo:IAO_0000412 obo:foodon.owl , obo:uberon.owl ; oboInOwl:hasExactSynonym "multicellular structure" ; rdfs:label "multicellular anatomical structure" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:UBERON_0010000 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "An anatomical structure that has more than one cell as a part." ; oboInOwl:hasDbXref "CARO:0010000" ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:UBERON_0010000 ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedTarget "multicellular structure" ; oboInOwl:hasDbXref "FBbt:00100313" ] . ### http://purl.obolibrary.org/obo/VO_0000299 obo:VO_0000299 rdf:type owl:Class ; rdfs:subClassOf obo:OBI_0000245 , [ owl:intersectionOf ( obo:OBI_0000245 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; obo:IAO_0000115 "A legal organization that represents an association of people with a specific objective." ; obo:IAO_0000117 "YH" ; obo:IAO_0000119 "https://en.wikipedia.org/wiki/Company" ; obo:IAO_0000412 obo:vo.owl ; oboInOwl:inSubset "material entity" ; rdfs:comment """SuMSO developer comment: We envision improving this definition. Diiscussions with subject matter expert are required to revise it."""@en ; rdfs:label "company" ; rdfs:seeAlso """SuMSO developer: see also http://purl.obolibrary.org/obo/NCIT_C54131"""@en . ### http://purl.unep.org/sdg/SDGIO_00000014 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000015 ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "A process which is causally within or downstream of another process whose direct or indirect effects cause one or more entities to realise one or more of their dispositions." ; obo:IAO_0000116 "The semantics of this class are being discussed and are very likely to change. Obsolescence is possible." , """This class may be replaced by a class in EXO, pending a clarification on the scope of its meaning. Right now it is essentially the same as 'interaction'. https://github.com/SDG-InterfaceOntology/sdgio/issues/21""" ; "https://uneplive.unep.org/community/discussion/view/23253/exposure" ; "A process during which an entity is impacted by some agent or preceeding event." ; oboInOwl:hasBroadSynonym "exposure" ; rdfs:comment "Consider that when \"E died of exposure to P\", E died as an outcome of the processes which were initiated by E's participation in P, in which E's dispositions to react to P (or its parts or participants) were realised." ; rdfs:label "exposure process"@en . ### http://purl.unep.org/sdg/SDGIO_00000024 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000016 , , [ owl:intersectionOf ( obo:BFO_0000016 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000054 ; owl:someValuesFrom ] ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "A disposition of an entity to undergo undesirable change in response to some exposure."@en ; obo:IAO_0000116 "Note that the definition endorsed by the UN General Assembly references the conditions that increase susceptibility to the impacts of hazards, rather than the susceptibilities themselves. The links between vulnerability, exposure, risk, and hazard are being developed. This definition will be updated accordingly. The definition currently used could be used for 'susceptible' too. Vulnerable has negative connotations."@en ; terms:source """SuMSO definition sources: 1-55963-856-7 https://pure.iiasa.ac.at/id/eprint/26/1/RP-73-003.pdf https://pure.iiasa.ac.at/id/eprint/13667/?template=default_internal"""@en ; "The conditions determined by physical, social, economic and environmental factors or processes which increase the susceptibility of an individual, a community, assets or systems to the impacts of hazards." ; rdfs:comment """SuMSO developer comment: Currently, we focused on complex systems but this class may be refer directly to systems. Once more, this will be cover into SCO implementations."""@en , """SuMSO developer comment: Further classes are needed to represent sensitivity and perturbations. Implementations will cover these aspects. Revisions will be carried out in accordance with SCO implementations regarding system behaviors."""@en , """SuMSO developer comment: This term must be included within SCO."""@en , """SuMSO developer comment: We decided to include the SDGIO class as judged adequate to represent system vulnerability. We, however, decided to provide an alternative definition, more focused on complex systems as considered useful in the context of sustainability and complexity."""@en ; rdfs:label "vulnerability"@en ; rdfs:seeAlso """SuMSO developer suggestions: http://humanbehaviourchange.org/ontology/BCIO_015160 http://aims.fao.org/aos/agrovoc/c_306b9cc8 http://purl.unep.org/sdg/SDGIO_00000020 and subclasses http://purl.unep.org/sdg/SDGIO_00000014 and subclasses https://github.com/CTDbase/exposure-ontology https://github.com/EnvironmentOntology/environmental-exposure-ontology"""@en , """SuMSO developer suggestions: http://purl.unep.org/sdg/SDGIO_00000067 http://purl.unep.org/sdg/SDGIO_00000020 and subclasses http://purl.unep.org/sdg/SDGIO_00000014 and subclasses http://purl.obolibrary.org/obo/ID_0000015 http://purl.bioontology.org/ontology/MESH/D055500 http://www.eionet.europa.eu/gemet/concept/15275 http://aims.fao.org/aos/agrovoc/c_1374480530924 http://data.loterre.fr/ark:/67375/BLH-RNSMBMMC-V http://opendata.inrae.fr/thesaurusINRAE/c_9065"""@en ; skos:definition """SuMSO definition: A disposition whose realization leads a complex system to express sensitivity over resilience to a certain perturbation to which it is exposed."""@en . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty ; owl:annotatedTarget "The conditions determined by physical, social, economic and environmental factors or processes which increase the susceptibility of an individual, a community, assets or systems to the impacts of hazards." ; obo:IAO_0000119 "http://www.preventionweb.net/files/50683_oiewgreportenglish.pdf" ] . ### http://purl.unep.org/sdg/SDGIO_00010021 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000016 , , [ owl:intersectionOf ( obo:BFO_0000016 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "A disposition of an entity to recover its previous composition, qualities, and functionality following some perturbation."@en ; terms:source """SuMSO definition sources: 1-55963-856-7 https://pure.iiasa.ac.at/id/eprint/26/1/RP-73-003.pdf https://pure.iiasa.ac.at/id/eprint/13667/?template=default_internal"""@en ; "https://uneplive.unep.org/community/discussion/view/23243/resilience" ; rdfs:comment """SuMSO developer comment: Currently, we focused on complex systems but this class may be refer directly to systems. Once more, this will be cover into SCO implementations."""@en , """SuMSO developer comment: Further classes are needed to represent system states and perturbations. Implementations will cover these aspects. Revisions will be carried out in accordance with SCO implementations regarding system behaviors."""@en , """SuMSO developer comment: We decided to include the SDGIO class as judged adequate to represent system resilience. We, however, decided to provide an alternative definition, more focused on complex systems as considered useful in the context of sustainability and complexity."""@en , "This disposition is distinct from robustness, which pertains to an entity's ability to resist change when encountering perturbing forces."@en ; rdfs:label "resilience"@en ; skos:definition """SuMSO definition: A disposition whose realization leads a complex system to persist in its stable state of equilibrium in response to a perturbation before moving to a different system state."""@en . ### http://www.bioassayontology.org/bao#BAO_0000605 rdf:type owl:Class ; rdfs:subClassOf obo:NCBITaxon_2759 ; obo:IAO_0000115 "They are living organisms which derive their energy from photosynthesis, with the exception of parasitic plants. Plants include herbs, shrubs, trees, grasses, vines, etc." ; obo:IAO_0000412 ; rdfs:label "plant" . ### http://www.ontologyrepository.com/CommonCoreOntologies/DecreaseOfDependentContinuant CommonCoreOntologies:DecreaseOfDependentContinuant rdf:type owl:Class ; rdfs:subClassOf ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Decrease of Dependent Continuant"@en ; skos:definition "A Change in which some Independent Continuant has a decrease in the level of some Dependent Continuant that it bears."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/DecreaseOfDisposition CommonCoreOntologies:DecreaseOfDisposition rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:DecreaseOfRealizableEntity ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Decrease of Disposition"@en ; skos:definition "A Decrease of Realizable Entity in which some Independent Continuant has a decrease of some Disposition it bears."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/DecreaseOfFunction CommonCoreOntologies:DecreaseOfFunction rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:DecreaseOfDisposition ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Decrease of Function"@en ; skos:definition "A Decrease of Disposition in which some Independent Continuant has a decrease of some Function that it bears."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/DecreaseOfGenericallyDependentContinuant CommonCoreOntologies:DecreaseOfGenericallyDependentContinuant rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:DecreaseOfDependentContinuant ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:comment "For the most part Generically Dependent Continuants do not inhere in their bearers over some continuous scale. The primary exception is religion and this class allows annotation of those cases where an Agent is described as becoming less religious. Other cases would include the decrease of an organization's bearing of some objective."@en ; rdfs:label "Decrease of Generically Dependent Continuant"@en ; skos:definition "A Decrease of Dependent Continuant in which some Independent Continuant has a decrease in the level of a Generically Dependent Continuant that it bears."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/DecreaseOfQuality CommonCoreOntologies:DecreaseOfQuality rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:DecreaseOfSpecificallyDependentContinuant ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Decrease of Quality"@en ; skos:definition "A Decrease of Specifically Dependent Continuant in which some Independent Continuant has a decrease of some Quality that it bears."@en ; skos:example "Weight Loss, Decreasing Temperature, decreasing color intensity, loss of structural integrity" . ### http://www.ontologyrepository.com/CommonCoreOntologies/DecreaseOfRealizableEntity CommonCoreOntologies:DecreaseOfRealizableEntity rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:DecreaseOfSpecificallyDependentContinuant ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Decrease of Realizable Entity"@en ; skos:definition "A Decrease of Specifically Dependent Continuant in which some Independent Continuant has a decrease of some Realizable Entity that it bears."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/DecreaseOfRole CommonCoreOntologies:DecreaseOfRole rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:DecreaseOfRealizableEntity ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Decrease of Role"@en ; skos:definition "A Decrease of Realizable Entity in which some Independent Continuant has a decrease of some Role that it bears."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/DecreaseOfSpecificallyDependentContinuant CommonCoreOntologies:DecreaseOfSpecificallyDependentContinuant rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:DecreaseOfDependentContinuant ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Decrease of Specifically Dependent Continuant"@en ; skos:definition "A Decrease of Dependent Continuant in which some Independent Continuant has a decrease in some Specifically Dependent Continuant that it bears."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/DirectiveInformationContentEntity CommonCoreOntologies:DirectiveInformationContentEntity rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( CommonCoreOntologies:InformationContentEntity [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:prescribes ; owl:someValuesFrom obo:BFO_0000001 ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf CommonCoreOntologies:InformationContentEntity ; CommonCoreOntologies:alternative_label "Directive ICE"@en ; CommonCoreOntologies:definition "An Information Content Entity that consists of a set of propositions or images (as in the case of a blueprint) that prescribe some Entity."@en ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/InformationEntityOntology"^^xsd:anyURI ; rdfs:comment """SuMSO developer comment: Both CCO and IAO cover a “directive information (content) entity” class. Despite being in line, the class definitions present slight differences. For reasons of practicality, we assumed that the two classes correspond and are equivalent. Future works will require more discussion regarding the alignment of the two classes. http://purl.obolibrary.org/obo/IAO_0000033 http://www.ontologyrepository.com/CommonCoreOntologies/DirectiveInformationContentEntity"""@en ; rdfs:label "Directive Information Content Entity"@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/GainOfDependentContinuant CommonCoreOntologies:GainOfDependentContinuant rdf:type owl:Class ; rdfs:subClassOf ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Gain of Dependent Continuant"@en ; skos:definition "A Change in which an Independent Continuant becomes the bearer or carrier of some Dependent Continuant."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/GainOfDisposition CommonCoreOntologies:GainOfDisposition rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:GainOfRealizableEntity , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000057 ; owl:someValuesFrom [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000196 ; owl:someValuesFrom obo:BFO_0000016 ] ) ; rdf:type owl:Class ] ] ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:comment "This class should be used to demarcate the start of the temporal interval (through the BFO 'occupies temporal region' property) that the Entity bears the Disposition."@en ; rdfs:label "Gain of Disposition"@en ; skos:definition "A Gain of Realizable Entity in which some Independent Continuant becomes the bearer of some Disposition."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/GainOfFunction CommonCoreOntologies:GainOfFunction rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:GainOfDisposition , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000057 ; owl:someValuesFrom [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000196 ; owl:someValuesFrom obo:BFO_0000034 ] ) ; rdf:type owl:Class ] ] ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:comment "This class should be used to demarcate the start of the temporal interval (through the BFO 'occupies temporal region' property) that the Entity bears the Function."@en ; rdfs:label "Gain of Function"@en ; skos:definition "A Gain of Disposition in which some Independent Continuant becomes the bearer of some Function."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/GainOfGenericallyDependentContinuant CommonCoreOntologies:GainOfGenericallyDependentContinuant rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:GainOfDependentContinuant , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000057 ; owl:someValuesFrom [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000101 ; owl:someValuesFrom obo:BFO_0000031 ] ) ; rdf:type owl:Class ] ] ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Gain of Generically Dependent Continuant"@en ; skos:definition "A Gain of Dependent Continuant wherein some Independent Continuant becomes the carrier of some Generically Dependent Continuant."@en ; skos:example "A Person forms a Plan, A Person is initiated into a Religion, A photgraphic image is produced." . ### http://www.ontologyrepository.com/CommonCoreOntologies/GainOfQuality CommonCoreOntologies:GainOfQuality rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:GainOfSpecificallyDependentContinuant , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000057 ; owl:someValuesFrom [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000196 ; owl:someValuesFrom obo:BFO_0000019 ] ) ; rdf:type owl:Class ] ] ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Gain of Quality"@en ; skos:definition "A Gain of Specifically Dependent Continuant in which an Independent Continuant becomes the bearer of some Quality."@en ; skos:example "A person becoming pregnant." . ### http://www.ontologyrepository.com/CommonCoreOntologies/GainOfRealizableEntity CommonCoreOntologies:GainOfRealizableEntity rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:GainOfSpecificallyDependentContinuant , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000057 ; owl:someValuesFrom [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000196 ; owl:someValuesFrom obo:BFO_0000017 ] ) ; rdf:type owl:Class ] ] ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Gain of Realizable Entity"@en ; skos:definition "A Gain of Specifically Dependent Continuant in which some Independent Continuant becomes the bearer of some Realizable Entity."@en ; skos:example "An informant becomes unreliable (disposition), A person begins to speak French (function), a person becomes a welder (role)." . ### http://www.ontologyrepository.com/CommonCoreOntologies/GainOfRole CommonCoreOntologies:GainOfRole rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:GainOfRealizableEntity , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000057 ; owl:someValuesFrom [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000196 ; owl:someValuesFrom obo:BFO_0000023 ] ) ; rdf:type owl:Class ] ] ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:comment "This class should be used to demarcate the start of the temporal interval (through the occurs_on property) that the Entity bears the Role."@en ; rdfs:label "Gain of Role"@en ; skos:definition "A Gain of Realizable Entity in which some Independent Continuant becomes bearer of some Role."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/GainOfSpecificallyDependentContinuant CommonCoreOntologies:GainOfSpecificallyDependentContinuant rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:GainOfDependentContinuant , [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000057 ; owl:someValuesFrom [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000196 ; owl:someValuesFrom obo:BFO_0000020 ] ) ; rdf:type owl:Class ] ] ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Gain of Specifically Dependent Continuant"@en ; skos:definition "A Gain of Dependent Continuant in which some Independent Continuant becomes the bearer of some Specifically Dependent Continuant."@en ; skos:example "A Person becomes pregnant (gain of quality), A person becomes forgetful (gain of disposition), A vehicle becomes amphibious (gain of function), A Person becomes a Database Administrator (gain of role)." . ### http://www.ontologyrepository.com/CommonCoreOntologies/IncreaseOfDependentContinuant CommonCoreOntologies:IncreaseOfDependentContinuant rdf:type owl:Class ; rdfs:subClassOf ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Increase of Dependent Continuant"@en ; skos:definition "A Change in which some Independent Continuant has an increase in the level of some Dependent Continuant that it bears."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/IncreaseOfDisposition CommonCoreOntologies:IncreaseOfDisposition rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:IncreaseOfRealizableEntity ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Increase of Disposition"@en ; skos:definition "An Increase of Realizable Entity in which some Independent Continuant has an increase of some Disposition that it bears."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/IncreaseOfFunction CommonCoreOntologies:IncreaseOfFunction rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:IncreaseOfDisposition ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Increase of Function"@en ; skos:definition "An Increase of Disposition in which some Independent Continuant has an increase of some Function that it bears."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/IncreaseOfGenericallyDependentContinuant CommonCoreOntologies:IncreaseOfGenericallyDependentContinuant rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:IncreaseOfDependentContinuant ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Increase of Generically Dependent Continuant"@en ; skos:definition "An Increase of Dependent Continuant in which some Independent Continuant has an increase of some Generically Dependent Continuant that it bears."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/IncreaseOfQuality CommonCoreOntologies:IncreaseOfQuality rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:IncreaseOfSpecificallyDependentContinuant ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Increase of Quality"@en ; skos:definition "An Increase of Specifically Dependent Continuant in which some Indpendent Continuant has an increase of some Quality that it bears."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/IncreaseOfRealizableEntity CommonCoreOntologies:IncreaseOfRealizableEntity rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:IncreaseOfSpecificallyDependentContinuant ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Increase of Realizable Entity"@en ; skos:definition "An Increase of Specifically Dependent Continuant in which some Independent Continuant has an increase of some Realizable Entity that it bears."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/IncreaseOfRole CommonCoreOntologies:IncreaseOfRole rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:IncreaseOfRealizableEntity ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Increase of Role"@en ; skos:definition "An Increase of Realizable Entity in which some Independent Continuant has an increase of some Role that it bears."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/IncreaseOfSpecificallyDependentContinuant CommonCoreOntologies:IncreaseOfSpecificallyDependentContinuant rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:IncreaseOfDependentContinuant ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Increase of Specifically Dependent Continuant"@en ; skos:definition "An Increase of Dependent Continuant in which some Independent Continuant has an increase of some Specifically Dependent Continuant that it bears."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/InformationContentEntity CommonCoreOntologies:InformationContentEntity rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:BFO_0000031 [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_about ; owl:someValuesFrom obo:BFO_0000001 ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:BFO_0000031 ; CommonCoreOntologies:alternative_label "ICE"@en ; CommonCoreOntologies:definition "A Generically Dependent Continuant that generically depends on some Information Bearing Entity and stands in relation of aboutness to some Entity."@en ; CommonCoreOntologies:definition_source "http://purl.obolibrary.org/obo/IAO_0000030" ; CommonCoreOntologies:elucidation "Information Content Entity is here intended to be a class of Entities whose instances are the informational content of Information Bearing Entities. For example, three instances of information bearers -- such as a bar chart, color-coded map, and a written report -- each of which lists the GDP of Countries for the year 2010 are each different carriers of the same information content. It is this content that is generically dependent upon its carrier. This treatment of Informational Content Entity (cf. the Information Artifact Ontology) leads to a principle of subtyping based upon the relationship that ICE's have with the Entity they are about rather than characteristics such as format, language, measurement scale, or media. The latter are treated here as being Qualities of bearers."@en ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/InformationEntityOntology"^^xsd:anyURI ; rdfs:comment """SCO developer comment: Currently, SCO-B reuses the representation of information that belongs to IAO/CCO. Nevertheless, debates are ongoing on whether information may be better represented through a type-token relationship within a multi-level type hierarchy. See the paper cited at the end of the comment. We envision discussions with subject matter experts from both BFO and UFO communities regarding this point. Weigand, H. (2025). Generic Ontological Dependence⋆. https://www.utwente.nl/en/eemcs/vmbo2025/papers/vmbo-2025-paper-4-2.pdf"""@en , """SCO developer comment: SCO-B does not currently cover a class for information bearing entity. We directly refer ICE subclasses to corresponding information bearing entities."""@en , """SuMSO creator comment: Extending SCO, SuMSO V1.0.0 already covers the class “information content entity” from the Common Core Ontologies (CCO) Suite. IAO and CCO classes correspond. Thus, SuMSO V1.0.0 only imports IAO “information content entity” subclasses under the CCO one. See SeeAlso annotation to refer to the IAO class. We envision harmonization of CCO and IAO classes and subclasses."""@en ; rdfs:label "Information Content Entity"@en ; rdfs:seeAlso """SuMSO note: IAO “information content entity” class: http://purl.obolibrary.org/obo/IAO_0000030""" . ### http://www.ontologyrepository.com/CommonCoreOntologies/LossOfDependentContinuant CommonCoreOntologies:LossOfDependentContinuant rdf:type owl:Class ; rdfs:subClassOf ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Loss of Dependent Continuant"@en ; skos:definition "A Change in which some Independent Continuant ceases to be the bearer or carrier of some Dependent Continuant."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/LossOfDisposition CommonCoreOntologies:LossOfDisposition rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:LossOfRealizableEntity ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Loss of Disposition"@en ; skos:definition "A Loss of Realizable Entity in which some Independent Continuant ceases to be the bearer of some Disposition."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/LossOfFunction CommonCoreOntologies:LossOfFunction rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:LossOfDisposition ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Loss of Function"@en ; skos:definition "A Loss of Disposition in which some Independent Continuant ceases to be the bearer of some Function."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/LossOfGenericallyDependentContinuant CommonCoreOntologies:LossOfGenericallyDependentContinuant rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:LossOfDependentContinuant ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Loss of Generically Dependent Continuant"@en ; skos:definition "A Loss of Dependent Continuant in which some Independent Continuant ceases to be the carrier of some Generically Dependent Continuant."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/LossOfQuality CommonCoreOntologies:LossOfQuality rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:LossOfSpecificallyDependentContinuant ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Loss of Quality"@en ; skos:definition "A Loss of Specifically Dependent Continuant in which some Independent Continuant ceases to be the bearer of some Quality."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/LossOfRealizableEntity CommonCoreOntologies:LossOfRealizableEntity rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:LossOfSpecificallyDependentContinuant ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Loss of Realizable Entity"@en ; skos:definition "A Loss of Specifically Dependent Continuant in which some Independent Continuant ceases to be the bearer of some Realizable Entity."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/LossOfRole CommonCoreOntologies:LossOfRole rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:LossOfRealizableEntity ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Loss of Role"@en ; skos:definition "A Loss of Realizable Entity in which some Independent Continuant ceases to be the bearer of some Role."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/LossOfSpecificallyDependentContinuant CommonCoreOntologies:LossOfSpecificallyDependentContinuant rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:LossOfDependentContinuant ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology"^^xsd:anyURI ; rdfs:label "Loss of Specifically Dependent Continuant"@en ; skos:definition "A Loss of Dependent Continuant in which some Independent Continuant ceases to be the bearer of some Specifically Dependent Continuant."@en . ### http://www.ontologyrepository.com/CommonCoreOntologies/RepresentationalInformationContentEntity CommonCoreOntologies:RepresentationalInformationContentEntity rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( CommonCoreOntologies:InformationContentEntity [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:represents ; owl:someValuesFrom obo:BFO_0000001 ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf CommonCoreOntologies:InformationContentEntity ; owl:disjointWith , ; CommonCoreOntologies:definition "An Information Content Entity that represents some Entity."@en ; CommonCoreOntologies:example_of_usage "the content of a court transcript represents a courtroom proceeding" , "the content of a photograph of the Statue of Liberty represents the Statue of Liberty" , "the content of a video of a sporting event represents that sporting event" ; CommonCoreOntologies:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/InformationEntityOntology"^^xsd:anyURI ; rdfs:label "Representational Information Content Entity"@en . ### http://www.w3.org/2002/07/owl#Thing owl:Thing rdf:type owl:Class . ### https://spec.industrialontologies.org/ontology/core/meta/AnnotationVocabulary/MaturityLevel AnnotationVocabulary:MaturityLevel rdf:type owl:Class ; rdfs:label "maturity level"@en-us ; skos:definition "classifier used to specify the state of a resource in its development process"@en-us . ### https://w3id.org/sumso#SuMSO_0000001 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:comment """Currently, SuMSO refers to meat systems as covering different components, including humans, cows, manure, pieces of meat, and hides. Following SCO, meat system components present perspectives. Nevertheless, we may want to restrict perspectives to living beings. A possible option may be the exclusion of the following axioms, in order to remove the necessary condition of having a perspective from “meat systems component” class. 'system component' and ('has disposition' some perspective) 'system component' and ('is carrier of' some 'perspective information content entity') We refrain from proceeding as such, choosing solely to not establish corresponding \"perspective\" classes for meat system components to which a perspective is not generally recognized. Among components to which a perspective is generally recognized, we currently created corresponding “perspective\" class only for those we primarily focused on in developing this ontology. We envision discussions with subject matter experts."""@en ; rdfs:label "meat system component"@en ; skos:definition "A food system component that belongs to a meat system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000002 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "meat system stakeholder"@en ; skos:definition "A meat system component with a stakeholder role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000003 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "See the comment under the ontology header for details regarding the meaning of the term “meat”, currently covered by SuMSO."@en ; rdfs:label "meat system"@it ; skos:definition "A food system that pertains to meat, to some extent."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000004 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment """Here, the term “food” is used genuinely in a broad and over-comprehensive sense. To delve more into the meanings of “food”, we refer to Borghini et al. (2021) and Borghini and Piras (2020,2021). Borghini, A., Piras, N., & Serini, B. (2021). From philosophy to ontology: Rethinking food concepts. In CEUR Workshop Proceedings. JOWO Joint Ontology Workshops Episode VII. CEUR-WS. https://air.unimi.it/retrieve/handle/2434/897444/1953096/paper6-IFOW.pdf Borghini, A., & Piras, N. (2020). Food and Foods. Toward a Definition. Rivista Italiana Di Filosofia Del Linguaggio. https://doi.org/10.4396/SFL2019ES06 Borghini, Andrea, & Piras, N. (2021). On Interpreting Something as Food. Food Ethics, 6(1), 1. https://doi.org/10.1007/s41055-020-00082-5"""@en ; rdfs:label "food system"@en ; skos:definition "A complex system that pertains to food, to some extent."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000005 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "meat system agent"@en ; skos:definition "A meat system component that is an agent in an interaction among meat system components or in an interaction between meat system components and meat system environment components."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000006 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Class ; owl:unionOf ( obo:OBI_0000245 obo:OBI_0100026 ) ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "meat system actor"@en ; rdfs:seeAlso "https://spec.industrialontologies.org/ontology/core/Core/Supplier" ; skos:definition "An organism or organization that participates in a meat supply chain activity."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000007 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "meat system stakeholder perspective"@en ; skos:definition "A food system stakeholder perspective that is bearered by a meat system stakeholder."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000008 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:label "meat aggregator"@en ; skos:definition "An aggregator with a meat aggregator role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000009 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; owl:disjointWith ; rdfs:label "verifier"@en ; skos:definition "A human with a verifier role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000010 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000137 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "meat system boundary"@en ; skos:definition "A food system boundary of a meat system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000011 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "meat system spatial region"@en ; skos:definition "A food system spatial region of a meat system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000012 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000178 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002163 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002163 ; owl:allValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "meat system environment"@en ; skos:definition "A food system environment that surrounds and is distinct and disjoint from a meat system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000013 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000167 ; owl:minQualifiedCardinality "2"^^xsd:nonNegativeInteger ; owl:onClass ] ) ; rdf:type owl:Class ] ; owl:disjointWith , ; rdfs:comment "Future implementations will complement meat supply chain activities and interactions, that SuMSO currently covers, with the corresponding ones that pertain to related companies."@en ; rdfs:label "interaction among meat system components"@en ; skos:definition "An interaction among food system components that occurs among at least two meat system components of a meat system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000014 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000167 ; owl:minQualifiedCardinality "2"^^xsd:nonNegativeInteger ; owl:onClass ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:label "interaction among meat system environment components"@en ; skos:definition "An interaction among food system environment components that occurs among at least two meat system environment components."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000015 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000167 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000167 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] ; rdfs:label "interaction between meat system components and meat system environment components"@en ; skos:definition "An interaction between food system components and food system environment components that occurs between at least one meat system component and one meat system environment component where the latter belongs to the meat system environment of the meat system to which the meat system component belongs."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000016 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000184 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000184 ; owl:allValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; oboInOwl:hasDefinition "The food system history of a meat system."@en ; rdfs:comment "According to SCO implementations, we will expand the representation of the history and development of a meat system."@en ; rdfs:label "meat system history"@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000017 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "meat system environment agent"@en ; skos:definition "A meat system environment component that is an agent in an interaction among meat system environment components or in an interaction between meat system components and meat system environment components."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000018 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000178 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002163 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002163 ; owl:allValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "food system environment"@en ; skos:definition "A complex system environment that surrounds and is distinct and disjoint from a food system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000019 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "meat system environment component"@en ; skos:definition "A food system evironment component that belongs to the food system environment of a meat system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000020 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:comment "The class certifier is too general and broad. Not all verifiers may belong to meat systems. Thus, we include this class to restrict the focus on those who do so. We opted for this solution for reasons of practicality. Future implementations will deprecate this class and include the specific ones."@en ; rdfs:label "meat supply chain certifier"@en ; skos:definition "A certifier with a meat supply chain cerifier role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000021 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:VO_0000299 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:VO_0000299 , [ owl:intersectionOf ( obo:VO_0000299 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000172 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:label "processor company"@en ; skos:definition "A company with a processor role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000022 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000137 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "food system boundary"@en ; skos:definition "A complex system boundary of a food system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000023 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "food system spatial region"@en ; skos:definition "A complex system spatial region of a food system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000024 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:comment """Currently, SuMSO refers to food systems as covering different components. Following SCO, meat system components present perspectives. Nevertheless, we may want to restrict perspectives to living beings. A possible option may be the exclusion of the following axioms, in order to remove the necessary condition of having a perspective from “food systems component” class. 'system component' and ('has disposition' some perspective) 'system component' and ('is carrier of' some 'perspective information content entity') we refrain from proceeding as such, choosing solely to not establish corresponding \"perspective\" classes for food system components which are generally recognized as non-living entities. We envision discussions with subject matter experts."""@en ; rdfs:label "food system component"@en ; skos:definition "A complex system component that belongs to a food system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000025 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "food system agent"@en ; skos:definition "A food system component that is an agent in an interaction among food system components or in an interaction between food system components and food system environment components."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000026 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "food system stakeholder"@en ; skos:definition "A food system component with a stakeholder role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000027 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000167 ; owl:minQualifiedCardinality "2"^^xsd:nonNegativeInteger ; owl:onClass ] ) ; rdf:type owl:Class ] ; owl:disjointWith , ; rdfs:label "interaction among food system components"@en ; skos:definition "An interaction among complex system components that occurs among at least two food system components of a food system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000028 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000167 ; owl:minQualifiedCardinality "2"^^xsd:nonNegativeInteger ; owl:onClass ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:label "interaction among food system environment components"@en ; skos:definition "An interaction among complex system environment components that occurs among at least two food system environment components."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000029 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000167 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000167 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] ; rdfs:label "interaction between food system components and food system environment components"@en ; skos:definition "An interaction between complex system components and complex system environment components that occurs between at least one food system component and one food system environment component where the latter belongs to the food system environment of the food system to which the food system component belongs."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000030 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000057 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000117 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "food system development"@en ; skos:definition "The complex system development of a food system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000031 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "food system environment component"@en ; skos:definition "A complex system evironment component that belongs to the complex system environment of a food system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000032 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "food system environment agent"@en ; skos:definition "A food system environment component that is an agent in an interaction among food system environment components or in an interaction between food system components and food system environment components."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000033 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000057 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000117 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "According to SCO implementations, we will expand the representation of the history and development of a meat system."@en ; rdfs:label "meat system development"@en ; skos:definition "The food system development of a meat system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000034 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000059 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_subject_of ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:label "food system environment component perspective"@en ; skos:definition "A perspective that is bearered by a food system environment component."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000035 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000059 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_subject_of ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "food system stakeholder perspective"@en ; skos:definition "A stakeholder perspective that is bearered by a food system stakeholder."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000036 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Class ; owl:unionOf ( obo:OBI_0000245 obo:OBI_0100026 ) ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:comment "A possible generic “complex system actor” class can be added as necessary."@en , "SuMSO refers to this term in its broad sense, indicating any organism or organization that participate in food supply chain activities. This, however, does not mean that actors have an active role in the activities in which they participate. For discussion on agency in activities see comments under the “complex system activity” class."@en ; rdfs:label "food system actor"@en ; rdfs:seeAlso "https://spec.industrialontologies.org/ontology/core/Core/Supplier" ; skos:definition "An organism or organization that participates in a food supply chain activity."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000037 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000184 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000184 ; owl:allValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "food system history"@en ; skos:definition "The complex system history of a food system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000038 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000059 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_subject_of ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "food system component perspective"@en ; skos:definition "A perspective that is bearered by a food system component."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000039 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; owl:disjointWith ; rdfs:label "meat system component perspective"@en ; rdfs:seeAlso "See also the comment under the \"meat system component\" class."@en ; skos:definition "A food system component perspective that is bearered by a meat system component."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000040 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "meat system environment component perspective"@en ; skos:definition "A food system environment component perspective that is bearered by a meat system environment component."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000041 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , , , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:comment "We use this class to group workers that belong to meat systems."@en ; rdfs:label "meat system worker"@en ; skos:definition "A worker that is part of a meat system and engages in at least one meat supply chain activitiy.."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000042 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000172 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002584 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:label "slaughterer company"@en ; skos:definition "A meat processor company with a slaughterer role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000043 rdf:type owl:Class ; rdfs:subClassOf obo:OBI_0000011 , [ owl:intersectionOf ( obo:OBI_0000011 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000117 ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] ; rdfs:comment """Currently, SuMSO hierarchically position “activity” classes as subclasses of the “planned process” one. It also describes an activity having interactions as occurrent parts (at least one). Activities can equally have other activities as occurrent parts (sub-activities). The position of the class in the hierarchy and the definition require revision. We envision having discussions with subject matter experts about whether an activity is not necessarily planned. We also plan to discuss if an activity requires to have at least two interactions as occurrent parts, to exist or if one is enough. Similarly, we aim to converse regarding the possibility of introducing the term “action”. Our genuine understanding is that activities have actions as occurrent parts that have interactions as occurrent parts."""@en , "Currently, SuMSO reuse classes addressing plan, plan specification, and planned process from the Ontology for Biomedical Investigations ((OBI) and the Information Artifact Ontology (IAO). The Industrial Ontology Foundry (IOF) and Common Core Ontologies (CCO) provide slightly different representations. We plan a deep revision of SuMSO-OBI-IAO representation, envisioning also alignment with those pertaining to IOF and CCO."@en , "Currently, we include the possibility that an activity has as occurrent part (up to solely consist of) only one interaction. We leave open the discussion considering whether an activity requires to have as occurrent parts at least two interactions to exist instead of one."@en , "Further implementations will cover representing plans and plan specifications related to this class, subclasses, and related ones."@en , """SCO interprets agency in relation to interactions. As an activity is composed of interactions, our intuitive understanding is that the agency in an activity should be seen somehow as an integration of the agency(ies) pertaining to the interactions that are part of that activity. Proposal: complex system components that are agents in interactions are agents in the activity. Complex system components that are agents in the majority (if not all) interactions that are part of an activity may be considered by some means as the primary agent of the activity. We leave the discussion open, envisioning conversations with subject matter experts to clarify agency within activities."""@en , "SuMSO must implement to cover classes representing the corresponding spatio-temporal regions and temporal intervals."@en , "This definition requires revision. We envision having discussions with subject matter experts to improve it."@en ; rdfs:label "complex system activity"@en ; rdfs:seeAlso """See for possible implementations and alignments: https://www.ebi.ac.uk/ols4/ontologies/prov/classes/http%253A%252F%252Fwww.w3.org%252Fns%252Fprov%2523Activity http://purl.obolibrary.org/obo/NCIT_C43431 http://purl.obolibrary.org/obo/NCIT_C25404 https://bioportal.bioontology.org/ontologies/STY?p=classes&conceptid=T052 https://bioportal.bioontology.org/ontologies/AURA?p=classes&conceptid=http%3A%2F%2Fwww.projecthalo.com%2Faura%23Activity https://spec.industrialontologies.org/ontology/core/Core/PlannedProcess and subclasses in supply chain ontology and maintenance ontology (IOF ontologies), especially https://spec.industrialontologies.org/ontology/supplychain/SupplyChain/SupplyChainProcess"""@en ; skos:definition "A planned process that has as occurrent parts some (at least one) interactions among complex system components or interactions between complex system components and complex system environment components that are causally concatenated to (seeks to) obtain a certain (often planned/desired) output/fulfill a certain (often planned/desired) function."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000044 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000117 ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] ; rdfs:label "food system activity"@en ; skos:definition "A complex system activity that has as occurrent parts some (at least one) interactions among food system components or interactions between food system components and food system environment components."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000045 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000117 ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] ; rdfs:comment "We started to create classes and axioms for some meat supply chain activities. Further activities as well as related sub-activities are required. We opted to start with activities that the stakeholders of our project suggest as the most relevant."@en ; rdfs:label "meat system activity"@en ; skos:definition "A food system activity that has as occurrent parts some (at least one) interactions among meat system components or interactions between meat system components and meat system environment components."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000046 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000138 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000057 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "food supply chain activity"@en ; skos:definition "A food system activity that is a proper occurrent part of a food supply chain."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000047 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000138 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000057 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "Classes and axioms must be added to represent corresponding plans and plan specifications."@en , "Currently, SuMSO represents meat supply chain activities (and related planned processes) and related inputs and outputs, focusing on humans and cows, especially beef cattle (adult organisms). Further implementations will expand coverage to other animals. in addition, with specific reference to cows, implementations will also deal with different types of cows, species, animal sex, different stages of age, i.e. veal, and corresponding involvement in meat supply chains. Implementations will equally deepen the characterization of cow designation based on involvement and functions within meat supply chains and animal age."@en , "Future implementations will complement meat supply chain activities and interactions that SuMSO currently covers with the corresponding ones that pertain to related companies."@en , "We started to create classes and axioms for some meat supply chain activities. Further activities as well as related sub-activities are required to complete the entire cow meat supply chain. We opted to start with activities that the stakeholders of our project suggest as the most relevant."@en ; rdfs:label "meat supply chain activity"@en ; skos:definition "A meat system activity that is a proper occurrent part of a meat supply chain."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000048 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000055 ; owl:someValuesFrom [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000059 ; owl:someValuesFrom [ owl:intersectionOf ( obo:IAO_0000104 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000084 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ] ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000118 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000118 ; owl:allValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:comment "Possible references to “Farm to Fork” strategies and approaches can be added."@en ; rdfs:label "food supply chain"@en ; skos:definition "A supply chain that has as proper occurrent parts some (at least one) food supply chain activities and and realize the plan that concretizes the plan specification that generically depends on at least one food system component."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000049 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000055 ; owl:someValuesFrom [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000059 ; owl:someValuesFrom [ owl:intersectionOf ( obo:IAO_0000104 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000084 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ] ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000118 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000118 ; owl:allValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "meat supply chain"@en ; skos:definition "A food supply chain that has as proper occurrent parts some (at least one) meat supply chain activities and and realize the plan that concretizes the plan specification that generically depends on at least one meat system component."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000050 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:OBI_0000011 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000055 ; owl:someValuesFrom [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000059 ; owl:someValuesFrom [ owl:intersectionOf ( obo:IAO_0000104 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000084 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ] ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000118 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:OBI_0000011 ; rdfs:comment """Currently, SuMSO represents supply chains as part of complex systems. Supply chain activities are only complex system activities. Depending on SCO implementations regarding system granularity, this class and related ones may be revised to represent the transversality and concatenation of supply chains across different systems. A possible tentative approach: we may create classes for complex system environment activities and supply chains may be considered having both system and system environment activities as concatenated occurrent parts."""@en , "Currently, SuMSO reuse classes addressing plan, plan specification, and planned process from the Ontology for Biomedical Investigations ((OBI) and the Information Artifact Ontology (IAO). The Industrial Ontology Foundry (IOF) and Common Core Ontologies (CCO) provide slightly different representations. We plan a deep revision of SuMSO-OBI-IAO representation, envisioning also alignment with those pertaining to IOF and CCO."@en , "Currently, we include the possibility that a supply chain has as occurrent part (up to solely consist of) only one interaction. We leave open the discussion considering whether a supply chain requires to have as occurrent parts at least two activities to exist instead of one."@en , "SuMSO must implement to cover classes representing the corresponding spatio-temporal regions and temporal intervals."@en ; rdfs:label "supply chain"@en ; rdfs:seeAlso """See also: https://spec.industrialontologies.org/ontology/supplychain/SupplyChain/SupplyChainProcess"""@en ; skos:definition "A planned process that has as proper occurrent parts some (at least one) supply chain activities that are causally concatenated and realize the plan that concretizes the plan specification that generically depends on at lest one complex system component. At least one of the outputs of the activity(-ies) that occurs before is an input for the activity(ies) that follows."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000051 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000138 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "supply chain activity"@en ; skos:definition "A complex system activity that is an occurent part of a supply chain."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000053 rdf:type owl:Class ; rdfs:subClassOf ; owl:disjointWith , ; rdfs:label "product-role"@en ; rdfs:seeAlso """http://purl.allotrope.org/ontologies/role#AFRL_0000018 http://addictovocab.org/ADDICTO_0001113 http://addictovocab.org/ADDICTO_0001114""" ; skos:definition "A role that inheres in a material entity by virtue of realizing in some supply chain activity wherein the bearer is a desired output of that supply chain activity according to the perspective of some corresponding supply chain(s) participants. A product is generally available for sale or purchase along those supply chains."@en ; AnnotationVocabulary:adaptedFrom """https://spec.industrialontologies.org/ontology/core/Core/MaterialProductRole http://addictovocab.org/ADDICTO_0001112 http://purl.allotrope.org/ontologies/role#AFRL_0000360 http://purl.allotrope.org/ontologies/role#AFRL_0000543""" ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000054 rdf:type owl:Class ; rdfs:subClassOf ; oboInOwl:hasVersion "24-09-27"@en ; rdfs:comment "Do not use this class directly. This class is constructed as a grouping to identify stakeholders according to a particular perspective."@en ; rdfs:label "meat system stakeholder - authors perspective"@en ; . ### https://w3id.org/sumso#SuMSO_0000055 rdf:type owl:Class ; rdfs:subClassOf ; oboInOwl:hasVersion "24-09-27"@en ; rdfs:comment "Do not use this class directly. This class is constructed as a grouping to identify stakeholders according to a particular perspective."@en ; rdfs:label "meat system stakeholder - GGRASS perspective"@en ; . ### https://w3id.org/sumso#SuMSO_0000057 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:NCBITaxon_4751 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:NCBITaxon_4751 , ; rdfs:comment "The class fungi is too general and broad. Not all fungi may belong to meat systems. Thus, we include this class to restrict the focus on those who do so. We opted for this solution for reasons of practicality. Nevertheless, a deeper characterization that accounts for specific biological species distinctions is needed. Future implementations will deprecate this class and include the specific ones."@en ; rdfs:label "fungi- meat system"@en ; rdfs:seeAlso """For class definition, see the upper-level class \"fungi\". http://purl.obolibrary.org/obo/NCBITaxon_4751"""@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000058 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , ; rdfs:comment "The class plant is too general and broad. Not all plants may belong to meat systems. Thus, we include this class to restrict the focus on those who do so. We opted for this solution for reasons of practicality. Nevertheless, a deeper characterization that accounts for specific biological species distinctions is needed. future implementation will deprecate this class and include the specific ones."@en ; rdfs:label "plant-meat system"@en ; rdfs:seeAlso """For class definition, see the upper-level class \"plant\". http://www.bioassayontology.org/bao#BAO_0000605"""@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000059 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:NCBITaxon_2 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:NCBITaxon_2 , ; rdfs:comment "The class bacteria is too general and broad. Not all bacteria may belong to meat systems.Thus, we include this class to restrict the focus on those who do so. We opted for this solution for reasons of practicality. Nevertheless, a deeper characterization that accounts for specific biological species distinctions is needed. Future implementations will deprecate this class and include the specific ones."@en ; rdfs:label "bacteria-meat system"@en ; rdfs:seeAlso """For class definition, see the upper-level class \"bacteria\". http://purl.obolibrary.org/obo/NCBITaxon_2"""@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000060 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:NCBITaxon_2157 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:NCBITaxon_2157 , ; rdfs:comment "The class archaea is too general and broad. Not all archea may belong to meat systems. Thus, we include this class to restrict the focus on those who do so. We opted for this solution for reasons of practicality. Nevertheless, a deeper characterization that accounts for specific biological species distinctions is needed. Future implementations will deprecate this class and include the specific ones."@en ; rdfs:label "archaea-meat system"@en ; rdfs:seeAlso """For class definition, see the upper-level class \"archaea\". http://purl.obolibrary.org/obo/NCBITaxon_2157"""@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000061 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:OBI_0000245 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:OBI_0000245 , [ owl:intersectionOf ( obo:OBI_0000245 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "food system organization"@en ; skos:definition "An organization that belongs to a food system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000062 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , , , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "We started to create classes and axioms for some meat supply chain companies and organizations. Additional ones are required to complete this hierarchy. We opted to start with companies that the stakeholders of our project suggest as the most relevant."@en ; rdfs:label "meat system organization"@en ; skos:definition "A food system organization that belongs to a meat system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000063 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000023 ; rdfs:comment """For details, see comments under the \"organization\" class. http://purl.obolibrary.org/obo/OBI_0000245"""@en ; rdfs:label "organization-role"@en ; skos:definition "A role that is bearered by an organization."@en ; AnnotationVocabulary:adaptedFrom """http://www.ebi.ac.uk/efo/EFO_0002012 http://purl.obolibrary.org/obo/OMRSE_00000051""" ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000065 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000023 , [ owl:intersectionOf ( obo:BFO_0000023 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "The definition requires revisions, to include, for instance, reference to features such as salary or working rules. Similarly, we consider possible implementation for non-human workers, such as animals. We envision having discussions with subject matter experts to improve it."@en ; rdfs:label "worker-role"@en ; skos:definition "A role that inheres in a human by virtue of engaging in some supply chain activities."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000066 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:VO_0000299 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( obo:VO_0000299 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "food system company"@en ; skos:definition "A company that belongs to a food system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000067 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000172 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "We use this class to group companies that belong to meat systems."@en ; rdfs:label "meat system company"@en ; skos:definition "A food system company that belongs to a meat system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000068 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; owl:disjointWith ; rdfs:label "certifier"@en ; skos:definition "A human with a certifier role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000069 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom obo:AGRO_00000372 ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "Future implementations may include classes to also represent farmer and rancher companies."@en ; rdfs:label "farmer"@en ; rdfs:seeAlso """See also: http://snomed.info/id/159812002 http://snomed.info/id/106388008 http://purl.obolibrary.org/obo/OCCO_11901000 http://purl.obolibrary.org/obo/OCCO_45000000"""@en ; skos:definition "A human with a farmer role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000070 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom obo:AGRO_00000426 ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002215 ; owl:someValuesFrom obo:AGRO_00000426 ] ) ; rdf:type owl:Class ] ; oboInOwl:hasExactSynonym "cattleman"@en ; oboInOwl:hasRelatedSynonym "producer"@en ; rdfs:label "rancher"@en ; skos:definition "A farmer with a rancher role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000071 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000172 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002584 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:label "tanner company"@en ; skos:definition "A processor company with a tanner role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000072 rdf:type owl:Class ; rdfs:subClassOf obo:AGRO_00000372 , [ owl:intersectionOf ( obo:AGRO_00000372 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "rancher-role"@en ; skos:definition "A farmer-role that inheres in a rancher by virtue of engaging in supply chain activities concerning livestock grazing."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000073 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "processor"@en ; skos:definition "A human with a processor role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000074 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:label "processor-role"@en ; skos:definition "A role that inheres in a human by virtue of engaging in supply chain activities concerning preparing items for marketing or distribution."@en ; AnnotationVocabulary:adaptedFrom "http://purl.obolibrary.org/obo/NCIT_C92651" ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000075 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "slaughterer"@en ; skos:definition "A meat processor with a slaughterer role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000076 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:label "slaughterer role"@en ; rdfs:seeAlso """See also: http://purl.obolibrary.org/obo/IDO_0100592 http://purl.obolibrary.org/obo/OCCO_51302000 http://snomed.info/id/69919006 http://snomed.info/id/106440009 http://snomed.info/id/69919006"""@en ; skos:definition "A meat processor role that inheres in a human by virtue of engaging in supply chain activities concerning killing of animals and the (generally initial) processing and preparation of their carcasses, including cutting into meat portions for consumption by humans."@en ; AnnotationVocabulary:adaptedFrom "http://purl.obolibrary.org/obo/OCCO_51302300" ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000077 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "tanner"@en ; skos:definition "A processor with a tanner role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000078 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:label "tanner-role"@en ; rdfs:seeAlso """See also: http://snomed.info/id/106434002"""@en ; skos:definition "A processor role that inheres in a human by virtue of engaging in supply chain activities concerning tanning animal hides to obtain leather."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000079 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000172 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002584 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "meat aggregator company"@en ; skos:definition "A company with a meat aggregator role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000080 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:comment "We envision the possibility to include a smallholder farmer/rancher class and to change the class label."@en ; rdfs:label "meat aggregator company-role"@en ; skos:definition "A role that inheres in a company by virtue of its commitment to purchase animals from smallholders for resale in large quantities to some meat supply chain actors or companies that participate in the downstream meat supply chain activities. This requires the company to employ workers to engage in meat supply chain activities necessary to fulfill its commitment."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000081 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:VO_0000299 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:VO_0000299 , [ owl:intersectionOf ( obo:VO_0000299 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000172 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:VO_0000299 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002584 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "verifier company"@en ; skos:definition "A company with a verifier role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000082 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:comment "We envision including additional details regarding the type of compliance and type of entity concerned, e.g a certain activity, protocol, product, etc."@en ; rdfs:label "verifier-role"@en ; rdfs:seeAlso """See also: http://purl.obolibrary.org/obo/OCCO_00000118 and subclasses."""@en ; skos:definition "A role that inheres in a human by virtue of engaging in supply chain activities concerning verifying and assessing compliance with a specified benchmark (criteria) prescribed by a certain certification."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000083 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:VO_0000299 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:VO_0000299 , [ owl:intersectionOf ( obo:VO_0000299 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000172 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:VO_0000299 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002584 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "certifier company"@en ; skos:definition "A company with a certifier role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000084 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:comment "We envision including additional details regarding the type of compliance and type of entity concerned, e.g a certain activity, protocol, product, etc."@en ; rdfs:label "certifier- role"@en ; rdfs:seeAlso """See also: http://purl.obolibrary.org/obo/OCCO_00000118 and subclasses."""@en ; skos:definition "A role that inheres in a human by virtue of engaging in supply chain activities concerning attesting compliance with a specified benchmark (criteria) prescribed by a certain certification."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000085 rdf:type owl:Class ; rdfs:subClassOf obo:IAO_0000005 ; rdfs:comment "We envision conversations with subject matter experts to further detail this definition. Possible topics of discussion will cover the relation with plans and activities."@en ; rdfs:label "impact area"@en ; skos:definition "An objective specification that generically depends on some complex system component or complex system environment component and describes an intended process endpoint concerning the change that the complex system component or complex system environment component wishes to see in the related complex system, according to its perspective."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000086 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000016 , [ owl:intersectionOf ( obo:BFO_0000016 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000177 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; terms:source """https://doi.org/10.1016/0047-2727(74)90006-1 https://doi.org/10.2307/3439966 https://tannerlectures.utah.edu/_resources/documents/a-to-z/s/sen80.pdf https://doi.org/10.1093/0198287976.001.0001 https://scholar.harvard.edu/sen/publications/development-capability-expansion""" ; oboInOwl:hasExactSynonym "well-being, wellbeing"@en ; oboInOwl:hasRelatedSynonym "welfare"@en ; rdfs:label "complex system component well-being"@en ; skos:definition "A disposition whose realization leads the complex system component to freely choose among alternative combinations of valuable and considered-valuable functionings (doings and beings) that owns and among which it can opt to live a life worthy of value and that has the motive to value as a part of the complex system to which it belongs."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released ; , . ### https://w3id.org/sumso#SuMSO_0000087 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000059 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom [ owl:intersectionOf ( obo:NCBITaxon_33208 [ rdf:type owl:Class ; owl:complementOf obo:NCBITaxon_9606 ] ) ; rdf:type owl:Class ] ] [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_subject_of ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; oboInOwl:hasRelatedSynonym "animal well-being, animal wellbeing"@en ; rdfs:comment "Despite humans are animals, the term \"animal welfare\" is primarily used excluding reference to humans. We kept track of this feature, creating a separated class for human wellbeing. Possible revision of these classes may be required."@en ; rdfs:label "animal welfare"@en ; rdfs:seeAlso """http://purl.obolibrary.org/obo/OMIT_0002232 http://opendata.inra.fr/Triphase/ID_0000301 http://aims.fao.org/aos/agrovoc/xDef_2a5186fd""" , """https://www.ggrass.org/ https://regenscore.org/""" ; skos:definition "A complex system component well-being that is bearered by an animal. Features related to animal welfare include freedom from hunger, thirst, discomfort, and any sort of harm or disease, access to adequate and salutary living spaces, clean water, and safe and nutritious food, freedom to express proper instinctive behaviors, freedom from distress and fear, absence of treatment with prohibited medications and substances, and a minimally painful demise."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000088 rdf:type owl:Class ; owl:equivalentClass _:genid1185 ; rdfs:subClassOf ; oboInOwl:hasRelatedSynonym "cow well-being, cow wellbeing,"@en ; rdfs:comment "The label may be revised to refer more generally to bovines. Additional classes may be used to specify well-being of single species."@en ; rdfs:label "cow welfare"@en ; skos:definition "A animal welfare that is bearered by a cow."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . _:genid1185 owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000059 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom obo:NCBITaxon_9913 ] [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_subject_of ; owl:someValuesFrom ] ) ; rdf:type owl:Class . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedTarget _:genid1185 ; rdfs:comment "This axiom may be revised to refer more general to Bos."@en ] . ### https://w3id.org/sumso#SuMSO_0000089 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000016 , [ owl:intersectionOf ( obo:BFO_0000016 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000059 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_subject_of ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:BFO_0000016 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000110 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; terms:source """https://doi.org/10.1016/0047-2727(74)90006-1 https://doi.org/10.2307/3439966 https://tannerlectures.utah.edu/_resources/documents/a-to-z/s/sen80.pdf https://doi.org/10.1093/0198287976.001.0001 https://scholar.harvard.edu/sen/publications/development-capability-expansion"""@en ; rdfs:comment "Here, the well-being of a whole complex system is seen as more than the simple sum of the well-being of all its parts."@en ; rdfs:label "complex system well-being"@en ; skos:definition "A disposition whose realization leads all complex system components to choose freely and in an integrable manner among alternative combinations of valuable and considered-valuable functionings (doings and beings) that they interdependently own and among which they can opt to live a life worthy of value and that has the motive to value as a part of the complex system to which they belong."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000090 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000059 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_subject_of ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000178 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000178 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "food system well-being"@en ; skos:definition "A complex system well-being that is bearered by a food system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000091 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000059 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_subject_of ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , _:genid1228 ; rdfs:label "meat system well-being"@en ; skos:definition "A food system well-being that is bearered by a meat system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . _:genid1228 owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000178 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000178 ; owl:someValuesFrom ] ) ; rdf:type owl:Class . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty rdfs:subClassOf ; owl:annotatedTarget _:genid1228 ; rdfs:comment "This axiom currently includes reference to cow well-being. Implementations may establish distinctions between diverse meat systems as not all meat systems relate necessary to cows. This axiom must be revised accordingly."@en ] . ### https://w3id.org/sumso#SuMSO_0000092 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( CommonCoreOntologies:InformationContentEntity [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_about ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf CommonCoreOntologies:InformationContentEntity ; rdfs:comment "We envision to consider dependence on complex system components."@en ; rdfs:label "complex system well-being information content entity"@en ; skos:definition "An information content entity that generically depends on some complex system and is about the complex system well-being (that concretizes it) of that complex system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000093 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( CommonCoreOntologies:InformationContentEntity [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_about ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf CommonCoreOntologies:InformationContentEntity ; rdfs:label "complex system component well-being information content entity"@en ; skos:definition "An information content entity that generically depends on some complex system component and is about the well-being (that concretizes it) of that complex system component."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000094 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:comment "The class verifier is too general and broad. Not all verifiers may belong to meat systems. Thus, we include this class to restrict the focus on those who do so. We opted for this solution for reasons of practicality. Future implementations will deprecate this class and include the specific ones."@en ; rdfs:label "meat supply chain verifier"@en ; skos:definition "A verifier with a meat supply chain verifier role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000095 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000172 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002584 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "Further details are required to specify this characterization. Additional subclasses may be required."@en , "The class verifier company is too general and broad. Not all verifiers may belong to meat systems. Thus, we include this class to restrict the focus on those who do so. We opted for this solution for reasons of practicality. Future implementations will deprecate this class and include the specific ones."@en ; rdfs:label "meat supply chain verifier company"@en ; skos:definition "A verifier company with a meat supply chain verifier role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000096 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000172 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002584 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "Further details are required to specify this characterization. Additional subclasses may be required."@en , "The class certifier company is too general and broad. Not all verifiers may belong to meat systems. Thus, we include this class to restrict the focus on those who do so. We opted for this solution for reasons of practicality. Future implementations will deprecate this class and include the specific ones."@en ; rdfs:label "meat supply chain certifier company"@en ; skos:definition "A certifier company with a meat supply chain certifier role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000097 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:NCBITaxon_9606 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:NCBITaxon_9606 ; rdfs:comment "SuMSO currently limits this term to refer to humans. Future implementations will deal with considering machines as workers, for instance, to substitute humans in participating in supply chain activities."@en , "We started to create classes and axioms for some meat supply chain workers. Additional ones are required to complete this hierarchy. We opted to start with those that the stakeholders of our project suggest as the most relevant."@en ; rdfs:label "worker (human)"@en ; skos:definition "A human with a worker role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000098 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000059 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom obo:NCBITaxon_9606 ] [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_subject_of ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:comment "A subclass for representing worker welfare may be added, if needed."@en ; rdfs:label "human well-being"@en ; skos:definition "A well-being that is bearered by a human."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000099 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_03601066 , [ owl:intersectionOf ( obo:FOODON_03601066 [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_about ; owl:someValuesFrom obo:NCBITaxon_9913 ] ) ; rdf:type owl:Class ] ; rdfs:comment "We adapted the upper-level calss defintion to cows."@en ; rdfs:label "cow grass-fed food product claim"@en ; skos:definition "A grass-fed food product claim that regards the cows which the food product derives from, were fed a grass or forage-based diet."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000100 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002215 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:label "meat processor"@en ; skos:definition "A processor with a meat processor role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000101 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:label "meat processor-role"@en ; skos:definition "A processor role that inheres in a human by virtue of engaging in supply chain activities concerning preparing meat items for marketing or distribution."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000102 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000172 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002584 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002584 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "meat processor company"@en ; skos:definition "A processor company with a meat processor role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000103 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000023 , [ owl:intersectionOf ( obo:BFO_0000023 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom obo:NCIT_C53568 ] ) ; rdf:type owl:Class ] ; rdfs:comment "Future implementation may cover refernce to products, by-products, and waste as well as to people awareness concerning consumption features."@en , "Implementation may cover refernce to products, by-products, and waste as well as to people awareness concerning consumption features. To also consider possible corresponding dispositions to consume."@en ; rdfs:label "consumer-role"@en ; skos:definition "A role that inheres in a human by virtue of engaging in some supply chain activities concerning buying and using items produced along this supply chain. These activities are typically to be among the final stages of a supply chain, occurring prior to waste disposal and recycling."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000104 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:NCIT_C53568 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:NCIT_C53568 , , , [ owl:intersectionOf ( obo:NCIT_C53568 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:NCIT_C53568 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000056 ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:NCIT_C53568 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "We created this class to narrow the focus on consumers engaged with meat systems. Future implementations will revise this class, including more specific ones."@en ; rdfs:label "meat system consumer"@en ; skos:definition "A consumer who is part of a meat system and engages in some supply chain activities concerning buying and using meat and other animal-derived items produced along a meat supply chain."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000105 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:VO_0000299 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:VO_0000299 , [ owl:intersectionOf ( obo:VO_0000299 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000172 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:comment "We envision including some classes to represent people working at those companies such as sellers and buyers."@en ; rdfs:label "aggregator company"@en ; skos:definition "A company with an aggregator role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000106 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:comment "We envision the possibility to include a smallholder class."@en ; rdfs:label "aggregator company-role"@en ; skos:definition "A role that inheres in a company by virtue of its commitment to purchase items from smallholders for resale in large quantities to some supply chain actors or companies that participate in the downstream supply chain activities. This requires the company to employ workers to engage in supply chain activities necessary to fulfill its commitment."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000107 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:comment "We envision including additional details regarding the type of compliance and type of meat supply chain-related entity concerned, e.g a certain activity, protocol, product, etc."@en ; rdfs:label "meat supply chain certifier-role"@en ; skos:definition "A role that inheres in a certifier by virtue of engaging in meat supply chain activities concerning attesting compliance with a specified benchmark (criteria), prescribed by a certain certification, with regard to meat supply chain activities and related items."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000108 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:comment "We envision including additional details regarding the type of compliance and type of meat supply chain-related entity concerned, e.g a certain activity, protocol, product, etc."@en ; rdfs:label "meat supply chain verifier-role"@en ; skos:definition "A role that inheres in verifier by virtue of engaging in meat supply chain activities concerning verifying and assessing compliance with a specified benchmark (criteria), prescribed by a certain certification, with regard to meat supply chains."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000109 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:comment "This class is general. Subclasses providing specific types of interactions may be added in future implementations.This class is general. Subclasses providing specific types of interactions may be added in future implementations."@en ; rdfs:label "rancher-cow interaction"@en ; skos:definition "An interaction that occurs between at least one rancher and at one cow."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000110 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom obo:NCBITaxon_9913 ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "cow perspective"@en ; skos:definition "A perspective that is bearered by a cow."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000111 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "meat system worker perspective"@en ; skos:definition "A perspective that is bearered by a meay system worker."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000112 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "farmer perspective"@en ; skos:definition "A meat system worker perspective that is bearered by a farmer."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000113 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "rancher perspective"@en ; skos:definition "A farmer perspective that is bearered by a rancher."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000114 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "meat aggregator perspective"@en ; skos:definition "A meat system worker perspective that is bearered by a meat aggregator." ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000115 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "meat processor perspective"@en ; skos:definition "A meat system worker perspective that is bearered by a meat processor."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000116 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "slaughterer perspective"@en ; skos:definition "A meat processor perspective that is bearered by a slaughterer."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000117 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "meat supply chain certifier perspective"@en ; skos:definition "A meat system worker perspective that is bearered by a meat supply chain certifier."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000118 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "meat supply chain verifier perspective"@en ; skos:definition "A meat system worker perspective that is bearered by a meat supply chain verifier."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000119 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "tanner perspective"@en ; skos:definition "A meat system worker perspective that is bearered by a tanner."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000120 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "meat system consumer perspective"@en ; skos:definition "A perspective that is bearered by a meat system consumer."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000121 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "meat system organization perspective"@en ; skos:definition "A perspective that is bearered by a meat system organization."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000122 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "meat system company perspective"@en ; skos:definition "A meat system organization perspective that is bearered by a meat system company."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000123 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "meat aggregator company perspective"@en ; skos:definition "A meat system company perspective that is bearered by a meat aggregator company."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000124 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "meat processor company perspective"@en ; skos:definition "A meat system company perspective that is bearered by a meat processor company."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000125 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "slaughterer company perspective"@en ; skos:definition "A meat processor company perspective that is bearered by a slaughterer company."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000126 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "meat supply chain certifier company perspective"@en ; skos:definition "A meat system company perspective that is bearered by a meat supply chain certifier company."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000127 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "meat supply chain verifier company perspective"@en ; skos:definition "A meat system company perspective that is bearered by a meat supply chain verifier company."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000128 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "tanner company perspective"@en ; skos:definition "A meat system company perspective that is bearered by a tanner company."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000133 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "We envision the possibility to include a smallholder class."@en ; rdfs:label "verifier company-role"@en ; skos:definition "A role that inheres in a company by virtue of its commitment to assessing compliance with a specified benchmark (criteria) prescribed by a certain certification, thereby requiring employing workers to engage in supply chain activities necessary to fulfill its commitment."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000134 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "meat supply chain verifier company-role"@en ; skos:definition "A role that inheres in a company by virtue of its commitment to verifying and assessing compliance with a specified benchmark (criteria) prescribed by a certain certification, with regard to meat supply chains. This requires the company to employ workers to engage in meat supply chain activities necessary to fulfill its commitment."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000135 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "We envision including additional details regarding the type of compliance and type of entity concerned, e.g a certain activity, protocol, product, etc."@en ; rdfs:label "certifier company-role"@en ; rdfs:seeAlso """See also: http://purl.obolibrary.org/obo/OCCO_00000118 and subclasses."""@en ; skos:definition "A role that inheres in a company by virtue of its commitment to attesting compliance with a specified benchmark (criteria), prescribed by a certain certification, thereby requiring employing workers to engage in supply chain activities necessary to fulfill its commitment."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000136 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "We envision including additional details regarding the type of compliance and type of meat supply chain-related entity concerned, e.g a certain activity, protocol, product, etc."@en ; rdfs:label "meat supply chain certifier company-role"@en ; skos:definition "A role that inheres in a certifier company by virtue of its commitment to attesting compliance with a specified benchmark (criteria), prescribed by a certain certification, concerning meat supply chain activities and related items. This requires the company to employ workers to engage in meat supply chain activities necessary to fulfill its commitment."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000137 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "processor company-role"@en ; skos:definition "A role that inheres in a company by virtue of its commitment to preparing items for marketing or distribution, thereby requiring employing workers to engage in supply chain activities necessary to fulfill its commitment."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000138 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "meat processor company-role"@en ; skos:definition "A role that inheres in a company by virtue of its commitment to preparing meat items for marketing or distribution, thereby requiring employing workers to engage in meat supply chain activities necessary to fulfill its commitment."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000139 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "slaughterer company-role"@en ; skos:definition "A role that inheres in a company by virtue of its commitment to killing of animals and (generally initial) processing and preparation of their carcasses, including cutting into meat portions for consumption by humans, thereby requiring employing workers to engage in meat supply chain activities necessary to fulfill its commitment."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000140 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "tanner company-role"@en ; skos:definition "A role that inheres in a company by virtue of its commitment to tanning animal hides to obtain leather, thereby requiring employing workers to engage in supply chain activities necessary to fulfill its commitment."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000141 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "aggregator-role"@en ; skos:definition "An role that inheres in a human by virtue of engaging in supply chain activities concerning the purchase of items from smallholders for resale in large quantities to some supply chain actors or companies that participate in the downstream supply chain activities."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000142 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "meat aggregator-role"@en ; skos:definition "An aggregator role that inheres in a human by virtue of engaging in supply chain activities concerning the purchase of animals from smallholders for resale in large quantities to some supply chain actors or companies that participate in the downstream supply chain activities."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000143 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "aggregator"@en ; skos:definition "A humanr with a aggregator role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000144 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:comment """We envision improving this definition and those of the subclasses we created to encompass references to legal reasons and values established and generated through the constitution of the company and its exercise. This class and related subclasses also require axiomatizations to cover references to information content entities related to company commitment. We envision creating new information content entity classes for this scope."""@en ; rdfs:label "company-role"@en ; skos:definition "A role that is bearered by a company."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000145 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:comment "See comments under the \"certification issuance process\" class."@en , "We envision revisions of this definition to provide more details."@en ; rdfs:label "meat system certification issuance process"@en ; skos:definition "A certification issuance process that pertains to meat systems and related meat supply chains."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000146 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( obo:BFO_0000016 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; terms:source """1-55963-856-7 https://pure.iiasa.ac.at/id/eprint/26/1/RP-73-003.pdf https://pure.iiasa.ac.at/id/eprint/13667/?template=default_internal""" ; rdfs:comment "Further classes are needed to represent system states and perturbations. Implementations will cover these aspects.Revisions will be carried out in accordance with SCO implementations regarding system behaviors."@en , "This term must be included within SCO."@en ; rdfs:label "system stability"@en ; rdfs:seeAlso """http://purl.obolibrary.org/obo/PATO_0015026 http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C54072 http://www.eionet.europa.eu/gemet/concept/15139 http://aims.fao.org/aos/agrovoc/c_36930 http://id.agrisemantics.org/gacs/C3602"""@en ; skos:definition "A disposition whose realization leads a complex system to re-acquire its previous stable state of equilibrium after a perturbation."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000147 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:VO_0000299 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:VO_0000299 , [ owl:intersectionOf ( obo:VO_0000299 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000172 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; oboInOwl:hasRelatedSynonym "agriculture company, agricultural company."@en ; rdfs:comment "We envision discussions with subject matter experts to identify alternative labels."@en ; rdfs:label "farm company"@en ; skos:definition "A company with a farm company role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000148 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000172 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002584 ; owl:someValuesFrom obo:AGRO_00000426 ] ) ; rdf:type owl:Class ] ; rdfs:comment "We envision discussions with subject matter experts to identify alternative labels."@en ; rdfs:label "ranch company"@en ; skos:definition "A farm company with a ranch company role."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000149 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "farm company-role"@en ; skos:definition "A role that inheres in a farm company by virtue of its commitment to livestock grazing, thereby requiring employing workers to engage in supply chain activities necessary to fulfill its commitment."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000150 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "ranch company-role"@en ; skos:definition "A role that inheres in a company by virtue of its commitment to agriculture, thereby requiring employing workers to engage in supply chain activities necessary to fulfill its commitment."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000151 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "farm company perspective"@en ; skos:definition "A perspective that is bearered by a farm company."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000152 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "ranch company perspective"@en ; skos:definition "A perspective that is bearered by a ranch company."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000153 rdf:type owl:Class ; rdfs:subClassOf obo:OBI_0000094 , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000117 ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002404 ; owl:someValuesFrom obo:AGRO_00000426 ] ) ; rdf:type owl:Class ] ; oboInOwl:hasRelatedSynonym "meat preparation"@en ; rdfs:comment "A class for cow meat processing (subclass of \"meat processing\" one) can be created on necessity."@en ; rdfs:label "meat processing"@en ; rdfs:seeAlso "http://purl.jp/bio/4/id/200906083027936198"@en ; skos:definition "A planned process that concerns preparing meat items for marketing or distribution, including animal slaughtering,animal carcass cutting, meat portion preparation, and meat packing for distribution."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000154 rdf:type owl:Class ; rdfs:subClassOf obo:AGRO_00000426 , [ owl:intersectionOf ( obo:AGRO_00000426 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000117 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , _:genid1561 , [ owl:intersectionOf ( obo:AGRO_00000426 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002411 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "We created this class to specify the corresponding upper-level class “regulation of grazing” for cows. The other grazing classes can be equally specified as needed."@en ; rdfs:label "regulation of cow grazing"@en ; skos:definition "Regulation of grazing that specifically regards cows."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . _:genid1561 owl:intersectionOf ( obo:AGRO_00000426 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty rdfs:subClassOf ; owl:annotatedTarget _:genid1561 ; rdfs:comment "Alternatively, the object property \"regulates\" may be used here."@en ] . ### https://w3id.org/sumso#SuMSO_0000155 rdf:type owl:Class ; rdfs:subClassOf obo:OBI_0000094 , [ owl:intersectionOf ( obo:OBI_0000094 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000057 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:OBI_0000094 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002404 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:OBI_0000293 ; owl:someValuesFrom obo:GSSO_008727 ] [ rdf:type owl:Restriction ; owl:onProperty obo:OBI_0000299 ; owl:someValuesFrom obo:GSSO_008728 ] [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0004008 ; owl:someValuesFrom obo:GSSO_008728 ] [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0004009 ; owl:someValuesFrom obo:GSSO_008727 ] ) ; rdf:type owl:Class ] ; oboInOwl:hasExactSynonym "tanning"@en ; rdfs:comment "Implementation will deepen the characterization of this activity, including classes to describe sub-activities that are its occurrent parts. Details are required to also address passages from animal skin to animal hide. Similarly, implementations must restrict to animals and animals skins used for hide tanning."@en , "We envision discussions with subject matter experts to improve this definition. Possible implementations may regard references to tanning substances and methods. Possible subclasses may be included."@en ; rdfs:label "hide tanning"@en ; skos:definition "A planned process that involves treating animal hides to obtain leather for human usage."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000156 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:OBI_0000293 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:OBI_0000299 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0004008 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0004009 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002404 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "cattle hide tanning"@en ; skos:definition "Hide tanning that specifically concerns the treatment of cattle hides to obtain cattle leather."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000159 rdf:type owl:Class ; rdfs:subClassOf ; owl:disjointWith ; rdfs:label "by-product-role"@en ; skos:definition "A role that inheres in a material entity by virtue of realizing in some supply chain activity wherein the bearer is an output of that supply chain activity and is perceived as lacking primary relevance according to the perspective of some corresponding supply chain(s) participants. A product may be available for sale or purchase along the corresponding supply chain(s)."@en ; AnnotationVocabulary:adaptedFrom "http://purl.allotrope.org/ontologies/role#AFRL_0000359" ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000160 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "waste-role"@en ; skos:definition "A role that inheres in a material entity by virtue of realizing in some supply chain activity wherein the bearer is an output of that supply chain activity and is discarded or not utilized further along the corresponding supply chain(s) because deemed undesirable or perceived as lacking utility or dangerous, according to the perspective of some participants of those supply chains."@en ; AnnotationVocabulary:adaptedFrom "http://purl.obolibrary.org/obo/ENVO_01000665" ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000161 rdf:type owl:Class ; rdfs:subClassOf obo:GSSO_008727 , , [ owl:intersectionOf ( obo:GSSO_008727 [ rdf:type owl:Restriction ; owl:onProperty obo:OBI_0000295 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; oboInOwl:hasRelatedSynonym "cow hide"@en ; rdfs:label "cattle hide"@en ; skos:definition "An animal hide that is derived from cows."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000162 rdf:type owl:Class ; rdfs:subClassOf obo:GSSO_008728 , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:OBI_0000312 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; oboInOwl:hasRelatedSynonym "cow leather"@en ; rdfs:label "cattle leather"@en ; skos:definition "An animal leather that is obtained from tanning cattle hides."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000163 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:NCBITaxon_10239 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:NCBITaxon_10239 ; rdfs:comment "The class \"virus\" is too general and broad. Not all viruses may belong to meat systems. Thus, we include this class to restrict the focus on those who do so. We opted for this solution for reasons of practicality. Nevertheless, a deeper characterization that accounts for specific virus species distinctions is needed. Future implementations will deprecate this class and include the specific ones."@en ; rdfs:label "virus-meat system"@en ; rdfs:seeAlso """For class definition, see the upper-level class \"viruses\". http://purl.obolibrary.org/obo/NCBITaxon_10239"""@en . ### https://w3id.org/sumso#SuMSO_0000164 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020910 ; oboInOwl:hasExactSynonym "cattle skin, beef skin"@en ; rdfs:label "cow skin"@en ; skos:definition "The organ covering the body of a cow that consists of the dermis and epidermis."@en ; AnnotationVocabulary:adaptedFrom "http://purl.obolibrary.org/obo/UBERON_0002097" ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000165 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020910 ; rdfs:label "cow intestine"@en ; skos:definition "Segment of the alimentary canal extending from the abomasum to the anus and consisting of two segments, the small intestine and the large intestine."@en ; AnnotationVocabulary:adaptedFrom "http://purl.obolibrary.org/obo/UBERON_0000160"@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000166 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020910 ; rdfs:comment "This class aims to be a broad and general class to refer to cow’s bones and skeletal elements. Future implementations may deepen into distinguishing different types of bones, elements, and tissues. See UBERON classes for more details."@en ; rdfs:label "beef bone (skeletal element)"@en ; skos:definition "An organ consisting of skeletal tissue that belongs to a cattle. It encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles."@en ; AnnotationVocabulary:adaptedFrom """http://purl.obolibrary.org/obo/UBERON_0001474 http://purl.obolibrary.org/obo/UBERON_0004765""" ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000167 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020910 ; rdfs:label "beef horn"@en ; skos:definition "A pointed projection of the skin on the head of a cattle, consisting of a covering of horn (keratin and other proteins) surrounding a core of living bone."@en ; AnnotationVocabulary:adaptedFrom "http://purl.obolibrary.org/obo/UBERON_0006967" ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000168 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000015 ; rdfs:comment "We created this class as a grouping class. Do not use it directly."@en , """We imported these classes as a tentative for representing variations of quality/realizable entities pertaining to meat systems and their components in relation to certain processes, such as supply chain activity. More generally, this is an initial attempt towards representing changing behaviors of behaviors. Relations, such as http://purl.obolibrary.org/obo/RO_0019000, could also be used. To represent variations of quality/realizable with respect to different processes, ad hoc relations may be developed. We envision discussions with subject matter experts to deepen this characterization."""@en ; rdfs:label "increase/decrese/gain/loss of dependent continunat"@en . ### https://w3id.org/sumso#SuMSO_0000169 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000023 ; rdfs:comment "Do not use this class directly. This class has been constructed as a grouping for supply chain outcome roles to assist class retrieval and visualization."@en ; rdfs:label "supply chain outcome role"@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000170 rdf:type owl:Class ; rdfs:subClassOf obo:ENVO_00003031 , [ owl:intersectionOf ( obo:ENVO_00003031 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:ENVO_00003031 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0001000 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "This class aims to refer to manure deriving from cow’s feces broadly, including liquid and solid manure and manure deriving from feces deposited on the grass by cows."@en ; rdfs:label "bovine manure"@en ; skos:definition "manure that derives from cows."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000171 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_03301750 , [ owl:intersectionOf ( obo:FOODON_03301750 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:FOODON_03301750 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0001000 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:FOODON_03301750 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002352 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "Further implementations will include new classes to specify which plants are used as forage for cows."@en ; rdfs:label "bovine forage"@en ; skos:definition "Forage that is eaten by cows."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000172 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_02020890 , [ owl:intersectionOf ( obo:FOODON_02020890 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0003001 ; owl:someValuesFrom obo:NCBITaxon_9913 ] ) ; rdf:type owl:Class ] ; rdfs:comment "Implementations will address the role of waste that feces have with respect to cows and possibly other roles they have with respect to meat system supply chain activities."@en ; rdfs:label "cow feces"@en ; skos:definition "A portion of semisolid bodily material that is discharged through the anus of a cow."@en ; AnnotationVocabulary:adaptedFrom "http://purl.obolibrary.org/obo/UBERON_0001988" ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000173 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002411 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "Here, we focus on beef cattle as they are the primarily cow slaughtered for meat production. However, future implementations will expand the characterization to also other type of cows."@en ; rdfs:label "beef cattle killing"@en ; skos:definition "A protocol application in which a beef cattle is intentionally put to death."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000174 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:comment "This class is general. Subclasses providing specific types of interactions may be added in future implementations.This class is general. Subclasses providing specific types of interactions may be added in future implementations."@en ; rdfs:label "tanner-animal hide interaction"@en ; skos:definition "An interaction that occurs between at least one tanner and animal hides."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000175 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:comment "This class is general. Subclasses providing specific types of interactions may be added in future implementations.This class is general. Subclasses providing specific types of interactions may be added in future implementations." ; rdfs:label "cow-forage interaction"@en ; skos:definition "An interaction that occurs between cows (at least one) and their forage."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000176 rdf:type owl:Class ; rdfs:subClassOf obo:ECOCORE_00000139 , [ owl:intersectionOf ( obo:AGRO_00002071 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002411 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:ECOCORE_00000139 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000057 ; owl:someValuesFrom obo:NCBITaxon_9913 ] ) ; rdf:type owl:Class ] , _:genid1650 ; rdfs:label "cow grazing"@en ; skos:definition "A grazing process that pertain to cows."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . _:genid1650 owl:intersectionOf ( obo:ECOCORE_00000139 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002234 ; owl:someValuesFrom ] ) ; rdf:type owl:Class . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty rdfs:subClassOf ; owl:annotatedTarget _:genid1650 ; rdfs:comment "This axiom must be implemented, for instance with reference to GHG emissions."@en ] . ### https://w3id.org/sumso#SuMSO_0000177 rdf:type owl:Class ; rdfs:subClassOf , ; CommonCoreOntologies:definition "An interaction that occurs between at lest one slaughterer and one cow."@en ; rdfs:label "slaughterer-cow interaction"@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000178 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000066 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002233 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000057 ; owl:someValuesFrom obo:NCBITaxon_9913 ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000117 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "cow pasture grazing"@en ; skos:definition "A cow grazing process that occurs on pasture fields."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000179 rdf:type owl:Class ; rdfs:subClassOf obo:ENVO_00000114 , [ owl:intersectionOf ( obo:ENVO_00000114 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "This class aims to represent fields used for animal pasture. Those fields are part of/ correspond to related pasture ecosystems. See the corresponding EnvO class from which we adapted this class."@en ; rdfs:label "pasture field"@en ; skos:definition "An agricultural field that is used for grazing of ungulate livestock, such as cows. It is part of the pasture ecosystem of a farm or ranch."@en ; AnnotationVocabulary:adaptedFrom "http://purl.obolibrary.org/obo/ENVO_00000266" ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000180 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0019001 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000057 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "increase of cow welfare"@en ; skos:definition "An increase of welfare that is realized in a cow."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000181 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:comment "This class is general. Subclasses providing specific types of interactions may be added in future implementations.This class is general. Subclasses providing specific types of interactions may be added in future implementations." ; rdfs:label "meat processor-meat system Metazoa interaction"@en ; skos:definition "An interaction that occurs among Metazoa, that are part of a meat system, of which at least one is a meat processor."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000182 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:comment "This class is general. Subclasses providing specific types of interactions may be added in future implementations.This class is general. Subclasses providing specific types of interactions may be added in future implementations." ; rdfs:label "meat processor-cow interaction"@en ; skos:definition "An interaction that occurs between at lest one meat processor and one cow."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000183 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:comment "This class is general. Subclasses providing specific types of interactions may be added in future implementations.This class is general. Subclasses providing specific types of interactions may be added in future implementations." ; rdfs:label "meat processor-meat interaction"@en ; skos:definition "An interaction that occurs between at lest one meat processor and one cow."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000184 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:comment "This class is general. Subclasses providing specific types of interactions may be added in future implementations.This class is general. Subclasses providing specific types of interactions may be added in future implementations." ; rdfs:label "rancher-meat system Metazoa interaction"@en ; skos:definition "An interaction that occurs among Metazoa, that are part of a meat system, of which at least one is a rancher."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000186 rdf:type owl:Class ; rdfs:subClassOf obo:OBI_0600006 ; obo:IAO_0000118 "meat system animal killing"@en ; rdfs:comment "Currently, SuMSO uses this general class. A more specific subclass is required to restrict to animals used for human consumption."@en , "In this ontology the term “animal” also refers to humans, as they are Metazoa (animals).Nevertheless, with regard to meat systems, the expression “animal killing” typically restricts to non-human animals. Thus, for the purpose of this class, the term “animal” does not apply to humans. Additional classes and axioms may be added to revise this representation if the need arises."@en , "We use this class to refer to animals that are part of meat systems. The label may be revised."@en ; rdfs:label "animal killing"@en ; skos:definition "A protocol application in which an animal is intentionally put to death"@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000188 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:comment "This class is general. Subclasses providing specific types of interactions may be added in future implementations.This class is general. Subclasses providing specific types of interactions may be added in future implementations." ; rdfs:label "slaughterer-meat interaction"@en ; skos:definition "An interaction that occurs between at lest one slaughterer and one cow."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000189 rdf:type owl:Class ; rdfs:subClassOf obo:FOODON_00000071 , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002404 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "Currently, we include this class as a subclass of the“food cutting” one. We envision discussions regarding the notion of food to evaluate whether carcasses can be seen as food or further processing is required."@en , "This is a general class. Implementations will deepen into different types of cuttings per se and in relation to other cow slaughtering activities, such as evisceration and preparation of meat cuts."@en ; rdfs:label "cow carcass cutting"@en ; skos:definition "A cutting process that applies to cow carcasses."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000190 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( CommonCoreOntologies:IncreaseOfDisposition [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0019001 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf CommonCoreOntologies:IncreaseOfDisposition , [ owl:intersectionOf ( CommonCoreOntologies:IncreaseOfDisposition [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000057 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "increase of animal welfare"@en ; skos:definition "An increase of welfare that is realized in an animal (not humans)."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000191 rdf:type owl:Class ; rdfs:subClassOf ; CommonCoreOntologies:definition "An interaction that occurs between amon Metazoa, that are part of a meat system, of which one is a slaughterer."@en ; rdfs:label "slaughterer-meat system Metazoa interaction"@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000192 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000057 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0019000 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "loss of cow welfare"@en ; skos:definition "A loss of welfare that is realized in a cow."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000193 rdf:type owl:Class ; rdfs:subClassOf CommonCoreOntologies:LossOfDisposition , [ owl:intersectionOf ( CommonCoreOntologies:LossOfDisposition [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000057 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( CommonCoreOntologies:LossOfDisposition [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0019000 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "loss of animal welfare"@en ; skos:definition "A loss of welfare that is realized in an animal."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000194 rdf:type owl:Class ; rdfs:subClassOf obo:OBI_0000011 ; obo:IAO_0000118 "meat system animal aggregation process"@en ; rdfs:comment "In this ontology the term “animal” also refers to humans, as they are Metazoa (animals).Nevertheless, with regard to meat systems, the expression “animal aggregation process” typically restricts to non-human animals. Thus, for the purpose of this class, the term “animal” does not apply to humans. Additional classes and axioms may be added to revise this representation if the need arises."@en , "Revision must restrict this class to animals used for human consumption."@en , "We envision a revision of the label of this class."@en , "We use this class to refer to animals that are part of meat systems."@en ; rdfs:label "animal aggregation process"@en ; skos:definition "A planned process that concerns the purchase of animals from smallholders for resale in large quantities to some supply chain actors or companies that participate in the downstream supply chain activities."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000195 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:comment "We envision a revision of the label of this class."@en ; rdfs:label "cow aggregation process"@en ; skos:definition "An animal aggregation process that specifically regards cows."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://w3id.org/sumso#SuMSO_0000196 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "meat aggregator-meat system Metazoa interaction"@en ; skos:definition "An interaction that occurs among Metazoa, that are part of a meat system, of which at least one is a meat aggregator."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000197 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "meat aggregator-cow interaction"@en ; skos:definition "An interaction that occurs between at lest one meat aggregator and a cow."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://w3id.org/sumso#SuMSO_0000198 rdf:type owl:Class ; rdfs:subClassOf obo:OBI_0000011 ; rdfs:comment "Additional classes and axioms are required to represent different types of interactions, certifications, further participants and agents, and sub-activities."@en , "This class aims to be a starting point to develop a representation of the certification process along supply chains. Discussions with subject matter experts are needed. Implementation will deepen into distinguishing certification verifying, certifying and assignment. The process of certification may occur at different stages of a supply chain and may concern different activities, activity participants, items or practices. Further classes and axioms will be provided to extend this representation. Further, the relation between certification and claim will be equally explored. Similarly, more details are required to deepen the role and participation of companies in this process as well as those of organizations and people with regards to awarding and recognizing certifications."@en ; rdfs:label "certification issuance process"@en ; skos:definition "A planned process that concerns the assessment and attesting of compliance with a specified benchmark (criteria), prescribed by a certain certification, and the consequently assignment of the certification, If the specified benchmark (criteria) is met. This process may regard different stages of a supply chain, related activities, participants, items, inputs and outputs, and practices."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://www.w3id.org/sco#SCO_0000001 rdf:type owl:Class ; owl:equivalentClass _:genid1711 ; rdfs:subClassOf obo:BFO_0000015 , [ owl:intersectionOf ( obo:BFO_0000015 [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:BFO_0000015 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000167 ; owl:minQualifiedCardinality "2"^^xsd:nonNegativeInteger ; owl:onClass [ owl:intersectionOf ( obo:BFO_0000004 [ rdf:type owl:Class ; owl:complementOf obo:BFO_0000006 ] ) ; rdf:type owl:Class ] ] ) ; rdf:type owl:Class ] ; rdfs:comment """In the original definition, INO developers define this class with respect to interactors involved in the interaction process. INO includes the classes “interactor” and “interactor role” (see SeeAlso note). Here, we generalize this definition, excluding reference to interactors. In the context of SCO, we aim to provide users with an upper-level class that generally points to the involvement of material entities in an interaction process mutually influencing each other. We suggest not using this class directly but, instead, extending SCO-provided subclasses as needed. We wish users to classify interactions according to whether they occur among system components, among system environment components, or between system and system environment components. Original definition: “Interaction is a processual entity that has two or more participants (i.e., interactors) that have an effect upon one another.”"""@en ; rdfs:label "interaction"@en , "interaction"@fr , "interazione"@it ; rdfs:seeAlso """http://purl.obolibrary.org/obo/INO_0000015 http://purl.obolibrary.org/obo/INO_0000016""" ; skos:definition "A process that has at least two independent continuants (no spatial regions) as participants that have an effect upon one another."@en , "Un processo che ha almeno due continuanti indipendenti (no regioni spaziali) come partecipanti, aventi un effetto l’una sull’altra."@it , "Un processus qui a au moins deux continuants indépendants (pas de régions spatiales) comme participants, ayant un effet l’une sur l’autre."@fr ; AnnotationVocabulary:adaptedFrom "http://purl.obolibrary.org/obo/INO_0000002" ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . _:genid1711 rdf:type owl:Class ; owl:unionOf ( ) . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedTarget _:genid1711 ; rdfs:comment "This class has been restricted to those specific subclasses for the purposes of SCO."@en ] . ### https://www.w3id.org/sco#SCO_0000002 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000015 , [ owl:intersectionOf ( obo:BFO_0000015 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000167 ; owl:someValuesFrom obo:RO_0002577 ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:comment """SCO must extend its representation to (complex) system behaviors. A possible starting point may be the work of Calhau et al. (2023) and Calhau et al. (2024). Calhau, R., Sales, T. P., Almeida, J. P. A., & Guizzardi, G. (2023). Exploring system behavior in a system ontology. Int Conf Concept Model. Calhau, R. F., Prince Sales, T., Oliveira, Í., Kokkula, S., Ferreira Pires, L., Cameron, D., Guizzardi, G., & Almeida, J. P. A. (2024). A System Core Ontology for Capability Emergence Modeling. In H. A. Proper, L. Pufahl, D. Karastoyanova, M. Van Sinderen, & J. Moreira (A c. Di), Enterprise Design, Operations, and Computing (Vol. 14367, pp. 3–20). Springer Nature Switzerland. https://doi.org/10.1007/978-3-031-46587-1_1"""@en , """This class aims to be the starting point for developing a representation of system change. Future SCO implementations will provide additional classes and object properties addressing system behaviors, system processes, system scales and levels, and related themes. Related axioms must be revised accordingly.""" ; rdfs:label "développement de système"@fr , "sviluppo del sistema"@it , "system development"@en ; skos:definition "A process whose specific outcome is the progression of a system over time from an initial condition to a later condition."@en , "Un processo il cui specifico risultato è la progressione di un sistema nel tempo da una condizione iniziale a una condizione successiva."@it , "Un processus dont le résultat spécifique est la progression d’un système dans le temps, depuis une condition initiale à une condition suivante."@fr ; AnnotationVocabulary:adaptedFrom "http://purl.obolibrary.org/obo/GO_0032502" ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://www.w3id.org/sco#SCO_0000003 rdf:type owl:Class ; owl:equivalentClass _:genid1736 ; rdfs:subClassOf CommonCoreOntologies:RepresentationalInformationContentEntity , [ owl:intersectionOf ( CommonCoreOntologies:RepresentationalInformationContentEntity [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000084 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; oboInOwl:hasRelatedSynonym "indicator information" ; rdfs:label "il valore dell'indicatore"@it , "indicator value"@en , "la valeur de l’indicateur"@fr ; rdfs:seeAlso "See the comments under the corresponding \"indicator\" class."@en , """http://purl.unep.org/sdg/SDGIO_00000000 http://purl.unep.org/sdg/SDGIO_00000001 http://purl.unep.org/sdg/SDGIO_00000003""" ; skos:definition "A representational information content entity that generically depends on some indicator and is about, providing insights into, the complex system to which the indicator belongs."@en , "Un contenu représentatif d’information qui dépend de façon générique d’un indicateur et qui concerne, fournissant des indications/renseignements, sur le système complexe auquel l’indicateur appartient."@fr , "Un contenuto informativo rappresentativo che genericamente dipende da un indicatore e riguarda, fornisce informazioni sul, sistema complesso a cui l'indicatore appartiene."@it ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . _:genid1736 owl:intersectionOf ( CommonCoreOntologies:RepresentationalInformationContentEntity [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_about ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:represents ; owl:someValuesFrom ] ) ; rdf:type owl:Class . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedTarget _:genid1736 ; rdfs:comment """Discussion with subject matter experts is required to revise this axiom with regard to the “represents” object property. This was the most appropriate object property among those pertaining to OBO-Foundry and compliant ontologies to use in constructing this axiom. Nevertheless, implementations seem necessary to deepen the characterization, for instance with regard to representing and measuring the complex system of interest.. Revisions may regard adapting this object property or even further creating a new ad hoc object property. The CCO object properties “describes” and “is measurement of” appear other interesting options. http://www.ontologyrepository.com/CommonCoreOntologies/describes http://www.ontologyrepository.com/CommonCoreOntologies/is_a_measurement_of""" ] . ### https://www.w3id.org/sco#SCO_0000004 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( CommonCoreOntologies:InformationContentEntity [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_about ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf CommonCoreOntologies:InformationContentEntity , [ owl:intersectionOf ( CommonCoreOntologies:InformationContentEntity [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000084 ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( CommonCoreOntologies:InformationContentEntity [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000165 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:label "contenu informatif de la perspective"@fr , "contenuto informativo della prospettiva"@it , "perspective information content entity"@en ; skos:definition "An information content entity that generically depends on some complex system component or complex system environment component and is about the perspective (that concretizes it) of that complex system component or complex system environment component."@en , "Un contenu d’information qui dépend de façon générique d’une composante de système complexe ou d’une composant d’environnement de système complexe et qui concerne la perspective (qui le concrétise) de cette composante de système complexe ou de cette composante environnement de système complexe."@fr , "Un contenuto informativo che dipende genericamente da una componente del sistema complesso o da una componente dell'ambiente del sistema complesso e riguarda la prospettiva (che lo concretizza) di tale componente del sistema complesso o dell’ambiente del sistema complesso."@it ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000005 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( CommonCoreOntologies:InformationContentEntity [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_about ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf CommonCoreOntologies:InformationContentEntity , _:genid1766 , [ owl:intersectionOf ( CommonCoreOntologies:InformationContentEntity [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000165 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "contenu informatif de la valeur"@fr , "contenuto informativo del valore"@it , "worth information content entity"@en ; skos:definition "An information content entity that generically depends on a complex system or a complex system environment (or some part(s) of them) and is about the worth (that concretizes it) that some complex system component or complex system environment component recognizes that that complex system or complex system environment (or some part(s) of them) bearer."@en , "Un contenu d’information qui dépend de façon générique d’un système complexe ou de l’environnement de système complexe (ou une ou plus parties de ceux-ci) et qui concerne la valeur (qui le concrétise) qu’une composante de système complexe ou de son environnement reconnaît d’avoir à ce système complexe-là ou à ce-t-environnement de système complexe-là (ou une ou plus parties de celux-ci)."@fr , "Un contenuto informativo che dipende genericamente dal sistema complesso o dall'ambiente del sistema complesso (o una o più parti di essi) e riguarda il valore (che lo concretizza) che una componente del sistema complesso del suo ambiente riconosce di avere a quel sistema complesso o ambiente del sistema complesso (o una o più parti di essi)."@it ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . _:genid1766 owl:intersectionOf ( CommonCoreOntologies:InformationContentEntity [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000084 ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty rdfs:subClassOf ; owl:annotatedTarget _:genid1766 ; rdfs:comment "To amend this axiom in case worth is associated with some object aggregate that is part of the complex system or complex system environment of interest. To extend this axiom to also cover the \"object aggregate\" class." ] . ### https://www.w3id.org/sco#SCO_0000006 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000040 , [ owl:intersectionOf ( obo:BFO_0000040 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000110 ; owl:someValuesFrom obo:BFO_0000040 ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:BFO_0000040 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000110 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:BFO_0000040 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002163 ; owl:someValuesFrom obo:RO_0002577 ] ) ; rdf:type owl:Class ] ; oboInOwl:hasExactSynonym "system context" ; rdfs:comment "See the comment under the \"system\" class."@en , """We envision discussions with subject matter experts regarding whether the current SCO representation of system-system component (and related environment) parthood is suitable or whether a proper parthood-based representation is more adequate. Insights for discussion may be found in Calhau et al. (2024) and Ubbiali et al. (2024). Calhau, R. F., Prince Sales, T., Oliveira, Í., Kokkula, S., Ferreira Pires, L., Cameron, D., Guizzardi, G., & Almeida, J. P. A. (2024). A System Core Ontology for Capability Emergence Modeling. In H. A. Proper, L. Pufahl, D. Karastoyanova, M. Van Sinderen, & J. Moreira (A c. Di), Enterprise Design, Operations, and Computing (Vol. 14367, pp. 3–20). Springer Nature Switzerland. https://doi.org/10.1007/978-3-031-46587-1_1 Ubbiali, G. A., Borghini, A., & Lange, M. C. (2024). Ontologies for Sustainability: Theoretical Challenges. https://doi.org/10.31219/osf.io/z8uqr"""@en ; rdfs:label "ambiente del sistema"@it , "environnement de système"@fr , "system environment"@en ; skos:definition "A material entity that surrounds and is distinct and disjoint from a system."@en , "Un'entità materiale che circonda ed è distinta e disgiunta da un sistema."@it , "Une entité matérielle qui entourne et qui est distincte et disjointe d’un système."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty rdfs:comment ; owl:annotatedTarget """We envision discussions with subject matter experts regarding whether the current SCO representation of system-system component (and related environment) parthood is suitable or whether a proper parthood-based representation is more adequate. Insights for discussion may be found in Calhau et al. (2024) and Ubbiali et al. (2024). Calhau, R. F., Prince Sales, T., Oliveira, Í., Kokkula, S., Ferreira Pires, L., Cameron, D., Guizzardi, G., & Almeida, J. P. A. (2024). A System Core Ontology for Capability Emergence Modeling. In H. A. Proper, L. Pufahl, D. Karastoyanova, M. Van Sinderen, & J. Moreira (A c. Di), Enterprise Design, Operations, and Computing (Vol. 14367, pp. 3–20). Springer Nature Switzerland. https://doi.org/10.1007/978-3-031-46587-1_1 Ubbiali, G. A., Borghini, A., & Lange, M. C. (2024). Ontologies for Sustainability: Theoretical Challenges. https://doi.org/10.31219/osf.io/z8uqr"""@en ; rdfs:seeAlso "See also comments to https://www.w3id.org/sco/sco-u#SCO_0000056"@en ] . ### https://www.w3id.org/sco#SCO_0000007 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000167 ; owl:minQualifiedCardinality "2"^^xsd:nonNegativeInteger ; owl:onClass ] ) ; rdf:type owl:Class ] ; owl:disjointWith , ; oboInOwl:hasRelatedSynonym "relation among system components, interconnection among system components" ; rdfs:label "Interaction entre les composantes de système"@fr , "interaction among system components"@en , "interazione tra le componenti del sistema"@it ; skos:definition "An interaction that occurs among at least two system components."@en , "Une interaction qui se produit entre au moins deux composantes de système."@fr , "Un’interazione che avviene tra almeno due componenti del sistema."@it ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000008 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000167 ; owl:minQualifiedCardinality "2"^^xsd:nonNegativeInteger ; owl:onClass ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; oboInOwl:hasRelatedSynonym "relation among system environment components, interconnection among system environment components"@en ; rdfs:label "interaction among system environment components"@en , "interaction entre les composantes de l’environnement de système"@fr , "interazione tra le componenti dell’ambiente di sistema"@it ; skos:definition "An interaction that occurs among at least two system environment components."@en , "Une interaction qui se produit entre au moins deux composantes de l’environnement d’un système."@fr , "Un’interazione che avviene tra almeno due componenti dell’ambiente di un sistema."@it ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000009 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000167 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000167 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] ; oboInOwl:hasRelatedSynonym "relation between system components and the system environment, interconnection between system components and the system environment" ; rdfs:label "Interaction entre les composantes de système et les composantes de l’environnement de système"@fr , "interaction between system components and system environment components"@en , "interazione tra le componenti del sistema e le componenti de l'ambiente del sistema"@it ; skos:definition "An interaction that occurs between at least one system component and one system environment component where the latter belongs to the system environment of the system to which the system component belongs."@en , "Une interaction qui se produit entre au moins une composante d’un système et au moins une composante de l’environnement du système auquel la composante de système appartient."@fr , "Un’interazione che avviene tra almeno una componente di un sistema e almeno un componente dell’ ambiente del sistema a cui la componente del sistema appartiene."@it ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000010 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000167 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:label "complex system development"@en , "développement de système complexe"@fr , "sviluppo del sistema complesso"@it ; skos:definition "Le développement d’un système complexe."@fr , "Lo sviluppo di un sistema complesso."@it , "The system development of a complex system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://www.w3id.org/sco#SCO_0000011 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:BFO_0000182 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000184 ; owl:someValuesFrom obo:RO_0002577 ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000184 ; owl:allValuesFrom obo:RO_0002577 ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:BFO_0000182 ; rdfs:label "historie de système"@fr , "storia del sistema"@it , "system history"@en ; skos:definition "La storia di un sistema."@it , "L’histoire d’un système."@fr , "The history of a system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000012 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000110 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002163 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; oboInOwl:hasExactSynonym "complex system context" ; rdfs:label "ambiente del sistema complesso"@it , "complex system environment"@en , "environnement de système complexe"@fr ; skos:definition "A system environment that surrounds and is distinct and disjoint from a complex system."@en , "Un ambiente del sistema che circonda ed è distinto e disgiunto da un sistema complesso."@it , "Un environnement de système qui entourne et qui est distinct et disjoint d’un système complexe."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://www.w3id.org/sco#SCO_0000013 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:BFO_0000040 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom obo:RO_0002577 ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:BFO_0000040 , [ owl:intersectionOf ( obo:BFO_0000040 [ rdf:type owl:Class ; owl:complementOf ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; oboInOwl:hasExactSynonym "system element" ; oboInOwl:hasRelatedSynonym "system variable" ; rdfs:comment """Despite minor differences, SCO representation of systems and related architecture and composition is compatible with that of the System Core Ontology (Calhau et al., 2024). The system Core Ontology centers on socio-techno systems, primarily pointing to an intention/goal-directed representation of these systems. SCO representation, instead, adopts a more neutral modeling approach for complex systems, seeking to account for a wider range of systems. SCO is also more compact than the system Core Ontology. This is, however, adequate for the current purposes of SCO. We envision employing the system Core Ontology as a starting point to extend SCO representation of system architecture, situations, properties, and functions. We also envision possible alignments and reciprocal implementations between these two ontologies. Calhau, R. F., Prince Sales, T., Oliveira, Í., Kokkula, S., Ferreira Pires, L., Cameron, D., Guizzardi, G., & Almeida, J. P. A. (2024). A System Core Ontology for Capability Emergence Modeling. In H. A. Proper, L. Pufahl, D. Karastoyanova, M. Van Sinderen, & J. Moreira (A c. Di), Enterprise Design, Operations, and Computing (Vol. 14367, pp. 3–20). Springer Nature Switzerland. https://doi.org/10.1007/978-3-031-46587-1_1 Ubbiali, G. A., Borghini, A., & Lange, M. C. (2024). Ontologies for Sustainability: Theoretical Challenges. https://doi.org/10.31219/osf.io/z8uqr"""@en , """We envision discussions with subject matter experts regarding whether the current SCO representation of system-system component (and related environment) parthood is suitable or whether a proper parthood-based representation is more adequate. Insights for discussion may be found in Calhau et al. (2024) and Ubbiali et al. (2024). Calhau, R. F., Prince Sales, T., Oliveira, Í., Kokkula, S., Ferreira Pires, L., Cameron, D., Guizzardi, G., & Almeida, J. P. A. (2024). A System Core Ontology for Capability Emergence Modeling. In H. A. Proper, L. Pufahl, D. Karastoyanova, M. Van Sinderen, & J. Moreira (A c. Di), Enterprise Design, Operations, and Computing (Vol. 14367, pp. 3–20). Springer Nature Switzerland. https://doi.org/10.1007/978-3-031-46587-1_1 Ubbiali, G. A., Borghini, A., & Lange, M. C. (2024). Ontologies for Sustainability: Theoretical Challenges. https://doi.org/10.31219/osf.io/z8uqr"""@en ; rdfs:label "componente del sistema"@it , "composante de système"@fr , "system component"@en ; skos:definition "A material entity that belongs to a system."@en , "Un'entità materiale che appartiene a un sistema."@it , "Une entité matérielle qui appartient à un système."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty rdfs:comment ; owl:annotatedTarget """We envision discussions with subject matter experts regarding whether the current SCO representation of system-system component (and related environment) parthood is suitable or whether a proper parthood-based representation is more adequate. Insights for discussion may be found in Calhau et al. (2024) and Ubbiali et al. (2024). Calhau, R. F., Prince Sales, T., Oliveira, Í., Kokkula, S., Ferreira Pires, L., Cameron, D., Guizzardi, G., & Almeida, J. P. A. (2024). A System Core Ontology for Capability Emergence Modeling. In H. A. Proper, L. Pufahl, D. Karastoyanova, M. Van Sinderen, & J. Moreira (A c. Di), Enterprise Design, Operations, and Computing (Vol. 14367, pp. 3–20). Springer Nature Switzerland. https://doi.org/10.1007/978-3-031-46587-1_1 Ubbiali, G. A., Borghini, A., & Lange, M. C. (2024). Ontologies for Sustainability: Theoretical Challenges. https://doi.org/10.31219/osf.io/z8uqr"""@en ; rdfs:seeAlso "See also comments to https://www.w3id.org/sco/sco-u#SCO_0000056"@en ] . ### https://www.w3id.org/sco#SCO_0000014 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:BFO_0000040 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:BFO_0000040 , [ owl:intersectionOf ( obo:BFO_0000040 [ rdf:type owl:Class ; owl:complementOf ] ) ; rdf:type owl:Class ] ; oboInOwl:hasExactSynonym "system environment element" ; oboInOwl:hasRelatedSynonym "system environment variable" ; rdfs:comment """We envision discussions with subject matter experts regarding whether the current SCO representation of system-system component (and related environment) parthood is suitable or whether a proper parthood-based representation is more adequate. Insights for discussion may be found in Calhau et al. (2024) and Ubbiali et al. (2024). Calhau, R. F., Prince Sales, T., Oliveira, Í., Kokkula, S., Ferreira Pires, L., Cameron, D., Guizzardi, G., & Almeida, J. P. A. (2024). A System Core Ontology for Capability Emergence Modeling. In H. A. Proper, L. Pufahl, D. Karastoyanova, M. Van Sinderen, & J. Moreira (A c. Di), Enterprise Design, Operations, and Computing (Vol. 14367, pp. 3–20). Springer Nature Switzerland. https://doi.org/10.1007/978-3-031-46587-1_1 Ubbiali, G. A., Borghini, A., & Lange, M. C. (2024). Ontologies for Sustainability: Theoretical Challenges. https://doi.org/10.31219/osf.io/z8uqr"""@en ; rdfs:label "componente dell' ambiente del systema"@it , "composante de l'environnement de système"@fr , "system environment component"@en ; skos:definition "A material entity that belongs to a system environment."@en , "Un'entità materiale che appartiene all’ambiente di un sistema."@it , "Une entité matérielle qui appartient à l’environnement d’un système."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . [ rdf:type owl:Axiom ; owl:annotatedSource ; owl:annotatedProperty rdfs:comment ; owl:annotatedTarget """We envision discussions with subject matter experts regarding whether the current SCO representation of system-system component (and related environment) parthood is suitable or whether a proper parthood-based representation is more adequate. Insights for discussion may be found in Calhau et al. (2024) and Ubbiali et al. (2024). Calhau, R. F., Prince Sales, T., Oliveira, Í., Kokkula, S., Ferreira Pires, L., Cameron, D., Guizzardi, G., & Almeida, J. P. A. (2024). A System Core Ontology for Capability Emergence Modeling. In H. A. Proper, L. Pufahl, D. Karastoyanova, M. Van Sinderen, & J. Moreira (A c. Di), Enterprise Design, Operations, and Computing (Vol. 14367, pp. 3–20). Springer Nature Switzerland. https://doi.org/10.1007/978-3-031-46587-1_1 Ubbiali, G. A., Borghini, A., & Lange, M. C. (2024). Ontologies for Sustainability: Theoretical Challenges. https://doi.org/10.31219/osf.io/z8uqr"""@en ; rdfs:seeAlso "See also comments to https://www.w3id.org/sco/sco-u#SCO_0000056"@en ] . ### https://www.w3id.org/sco#SCO_0000015 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:RO_0002577 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000086 ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:RO_0002577 , [ owl:intersectionOf ( obo:RO_0002577 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000110 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:RO_0002577 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000111 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:RO_0002577 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000166 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:RO_0002577 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000185 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000185 ; owl:allValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:RO_0002577 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000211 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:RO_0002577 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:RO_0002577 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:RO_0002577 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:RO_0002577 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:RO_0002577 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0002163 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; obo:IAO_0000119 "Ubbiali, G. A., Borghini, A., & Lange, M. C. (2024). Ontologies for Sustainability: Theoretical Challenges. https://doi.org/10.31219/osf.io/z8uqr"@en ; oboInOwl:hasNarrowSynonym "socio-ecological system, social-ecological system" ; rdfs:label "complex system"@en , "sistema complesso"@it , "système complexe"@fr ; rdfs:seeAlso """IOBC: http://purl.jp/bio/4/id/200906033993517889 IOBC: http://purl.jp/bio/4/id/201406059151625127 EnvThes: http://vocabs.lter-europe.net/EnvThes/21908 I2SV: https://i2insights.org/index/integration-and-implementation-sciences-vocabulary#complex-systems""" ; skos:definition "A system whose system components interact dynamically and nonlinearly, causing the emergence of a collective nontrivial and self-organized behavior. No internal/external centralized controls are required."@en , "Un sistema le cui componenti interagiscono dinamicamente e non linearmente, causando l’emergere di un comportamento collettivo, non banale e auto-organizzato. Non è richiesto nessun controllo centralizzato, né interno né esterno."@it , "Un système dont les composantes interagissent dynamiquement et non linéairement, causant l’émergence d’un comportement collectif, non trivial et auto-organisé. Aucun contrôle interne ou externe centralisé n’est requis."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000016 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000016 , [ owl:intersectionOf ( obo:BFO_0000016 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000164 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:BFO_0000016 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:BFO_0000016 [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_subject_of ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "SCO currently accounts for perspectives of complex system components and complex system environment components because the focus of this ontology is on complex systems. Future versions of this ontology may explore extending reference more broadly to systems."@en ; rdfs:label "perspective"@en , "perspective"@fr , "prospettiva"@it ; rdfs:seeAlso ; skos:definition "A disposition whose realization leads the complex system component or the complex system environment component to (re)position itself within and regarding the complex system or complex system environment it belongs to (or a part of it) and possibly act accordingly."@en , "Una disposizione la cui realizzazione porta la componente del sistema complesso o la componente dell’ambiente del sistema complesso a (ri)posizionarsi nel e rispetto al sistema complesso o all’ ambiente del sistema complesso a cui appartiene (o parte di esso) ed eventualmente ad agire di conseguenza."@it , "Une disposition dont la réalisation conduit la composante de système complexe ou la composante de l’environnement du système complexe à se (re)positionner dans et par rapport au système complexe ou à l’environnement du système complexe auquel elle appartient (ou d’une partie de celui-ci) et, éventuellement, à agir en conséquence."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000017 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000023 , [ owl:intersectionOf ( obo:BFO_0000023 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "To distinguish and account for indicators according to the perspectives of different complex systems (and environment) components, we suggest proceeding following the indications provided under the “according to the perspective” annotation property. In this case, regarding the subclasses to create, we recommend establishing axioms restricting to this class." ; rdfs:label "indicateur (rôle)"@fr , "indicator-role"@en , "ruolo di indicatore"@it ; rdfs:seeAlso "See the comments under the corresponding \"indicator\" class."@en ; skos:definition "A role whose realization leads the complex system component to be recognized as a carrier of an indicator value, by some complex system component or complex system environment component according to its/their perspective."@en , "Un rôle dont la réalisation conduit la composante de système complexe à être reconnu comme porteuse d’une valeur de l’indicateur, par quelque composante de système complexe ou de son l’environnement, selon sa/leur propre perspective."@fr , "un ruolo la cui realizzazione porta la componente del sistema complesso ad essere riconosciuto come portatore di un valore dell’indicatore, da parte di qualche componente del sistema complesso o del suo ambiente, secondo la propria prospettiva."@it ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://www.w3id.org/sco#SCO_0000018 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000023 , [ owl:intersectionOf ( obo:BFO_0000023 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000081 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "ruolo di parte interessata (stakeholder)"@it , "rôle de partie prenante (stakeholder)"@fr , "stakeholder-role"@en ; skos:definition "A role whose realization leads the complex system component to be recognized as a bearer, in the belonging complex system, of at least one role (different from the role of stakeholder) and/or disposition (primarily a disposition to benefit/be damaged as being part of that complex system)."@en , "Un ruolo la cui realizzazione porta la componente del sistema complesso ad essere riconosciuta come detentrice, nel sistema complesso a cui appartiene, di almeno un ruolo (diverso dal ruolo di stakeholder) e/o disposizione (in primo luogo una predisposizione a beneficiare/essere danneggiata in quanto parte di tale sistema complesso)."@it , "Un rôle dont la réalisation conduit la composante du système complexe à être reconnue, dans le système complexe auquel elle appartient, comme porteuse d’au moins un rôle (différent du rôle de partie prenante) et/ou d’une disposition (principalement une disposition à bénéficier ou à être endommagé parce qu’elle fait partie de ce système complexe)."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000019 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000023 , [ owl:intersectionOf ( obo:BFO_0000023 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000164 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( obo:BFO_0000023 [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_subject_of ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; oboInOwl:hasRelatedSynonym "value" ; rdfs:comment "Due to the SCO focus on complex systems, the worth-role class have been designed referring specifically to complex systems. Nevertheless, future implementations may broaden the space of application to also systems. Implementations may equally deepen this representation, detailing and elucidating the distinction and connection between worth and value(s)." , "To distinguish and account for what is considered worthy of value for different complex systems (and environment) components according to proper perspectives,we suggest proceeding following the indications provided under the “according to the perspective” annotation property. In this case, regarding the subclasses to create, we recommend establishing axioms restricting to this class." ; rdfs:label "Valeur (sens donner de la valeur)"@fr , "valore (senso dare valore)"@it , "worth-role"@en ; rdfs:seeAlso """(related) http://humanbehaviourchange.org/ontology/BCIO_006063""" , "https://bio.scai.fraunhofer.de/ontology/epilepsy#worthiness" ; skos:definition "A role whose realization leads the complex system or the complex system environment (or some part(s) of them) to be recognized to bearer relevance by some complex system component or complex system environment component according to its/their perspective."@en , "Un ruolo la cui realizzazione porta il sistema complesso o l'ambiente del sistema complesso (o una o più delle parti di essi) ad essere riconosciuto come rilevante da parte di qualche componente del sistema complesso o del suo ambiente, secondo la propria prospettiva."@it , "Un rôle dont la réalisation conduit le système complexe ou l’environnement de système complexe (ou une ou plus parties de ceux-ci) à être reconnu comme significatif par quelque composante de système complexe ou de son l’environnement, selon sa/leur propre perspective."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000020 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000167 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000167 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] ; owl:disjointWith , ; oboInOwl:hasRelatedSynonym "relation between complex system components and complex system environment components, interconnection between complex system components and complex system environment components" ; rdfs:label "Interaction entre les composantes de système complexe et les composantes de environnement de système complexe"@fr , "interaction between complex system components and complex system environment components"@en , "interazione tra le componenti del sistema complesso e le componenti dell’ambiente del sistema complesso"@it ; skos:definition "An interaction that occurs between at least one complex system component and one complex system environment component where the latter belongs to the complex system environment of the complex system to which the complex system component belongs."@en , "Une interaction qui se produit entre au moins une composante d’un système complexe et au moins une composante de l’environnement du système complexe auquel la composante de système complexe appartient."@fr , "Un’interazione che avviene tra almeno una componente di un sistema complesso e almeno una componente dell’ambiente del sistema complesso a cui la componente del sistema complesso appartiene."@it ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000021 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000167 ; owl:minQualifiedCardinality "2"^^xsd:nonNegativeInteger ; owl:onClass ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; oboInOwl:hasRelatedSynonym "relation among complex system environment components, interconnection among complex system environment components"@en ; rdfs:label "interaction among complex system environment components"@en , "interaction entre les composants de l’environnement de système complexe"@fr , "interazione tra le componenti dell’ambiente di sistema complesso"@it ; skos:definition "An interaction that occurs among at least two complex system environment components."@en , "Une interaction qui se produit entre au moins deux composantes de l’environnement d’un système complexe."@fr , "Un’interazione che avviene tra almeno due componenti dell’ambiente di un sistema complesso."@it ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000022 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000167 ; owl:minQualifiedCardinality "2"^^xsd:nonNegativeInteger ; owl:onClass ] ) ; rdf:type owl:Class ] ; oboInOwl:hasRelatedSynonym "relation among complex system components, interconnection among complex system components" ; rdfs:label "Interaction entre les composantes de système complexe"@fr , "interaction among complex system components"@en , "interazione tra le componenti del sistema complesso"@it ; skos:definition "An interaction that occurs among at least two system components of a complex system."@en , "Une interaction qui se produit entre au moins deux composantes de système d’un système complexe."@fr , "Un’interazione che avviene tra almeno due componenti del sistema di un sistema complesso."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000023 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000184 ; owl:someValuesFrom ] [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000184 ; owl:allValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "complex system history"@en , "historie de système complexe"@fr , "storia del sistema complesso"@it ; skos:definition "La storia del sistema di un sistema complesso."@it , "L’historique de système d’un système complexe."@fr , "The system history of a complex system."@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000024 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( obo:BFO_0000146 [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000137 ; owl:someValuesFrom obo:RO_0002577 ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf obo:BFO_0000146 ; rdfs:comment AnnotationVocabulary:Released , "Future SCO implementations may deal with representing system environment boudaries." ; rdfs:label "confine del sistema"@it , "frontière de système"@fr , "system boundary"@en ; skos:definition "A fiat surface of a system."@en , "Una superficie fiat di un sistema."@it , "Une surface fiat d’un système."@fr . ### https://www.w3id.org/sco#SCO_0000025 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000028 ; rdfs:comment "Future SCO implementations may consider including classes also covering spatial region for the system environment." ; rdfs:label "regione spaziale del sistema"@it , "région d’espace de système"@fr , "system spatial region"@en ; skos:definition "A three-dimensional spatial region of a system."@en , "Una regione di spazio tridimensionale di un sistema."@it , "Une région d’espace tridimensionnelle d’un système."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000026 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000101 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; oboInOwl:hasExactSynonym "complex system environment element" , "complex system environment variable" ; rdfs:label "complex system environment component"@en , "componente dell' ambiente del systema complesso"@it , "composante de l'environnement de système complexe"@fr ; skos:definition "A system evironment component that belongs to the system environment of a complex system."@en , "Una componente dell'ambiente di sistema che appartiene all’ambiente di un sistema complesso."@it , "Une composante de l'environnement de système qui appartient à l’environnement d’un système complexe."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000027 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; owl:disjointWith ; rdfs:comment """We envision revisions of the current SCO theory of agency. This is due to the limited power of explainability of present representation. A sounder and deeper interpretation of the causal role of an agent in an interaction, compared to other participants, is required. Tentative proposal: a possible direction of implementation is towards a telic vision of agency intended as end-point driven. On this more fundamental neutral vision, a second layer of representation may be constructed to model intentionality, goals, and plans in relation to agency. Here, SCO may harmonize and align with UFO-C representation. For insight for discussion see: Guarino, N., & Guizzardi, G. (2024). Processes as variable embodiments. Synthese, 203(4), 104. https://doi.org/10.1007/s11229-024-04505-2 Guizzardi, G., de Almeida Falbo, R., & Guizzardi, R. (2008). Grounding software domain ontologies in the unified foundational ontology (UFO): The case of the ODE. Memorias de la XI Conferencia Iberoamericana de Software Engineering (CIbSE 2008), Recife, Pernambuco, Brasil, February 13-17, 2008, 127–140."""@en ; rdfs:label "agent de l’environnement de système"@fr , "agente dell’ambiente del sistema"@it , "system environnement agent"@en ; rdfs:seeAlso , , "comments to https://www.w3id.org/sco/sco-u#SCO_0000027 and https://www.w3id.org/sco/sco-u#SCO_0000029"@en , "See information under the \"has agent at t\" property." ; skos:definition "A system environment component that is an agent in an interaction among system environment components or in an interaction between system components and system environment components."@en , "Una componente dell’ambiente del sistema che è un agente in un'interazione tra le componenti dell'ambiente del sistema o in un'interazione tra componenti del sistema e le componenti dell'ambiente del sistema."@it , "Une composante de l’environnement de système qui est un agent dans une interaction entre les composantes de l’environnement du système ou dans une interaction entre les composantes de système et les composants de l’environnement de système."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://www.w3id.org/sco#SCO_0000028 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000176 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000101 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; oboInOwl:hasExactSynonym "complex system element" ; oboInOwl:hasRelatedSynonym "complex system variable" ; rdfs:label "complex system component"@en , "componente del sistema complesso"@it , "composante de système complexe"@fr ; skos:definition "A system component that belongs to a complex system."@en , "Una componente del sistema che appartiene a un sistema complesso."@it , "Une composante de système qui appartient à un système complexe."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000029 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:comment """We envision revisions of the current SCO theory of agency. This is due to the limited power of explainability of present representation. A sounder and deeper interpretation of the causal role of an agent in an interaction, compared to other participants, is required. Tentative proposal: a possible direction of implementation is towards a telic vision of agency intended as end-point driven. On this more fundamental neutral vision, a second layer of representation may be constructed to model intentionality, goals, and plans in relation to agency. Here, SCO may harmonize and align with UFO-C representation. For insight for discussion see: Guarino, N., & Guizzardi, G. (2024). Processes as variable embodiments. Synthese, 203(4), 104. https://doi.org/10.1007/s11229-024-04505-2 Guizzardi, G., de Almeida Falbo, R., & Guizzardi, R. (2008). Grounding software domain ontologies in the unified foundational ontology (UFO): The case of the ODE. Memorias de la XI Conferencia Iberoamericana de Software Engineering (CIbSE 2008), Recife, Pernambuco, Brasil, February 13-17, 2008, 127–140."""@en ; rdfs:label "agent de système"@fr , "agente del sistema"@it , "system agent"@en ; rdfs:seeAlso , , "comments to https://www.w3id.org/sco/sco-u#SCO_0000027 and https://www.w3id.org/sco/sco-u#SCO_0000029"@en , "See information under the \"has agent at t\" property." ; skos:definition "A system component that is an agent in an interaction among system components or in an interaction between system components and system environment components."@en , "Una componente di sistema che è un agente in un'interazione tra le componenti del sistema o in un'interazione tra le componenti di sistema e le componenti dell'ambiente di sistema."@it , "Une composante de système qui est un agent dans une interaction entre les composantes de l’environnement du système ou dans une interaction entre les composantes de système et les composants de l’environnement de système."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://www.w3id.org/sco#SCO_0000030 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000092 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000164 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_subject_of ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; oboInOwl:hasExactSynonym "complex system stakeholder perspective, system stakeholder perspective" ; rdfs:label "Prospettiva di parte interessata (stakeholder)"@it , "perspective de partie prenante (stakeholder)"@fr , "stakeholder perspective"@en ; skos:definition "A perspective that is bearered by a stakeholder."@en , "Una prospettiva che è detenuta da una parte interessata (stakeholder)."@it , "Une perspective qui est détenue par une partie prenante (stakeholder)."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000031 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000137 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "complex system boundary"@en , "confine del sistema complesso"@it , "frontière de système complexe"@fr ; skos:definition "A system boundary of a complex system."@en , "Un confine del sistema di un sistema complesso."@it , "Une frontière de système d’un système complexe."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000032 rdf:type owl:Class ; rdfs:subClassOf ; rdfs:label "complex system spatial region"@en , "regione spaziale del sistema complesso"@it , "région d’espace de système complexe"@fr ; skos:definition "A system spatial region of a complex system."@en , "Una regione di spazio del sistema di un sistema complesso."@it , "Une région d’espace de système d’un système complexe."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000033 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; owl:disjointWith ; rdfs:label "agent de l’environnement de système complexe"@fr , "agente dell’ambiente del sistema complesso"@it , "complex system environment agent"@en ; rdfs:seeAlso , , "See information under the \"has agent at t\" property." ; skos:definition "A complex system environment component that is an agent in an interaction among complex system environment components or in an interaction between complex system components and complex system environment components."@en , "Una componente dell’ambiente del sistema complesso che è un agente in un'interazione tra componenti dell’ambiente del sistema complesso o in un'interazione tra le componenti del sistema complesso e le componenti dell’ambiente del sistema complesso."@it , "Une composante de l’environnement de système complexe qui est un agent dans une interaction entre les composantes de l’environnement de système complexe ou dans une interaction entre les composantes de système complexe et les composantes de l’environnement de système complexe."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000034 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty ; owl:someValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] [ rdf:type owl:Restriction ; owl:onProperty ; owl:allValuesFrom [ rdf:type owl:Class ; owl:unionOf ( ) ] ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf ; rdfs:label "agent de système complexe"@fr , "agente del sistema complesso"@it , "complex system agent"@en ; rdfs:seeAlso , , "See information under the \"has agent at t\" property." ; skos:definition "A complex system component that is an agent in an interaction among complex system components or in an interaction between complex system components and complex system environment components."@en , "Una componente del sistema complesso che è un agente in un'interazione tra le componenti del sistema complesso o in un'interazione tra le componenti del sistema complesso e le componenti dell’ambiente del sistema complesso."@it , "Une composante de système complexe qui est un agent dans une interaction entre les composantes de système complexe ou dans une interaction entre les composantes de système complexe et les composantes de l’environnement de système complexe."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000035 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000220 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:represented_by ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; oboInOwl:hasExactSynonym "complex system indicator"@en ; oboInOwl:hasRelatedSynonym "system indicator"@en ; rdfs:comment "SCO indicator classes have been designed referring to the characterization of sustainable development indicators (SDGs indicators) proposed by SDGIO. we aimed to deepen this characterization and establish upper-level classes for SDGIO ones."@en , "Due to the SCO focus on complex systems, indicator classes have been designed referring specifically to complex systems. Nevertheless, future implementations may broaden the space of application to also systems." ; rdfs:label "indicateur"@fr , "indicator"@en , "indicatore"@it ; rdfs:seeAlso "http://purl.unep.org/sdg/SDGIO_00000002" ; skos:definition "A complex system component with an indicator role."@en , "Una componente del sistema complesso con un ruolo d’indicatore."@it , "Une composante de système complexe ayant un rôle d’indicateur."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://www.w3id.org/sco#SCO_0000036 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000087 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000101 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000091 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; oboInOwl:hasExactSynonym "complex system stakeholder, system stakeholder" ; rdfs:label "parte interessata (stakeholder)"@it , "partie prenante (stakeholder)"@fr , "stakeholder"@en ; skos:definition "A complex system component with a stakeholder role."@en , "Una componente del sistema complesso con un ruolo di stakeholder."@it , "Une composante du système complexe avec un rôle de partie prenante."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000040 rdf:type owl:Class ; owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty CommonCoreOntologies:is_about ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:subClassOf , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000084 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] , [ owl:intersectionOf ( [ rdf:type owl:Restriction ; owl:onProperty obo:BFO_0000165 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:label "contenu informatif de la perspective de partie prenante (stakeholder)"@fr , "contenuto informativo della prospettiva di parte interessata (stakeholder)"@it , "stakeholder perspective information content entity"@en ; skos:definition "A perspective information content entity of a stakeholder perspective."@en , "Un contenu informatif de la perspective d’une perspective de partie prenante (stakeholder)."@fr , "Un contenuto informativo della prospettiva di una prospettiva di parte interessata (stakeholder)."@it ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000041 rdf:type owl:Class ; rdfs:subClassOf obo:BFO_0000020 ; rdfs:comment "Do not use this class directly. This class is constructed as a grouping for complex system properties, such as emergence and self-organization, in order to facilitate class retrieval and visualization." ; rdfs:label "complex system property"@en , "proprietà del systema complesso"@it ; skos:definition "propriété de système complexe"@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Released . ### https://www.w3id.org/sco#SCO_0000042 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( obo:BFO_0000019 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000080 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; owl:disjointWith ; rdfs:comment """A more extensive representation of emergence is required. A possible starting point may be the work of Calhau et al. (2024). Calhau, R. F., Prince Sales, T., Oliveira, Í., Kokkula, S., Ferreira Pires, L., Cameron, D., Guizzardi, G., & Almeida, J. P. A. (2024). A System Core Ontology for Capability Emergence Modeling. In H. A. Proper, L. Pufahl, D. Karastoyanova, M. Van Sinderen, & J. Moreira (A c. Di), Enterprise Design, Operations, and Computing (Vol. 14367, pp. 3–20). Springer Nature Switzerland. https://doi.org/10.1007/978-3-031-46587-1_1"""@en , "This class should be amended according to SCO implementations regarding system scales, levels, and change." ; rdfs:label "emergence"@en , "emergenza (proprietà emergenti)"@it , "émergence (propriété émergentes"@fr ; skos:definition "A quality that inherits in a complex system by virtue of how the complex system behavior and properties at a macroscopic level are nontrivially envisaged from those at a more microscopic one."@en , "Una qualità che il sistema complesso esibisce in virtù del fatto che il comportamento del sistema complesso e le sue proprietà a un livello macroscopico sono non-trivialmente predicibili da quelli a livello più microscopico."@it , "Une qualité qu’un système complexe exhibe en vertu du fait que le comportement du système complexe et ses propriétés à un niveau macroscopique sont non-trivialement prédictibles à partir de ceux aux niveaux plus microscopiques."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ### https://www.w3id.org/sco#SCO_0000043 rdf:type owl:Class ; rdfs:subClassOf , [ owl:intersectionOf ( obo:BFO_0000019 [ rdf:type owl:Restriction ; owl:onProperty obo:RO_0000080 ; owl:someValuesFrom ] ) ; rdf:type owl:Class ] ; rdfs:comment "This class should be amended according to SCO implementations regarding system scales, levels, and change." ; rdfs:label "auto-organisation"@fr , "auto-organizzazione"@it , "self-organization"@en ; skos:definition "A quality that inherits in a complex system by virtue of how the complex system components spontaneously arrange, globally generating macroscopic and microscopic structures and behaviors, without any internal and/or external controls."@en , "Una qualità che il sistema complesso esibisce in virtù del fatto che le componenti del sistema complesso si organizzino spontaneamente, generando globalmente strutture e comportamenti macroscopici e microscopici, senza alcun controllo interno e/o esterno."@it , "Une qualité qu’un système complexe exhibe en vertu du fait que les composantes du système complexe s’organisent spontanément, générant globalement des structures et comportements macroscopiques et microscopiques, sans aucun contrôle interne et/ou externe."@fr ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . ################################################################# # Individuals ################################################################# ### http://purl.obolibrary.org/obo/IAO_0000122 obo:IAO_0000122 rdf:type owl:NamedIndividual ; obo:IAO_0000111 "ready for release"@en ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "Class has undergone final review, is ready for use, and will be included in the next release. Any class lacking \"ready_for_release\" should be considered likely to change place in hierarchy, have its definition refined, or be obsoleted in the next release. Those classes deemed \"ready_for_release\" will also derived from a chain of ancestor classes that are also \"ready_for_release.\""@en ; rdfs:label "ready for release"@en . ### http://purl.obolibrary.org/obo/IAO_0000125 obo:IAO_0000125 rdf:type owl:NamedIndividual ; obo:IAO_0000111 "pending final vetting"@en ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "All definitions, placement in the asserted IS_A hierarchy and required minimal metadata are complete. The class is awaiting a final review by someone other than the term editor."@en ; rdfs:label "pending final vetting"@en . ### https://spec.industrialontologies.org/ontology/core/meta/AnnotationVocabulary/Provisional AnnotationVocabulary:Provisional rdf:type owl:NamedIndividual , AnnotationVocabulary:MaturityLevel ; rdfs:label "provisional"@en-us ; skos:definition "construct or ontology development state in which content is subject to change and may change considerably"@en-us ; AnnotationVocabulary:explanatoryNote "IOF users should be aware that the resource is not dependable, but can be used for reference and for further work."@en-us . ### https://spec.industrialontologies.org/ontology/core/meta/AnnotationVocabulary/Released AnnotationVocabulary:Released rdf:type owl:NamedIndividual , AnnotationVocabulary:MaturityLevel ; rdfs:label "released"@en-us ; skos:definition "construct or ontology development state in which the resource is stable, usable, and has been made available to external users"@en-us ; AnnotationVocabulary:explanatoryNote "Release notes will be provided for any changes concerning released content, and any revisions will be backward compatible with the prior version to the degree possible."@en-us . ### https://w3id.org/sumso#SuMSO_0000052 rdf:type owl:NamedIndividual , ; rdfs:comment "For more details regarding the embraced perspective see also https://github.com/gioUbbiali/Sustainable-Meat-Systems-Ontology and the following publications (coming soon)."@en , "This individual instantiates the class “meat system stakeholder perspective” as we consider ourselves stakeholders of these systems."@en , "We use this individual to track our perspective in developing this ontology. We aim to disambiguate situations in which different perspectives may lead to different interpretations and organization of the ontology hierarchy, e.g. identifying the possible meat systems stakeholders."@en ; rdfs:label "SuMSO authors perspective"@en ; rdfs:seeAlso "https://www.ggrass.org/" ; owl:versionInfo "2024-09-25" ; skos:definition "The perspective of the SuMSO authors."@en . ### https://w3id.org/sumso#SuMSO_0000056 rdf:type owl:NamedIndividual , ; rdfs:comment "This individual instantiates the class “meat system stakeholder perspective” as we consider GGRASS participants stakeholders of these systems."@en , "We use this individual to track GGRASS participants' perspective in developing this ontology. We aim to disambiguate situations in which different perspectives may lead to different interpretations and organization of the ontology hierarchy, e.g. identifying the possible meat systems stakeholders."@en ; rdfs:label "GGRASS participants perspective"@en ; rdfs:seeAlso "https://www.ggrass.org/" ; owl:versionInfo "2024-09-27" ; skos:definition "The perspective of the GGRASS participants."@en . ### https://w3id.org/sumso#SuMSO_0000064 rdf:type owl:NamedIndividual , ; terms:source """https://doi.org/10.1016/0047-2727(74)90006-1 https://doi.org/10.2307/3439966 https://tannerlectures.utah.edu/_resources/documents/a-to-z/s/sen80.pdf https://doi.org/10.1093/0198287976.001.0001 https://scholar.harvard.edu/sen/publications/development-capability-expansion""" ; rdfs:comment """The Capability Approach is one of the existing theories on well-being. Currently, we included an individual instance for refering to the Capability Approach perspective on well-being. Future implementations may address including classes to represent theories, related information and their relation with the perspectives of their authors. This will support representing and integrating the Capability Approach perspective with other different views on well-being and formalizing them in terms of theories on well-being."""@en ; rdfs:label "capability approach"@en ; AnnotationVocabulary:maturity AnnotationVocabulary:Provisional . [ obo:IAO_0000412 obo:uberon.owl ] . [ obo:IAO_0000412 obo:agro.owl ] . [ owl:minQualifiedCardinality "2"^^xsd:nonNegativeInteger ] . [ owl:minQualifiedCardinality "2"^^xsd:nonNegativeInteger ] . [ owl:minQualifiedCardinality "2"^^xsd:nonNegativeInteger ] . [ owl:minQualifiedCardinality "2"^^xsd:nonNegativeInteger ] . ################################################################# # Annotations ################################################################# obo:CL_0000000 obo:IAO_0000115 "A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane." , "A material entity that has a plasma membrane and results from cellular division." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:CL_0000000 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane." ; oboInOwl:hasDbXref "CARO:mah" ] . obo:CL_0000101 obo:IAO_0000115 "Any neuron having a sensory function; an afferent neuron conveying sensory impulses." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:CL_0000101 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Any neuron having a sensory function; an afferent neuron conveying sensory impulses." ; oboInOwl:hasDbXref "ISBN:0721662544" ] . obo:CL_0000540 obo:IAO_0000115 "The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system." ; oboInOwl:hasExactSynonym "nerve cell" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:CL_0000540 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system." ; oboInOwl:hasDbXref "MESH:D009474" , "http://en.wikipedia.org/wiki/Neuron" ] . obo:COB_0001000 obo:IAO_0000115 "A process during which an organism comes into contact with another entity." . obo:ENVO_01000254 obo:IAO_0000115 "A system which has the disposition to environ one or more material entities." ; oboInOwl:hasExactSynonym "environment" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:ENVO_01000254 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "A system which has the disposition to environ one or more material entities." ; oboInOwl:hasDbXref "DOI:10.1186/2041-1480-4-43" ] . obo:ENVO_01000739 obo:IAO_0000115 "An environmental system which can sustain and allow the growth of an ecological population." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:ENVO_01000739 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "An environmental system which can sustain and allow the growth of an ecological population." ; oboInOwl:hasDbXref "EnvO:EnvO" ] . obo:GO_0003674 obo:IAO_0000115 "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs." ; oboInOwl:hasExactSynonym "molecular function" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:GO_0003674 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs." ; oboInOwl:hasDbXref "GOC:pdt" ] . obo:GO_0004842 obo:IAO_0000115 "Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y = Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages." ; oboInOwl:hasBroadSynonym "E2" , "E3" ; oboInOwl:hasNarrowSynonym "ubiquitin conjugating enzyme activity" , "ubiquitin ligase activity" , "ubiquitin protein ligase activity" , "ubiquitin protein-ligase activity" , "ubiquitin-conjugating enzyme activity" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:GO_0004842 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y = Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages." ; oboInOwl:hasDbXref "GOC:BioGRID" , "GOC:jh2" , "PMID:9635407" ] . obo:GO_0005634 obo:IAO_0000115 "A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent." ; oboInOwl:hasExactSynonym "cell nucleus" ; oboInOwl:hasNarrowSynonym "horsetail nucleus" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:GO_0005634 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent." ; oboInOwl:hasDbXref "GOC:go_curators" ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:GO_0005634 ; owl:annotatedProperty oboInOwl:hasNarrowSynonym ; owl:annotatedTarget "horsetail nucleus" ; oboInOwl:hasDbXref "GOC:al" , "GOC:mah" , "GOC:vw" , "PMID:15030757" ] . obo:GO_0008150 obo:IAO_0000115 "A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." , "A process that emerges from two or more causally-connected macromolecular activities and has evolved to achieve a biological objective." ; oboInOwl:hasExactSynonym "biological process" , "physiological process" ; oboInOwl:hasRelatedSynonym "single organism process" , "single-organism process" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:GO_0008150 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." ; oboInOwl:hasDbXref "GOC:pdt" ] . obo:GO_0016301 obo:IAO_0000115 "Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." ; oboInOwl:hasExactSynonym "phosphokinase activity" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:GO_0016301 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." ; oboInOwl:hasDbXref "ISBN:0198506732" ] . obo:GO_0019107 obo:IAO_0000115 "Catalysis of the transfer of a myristoyl (CH3-[CH2]12-CO-) group to an acceptor molecule." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:GO_0019107 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Catalysis of the transfer of a myristoyl (CH3-[CH2]12-CO-) group to an acceptor molecule." ; oboInOwl:hasDbXref "GOC:ai" ] . obo:IAO_0000002 obo:IAO_0000111 "example to be eventually removed"@en . obo:IAO_0000030 obo:IAO_0000111 "information content entity"@en . obo:IAO_0000078 obo:IAO_0000111 "curation status specification"@en ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value."@en ; obo:IAO_0000116 "Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting)"@en ; obo:IAO_0000117 "PERSON:Bill Bug"@en ; obo:IAO_0000119 "GROUP:OBI:"@en , "OBI_0000266"@en . obo:IAO_0000102 obo:IAO_0000111 "data about an ontology part"@en ; obo:IAO_0000115 "Data about an ontology part is a data item about a part of an ontology, for example a term"@en ; obo:IAO_0000117 "Person:Alan Ruttenberg"@en . obo:IAO_0000103 obo:IAO_0000111 "failed exploratory term"@en ; obo:IAO_0000115 "The term was used in an attempt to structure part of the ontology but in retrospect failed to do a good job"@en ; obo:IAO_0000117 "Person:Alan Ruttenberg"@en . obo:IAO_0000113 obo:IAO_0000111 "in branch"@en ; obo:IAO_0000115 "An annotation property indicating which module the terms belong to. This is currently experimental and not implemented yet."@en ; obo:IAO_0000117 "GROUP:OBI"@en ; obo:IAO_0000119 "OBI_0000277"@en . obo:IAO_0000120 obo:IAO_0000111 "metadata complete"@en ; obo:IAO_0000115 "Class has all its metadata, but is either not guaranteed to be in its final location in the asserted IS_A hierarchy or refers to another class that is not complete."@en . obo:IAO_0000121 obo:IAO_0000111 "organizational term"@en ; obo:IAO_0000115 "Term created to ease viewing/sort terms for development purpose, and will not be included in a release"@en . obo:IAO_0000123 obo:IAO_0000111 "metadata incomplete"@en ; obo:IAO_0000115 "Class is being worked on; however, the metadata (including definition) are not complete or sufficiently clear to the branch editors."@en . obo:IAO_0000124 obo:IAO_0000111 "uncurated"@en ; obo:IAO_0000115 "Nothing done yet beyond assigning a unique class ID and proposing a preferred term."@en . obo:IAO_0000224 obo:IAO_0000115 "Core is an instance of a grouping of terms from an ontology or ontologies. It is used by the ontology to identify main classes."@en ; obo:IAO_0000117 "PERSON: Alan Ruttenberg"@en , "PERSON: Melanie Courtot"@en . obo:IAO_0000225 obo:IAO_0000111 "obsolescence reason specification"@en ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value."@en ; obo:IAO_0000116 "The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology."@en ; obo:IAO_0000117 "PERSON: Alan Ruttenberg"@en , "PERSON: Melanie Courtot"@en . obo:IAO_0000226 obo:IAO_0000111 "placeholder removed"@en . obo:IAO_0000227 obo:IAO_0000111 "terms merged"@en ; obo:IAO_0000116 "An editor note should explain what were the merged terms and the reason for the merge."@en . obo:IAO_0000228 obo:IAO_0000111 "term imported"@en ; obo:IAO_0000116 "This is to be used when the original term has been replaced by a term imported from an other ontology. An editor note should indicate what is the URI of the new term to use."@en . obo:IAO_0000229 obo:IAO_0000111 "term split"@en ; obo:IAO_0000116 "This is to be used when a term has been split in two or more new terms. An editor note should indicate the reason for the split and indicate the URIs of the new terms created."@en . obo:IAO_0000231 obo:IAO_0000111 "has obsolescence reason"@en ; obo:IAO_0000115 "Relates an annotation property to an obsolescence reason. The values of obsolescence reasons come from a list of predefined terms, instances of the class obsolescence reason specification."@en ; obo:IAO_0000117 "PERSON:Alan Ruttenberg"@en , "PERSON:Melanie Courtot"@en . obo:IAO_0000234 obo:IAO_0000111 "ontology term requester"@en ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "The name of the person, project, or organization that motivated inclusion of an ontology term by requesting its addition."@en ; obo:IAO_0000117 "Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg"@en ; obo:IAO_0000119 "Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg"@en . obo:IAO_0000409 obo:IAO_0000111 "denotator type"@en ; obo:IAO_0000112 "The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are \"natural kinds\" and the latter arbitrary collections of entities."@en ; obo:IAO_0000115 "A denotator type indicates how a term should be interpreted from an ontological perspective."@en ; obo:IAO_0000117 "Alan Ruttenberg"@en ; obo:IAO_0000119 "Barry Smith, Werner Ceusters"@en . obo:IAO_0000410 obo:IAO_0000111 "universal"@en ; obo:IAO_0000116 "Hard to give a definition for. Intuitively a \"natural kind\" rather than a collection of any old things, which a class is able to be, formally. At the meta level, universals are defined as positives, are disjoint with their siblings, have single asserted parents."@en ; obo:IAO_0000117 "Alan Ruttenberg"@en ; obo:IAO_0000119 "A Formal Theory of Substances, Qualities, and Universals, http://ontology.buffalo.edu/bfo/SQU.pdf"@en . obo:IAO_0000411 obo:IAO_0000111 "is denotator type"@en ; obo:IAO_0000115 "Relates an class defined in an ontology, to the type of it's denotator"@en ; obo:IAO_0000116 "In OWL 2 add AnnotationPropertyRange('is denotator type' 'denotator type')"@en ; obo:IAO_0000117 "Alan Ruttenberg"@en . obo:IAO_0000420 obo:IAO_0000111 "defined class"@en ; obo:IAO_0000115 "A defined class is a class that is defined by a set of logically necessary and sufficient conditions but is not a universal"@en ; obo:IAO_0000116 "\"definitions\", in some readings, always are given by necessary and sufficient conditions. So one must be careful (and this is difficult sometimes) to distinguish between defined classes and universal."@en ; obo:IAO_0000117 "Alan Ruttenberg"@en . obo:IAO_0000421 obo:IAO_0000111 "named class expression"@en ; obo:IAO_0000115 "A named class expression is a logical expression that is given a name. The name can be used in place of the expression."@en ; obo:IAO_0000116 "named class expressions are used in order to have more concise logical definition but their extensions may not be interesting classes on their own. In languages such as OWL, with no provisions for macros, these show up as actuall classes. Tools may with to not show them as such, and to replace uses of the macros with their expansions"@en ; obo:IAO_0000117 "Alan Ruttenberg"@en . obo:IAO_0000423 obo:IAO_0000111 "to be replaced with external ontology term"@en ; obo:IAO_0000115 "Terms with this status should eventually replaced with a term from another ontology."@en ; obo:IAO_0000117 "Alan Ruttenberg"@en ; obo:IAO_0000119 "group:OBI"@en . obo:IAO_0000426 obo:IAO_0000111 "first order logic expression"@en ; obo:IAO_0000115 "An assertion that holds between an OWL Object Property and a string or literal, where the value of the string or literal is a Common Logic sentence of collection of sentences that define the Object Property." ; obo:IAO_0000117 "PERSON:Alan Ruttenberg"@en . obo:IAO_0000427 obo:IAO_0000111 "antisymmetric property"@en ; obo:IAO_0000112 "part_of antisymmetric property xsd:true"@en ; obo:IAO_0000115 "Use boolean value xsd:true to indicate that the property is an antisymmetric property"@en ; obo:IAO_0000117 "Alan Ruttenberg"@en . obo:IAO_0000428 obo:IAO_0000111 "requires discussion"@en ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "A term that is metadata complete, has been reviewed, and problems have been identified that require discussion before release. Such a term requires editor note(s) to identify the outstanding issues."@en ; obo:IAO_0000117 "Alan Ruttenberg"@en ; obo:IAO_0000119 "group:OBI"@en . obo:IAO_0000596 obo:IAO_0000111 "has ID digit count"@en ; obo:IAO_0000112 """Ontology: Annotations: 'has ID prefix': \"http://purl.obolibrary.org/obo/RO_\" 'has ID digit count' : 7, rdfs:label \"RO id policy\" 'has ID policy for': \"RO\""""@en ; obo:IAO_0000115 "Relates an ontology used to record id policy to the number of digits in the URI. The URI is: the 'has ID prefix\" annotation property value concatenated with an integer in the id range (left padded with \"0\"s to make this many digits)"@en ; obo:IAO_0000117 "Person:Alan Ruttenberg"@en . obo:IAO_0000597 obo:IAO_0000111 "has ID range allocated"@en ; obo:IAO_0000112 """Datatype: idrange:1 Annotations: 'has ID range allocated to': \"Chris Mungall\" EquivalentTo: xsd:integer[> 2151 , <= 2300] """@en ; obo:IAO_0000115 "Relates a datatype that encodes a range of integers to the name of the person or organization who can use those ids constructed in that range to define new terms"@en ; obo:IAO_0000117 "Person:Alan Ruttenberg"@en . obo:IAO_0000598 obo:IAO_0000111 "has ID policy for"@en ; obo:IAO_0000112 """Ontology: Annotations: 'has ID prefix': \"http://purl.obolibrary.org/obo/RO_\" 'has ID digit count' : 7, rdfs:label \"RO id policy\" 'has ID policy for': \"RO\""""@en ; obo:IAO_0000115 "Relating an ontology used to record id policy to the ontology namespace whose policy it manages"@en ; obo:IAO_0000117 "Person:Alan Ruttenberg"@en . obo:IAO_0000599 obo:IAO_0000111 "has ID prefix"@en ; obo:IAO_0000112 """Ontology: Annotations: 'has ID prefix': \"http://purl.obolibrary.org/obo/RO_\" 'has ID digit count' : 7, rdfs:label \"RO id policy\" 'has ID policy for': \"RO\""""@en ; obo:IAO_0000115 "Relates an ontology used to record id policy to a prefix concatenated with an integer in the id range (left padded with \"0\"s to make this many digits) to construct an ID for a term being created."@en ; obo:IAO_0000117 "Person:Alan Ruttenberg"@en . obo:IAO_0000603 obo:IAO_0000111 "is allocated id range"@en ; obo:IAO_0000115 "Relates an ontology IRI to an (inclusive) range of IRIs in an OBO name space. The range is give as, e.g. \"IAO_0020000-IAO_0020999\""@en ; obo:IAO_0000117 "PERSON:Alan Ruttenberg"@en . obo:IAO_0000700 obo:IAO_0000111 "has ontology root term"@en ; obo:IAO_0000115 "Ontology annotation property. Relates an ontology to a term that is a designated root term of the ontology. Display tools like OLS can use terms annotated with this property as the starting point for rendering the ontology class hierarchy. There can be more than one root."@en ; obo:IAO_0000117 "Nicolas Matentzoglu"@en . obo:IAO_0006011 obo:IAO_0000111 "may be identical to"@en ; obo:IAO_0000115 "A annotation relationship between two terms in an ontology that may refer to the same (natural) type but where more evidence is required before terms are merged."@en ; obo:IAO_0000117 "David Osumi-Sutherland"@en . obo:IAO_0006012 obo:IAO_0000111 "scheduled for obsoletion on or after"@en ; obo:IAO_0000115 "Used when the class or object is scheduled for obsoletion/deprecation on or after a particular date."@en ; obo:IAO_0000117 "Chris Mungall, Jie Zheng"@en . obo:IAO_0100001 obo:IAO_0000111 "term replaced by"@en ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "Use on obsolete terms, relating the term to another term that can be used as a substitute"@en ; obo:IAO_0000117 "Person:Alan Ruttenberg"@en ; obo:IAO_0000119 "Person:Alan Ruttenberg"@en . obo:IAO_8000000 obo:IAO_0000111 "ontology module"@en ; obo:IAO_0000116 "I have placed this under 'data about an ontology part', but this can be discussed. I think this is OK if 'part' is interpreted reflexively, as an ontology module is the whole ontology rather than part of it."@en ; obo:IAO_0000118 "ontology file"@en . obo:IAO_8000001 obo:IAO_0000111 "base ontology module"@en ; obo:IAO_0000115 "An ontology module that comprises only of asserted axioms local to the ontology, excludes import directives, and excludes axioms or declarations from external ontologies."@en . obo:IAO_8000002 obo:IAO_0000111 "editors ontology module"@en ; obo:IAO_0000115 "An ontology module that is intended to be directly edited, typically managed in source control, and typically not intended for direct consumption by end-users."@en ; obo:IAO_0000118 "source ontology module"@en . obo:IAO_8000003 obo:IAO_0000111 "main release ontology module"@en ; obo:IAO_0000115 "An ontology module that is intended to be the primary release product and the one consumed by the majority of tools."@en ; obo:IAO_0000116 "TODO: Add logical axioms that state that a main release ontology module is derived from (directly or indirectly) an editors module"@en . obo:IAO_8000004 obo:IAO_0000111 "bridge ontology module"@en ; obo:IAO_0000115 "An ontology module that consists entirely of axioms that connect or bridge two distinct ontology modules. For example, the Uberon-to-ZFA bridge module."@en . obo:IAO_8000005 obo:IAO_0000111 "import ontology module"@en ; obo:IAO_0000115 "A subset ontology module that is intended to be imported from another ontology."@en ; obo:IAO_0000116 "TODO: add axioms that indicate this is the output of a module extraction process."@en ; obo:IAO_0000118 "import file"@en . obo:IAO_8000006 obo:IAO_0000111 "subset ontology module"@en ; obo:IAO_0000115 "An ontology module that is extracted from a main ontology module and includes only a subset of entities or axioms."@en ; obo:IAO_0000118 "ontology slim"@en , "subset ontology"@en . obo:IAO_8000007 obo:IAO_0000111 "curation subset ontology module"@en ; obo:IAO_0000115 "A subset ontology that is intended as a whitelist for curators using the ontology. Such a subset will exclude classes that curators should not use for curation."@en . obo:IAO_8000008 obo:IAO_0000111 "analysis ontology module"@en ; obo:IAO_0000115 "An ontology module that is intended for usage in analysis or discovery applications."@en . obo:IAO_8000009 obo:IAO_0000111 "single layer ontology module"@en ; obo:IAO_0000115 "A subset ontology that is largely comprised of a single layer or strata in an ontology class hierarchy. The purpose is typically for rolling up for visualization. The classes in the layer need not be disjoint."@en ; obo:IAO_0000118 "ribbon subset"@en . obo:IAO_8000010 obo:IAO_0000111 "exclusion subset ontology module"@en ; obo:IAO_0000115 "A subset of an ontology that is intended to be excluded for some purpose. For example, a blacklist of classes."@en ; obo:IAO_0000118 "antislim"@en . obo:IAO_8000011 obo:IAO_0000111 "external import ontology module"@en ; obo:IAO_0000115 "An imported ontology module that is derived from an external ontology. Derivation methods include the OWLAPI SLME approach."@en ; obo:IAO_0000118 "external import"@en . obo:IAO_8000012 obo:IAO_0000111 "species subset ontology module"@en ; obo:IAO_0000115 "A subset ontology that is crafted to either include or exclude a taxonomic grouping of species."@en ; obo:IAO_0000118 "taxon subset"@en . obo:IAO_8000013 obo:IAO_0000111 "reasoned ontology module"@en ; obo:IAO_0000115 "An ontology module that contains axioms generated by a reasoner. The generated axioms are typically direct SubClassOf axioms, but other possibilities are available."@en . obo:IAO_8000014 obo:IAO_0000111 "generated ontology module"@en ; obo:IAO_0000115 "An ontology module that is automatically generated, for example via a SPARQL query or via template and a CSV."@en ; obo:IAO_0000116 "TODO: Add axioms (using PROV-O?) that indicate this is the output-of some reasoning process"@en . obo:IAO_8000015 obo:IAO_0000111 "template generated ontology module"@en ; obo:IAO_0000115 "An ontology module that is automatically generated from a template specification and fillers for slots in that template."@en . obo:IAO_8000016 obo:IAO_0000111 "taxonomic bridge ontology module"@en . obo:IAO_8000017 obo:IAO_0000111 "ontology module subsetted by expressivity"@en . obo:IAO_8000018 obo:IAO_0000111 "obo basic subset ontology module"@en ; obo:IAO_0000115 """A subset ontology that is designed for basic applications to continue to make certain simplifying assumptions; many of these simplifying assumptions were based on the initial version of the Gene Ontology, and have become enshrined in many popular and useful tools such as term enrichment tools. Examples of such assumptions include: traversing the ontology graph ignoring relationship types using a naive algorithm will not lead to cycles (i.e. the ontology is a DAG); every referenced term is declared in the ontology (i.e. there are no dangling clauses). An ontology is OBO Basic if and only if it has the following characteristics: DAG Unidirectional No Dangling Clauses Fully Asserted Fully Labeled No equivalence axioms Singly labeled edges No qualifier lists No disjointness axioms No owl-axioms header No imports"""@en . obo:IAO_8000019 obo:IAO_0000111 "ontology module subsetted by OWL profile"@en . obo:IAO_8000020 obo:IAO_0000111 "EL++ ontology module"@en . obo:OBI_0000047 obo:IAO_0000111 "processed material"@en ; obo:IAO_0000112 "Examples include gel matrices, filter paper, parafilm and buffer solutions, mass spectrometer, tissue samples"@en ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "Is a material entity that is created or changed during material processing."@en ; obo:IAO_0000117 "PERSON: Alan Ruttenberg"@en . obo:OBI_0000070 obo:IAO_0000111 "assay"@en ; obo:IAO_0000112 "Assay the wavelength of light emitted by excited Neon atoms. Count of geese flying over a house." ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A planned process with the objective to produce information about the material entity that is the evaluant, by physically examining it or its proxies."@en ; obo:IAO_0000116 "12/3/12: BP: the reference to the 'physical examination' is included to point out that a prediction is not an assay, as that does not require physical examiniation." ; obo:IAO_0000117 "PlanAndPlannedProcess Branch"@en ; obo:IAO_0000118 "measuring"@en , "scientific observation"@en ; obo:IAO_0000119 "OBI branch derived"@en . obo:OBI_0000967 obo:IAO_0000111 "container" ; obo:IAO_0000114 obo:IAO_0000123 ; obo:IAO_0000115 "A device that can be used to restrict the location of material entities over time" ; obo:IAO_0000116 "03/21/2010: Added to allow classification of children (similar to what we want to do for 'measurement device'. Lookint at what classifies here, we may want to reconsider a contain function assigned to a part of an entity is necessarily also a function of the whole (e.g. is a centrifuge a container because it has test tubes as parts?)" ; obo:IAO_0000117 "PERSON: Bjoern Peters" . obo:OBI_0000968 obo:IAO_0000111 "device" ; obo:IAO_0000112 "A voltmeter is a measurement device which is intended to perform some measure function." , "An autoclave is a device that sterlizes instruments or contaminated waste by applying high temperature and pressure." ; obo:IAO_0000114 obo:IAO_0000122 ; obo:IAO_0000115 "A material entity that is designed to perform a function in a scientific investigation, but is not a reagent." ; obo:IAO_0000116 """2012-12-17 JAO: In common lab usage, there is a distinction made between devices and reagents that is difficult to model. Therefore we have chosen to specifically exclude reagents from the definition of \"device\", and are enumerating the types of roles that a reagent can perform. 2013-6-5 MHB: The following clarifications are outcomes of the May 2013 Philly Workshop. Reagents are distinguished from devices that also participate in scientific techniques by the fact that reagents are chemical or biological in nature and necessarily participate in some chemical interaction or reaction during the realization of their experimental role. By contrast, devices do not participate in such chemical reactions/interactions. Note that there are cases where devices use reagent components during their operation, where the reagent-device distinction is less clear. For example: (1) An HPLC machine is considered a device, but has a column that holds a stationary phase resin as an operational component. This resin qualifies as a device if it participates purely in size exclusion, but bears a reagent role that is realized in the running of a column if it interacts electrostatically or chemically with the evaluant. The container the resin is in (“the column”) considered alone is a device. So the entire column as well as the entire HPLC machine are devices that have a reagent as an operating part. (2) A pH meter is a device, but its electrode component bears a reagent role in virtue of its interacting directly with the evaluant in execution of an assay. (3) A gel running box is a device that has a metallic lead as a component that participates in a chemical reaction with the running buffer when a charge is passed through it. This metallic lead is considered to have a reagent role as a component of this device realized in the running of a gel. In the examples above, a reagent is an operational component of a device, but the device itself does not realize a reagent role (as bearing a reagent role is not transitive across the part_of relation). In this way, the asserted disjointness between a reagent and device holds, as both roles are never realized in the same bearer during execution of an assay.""" ; obo:IAO_0000117 "PERSON: Helen Parkinson" ; obo:IAO_0000118 "instrument" ; obo:IAO_0000119 "OBI development call 2012-12-17." . obo:OGMS_0000031 obo:IAO_0000115 "A disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism."@en . obo:OMO_0001000 obo:IAO_0000115 "The term was added to the ontology on the assumption it was in scope, but it turned out later that it was not."@en ; obo:IAO_0000116 "This obsolesence reason should be used conservatively. Typical valid examples are: un-necessary grouping classes in disease ontologies, a phenotype term added on the assumption it was a disease."@en ; obo:IAO_0000117 . obo:OMO_0001001 obo:IAO_0000115 "This is an annotation used on an object property to indicate a logical characterstic beyond what is possible in OWL." ; obo:IAO_0000119 "OBO Operations call" . obo:OMO_0003000 obo:IAO_0000112 "CHEBI:26523 (reactive oxygen species) has an exact synonym (ROS), which is of type OMO:0003000 (abbreviation)" ; obo:IAO_0000115 "A synonym type for describing abbreviations or initalisms" . obo:OMO_0003001 obo:IAO_0000115 "A synonym type for describing ambiguous synonyms" . obo:OMO_0003002 obo:IAO_0000115 "A synonym type for describing dubious synonyms" . obo:OMO_0003003 obo:IAO_0000112 "EFO:0006346 (severe cutaneous adverse reaction) has an exact synonym (scar), which is of the type OMO:0003003 (layperson synonym)" ; obo:IAO_0000115 "A synonym type for describing layperson or colloquial synonyms" . obo:OMO_0003004 obo:IAO_0000112 "CHEBI:23367 (molecular entity) has an exact synonym (molecular entities), which is of the type OMO:0003004 (plural form)" ; obo:IAO_0000115 "A synonym type for describing pluralization synonyms" . obo:OMO_0003005 obo:IAO_0000112 "CHEBI:16189 (sulfate) has an exact synonym (sulphate), which is of the type OMO:0003005 (UK spelling synonym)" ; obo:IAO_0000115 "A synonym type for describing UK spelling variants" . obo:OMO_0003006 obo:IAO_0000115 "A synonym type for common misspellings" . obo:OMO_0003007 obo:IAO_0000115 "A synonym type for misnomers, i.e., a synonym that is not technically correct but is commonly used anyway" . obo:OMO_0003008 obo:IAO_0000112 "MAPT, the gene that encodes the Tau protein, has a previous name DDPAC. Note: in this case, the name type is more specifically the gene symbol." ; obo:IAO_0000115 "A synonym type for names that have been used as primary labels in the past." . obo:OMO_0003009 obo:IAO_0000112 "The legal name for Harvard University (https://ror.org/03vek6s52) is President and Fellows of Harvard College" ; obo:IAO_0000115 "A synonym type for the legal entity name" . obo:PATO_0000001 obo:IAO_0000115 "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:PATO_0000001 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" ; oboInOwl:hasDbXref "PATOC:GVG" ] . obo:PATO_0000402 obo:IAO_0000115 "A branchiness quality inhering in a bearer by virtue of the bearer's having branches." ; oboInOwl:hasExactSynonym "ramified" , "ramiform" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:PATO_0000402 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "A branchiness quality inhering in a bearer by virtue of the bearer's having branches." ; oboInOwl:hasDbXref "WordNet:WordNet" ] . obo:PATO_0001199 obo:IAO_0000115 "A shape quality inhering in a bearer by virtue of the bearer's being narrow, with the two opposite margins parallel." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:PATO_0001199 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "A shape quality inhering in a bearer by virtue of the bearer's being narrow, with the two opposite margins parallel." ; oboInOwl:hasDbXref "ISBN:0881923214" ] . obo:PATO_0001470 obo:IAO_0000115 "A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity." ; oboInOwl:hasExactSynonym "proportion" , "proportionality" , "quotient" , "ratio" ; oboInOwl:hasRelatedSynonym "rate" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:PATO_0001470 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity." ; oboInOwl:hasDbXref "PATOC:nw" ] . obo:PATO_0002124 obo:IAO_0000115 "A quality inhering in a bearer by virtue of the bearer's processing the form of a thin plate sheet or layer." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:PATO_0002124 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "A quality inhering in a bearer by virtue of the bearer's processing the form of a thin plate sheet or layer." ; oboInOwl:hasDbXref "PATOC:GVG" ] . obo:RO_0000300 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "OBSOLETE A relation that holds between two neurons connected directly via a synapse, or indirectly via a series of synaptically connected neurons."@en ; obo:IAO_0000117 . obo:RO_0000301 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "OBSOLETE A relation that holds between a neuron that is synapsed_to another neuron or a neuron that is connected indirectly to another by a chain of neurons, each synapsed_to the next, in which the direction is from the last to the first."@en ; obo:IAO_0000117 . obo:RO_0000302 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "OBSOLETE A relation that holds between a neuron that is synapsed_by another neuron or a neuron that is connected indirectly to another by a chain of neurons, each synapsed_by the next, in which the direction is from the last to the first."@en ; obo:IAO_0000117 . obo:RO_0001018 obo:IAO_0000111 "contained in"@en ; obo:IAO_0000116 "Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t. The containment relation on the instance level can then be defined (see definition):"@en , "Containment is location not involving parthood, and arises only where some immaterial continuant is involved." ; obo:IAO_0000118 "contained_in"@en . obo:RO_0001019 obo:IAO_0000111 "contains"@en . obo:RO_0001020 obo:IAO_0000112 "penicillin (CHEBI:17334) is allergic trigger for penicillin allergy (DOID:0060520)" ; obo:IAO_0000115 "A relation between a material entity and a condition (a phenotype or disease) of a host, in which the material entity is not part of the host, and is considered harmless to non-allergic hosts, and the condition results in pathological processes that include an abnormally strong immune response against the material entity." . obo:RO_0001021 obo:IAO_0000115 "A relation between a material entity and a condition (a phenotype or disease) of a host, in which the material entity is part of the host itself, and the condition results in pathological processes that include an abnormally strong immune response against the material entity." . obo:RO_0001022 obo:IAO_0000112 "penicillin allergy (DOID:0060520) has allergic trigger penicillin (CHEBI:17334)" ; obo:IAO_0000115 "A relation between a condition (a phenotype or disease) of a host and a material entity, in which the material entity is not part of the host, and is considered harmless to non-allergic hosts, and the condition results in pathological processes that include an abnormally strong immune response against the material entity." . obo:RO_0001023 obo:IAO_0000115 "A relation between a condition (a phenotype or disease) of a host and a material entity, in which the material entity is part of the host itself, and the condition results in pathological processes that include an abnormally strong immune response against the material entity." . obo:RO_0001901 obo:IAO_0000115 """## Elucidation This is used when the statement/axiom is assumed to hold true 'eternally' ## How to interpret (informal) First the "atemporal" FOL is derived from the OWL using the standard interpretation. This axiom is temporalized by embedding the axiom within a for-all-times quantified sentence. The t argument is added to all instantiation predicates and predicates that use this relation. ## Example Class: nucleus SubClassOf: part_of some cell forall t : forall n : instance_of(n,Nucleus,t) implies exists c : instance_of(c,Cell,t) part_of(n,c,t) ## Notes This interpretation is *not* the same as an at-all-times relation""" . obo:RO_0001902 obo:IAO_0000115 """## Elucidation This is used when the first-order logic form of the relation is binary, and takes no temporal argument. ## Example: Class: limb SubClassOf: develops_from some lateral-plate-mesoderm forall t, t2: forall x : instance_of(x,Limb,t) implies exists y : instance_of(y,LPM,t2) develops_from(x,y)""" . obo:RO_0002000 obo:IAO_0000112 "the surface of my skin is a 2D boundary of my body"@en ; obo:IAO_0000115 "a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity"@en ; obo:IAO_0000116 "A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts."@en , "Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape."@en ; obo:IAO_0000118 "2D_boundary_of"@en , "boundary of"@en , "is 2D boundary of"@en , "is boundary of"@en , "surface of"@en . obo:RO_0002001 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000116 "May be obsoleted, see https://github.com/oborel/obo-relations/issues/260" ; obo:IAO_0000117 . obo:RO_0002002 obo:IAO_0000112 "my body has 2D boundary the surface of my skin"@en ; obo:IAO_0000115 "a relation between a material entity and a 2D immaterial entity (the boundary), in which the boundary delimits the material entity"@en ; obo:IAO_0000116 "A 2D boundary may have holes and gaps, but it must be a single connected entity, not an aggregate of several disconnected parts."@en , "Although the boundary is two-dimensional, it exists in three-dimensional space and thus has a 3D shape."@en ; obo:IAO_0000117 ; obo:IAO_0000118 "has boundary"@en , "has_2D_boundary"@en . obo:RO_0002003 obo:IAO_0000115 "A relation that holds between two neurons that are electrically coupled via gap junctions." ; obo:IAO_0000117 . obo:RO_0002004 obo:IAO_0000115 "The relationship that holds between a trachea or tracheole and an antomical structure that is contained in (and so provides an oxygen supply to)." ; obo:IAO_0000117 . obo:RO_0002005 obo:IAO_0000117 . obo:RO_0002006 obo:IAO_0000117 . obo:RO_0002007 obo:IAO_0000115 """X outer_layer_of Y iff: . X :continuant that bearer_of some PATO:laminar . X part_of Y . exists Z :surface . X has_boundary Z . Z boundary_of Y has_boundary: http://purl.obolibrary.org/obo/RO_0002002 boundary_of: http://purl.obolibrary.org/obo/RO_0002000""" ; obo:IAO_0000117 . obo:RO_0002008 obo:IAO_0000115 "A relation that holds between two linear structures that are approximately parallel to each other for their entire length and where either the two structures are adjacent to each other or one is part of the other." ; obo:IAO_0000116 "Note from NCEAS meeting: consider changing primary label" ; obo:IAO_0000117 . obo:RO_0002009 obo:IAO_0000115 "A relation that applies between a cell(c) and a gene(g) , where the process of 'transcription, DNA templated (GO_0006351)' is occuring in in cell c and that process has input gene g." ; obo:IAO_0000117 . obo:RO_0002018 obo:IAO_0000115 "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." . obo:RO_0002019 obo:IAO_0000115 "A relationship that holds between between a receptor and an chemical entity, typically a small molecule or peptide, that carries information between cells or compartments of a cell and which binds the receptor and regulates its effector function." . obo:RO_0002025 obo:IAO_0000115 "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0002025 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity." ; oboInOwl:hasDbXref ] . obo:RO_0002026 obo:IAO_0000115 """A relationship that holds between two images, A and B, where: A depicts X; B depicts Y; X and Y are both of type T' C is a 2 layer image consiting of layers A and B; A and B are aligned in C according to a shared co-ordinate framework so that common features of X and Y are co-incident with each other. Note: A and B may be 2D or 3D. Examples include: the relationship between two channels collected simultaneously from a confocal microscope; the relationship between an image dpeicting X and a painted annotation layer that delineates regions of X; the relationship between the tracing of a neuron on an EM stack and the co-ordinate space of the stack; the relationship between two separately collected images that have been brought into register via some image registration software.""" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0002026 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget """A relationship that holds between two images, A and B, where: A depicts X; B depicts Y; X and Y are both of type T' C is a 2 layer image consiting of layers A and B; A and B are aligned in C according to a shared co-ordinate framework so that common features of X and Y are co-incident with each other. Note: A and B may be 2D or 3D. Examples include: the relationship between two channels collected simultaneously from a confocal microscope; the relationship between an image dpeicting X and a painted annotation layer that delineates regions of X; the relationship between the tracing of a neuron on an EM stack and the co-ordinate space of the stack; the relationship between two separately collected images that have been brought into register via some image registration software.""" ; oboInOwl:hasDbXref ] . obo:RO_0002029 obo:IAO_0000115 "Then percentage of organisms in a population that die during some specified age range (age-specific mortality rate), minus the percentage that die in during the same age range in a wild-type population." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0002029 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Then percentage of organisms in a population that die during some specified age range (age-specific mortality rate), minus the percentage that die in during the same age range in a wild-type population." ; oboInOwl:hasDbXref "PMID:24138933" , "Wikipedia:Infant_mortality" ] . obo:RO_0002100 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "Relation between a neuron and a material anatomical entity that its soma is part of."@en ; obo:IAO_0000117 . obo:RO_0002101 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 """relationship between a neuron and a neuron projection bundle (e.g.- tract or nerve bundle) that one or more of its projections travels through. """@en ; obo:IAO_0000117 ; obo:IAO_0000118 "fasciculates with" . obo:RO_0002102 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "Relation between a neuron and some structure its axon forms (chemical) synapses in."@en ; obo:IAO_0000117 , . obo:RO_0002103 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "Relation between an anatomical structure (including cells) and a neuron that chemically synapses to it. "@en ; obo:IAO_0000117 , . obo:RO_0002104 obo:IAO_0000112 "Every B cell[CL_0000236] has plasma membrane part some immunoglobulin complex[GO_0019814]"@en ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "Holds between a cell c and a protein complex or protein p if and only if that cell has as part a plasma_membrane[GO:0005886], and that plasma membrane has p as part." ; obo:IAO_0000117 , , ; obo:IAO_0000119 . obo:RO_0002105 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "A relation between a motor neuron and a muscle that it synapses to via a type Ib bouton." ; obo:IAO_0000117 , . obo:RO_0002106 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "A relation between a motor neuron and a muscle that it synapses to via a type Is bouton." ; obo:IAO_0000117 , . obo:RO_0002107 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "A relation between a motor neuron and a muscle that it synapses to via a type II bouton." ; obo:IAO_0000117 , . obo:RO_0002108 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "Relation between a muscle and a motor neuron that synapses to it via a type II bouton." ; obo:IAO_0000117 , . obo:RO_0002109 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "Relation between a muscle and a motor neuron that synapses to it via a type Ib bouton." ; obo:IAO_0000117 , . obo:RO_0002110 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "Relation between a neuron and some structure (e.g.- a brain region) in which it receives (chemical) synaptic input. "@en ; obo:IAO_0000117 , ; obo:IAO_0000118 "synapsed in"@en . obo:RO_0002111 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000118 "has neurotransmitter" . obo:RO_0002112 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "Relation between a muscle and a motor neuron that synapses to it via a type Is bouton." ; obo:IAO_0000117 , . obo:RO_0002113 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "Relation between a neuron and some structure (e.g.- a brain region) in which it receives (chemical) synaptic input."@en ; obo:IAO_0000118 "synapses in"@en . obo:RO_0002114 obo:IAO_0000115 "A relation between a motor neuron and a muscle that it synapses to via a type III bouton." . obo:RO_0002115 obo:IAO_0000115 """Relation between a muscle and a motor neuron that synapses to it via a type III bouton. """ . obo:RO_0002120 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 """ Relation between a neuron and an anatomical structure (including cells) that it chemically synapses to. """@en ; obo:IAO_0000117 , . obo:RO_0002121 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 """Relation between a neuron and some structure (e.g.- a brain region) in which its dendrite receives synaptic input. """@en ; obo:IAO_0000117 , . obo:RO_0002130 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "A general relation between a neuron and some structure in which it either chemically synapses to some target or in which it receives (chemical) synaptic input." ; obo:IAO_0000117 ; obo:IAO_0000118 "has synapse in" . obo:RO_0002131 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "x overlaps y if and only if there exists some z such that x has part z and z part of y" . obo:RO_0002132 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "The relation between a neuron projection bundle and a neuron projection that is fasciculated with it."@en ; obo:IAO_0000117 ; obo:IAO_0000118 "has fasciculating component"@en . obo:RO_0002134 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 """Relation between a 'neuron projection bundle' and a region in which one or more of its component neuron projections either synapses to targets or receives synaptic input. T innervates some R Expands_to: T has_fasciculating_neuron_projection that synapse_in some R."""@en ; obo:IAO_0000117 . obo:RO_0002150 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "X continuous_with Y if and only if X and Y share a fiat boundary." ; obo:IAO_0000117 ; obo:IAO_0000118 "connected to" . obo:RO_0002151 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "x partially overlaps y iff there exists some z such that z is part of x and z is part of y, and it is also the case that neither x is part of y or y is part of x" ; obo:IAO_0000116 "We would like to include disjointness axioms with part_of and has_part, however this is not possible in OWL2 as these are non-simple properties and hence cannot appear in a disjointness axiom" ; obo:IAO_0000118 "proper overlaps" . obo:RO_0002156 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "d derived_by_descent_from a if d is specified by some genetic program that is sequence-inherited-from a genetic program that specifies a." ; obo:IAO_0000118 "ancestral_stucture_of" , "evolutionarily_descended_from" . obo:RO_0002157 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "inverse of derived by descent from" . obo:RO_0002158 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "two individual entities d1 and d2 stand in a shares_ancestor_with relation if and only if there exists some a such that d1 derived_by_descent_from a and d2 derived_by_descent_from a." . obo:RO_0002159 obo:IAO_0000114 obo:IAO_0000125 . obo:RO_0002160 obo:IAO_0000112 "lactation SubClassOf 'only in taxon' some 'Mammalia'" ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "x only in taxon y if and only if x is in taxon y, and there is no other organism z such that y!=z a and x is in taxon z." ; obo:IAO_0000116 """The original intent was to treat this as a macro that expands to 'in taxon' only ?Y - however, this is not necessary if we instead have supplemental axioms that state that each pair of sibling tax have a disjointness axiom using the 'in taxon' property - e.g. 'in taxon' some Eukaryota DisjointWith 'in taxon' some Eubacteria""" ; obo:IAO_0000117 ; obo:IAO_0000119 , . obo:RO_0002170 obo:IAO_0000112 "a 'toe distal phalanx bone' that is connected to a 'toe medial phalanx bone' (an interphalangeal joint *connects* these two bones)." ; obo:IAO_0000115 "a is connected to b if and only if a and b are discrete structure, and there exists some connecting structure c, such that c connects a and b" ; obo:IAO_0000119 . obo:RO_0002171 obo:IAO_0000115 "A is mutually_spatially_disjoint_with B if both A and B are classes, and there exists no p such that p is part_of some A and p is part_of some B." ; obo:IAO_0000118 "non-overlapping with" , "shares no parts with" ; obo:IAO_0000119 . obo:RO_0002172 obo:IAO_0000115 "An assertion that holds between an ontology class and an organism taxon class, which is intepreted to yield some relationship between instances of the ontology class and the taxon." . obo:RO_0002173 obo:IAO_0000115 "S ambiguous_for_taxon T if the class S does not have a clear referent in taxon T. An example would be the class 'manual digit 1', which encompasses a homology hypotheses that is accepted for some species (e.g. human and mouse), but does not have a clear referent in Aves - the referent is dependent on the hypothesis embraced, and also on the ontogenetic stage. [PHENOSCPAE:asilomar_mtg]" . obo:RO_0002174 obo:IAO_0000115 "S dubious_for_taxon T if it is probably the case that no instances of S can be found in any instance of T." ; obo:IAO_0000117 ; obo:IAO_0000119 . obo:RO_0002176 obo:IAO_0000112 "The M8 connects Glasgow and Edinburgh" , "a 'toe distal phalanx bone' that is connected to a 'toe medial phalanx bone' (an interphalangeal joint *connects* these two bones)." ; obo:IAO_0000115 "c connects a if and only if there exist some b such that a and b are similar parts of the same system, and c connects b, specifically, c connects a with b. When one structure connects two others it unites some aspect of the function or role they play within the system." ; obo:IAO_0000119 . obo:RO_0002177 obo:IAO_0000115 "a is attached to part of b if a is attached to b, or a is attached to some p, where p is part of b." . obo:RO_0002178 obo:IAO_0000115 "Relation between an arterial structure and another structure, where the arterial structure acts as a conduit channeling fluid, substance or energy." ; obo:IAO_0000116 "Individual ontologies should provide their own constraints on this abstract relation. For example, in the realm of anatomy this should hold between an artery and an anatomical structure" ; obo:IAO_0000119 . obo:RO_0002179 obo:IAO_0000115 "Relation between an collecting structure and another structure, where the collecting structure acts as a conduit channeling fluid, substance or energy away from the other structure." ; obo:IAO_0000116 "Individual ontologies should provide their own constraints on this abstract relation. For example, in the realm of anatomy this should hold between a vein and an anatomical structure" ; obo:IAO_0000119 . obo:RO_0002180 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "w 'has component' p if w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type." ; obo:IAO_0000116 "The definition of 'has component' is still under discussion. The challenge is in providing a definition that does not imply transitivity." . obo:RO_0002200 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "A relationship that holds between a biological entity and a phenotype. Here a phenotype is construed broadly as any kind of quality of an organism part, a collection of these qualities, or a change in quality or qualities (e.g. abnormally increased temperature). The subject of this relationship can be an organism (where the organism has the phenotype, i.e. the qualities inhere in parts of this organism), a genomic entity such as a gene or genotype (if modifications of the gene or the genotype causes the phenotype), or a condition such as a disease (such that if the condition inheres in an organism, then the organism has the phenotype)." ; obo:IAO_0000117 . obo:RO_0002201 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "inverse of has phenotype" ; obo:IAO_0000117 . obo:RO_0002202 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y" ; obo:IAO_0000117 , , , . obo:RO_0002203 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "inverse of develops from" ; obo:IAO_0000117 , , . obo:RO_0002204 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "definition \"x has gene product of y if and only if y is a gene (SO:0000704) that participates in some gene expression process (GO:0010467) where the output of that process is either y or something that is ribosomally translated from x\"" ; obo:IAO_0000116 "We would like to be able to express the rule: if t transcribed from g, and t is a noncoding RNA and has an evolved function, then t has gene product g." ; obo:IAO_0000117 . obo:RO_0002205 obo:IAO_0000112 "every HOTAIR lncRNA is the gene product of some HOXC gene" , "every sonic hedgehog protein (PR:000014841) is the gene product of some sonic hedgehog gene" ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "x has gene product y if and only if x is a gene (SO:0000704) that participates in some gene expression process (GO:0010467) where the output of that process is either y or something that is ribosomally translated from y" ; obo:IAO_0000117 . obo:RO_0002206 obo:IAO_0000112 "'neural crest cell' SubClassOf expresses some 'Wnt1 gene'" ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "x expressed in y if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and the transcription of x is part of the gene expression process (iii) x is a mature gene product such as a protein, and x was translated or otherwise processes from a transcript that was transcribed as part of this gene expression process" ; obo:IAO_0000117 . obo:RO_0002207 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "Candidate definition: x directly_develops from y if and only if there exists some developmental process (GO:0032502) p such that x and y both participate in p, and x is the output of p and y is the input of p, and a substantial portion of the matter of x comes from y, and the start of x is coincident with or after the end of y." ; obo:IAO_0000117 , ; obo:IAO_0000119 "FBbt" ; oboInOwl:hasExactSynonym "has developmental precursor" . obo:RO_0002208 obo:IAO_0000115 "A parasite that kills or sterilizes its host" . obo:RO_0002209 obo:IAO_0000115 "inverse of parasitoid of" . obo:RO_0002210 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "inverse of directly develops from" ; obo:IAO_0000118 "developmental precursor of" . obo:RO_0002214 obo:IAO_0000112 "'human p53 protein' SubClassOf some ('has prototype' some ('participates in' some 'DNA repair'))" , "heart SubClassOf 'has prototype' some ('participates in' some 'blood circulation')" ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "x has prototype y if and only if x is an instance of C and y is a prototypical instance of C. For example, every instance of heart, both normal and abnormal is related by the has prototype relation to some instance of a \"canonical\" heart, which participates in blood circulation." ; obo:IAO_0000116 "Experimental. In future there may be a formalization in which this relation is treated as a shortcut to some modal logic axiom. We may decide to obsolete this and adopt a more specific evolutionary relationship (e.g. evolved from)" , "TODO: add homeomorphy axiom" , "This property can be used to make weaker forms of certain relations by chaining an additional property. For example, we may say: retina SubClassOf has_prototype some 'detection of light'. i.e. every retina is related to a prototypical retina instance which is detecting some light. Note that this is very similar to 'capable of', but this relation affords a wider flexibility. E.g. we can make a relation between continuants." ; obo:IAO_0000117 . obo:RO_0002217 obo:IAO_0000115 "OBSOLETE x actively participates in y if and only if x participates in y and x realizes some active role" ; obo:IAO_0000117 ; obo:IAO_0000118 "agent in" . obo:RO_0002218 obo:IAO_0000115 "OBSOLETE x has participant y if and only if x realizes some active role that inheres in y" ; obo:IAO_0000117 ; obo:IAO_0000118 "has agent" . obo:RO_0002219 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "x surrounded_by y if and only if (1) x is adjacent to y and for every region r that is adjacent to x, r overlaps y (2) the shared boundary between x and y occupies the majority of the outermost boundary of x" ; obo:IAO_0000117 . obo:RO_0002220 obo:IAO_0000112 "A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts." , "The epidermis layer of a vertebrate is adjacent to the dermis." , "The plasma membrane of a cell is adjacent to the cytoplasm, and also to the cell lumen which the cytoplasm occupies." , "The skin of the forelimb is adjacent to the skin of the torso if these are considered anatomical subdivisions with a defined border. Otherwise a relation such as continuous_with would be used." ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "x adjacent to y if and only if x and y share a boundary." ; obo:IAO_0000116 "This relation acts as a join point with BSPO" ; obo:IAO_0000117 . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0002220 ; owl:annotatedProperty obo:IAO_0000112 ; owl:annotatedTarget "A caterpillar walking on the surface of a leaf is adjacent_to the leaf, if one of the caterpillar appendages is touching the leaf. In contrast, a butterfly flying close to a flower is not considered adjacent, unless there are any touching parts." ; rdfs:seeAlso ] . obo:RO_0002225 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "x develops from part of y if and only if there exists some z such that x develops from z and z is part of y" ; obo:IAO_0000117 . obo:RO_0002226 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "x develops_in y if x is located in y whilst x is developing" ; obo:IAO_0000117 ; obo:IAO_0000119 "EHDAA2" , "Jonathan Bard, EHDAA2" . obo:RO_0002227 obo:IAO_0000115 "A sub-relation of parasite-of in which the parasite that cannot complete its life cycle without a host." . obo:RO_0002228 obo:IAO_0000115 "A sub-relations of parasite-of in which the parasite that can complete its life cycle independent of a host." . obo:RO_0002235 obo:IAO_0000115 "A parasite-of relationship in which the host is a plant and the parasite that attaches to the host stem (PO:0009047)" . obo:RO_0002236 obo:IAO_0000115 "A parasite-of relationship in which the host is a plant and the parasite that attaches to the host root (PO:0009005)" . obo:RO_0002237 obo:IAO_0000115 "A sub-relation of parasite-of in which the parasite is a plant, and the parasite is parasitic under natural conditions and is also photosynthetic to some degree. Hemiparasites may just obtain water and mineral nutrients from the host plant. Many obtain at least part of their organic nutrients from the host as well." . obo:RO_0002240 obo:IAO_0000115 "A broad relationship between an exposure event or process and any entity (e.g., an organism, organism population, or an organism part) that interacts with an exposure stimulus during the exposure event." ; obo:IAO_0000119 "ExO:0000001" . obo:RO_0002241 obo:IAO_0000115 "A broad relationship between an exposure event or process and any agent, stimulus, activity, or event that causes stress or tension on an organism and interacts with an exposure receptor during an exposure event." ; obo:IAO_0000119 "ExO:0000000" . obo:RO_0002242 obo:IAO_0000115 "A broad relationship between an exposure event or process and a process by which the exposure stressor comes into contact with the exposure receptor" ; obo:IAO_0000119 "ExO:0000055" . obo:RO_0002243 obo:IAO_0000115 "A broad relationship between an exposure event or process and the course takes from the source to the target." ; obo:IAO_0000119 "http://purl.obolibrary.org/obo/ExO_0000004"^^xsd:anyURI . obo:RO_0002244 obo:IAO_0000115 "Any relationship between an exposure event or process and any other entity." . obo:RO_0002245 obo:IAO_0000115 "g is over-expressed in t iff g is expressed in t, and the expression level of g is increased relative to some background." . obo:RO_0002246 obo:IAO_0000115 "g is under-expressed in t iff g is expressed in t, and the expression level of g is decreased relative to some background." . obo:RO_0002248 obo:IAO_0000112 "Any portion of roundup 'has active ingredient' some glyphosate" ; obo:IAO_0000115 "A relationship that holds between a substance and a chemical entity, if the chemical entity is part of the substance, and the chemical entity forms the biologically active component of the substance." ; oboInOwl:hasExactSynonym "has active substance" ; oboInOwl:hasRelatedSynonym "has active pharmaceutical ingredient" . obo:RO_0002249 obo:IAO_0000115 "inverse of has active ingredient" . obo:RO_0002252 obo:IAO_0000112 "In the tree T depicted in https://oborel.github.io/obo-relations/branching_part_of.png, B1 is connecting branch of S, and B1-1 as a connecting branch of B1." ; obo:IAO_0000115 "b connecting-branch-of s iff b is connected to s, and there exists some tree-like structure t such that the mereological sum of b plus s is either the same as t or a branching-part-of t." . obo:RO_0002253 obo:IAO_0000115 "inverse of connecting branch of" . obo:RO_0002254 obo:IAO_0000112 "Mammalian thymus has developmental contribution from some pharyngeal pouch 3; Mammalian thymus has developmental contribution from some pharyngeal pouch 4 [Kardong]" ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "x has developmental contribution from y iff x has some part z such that z develops from y"@en ; obo:IAO_0000117 . obo:RO_0002255 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "inverse of has developmental contribution from" ; obo:IAO_0000117 . obo:RO_0002256 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "t1 induced_by t2 if there is a process of developmental induction (GO:0031128) with t1 and t2 as interacting participants. t2 causes t1 to change its fate from a precursor material anatomical entity type T to T', where T' develops_from T" ; obo:IAO_0000117 , , ; obo:IAO_0000118 "induced by" ; obo:IAO_0000119 , " Developmental Biology, Gilbert, 8th edition, figure 6.5(F)" , "GO:0001759" . obo:RO_0002257 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "Inverse of developmentally induced by"@en ; obo:IAO_0000117 . obo:RO_0002258 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p" ; obo:IAO_0000116 "false"^^xsd:boolean ; obo:IAO_0000117 . obo:RO_0002260 obo:IAO_0000115 "c has-biological-role r iff c has-role r and r is a biological role (CHEBI:24432)" . obo:RO_0002261 obo:IAO_0000115 "c has-application-role r iff c has-role r and r is an application role (CHEBI:33232)" . obo:RO_0002262 obo:IAO_0000115 "c has-chemical-role r iff c has-role r and r is a chemical role (CHEBI:51086)" . obo:RO_0002285 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "x developmentally replaces y if and only if there is some developmental process that causes x to move or to cease to exist, and for the site that was occupied by x to become occupied by y, where y either comes into existence in this site or moves to this site from somewhere else" ; obo:IAO_0000116 "This relation is intended for cases such as when we have a bone element replacing its cartilage element precursor. Currently most AOs represent this using 'develops from'. We need to decide whether 'develops from' will be generic and encompass replacement, or whether we need a new name for a generic relation that encompasses replacement and development-via-cell-lineage" ; obo:IAO_0000117 ; obo:IAO_0000118 "replaces" . obo:RO_0002286 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "Inverse of developmentally preceded by" ; obo:IAO_0000117 . obo:RO_0002287 obo:IAO_0000112 "'hypopharyngeal eminence' SubClassOf 'part of precursor of' some tongue" ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000117 . obo:RO_0002291 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "x is ubiquitously expressed in y if and only if x is expressed in y, and the majority of cells in y express x" ; obo:IAO_0000116 "Revisit this term after coordinating with SO/SOM. The domain of this relation should be a sequence, as an instance of a DNA molecule is only expressed in the cell of which it is a part." ; obo:IAO_0000117 . obo:RO_0002292 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "y expresses x if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and x was transcribed from a gene as part of the gene expression process (iii) x is a mature gene product (protein or RNA), and x was translated or otherwise processed from a transcript that was transcribed as part of the gene expression process." ; obo:IAO_0000117 . obo:RO_0002293 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "inverse of ubiquiotously expressed in" ; obo:IAO_0000117 . obo:RO_0002295 obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "p results in the developmental progression of s iff p is a developmental process and s is an anatomical entity and p causes s to undergo a change in state at some point along its natural developmental cycle (this cycle starts with its formation, through the mature structure, and ends with its loss)." ; obo:IAO_0000116 "This property and its subproperties are being used primarily for the definition of GO developmental processes. The property hierarchy mirrors the core GO hierarchy. In future we may be able to make do with a more minimal set of properties, but due to the way GO is currently structured we require highly specific relations to avoid incorrect entailments. To avoid this, the corresponding genus terms in GO should be declared mutually disjoint." ; obo:IAO_0000117 . obo:RO_0002296 obo:IAO_0000112 "every flower development (GO:0009908) results in development of some flower (PO:0009046)"@en ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "p 'results in development of' c if and only if p is a developmental process and p results in the state of c changing from its initial state as a primordium or anlage through its mature state and to its final state." ; obo:IAO_0000117 ; obo:IAO_0000119 "http://www.geneontology.org/GO.doc.development.shtml"^^xsd:anyURI . obo:RO_0002297 obo:IAO_0000112 "every \"endocardial cushion formation\" (GO:0003272) results_in_formation_of some \"endocardial cushion\" (UBERON:0002062)"@en , "an annotation of gene X to anatomical structure formation with results_in_formation_of UBERON:0000007 (pituitary gland) means that at the beginning of the process a pituitary gland does not exist and at the end of the process a pituitary gland exists." ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000117 ; obo:IAO_0000119 "GOC:mtg_berkeley_2013" . obo:RO_0002298 obo:IAO_0000112 "tongue morphogenesis (GO:0043587) results in morphogenesis of tongue (UBERON:0001723)"@en , "an annotation of gene X to cell morphogenesis with results_in_morphogenesis_of CL:0000540 (neuron) means that at the end of the process an input neuron has attained its shape." ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "The relationship that links an entity with the process that results in the formation and shaping of that entity over time from an immature to a mature state." ; obo:IAO_0000117 ; obo:IAO_0000119 "GOC:mtg_berkeley_2013" . obo:RO_0002299 obo:IAO_0000112 "bone maturation (GO:0070977) results_in_maturation_of bone (UBERON:0001474)"@en , " an annotation of gene X to cell maturation with results_in_maturation_of CL:0000057 (fibroblast) means that the fibroblast is mature at the end of the process" ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000115 "The relationship that links an entity with a process that results in the progression of the entity over time that is independent of changes in it's shape and results in an end point state of that entity." ; obo:IAO_0000117 ; obo:IAO_0000119 "GOC:mtg_berkeley_2013" . obo:RO_0002300 obo:IAO_0000112 "foramen ovale closure SubClassOf results in disappearance of foramen ovale" ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000117 . obo:RO_0002301 obo:IAO_0000112 "every mullerian duct regression (GO:0001880) results in regression of some mullerian duct (UBERON:0003890)" ; obo:IAO_0000114 obo:IAO_0000125 ; obo:IAO_0000117 . obo:RO_0002302 obo:IAO_0000115 "Inverse of 'is substance that treats'" . obo:RO_0002303 obo:IAO_0000112 """Hydrozoa (NCBITaxon_6074) SubClassOf 'has habitat' some 'Hydrozoa habitat' where 'Hydrozoa habitat' SubClassOf overlaps some ('marine environment' (ENVO_00000569) and 'freshwater environment' (ENVO_01000306) and 'wetland' (ENVO_00000043)) and 'has part' some (freshwater (ENVO_00002011) or 'sea water' (ENVO_00002149)) -- http://eol.org/pages/1795/overview""" ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "x 'has habitat' y if and only if: x is an organism, y is a habitat, and y can sustain and allow the growth of a population of xs." ; obo:IAO_0000117 ; obo:IAO_0000118 "adapted for living in" . obo:RO_0002309 obo:IAO_0000115 "A relationship between an exposure event or process and any agent, stimulus, activity, or event that causally effects an organism and interacts with an exposure receptor during an exposure event." . obo:RO_0002310 obo:IAO_0000112 "An exposure event in which a plant is provided with fertilizer. The exposure receptor is the root system of the plant, the stimulus is the fertilizing chemical, the route is via the soil, possibly mediated by symbotic microbes."^^xsd:anyURI , "An exposure event in which a human is exposed to particulate matter in the air. Here the exposure stimulus/stress is the particulate matter, the receptor is the airways and lungs of the human," ; obo:IAO_0000115 "OBSOLETE A process occurring within or in the vicinity of an organism that exerts some causal influence on the organism via the interaction between an exposure stimulus and an exposure receptor. The exposure stimulus may be a process, material entity or condition (for example, lack of nutrients). The exposure receptor can be an organism, organism population or a part of an organism." ; obo:IAO_0000116 "This class is intended as a grouping for various domain and species-specific exposure classes. The ExO class http://purl.obolibrary.org/obo/ExO_0000002 'exposure event' assumes that all exposures involve stressors, which limits the applicability of this class to 'positive' exposures, e.g. exposing a plant to beneficial growing conditions." . obo:RO_0002312 obo:IAO_0000117 . obo:RO_0002315 obo:IAO_0000112 "an annotation of gene X to cell differentiation with results_in_maturation_of CL:0000057 (fibroblast) means that at the end of the process the input cell that did not have features of a fibroblast, now has the features of a fibroblast." ; obo:IAO_0000115 "The relationship that links a specified entity with the process that results in an unspecified entity acquiring the features and characteristics of the specified entity" ; obo:IAO_0000117 ; obo:IAO_0000119 "GOC:mtg_berkeley_2013" . obo:RO_0002321 obo:IAO_0000115 "A relationship that is mediated in some way by the environment or environmental feature (ENVO:00002297)" ; obo:IAO_0000116 "Awaiting class for domain/range constraint, see: https://github.com/OBOFoundry/Experimental-OBO-Core/issues/6" ; obo:IAO_0000117 . obo:RO_0002322 obo:IAO_0000116 "An experimental relation currently used to connect a feature possessed by an organism (e.g. anatomical structure, biological process, phenotype or quality) to a habitat or environment in which that feature is well suited, adapted or provides a reproductive advantage for the organism. For example, fins to an aquatic environment. Usually this will mean that the structure is adapted for this environment, but we avoid saying this directly - primitive forms of the structure may not have evolved specifically for that environment (for example, early wings were not necessarily adapted for an aerial environment). Note also that this is a statement about the general class of structures - not every instance of a limb need confer an advantage for a terrestrial environment, e.g. if the limb is vestigial." ; obo:IAO_0000117 ; obo:IAO_0000118 "adapted for" . obo:RO_0002324 obo:IAO_0000115 "A relationship that holds between entities participating in some developmental process (GO:0032502)" ; obo:IAO_0000117 . obo:RO_0002325 obo:IAO_0000112 "Clp1p relocalizes from the nucleolus to the spindle and site of cell division; i.e. it is associated transiently with the spindle pole body and the contractile ring (evidence from GFP fusion). Clp1p colocalizes_with spindle pole body (GO:0005816) and contractile ring (GO:0005826)" ; obo:IAO_0000115 "a colocalizes_with b if and only if a is transiently or peripherally associated with b[GO]." ; obo:IAO_0000117 . obo:RO_0002330 obo:IAO_0000115 "holds between two entities when some genome-level process such as gene expression is involved. This includes transcriptional, spliceosomal events. These relations can be used between either macromolecule entities (such as regions of nucleic acid) or between their abstract informational counterparts." ; obo:IAO_0000117 . obo:RO_0002343 obo:IAO_0000112 "'pollen tube growth' results_in growth_of some 'pollen tube'" ; obo:IAO_0000117 . obo:RO_0002348 obo:IAO_0000112 "an annotation of gene X to cell commitment with results_in_commitment_to CL:0000540 (neuron) means that at the end of the process an unspecified cell has been specified and determined to develop into a neuron." ; obo:IAO_0000115 "p 'results in commitment to' c if and only if p is a developmental process and c is a cell and p results in the state of c changing such that is can only develop into a single cell type." ; obo:IAO_0000117 . obo:RO_0002349 obo:IAO_0000115 "p 'results in determination of' c if and only if p is a developmental process and c is a cell and p results in the state of c changing to be determined. Once a cell becomes determined, it becomes committed to differentiate down a particular pathway regardless of its environment." ; obo:IAO_0000117 . obo:RO_0002350 obo:IAO_0000112 "An organism that is a member of a population of organisms" ; obo:IAO_0000115 "is member of is a mereological relation between a item and a collection." ; obo:IAO_0000118 "is member of" , "member part of" ; obo:IAO_0000119 "SIO" . obo:RO_0002351 obo:IAO_0000115 "has member is a mereological relation between a collection and an item." ; obo:IAO_0000119 "SIO" . obo:RO_0002354 obo:IAO_0000117 . obo:RO_0002355 obo:IAO_0000115 "A relationship between a process and an anatomical entity such that the process contributes to the act of creating the structural organization of the anatomical entity." ; obo:IAO_0000117 . obo:RO_0002356 obo:IAO_0000115 "The relationship linking a cell and its participation in a process that results in the fate of the cell being specified. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment. " ; obo:IAO_0000117 . obo:RO_0002357 obo:IAO_0000115 "p results in developmental induction of c if and only if p is a collection of cell-cell signaling processes that signal to a neighbouring tissue that is the precursor of the mature c, where the signaling results in the commitment to cell types necessary for the formation of c." ; obo:IAO_0000117 . obo:RO_0002360 obo:IAO_0000117 . obo:RO_0002371 obo:IAO_0000115 "a is attached to b if and only if a and b are discrete objects or object parts, and there are physical connections between a and b such that a force pulling a will move b, or a force pulling b will move a" ; obo:IAO_0000117 . obo:RO_0002372 obo:IAO_0000115 "m has_muscle_origin s iff m is attached_to s, and it is the case that when m contracts, s does not move. The site of the origin tends to be more proximal and have greater mass than what the other end attaches to."@en ; obo:IAO_0000117 ; obo:IAO_0000119 "Wikipedia:Insertion_(anatomy)"@en . obo:RO_0002373 obo:IAO_0000115 "m has_muscle_insertion s iff m is attaches_to s, and it is the case that when m contracts, s moves. Insertions are usually connections of muscle via tendon to bone."@en ; obo:IAO_0000117 ; obo:IAO_0000119 "Wikipedia:Insertion_(anatomy)"@en . obo:RO_0002374 obo:IAO_0000112 "false"^^xsd:boolean ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "x has_fused_element y iff: there exists some z : x has_part z, z homologous_to y, and y is a distinct element, the boundary between x and z is largely fiat"@en ; obo:IAO_0000117 ; obo:IAO_0000119 ; oboInOwl:hasBroadSynonym "has fused element" . obo:RO_0002375 obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "A relationship that holds between two material entities in a system of connected structures, where the branching relationship holds based on properties of the connecting network." ; obo:IAO_0000117 . obo:RO_0002376 obo:IAO_0000112 "Deschutes River tributary_of Columbia River" , "inferior epigastric vein tributary_of external iliac vein" ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "x tributary_of y if and only if x a channel for the flow of a substance into y, where y is larger than x. If x and y are hydrographic features, then y is the main stem of a river, or a lake or bay, but not the sea or ocean. If x and y are anatomical, then y is a vein." ; obo:IAO_0000117 ; obo:IAO_0000118 "drains into" , "drains to" , "tributary channel of" ; obo:IAO_0000119 "http://en.wikipedia.org/wiki/Tributary" , "http://www.medindia.net/glossary/venous_tributary.htm" . obo:RO_0002377 obo:IAO_0000112 "Deschutes River distributary_of Little Lava Lake" ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "x distributary_of y if and only if x is capable of channeling the flow of a substance to y, where y channels less of the substance than x" ; obo:IAO_0000117 ; obo:IAO_0000118 "branch of" , "distributary channel of" ; obo:IAO_0000119 "http://en.wikipedia.org/wiki/Distributary" . obo:RO_0002378 obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "x anabranch_of y if x is a distributary of y (i.e. it channels a from a larger flow from y) and x ultimately channels the flow back into y." ; obo:IAO_0000117 ; obo:IAO_0000118 "anastomoses with" . obo:RO_0002379 obo:IAO_0000112 "A lump of clay and a statue" ; obo:IAO_0000115 "x spatially_coextensive_with y if and inly if x and y have the same location" ; obo:IAO_0000117 . obo:RO_0002380 obo:IAO_0000112 "In the tree T depicted in https://oborel.github.io/obo-relations/branching_part_of.png, B1 is a (direct) branching part of T. B1-1, B1-2, and B1-3 are also branching parts of T, but these are considered indirect branching parts as they do not directly connect to the main stem S" ; obo:IAO_0000115 "x is a branching part of y if and only if x is part of y and x is connected directly or indirectly to the main stem of y" ; obo:IAO_0000117 . obo:RO_0002381 obo:IAO_0000112 "In the tree T depicted in https://oborel.github.io/obo-relations/branching_part_of.png, S is the main stem of T. There are no other main stems. If we were to slice off S to get a new tree T', rooted at the root of B1, then B1 would be the main stem of T'." ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "x main_stem_of y if y is a branching structure and x is a channel that traces a linear path through y, such that x has higher capacity than any other such path." ; obo:IAO_0000117 . obo:RO_0002382 obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "x proper_distributary_of y iff x distributary_of y and x does not flow back into y" ; obo:IAO_0000117 . obo:RO_0002383 obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "x proper_tributary_of y iff x tributary_of y and x does not originate from y" ; obo:IAO_0000117 . obo:RO_0002384 obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction)."@en ; obo:IAO_0000117 . obo:RO_0002385 obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y"@en ; obo:IAO_0000117 . obo:RO_0002386 obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "x has potential to developmentally induce y iff x developmentally induces y or x is capable of developmentally inducing y"@en ; obo:IAO_0000117 . obo:RO_0002387 obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "x has the potential to develop into y iff x develops into y or if x is capable of developing into y"@en ; obo:IAO_0000117 . obo:RO_0002388 obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y"@en ; obo:IAO_0000117 . obo:RO_0002401 obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000117 . obo:RO_0002402 obo:IAO_0000112 "translation SubClassOf has_direct_output some protein" ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "p has direct input c iff c is a participanti n p, c is present at the end of p, and c is not present at the beginning of c. " ; obo:IAO_0000117 ; obo:IAO_0000118 "directly produces" . obo:RO_0002403 obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000117 . obo:RO_0002419 obo:IAO_0000115 "An assertion that holds between an OWL Annotation Property P and a non-negative integer N, with the interpretation: for any P(i j) it must be the case that | { k : P(i k) } | = N." . obo:RO_0002420 obo:IAO_0000115 "A logical macro assertion whose domain is an IRI for a class" ; obo:IAO_0000116 "The domain for this class can be considered to be owl:Class, but we cannot assert this in OWL2-DL" . obo:RO_0002432 obo:IAO_0000112 "A protein that enables activity in a cytosol." ; obo:IAO_0000115 "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure." ; obo:IAO_0000117 ; obo:IAO_0000118 "executes activity in" ; oboInOwl:hasExactSynonym "enables activity in" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0002432 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure." ; oboInOwl:hasDbXref , ] . obo:RO_0002433 obo:IAO_0000115 "p contributes to morphology of w if and only if a change in the morphology of p entails a change in the morphology of w. Examples: every skull contributes to morphology of the head which it is a part of. Counter-example: nuclei do not generally contribute to the morphology of the cell they are part of, as they are buffered by cytoplasm." ; obo:IAO_0000117 . obo:RO_0002435 obo:IAO_0000116 "An interaction that holds between two genetic entities (genes, alleles) through some genetic interaction (e.g. epistasis)" ; obo:IAO_0000117 . obo:RO_0002436 obo:IAO_0000115 "An interaction relationship in which the two partners are molecular entities that directly physically interact with each other for example via a stable binding interaction or a brief interaction during which one modifies the other." ; obo:IAO_0000117 ; obo:IAO_0000118 "binds" , "molecularly binds with" . obo:RO_0002437 obo:IAO_0000115 "An interaction relationship in which at least one of the partners is an organism and the other is either an organism or an abiotic entity with which the organism interacts." ; obo:IAO_0000117 ; obo:IAO_0000118 "interacts with on organism level" . obo:RO_0002438 obo:IAO_0000115 "An interaction relationship in which the partners are related via a feeding relationship." ; obo:IAO_0000117 . obo:RO_0002439 obo:IAO_0000112 "A wasp killing a Monarch larva in order to feed to offspring [http://www.inaturalist.org/observations/2942824]" , "Baleen whale preys on krill" ; obo:IAO_0000115 "An interaction relationship involving a predation process, where the subject kills the target in order to eat it or to feed to siblings, offspring or group members" ; obo:IAO_0000117 , , ; obo:IAO_0000118 "is subject of predation interaction with" , "preys upon" . obo:RO_0002440 obo:IAO_0000115 "A biotic interaction in which the two organisms live together in more or less intimate association." ; obo:IAO_0000117 ; obo:IAO_0000119 "http://www.ncbi.nlm.nih.gov/pubmed/19278549"^^xsd:anyURI . obo:RO_0002441 obo:IAO_0000115 "An interaction relationship between two organisms living together in more or less intimate association in a relationship in which one benefits and the other is unaffected (GO)." ; obo:IAO_0000117 ; obo:IAO_0000119 "http://www.ncbi.nlm.nih.gov/pubmed/19278549"^^xsd:anyURI . obo:RO_0002442 obo:IAO_0000115 "An interaction relationship between two organisms living together in more or less intimate association in a relationship in which both organisms benefit from each other (GO)." ; obo:IAO_0000117 ; obo:IAO_0000119 "http://www.ncbi.nlm.nih.gov/pubmed/19278549"^^xsd:anyURI . obo:RO_0002443 obo:IAO_0000115 "An interaction relationship between two organisms living together in more or less intimate association in a relationship in which association is disadvantageous or destructive to one of the organisms (GO)." ; obo:IAO_0000117 ; obo:IAO_0000119 "http://www.ncbi.nlm.nih.gov/pubmed/19278549"^^xsd:anyURI . obo:RO_0002444 obo:IAO_0000112 "Pediculus humanus capitis parasite of human" ; obo:IAO_0000115 "A parasite-host relationship where an organism benefits at the expense of another." ; obo:IAO_0000117 ; obo:IAO_0000118 "parasitizes" ; oboInOwl:hasExactSynonym "direct parasite of" . obo:RO_0002445 obo:IAO_0000115 "Inverse of parasite of" ; obo:IAO_0000117 ; obo:IAO_0000118 "has parasite" , "parasitised by" ; oboInOwl:hasExactSynonym "directly parasitized by" . obo:RO_0002446 obo:IAO_0000112 "Porifiera attaches to substrate" ; obo:IAO_0000115 "A biotic interaction relationship in which one partner is an organism and the other partner is inorganic. For example, the relationship between a sponge and the substrate to which is it anchored." ; obo:IAO_0000117 ; oboInOwl:hasRelatedSynonym "semibiotically interacts with" . obo:RO_0002447 obo:IAO_0000116 "Axiomatization to GO to be added later" ; obo:IAO_0000117 ; obo:IAO_0000118 "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y." . obo:RO_0002451 obo:IAO_0000112 "all dengue disease transmitted by some mosquito" ; obo:IAO_0000115 "A relationship that holds between a disease and organism" ; obo:IAO_0000116 "Add domain and range constraints" ; obo:IAO_0000117 . obo:RO_0002452 obo:IAO_0000115 "A relation that holds between a disease or an organism and a phenotype" ; obo:IAO_0000117 . obo:RO_0002453 obo:IAO_0000117 . obo:RO_0002454 obo:IAO_0000115 "X 'has host' y if and only if: x is an organism, y is an organism, and x can live on the surface of or within the body of y" ; obo:IAO_0000117 . obo:RO_0002455 obo:IAO_0000112 "Bees pollinate Flowers" ; obo:IAO_0000116 "This relation is intended to be used for biotic pollination - e.g. a bee pollinating a flowering plant. Some kinds of pollination may be semibiotic - e.g. wind can have the role of pollinator. We would use a separate relation for this." ; obo:IAO_0000117 ; obo:IAO_0000118 "is subject of pollination interaction with" . obo:RO_0002456 obo:IAO_0000117 ; obo:IAO_0000118 "has polinator" , "is target of pollination interaction with" . obo:RO_0002457 obo:IAO_0000115 "Inverse of provides nutrients for" ; obo:IAO_0000117 . obo:RO_0002458 obo:IAO_0000115 "inverse of preys on" ; obo:IAO_0000117 ; obo:IAO_0000118 "has predator" , "is target of predation interaction with" . obo:RO_0002459 obo:IAO_0000112 "Anopheles is a vector for Plasmodium" ; obo:IAO_0000117 ; obo:IAO_0000119 "a is a vector for b if a carries and transmits an infectious pathogen b into another living organism" . obo:RO_0002460 obo:IAO_0000117 . obo:RO_0002464 obo:IAO_0000117 . obo:RO_0002465 obo:IAO_0000117 . obo:RO_0002466 obo:IAO_0000117 . obo:RO_0002467 obo:IAO_0000117 . obo:RO_0002468 obo:IAO_0000117 . obo:RO_0002469 obo:IAO_0000115 "A biotic interaction where a material entity provides nutrition for an organism." ; obo:IAO_0000117 . obo:RO_0002470 obo:IAO_0000115 "A biotic interaction where one organism consumes a material entity through a type of mouth or other oral opening." ; obo:IAO_0000117 ; obo:IAO_0000118 "is subject of eating interaction with" . obo:RO_0002471 obo:IAO_0000115 "Inverse of eats" ; obo:IAO_0000117 ; obo:IAO_0000118 "eaten by" , "is target of eating interaction with" . obo:RO_0002472 obo:IAO_0000115 """A relationship between a piece of evidence a and some entity b, where b is an information content entity, material entity or process, and the a supports either the existence of b, or the truth value of b.""" ; obo:IAO_0000117 . obo:RO_0002473 obo:IAO_0000112 "'otolith organ' SubClassOf 'composed primarily of' some 'calcium carbonate'" ; obo:IAO_0000115 "x composed_primarily_of y if and only if more than half of the mass of x is made from y or units of the same type as y." ; obo:IAO_0000117 ; obo:IAO_0000119 . obo:RO_0002474 obo:IAO_0000115 "An assertion that holds between an OWL Object Property and a dispositional interpretation that elucidates how OWL Class Axioms or OWL Individuals that use this property are to be interpreted in a dispositional context. For example, A binds B may be interpreted as A have a mutual disposition that is realized by binding to the other one." . obo:RO_0002475 obo:IAO_0000112 "'pectoral appendage skeleton' has no connections with 'pelvic appendage skeleton'" ; obo:IAO_0000115 "A is has_no_connections_with B if there are no parts of A or B that have a connection with the other." ; obo:IAO_0000118 "shares no connection with" . obo:RO_0002476 obo:IAO_0000112 "ABal nucleus child nucleus of ABa nucleus (in C elegans)" ; obo:IAO_0000115 "c is a child nucleus of d if and only if c and d are both nuclei and parts of cells c' and d', where c' is derived from d' by mitosis and the genetic material in c is a copy of the generic material in d" ; obo:IAO_0000117 . obo:RO_0002477 obo:IAO_0000115 "A child nucleus relationship in which the cells are part of a hermaphroditic organism" ; obo:IAO_0000117 . obo:RO_0002478 obo:IAO_0000115 "A child nucleus relationship in which the cells are part of a male organism" ; obo:IAO_0000117 . obo:RO_0002480 obo:IAO_0000115 "An interaction relation between x and y in which x catalyzes a reaction in which one or more ubiquitin groups are added to y" ; obo:IAO_0000116 "Axiomatization to GO to be added later" ; obo:IAO_0000117 . obo:RO_0002481 obo:IAO_0000117 . obo:RO_0002482 obo:IAO_0000117 . obo:RO_0002484 obo:IAO_0000115 "Connects an ontology entity (class, property, etc) to a URL from which curator guidance can be obtained. This assertion is inherited in the same manner as functional annotations (e.g. for GO, over SubClassOf and part_of)" . obo:RO_0002485 obo:IAO_0000116 "See notes for inverse relation" ; obo:IAO_0000117 . obo:RO_0002486 obo:IAO_0000116 "This is an exploratory relation. The label is taken from the FMA. It needs aligned with the neuron-specific relations such as has postsynaptic terminal in." ; obo:IAO_0000117 . obo:RO_0002494 obo:IAO_0000115 "x transformation of y if x is the immediate transformation of y, or is linked to y through a chain of transformation relationships" ; obo:IAO_0000117 . obo:RO_0002495 obo:IAO_0000115 "x immediate transformation of y iff x immediately succeeds y temporally at a time boundary t, and all of the matter present in x at t is present in y at t, and all the matter in y at t is present in x at t" ; obo:IAO_0000117 . obo:RO_0002503 obo:IAO_0000115 "q towards e2 if and only if q is a relational quality such that q inheres-in some e, and e != e2 and q is dependent on e2" ; obo:IAO_0000116 "This relation is provided in order to support the use of relational qualities such as 'concentration of'; for example, the concentration of C in V is a quality that inheres in V, but pertains to C." ; obo:IAO_0000117 ; obo:IAO_0000119 . obo:RO_0002504 obo:IAO_0000112 "brain always_present_in_taxon 'Vertebrata'" , "forelimb always_present_in_taxon Euarchontoglires" ; obo:IAO_0000115 "S always_present_in_taxon T if every fully formed member of taxon T has part some S, or is an instance of S" ; obo:IAO_0000116 "This is a very strong relation. Often we will not have enough evidence to know for sure that there are no species within a lineage that lack the structure - loss is common in evolution. However, there are some statements we can make with confidence - no vertebrate lineage could persist without a brain or a heart. All primates are limbed. " ; obo:IAO_0000118 "never lost in" . obo:RO_0002510 obo:IAO_0000115 "x is transcribed from y if and only if x is synthesized from template y" ; obo:IAO_0000117 ; obo:IAO_0000119 "http://www.ncbi.nlm.nih.gov/pubmed/20226267"^^xsd:anyURI . obo:RO_0002511 obo:IAO_0000115 "inverse of transcribed from" ; obo:IAO_0000117 ; obo:IAO_0000119 "http://www.ncbi.nlm.nih.gov/pubmed/20226267"^^xsd:anyURI . obo:RO_0002512 obo:IAO_0000115 "x is the ribosomal translation of y if and only if a ribosome reads x through a series of triplet codon-amino acid adaptor activities (GO:0030533) and produces y" ; obo:IAO_0000117 ; obo:IAO_0000119 "http://www.ncbi.nlm.nih.gov/pubmed/20226267"^^xsd:anyURI . obo:RO_0002513 obo:IAO_0000115 "inverse of ribosomal translation of" ; obo:IAO_0000117 ; obo:IAO_0000119 "http://www.ncbi.nlm.nih.gov/pubmed/20226267"^^xsd:anyURI . obo:RO_0002514 obo:IAO_0000115 "A relation that holds between two entities that have the property of being sequences or having sequences. " ; obo:IAO_0000117 ; obo:IAO_0000119 "http://www.ncbi.nlm.nih.gov/pubmed/20226267"^^xsd:anyURI . obo:RO_0002515 obo:IAO_0000112 "Every UTR is adjacent to a CDS of the same transcript" , "Two consecutive DNA residues are sequentially adjacent" , "Two exons on a processed transcript that were previously connected by an intron are adjacent" ; obo:IAO_0000115 "x is sequentially adjacent to y iff x and y do not overlap and if there are no base units intervening between x and y" ; obo:IAO_0000117 ; obo:IAO_0000119 "http://www.ncbi.nlm.nih.gov/pubmed/20226267"^^xsd:anyURI . obo:RO_0002516 obo:IAO_0000112 "Every CDS has as a start sequence the start codon for that transcript" ; obo:IAO_0000115 "x has start sequence y if the start of x is identical to the start of y, and x has y as a subsequence" ; obo:IAO_0000117 ; obo:IAO_0000118 "started by" ; obo:IAO_0000119 "http://www.ncbi.nlm.nih.gov/pubmed/20226267"^^xsd:anyURI . obo:RO_0002517 obo:IAO_0000115 "inverse of has start sequence" ; obo:IAO_0000117 ; obo:IAO_0000118 "starts" ; obo:IAO_0000119 "http://www.ncbi.nlm.nih.gov/pubmed/20226267"^^xsd:anyURI . obo:RO_0002518 obo:IAO_0000112 "Every CDS has as an end sequence the stop codon for that transcript (note this follows from the SO definition of CDS, in which stop codons are included)" ; obo:IAO_0000115 "x has end sequence y if the end of x is identical to the end of y, and x has y as a subsequence" ; obo:IAO_0000117 ; obo:IAO_0000118 "ended by" ; obo:IAO_0000119 "http://www.ncbi.nlm.nih.gov/pubmed/20226267"^^xsd:anyURI . obo:RO_0002519 obo:IAO_0000115 "inverse of has end sequence" ; obo:IAO_0000117 ; obo:IAO_0000118 "ends" ; obo:IAO_0000119 "http://www.ncbi.nlm.nih.gov/pubmed/20226267"^^xsd:anyURI . obo:RO_0002520 obo:IAO_0000115 "x is a consecutive sequence of y iff x has subsequence y, and all the parts of x are made of zero or more repetitions of y or sequences as the same type as y." ; obo:IAO_0000116 "In the SO paper, this was defined as an instance-type relation" ; obo:IAO_0000117 ; obo:IAO_0000119 "http://www.ncbi.nlm.nih.gov/pubmed/20226267"^^xsd:anyURI . obo:RO_0002521 obo:IAO_0000112 "Human Shh and Mouse Shh are sequentially aligned, by cirtue of the fact that they derive from the same ancestral sequence." ; obo:IAO_0000115 "x is sequentially aligned with if a significant portion bases of x and y correspond in terms of their base type and their relative ordering" ; obo:IAO_0000117 . obo:RO_0002522 obo:IAO_0000112 "The genomic exons of a transcript bound the sequence of the genomic introns of the same transcript (but the introns are not subsequences of the exons)" ; obo:IAO_0000115 "x bounds the sequence of y iff the upstream-most part of x is upstream of or coincident with the upstream-most part of y, and the downstream-most part of x is downstream of or coincident with the downstream-most part of y" ; obo:IAO_0000117 . obo:RO_0002523 obo:IAO_0000115 "inverse of bounds sequence of" ; obo:IAO_0000117 . obo:RO_0002524 obo:IAO_0000115 "x has subsequence y iff all of the sequence parts of y are sequence parts of x" ; obo:IAO_0000117 ; obo:IAO_0000118 "contains" ; obo:IAO_0000119 "http://www.ncbi.nlm.nih.gov/pubmed/20226267"^^xsd:anyURI . obo:RO_0002525 obo:IAO_0000115 "inverse of has subsequence" ; obo:IAO_0000117 ; obo:IAO_0000118 "contained by" . obo:RO_0002526 obo:IAO_0000115 "x overlaps the sequence of y if and only if x has a subsequence z and z is a subsequence of y." ; obo:IAO_0000117 . obo:RO_0002527 obo:IAO_0000115 "x does not overlap the sequence of y if and only if there is no z such that x has a subsequence z and z is a subsequence of y." ; obo:IAO_0000117 ; obo:IAO_0000118 "disconnected from" . obo:RO_0002528 obo:IAO_0000115 "inverse of downstream of sequence of" ; obo:IAO_0000117 . obo:RO_0002529 obo:IAO_0000115 "x is downstream of the sequence of y iff either (1) x and y have sequence units, and all units of x are downstream of all units of y, or (2) x and y are sequence units, and x is either immediately downstream of y, or transitively downstream of y." ; obo:IAO_0000117 . obo:RO_0002530 obo:IAO_0000112 "A 3'UTR is immediately downstream of the sequence of the CDS from the same monocistronic transcript" ; obo:IAO_0000115 "x is immediately downstream of the sequence of y iff either (1) x and y have sequence units, and all units of x are downstream of all units of y, and x is sequentially adjacent to y, or (2) x and y are sequence units, in which case the immediately downstream relation is primitive and defined by context: for DNA bases, y would be adjacent and 5' to y" ; obo:IAO_0000117 . obo:RO_0002531 obo:IAO_0000112 "A 5'UTR is immediately upstream of the sequence of the CDS from the same monocistronic transcript" ; obo:IAO_0000115 "inverse of immediately downstream of" ; obo:IAO_0000117 . obo:RO_0002532 obo:IAO_0000115 "Any entity that is ordered in discrete units along a linear axis." ; obo:IAO_0000117 . obo:RO_0002533 obo:IAO_0000115 "Any individual unit of a collection of like units arranged in a linear order" ; obo:IAO_0000117 . obo:RO_0002534 obo:IAO_0000115 "Any entity that can be divided into parts such that each part is an atomical unit of a sequence" ; obo:IAO_0000117 . obo:RO_0002539 obo:IAO_0000115 "Count of number of days intervening between the start of the stage and the time of fertilization according to a reference model. Note that the first day of development has the value of 0 for this property." . obo:RO_0002540 obo:IAO_0000115 "Count of number of days intervening between the end of the stage and the time of fertilization according to a reference model. Note that the first day of development has the value of 1 for this property." . obo:RO_0002541 obo:IAO_0000115 "Count of number of years intervening between the start of the stage and the time of birth according to a reference model. Note that the first year of post-birth development has the value of 0 for this property, and the period during which the child is one year old has the value 1." . obo:RO_0002542 obo:IAO_0000115 "Count of number of years intervening between the end of the stage and the time of birth according to a reference model. Note that the first year of post-birth development has the value of 1 for this property, and the period during which the child is one year old has the value 2" . obo:RO_0002543 obo:IAO_0000115 "Count of number of months intervening between the start of the stage and the time of birth according to a reference model. Note that the first month of post-birth development has the value of 0 for this property, and the period during which the child is one month old has the value 1." . obo:RO_0002544 obo:IAO_0000115 "Count of number of months intervening between the end of the stage and the time of birth according to a reference model. Note that the first month of post-birth development has the value of 1 for this property, and the period during which the child is one month old has the value 2" . obo:RO_0002545 obo:IAO_0000115 "Defines the start and end of a stage with a duration of 1 month, relative to either the time of fertilization or last menstrual period of the mother (to be clarified), counting from one, in terms of a reference model. Thus if month_of_gestation=3, then the stage is 2 month in." . obo:RO_0002546 obo:IAO_0000115 "A relationship between a stage class and an anatomical structure or developmental process class, in which the stage is characterized by the appearance of the structure or the occurrence of the biological process" . obo:RO_0002547 obo:IAO_0000115 "Count of number of days intervening between the start of the stage and the time of coitum." . obo:RO_0002548 obo:IAO_0000115 "Count of number of days intervening between the end of the stage and the time of coitum." . obo:RO_0002551 obo:IAO_0000112 "Forelimb SubClassOf has_skeleton some 'Forelimb skeleton'" ; obo:IAO_0000115 "A relation between a segment or subdivision of an organism and the maximal subdivision of material entities that provides structural support for that segment or subdivision." ; obo:IAO_0000117 ; obo:IAO_0000118 "has supporting framework" . obo:RO_0002552 obo:IAO_0000115 "p results in the end of s if p results in a change of state in s whereby s either ceases to exist, or s becomes functionally impaired or s has its fate committed such that it is put on a path to be degraded." ; obo:IAO_0000117 . obo:RO_0002553 obo:IAO_0000115 "x is a hyperparasite of y iff x is a parasite of a parasite of the target organism y" ; obo:IAO_0000116 "Note that parasite-of is a diret relationship, so hyperparasite-of is not considered a sub-relation, even though hyperparasitism can be considered a form of parasitism" ; obo:IAO_0000117 ; obo:IAO_0000119 "http://eol.org/schema/terms/hyperparasitoidOf" , "https://en.wikipedia.org/wiki/Hyperparasite" ; oboInOwl:hasNarrowSynonym "hyperparasitoid of" ; oboInOwl:hasRelatedSynonym "epiparasite of" . obo:RO_0002554 obo:IAO_0000115 "inverse of hyperparasite of" ; obo:IAO_0000117 ; oboInOwl:hasRelatedSynonym "has epiparasite" , "has hyperparasite" , "hyperparasitoidized by" . obo:RO_0002555 obo:IAO_0000117 ; obo:IAO_0000119 "http://en.wikipedia.org/wiki/Allelopathy" . obo:RO_0002556 obo:IAO_0000115 "Inverse of has pathogen" ; obo:IAO_0000117 . obo:RO_0002557 obo:IAO_0000115 "A host interaction where the smaller of the two members of a symbiosis causes a disease in the larger member" ; obo:IAO_0000117 . obo:RO_0002558 obo:IAO_0000115 "inverse of is evidence for" ; obo:IAO_0000117 ; obo:IAO_0000119 . obo:RO_0002560 obo:IAO_0000115 "If Rel is the relational form of a process Pr, then it follow that: Rel(x,y) <-> exists p : Pr(p), x subject-partner-in p, y object-partner-in p" . obo:RO_0002561 obo:IAO_0000115 "If Rel is the relational form of a process Pr, then it follow that: Rel(x,y) <-> exists p : Pr(p), x partner-in p, y partner-in p" . obo:RO_0002562 obo:IAO_0000115 "R is the relational form of a process if and only if either (1) R is the symmetric relational form of a process or (2) R is the asymmetric relational form of a process" . obo:RO_0002563 obo:IAO_0000117 . obo:RO_0002564 obo:IAO_0000117 . obo:RO_0002565 obo:IAO_0000115 "Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c" ; obo:IAO_0000117 . obo:RO_0002567 obo:IAO_0000115 "A relation that holds between elements of a musculoskeletal system or its analogs." ; obo:IAO_0000117 . obo:RO_0002568 obo:IAO_0000115 "m1 has_muscle_antagonist m2 iff m1 has_muscle_insertion s, m2 has_muscle_insection s, m1 acts in opposition to m2, and m2 is responsible for returning the structure to its initial position." ; obo:IAO_0000117 ; obo:IAO_0000119 "Wikipedia:Antagonist_(muscle)" . obo:RO_0002569 obo:IAO_0000115 "inverse of branching part of" ; obo:IAO_0000117 . obo:RO_0002570 obo:IAO_0000115 "x is a conduit for y iff y overlaps through the lumen_of of x, and y has parts on either side of the lumen of x." ; obo:IAO_0000117 ; obo:IAO_0000119 "UBERON:cjm" . obo:RO_0002571 obo:IAO_0000115 "x lumen_of y iff x is the space or substance that is part of y and does not cross any of the inner membranes or boundaries of y that is maximal with respect to the volume of the convex hull." ; obo:IAO_0000117 ; obo:IAO_0000119 . obo:RO_0002572 obo:IAO_0000115 "s is luminal space of x iff s is lumen_of x and s is an immaterial entity" ; obo:IAO_0000117 . obo:RO_0002574 obo:IAO_0000117 . obo:RO_0002576 obo:IAO_0000115 "inverse of has skeleton" ; obo:IAO_0000117 . obo:RO_0002581 obo:IAO_0000115 "If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL" . obo:RO_0002582 obo:IAO_0000115 "If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R." . obo:RO_0002585 obo:IAO_0000116 "p 'results in closure of' c if and only if p is a developmental process and p results in a state of c changing from open to closed." . obo:RO_0002586 obo:IAO_0000115 "p results in breakdown of c if and only if the execution of p leads to c no longer being present at the end of p" . obo:RO_0002589 obo:IAO_0000115 "p results in catabolism of c if and only if p is a catabolic process, and the execution of p results in c being broken into smaller parts with energy being released." . obo:RO_0002592 obo:IAO_0000115 "p results in organization of c iff p results in the assembly, arrangement of constituent parts, or disassembly of c" . obo:RO_0002594 obo:IAO_0000115 "An annotation property that connects an object property to a class, where the object property is derived from or a shortcut property for the class. The exact semantics of this annotation may vary on a case by case basis." . obo:RO_0002599 obo:IAO_0000112 "pazopanib -> pathological angiogenesis" ; obo:IAO_0000115 "Holds between a material entity c and a pathological process p if and only if c is capable of some activity a, where a inhibits p." ; obo:IAO_0000118 "treats" ; obo:IAO_0000119 . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0002599 ; owl:annotatedProperty obo:IAO_0000118 ; owl:annotatedTarget "treats" ; rdfs:comment "Usage of the term 'treats' applies when we believe there to be a an inhibitory relationship" ] . obo:RO_0002601 obo:IAO_0000115 "A shortcut relationship that holds between two entities based on their identity criteria" . obo:RO_0002602 obo:IAO_0000115 "A shortcut relationship between two entities x and y1, such that the intent is that the relationship is functional and inverse function, but there is no guarantee that this property holds." . obo:RO_0002603 obo:IAO_0000115 "x is approximately equivalent to y if it is the case that x is equivalent, identical or near-equivalent to y" . obo:RO_0002604 obo:IAO_0000112 "'anterior end of organism' is-opposite-of 'posterior end of organism'" , "'increase in temperature' is-opposite-of 'decrease in temperature'" ; obo:IAO_0000115 "x is the opposite of y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x)." . obo:RO_0002605 obo:IAO_0000115 "x is indistinguishable from y if there exists some distance metric M, and there exists no z such as M(x,z) <= M(x,y) or M(y,z) <= M(y,x)." . obo:RO_0002606 obo:IAO_0000115 "c is a substance that treats d if c is a material entity (such as a small molecule or compound) and d is a pathological process, phenotype or disease, and c is capable of some activity that negative regulates or decreases the magnitude of d." ; obo:IAO_0000118 "treats" ; obo:IAO_0000119 . obo:RO_0002607 obo:IAO_0000115 "c is marker for d iff the presence or occurrence of d is correlated with the presence of occurrence of c, and the observation of c is used to infer the presence or occurrence of d. Note that this does not imply that c and d are in a direct causal relationship, as it may be the case that there is a third entity e that stands in a direct causal relationship with c and d." ; obo:IAO_0000116 "May be ceded to OBI" . obo:RO_0002609 obo:IAO_0000115 "A relationship that holds between two entities, where the relationship holds based on the presence or absence of statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes." . obo:RO_0002610 obo:IAO_0000115 "A relationship that holds between two entities, where the entities exhibit a statistical dependence relationship. The entities may be statistical variables, or they may be other kinds of entities such as diseases, chemical entities or processes." . obo:RO_0002612 obo:IAO_0000115 "A relationship between a sentence and an instance of a piece of evidence in which the evidence supports the axiom" . obo:RO_0002613 obo:IAO_0000115 "A relationship between a sentence and an instance of a piece of evidence in which the evidence contradicts the axiom" . obo:RO_0002614 obo:IAO_0000112 "An instance of a sequence similarity evidence (ECO:0000044) that uses a homologous sequence UniProtKB:P12345 as support." ; obo:IAO_0000115 "A relationship between a piece of evidence and an entity that plays a role in supporting that evidence." . obo:RO_0002617 obo:IAO_0000112 "In the context of a particular project, the IRI with CURIE NCBIGene:64327 (which in this example denotes a class) is considered to be representative. This means that if we have equivalent classes with IRIs OMIM:605522, ENSEMBL:ENSG00000105983, HGNC:13243 forming an equivalence set, the NCBIGene is considered the representative member IRI. Depending on the policies of the project, the classes may be merged, or the NCBIGene IRI may be chosen as the default in a user interface context." ; obo:IAO_0000115 "this property relates an IRI to the xsd boolean value \"True\" if the IRI is intended to be the representative IRI for a collection of classes that are mutually equivalent." . obo:RO_0002626 obo:IAO_0000119 "https://github.com/jhpoelen/eol-globi-data/issues/143" . obo:RO_0002632 obo:IAO_0000115 "A sub-relation of parasite-of in which the parasite lives on or in the integumental system of the host" ; obo:IAO_0000119 . obo:RO_0002633 obo:IAO_0000115 "inverse of ectoparasite of" . obo:RO_0002634 obo:IAO_0000119 , "A sub-relation of parasite-of in which the parasite lives inside the host, beneath the integumental system" ; oboInOwl:hasRelatedSynonym "lives inside of" . obo:RO_0002636 obo:IAO_0000115 "A sub-relation of parasite-of in which the parasite is partially an endoparasite and partially an ectoparasite" . obo:RO_0002637 obo:IAO_0000115 "inverse of mesoparasite of" . obo:RO_0002638 obo:IAO_0000115 "A sub-relation of endoparasite-of in which the parasite inhabits the spaces between host cells." ; obo:IAO_0000119 . obo:RO_0002639 obo:IAO_0000115 "inverse of intercellular endoparasite of" . obo:RO_0002640 obo:IAO_0000115 "A sub-relation of endoparasite-of in which the parasite inhabits host cells." ; obo:IAO_0000119 . obo:RO_0002641 obo:IAO_0000115 "inverse of intracellular endoparasite of" . obo:RO_0002801 obo:IAO_0000115 "Two or more individuals sharing the same roost site (cave, mine, tree or tree hollow, animal burrow, leaf tent, rock crack, space in man-made structure, etc.). Individuals that are sharing a communal roost may be said to be co-roosting. The roost may be either a day roost where the individuals rest during daytime hours, or a night roost where individuals roost to feed, groom, or rest in between flights and/or foraging bouts. Communal roosting as thus defined is an umbrella term within which different specialized types -- which are not mutually exclusive -- may be recognized based on taxonomy and the temporal and spatial relationships of the individuals that are co-roosting."@en ; obo:IAO_0000119 . obo:RO_0002802 obo:IAO_0000112 "An individual of species Camelus dromedarius (commonly known as dromedary camels) is a reservoir host of an individual of Middle East respiratory syndrome–related coronavirus (MERS-CoV) since at least the 1980s." ; obo:IAO_0000115 "A relation between a host organism and a hosted organism in which the hosted organism naturally occurs in an indefinitely maintained reservoir provided by the host." ; obo:IAO_0000119 . obo:RO_0002803 obo:IAO_0000112 "An individual of Middle East respiratory syndrome–related coronavirus (MERS-CoV) has an individual of species Camelus dromedarius (commonly known as dromedary camels) as their reservoir host since at least the 1980s." ; obo:IAO_0000115 "inverse of reservoir host of" . obo:RO_0003302 obo:IAO_0000112 """The genetic variant 'NM_007294.3(BRCA1):c.110C>A (p.Thr37Lys)' casues or contributes to the disease 'familial breast-ovarian cancer'. An environment of exposure to arsenic causes or contributes to the phenotype of patchy skin hyperpigmentation, and the disease 'skin cancer'.""" ; obo:IAO_0000115 "A relationship between an entity (e.g. a genotype, genetic variation, chemical, or environmental exposure) and a condition (a phenotype or disease), where the entity has some causal or contributing role that influences the condition." ; obo:IAO_0000116 "Note that relationships of phenotypes to organisms/strains that bear them, or diseases they are manifest in, should continue to use RO:0002200 ! 'has phenotype' and RO:0002201 ! 'phenotype of'." . obo:RO_0003303 obo:IAO_0000115 "A relationship between an entity (e.g. a genotype, genetic variation, chemical, or environmental exposure) and a condition (a phenotype or disease), where the entity has some causal role for the condition." . obo:RO_0003304 obo:IAO_0000115 "A relationship between an entity (e.g. a genotype, genetic variation, chemical, or environmental exposure) and a condition (a phenotype or disease), where the entity has some contributing role that influences the condition." . obo:RO_0003305 obo:IAO_0000115 "A relationship between an entity (e.g. a genotype, genetic variation, chemical, or environmental exposure) and a condition (a phenotype or disease), where the entity influences the severity with which a condition manifests in an individual." ; obo:IAO_0000118 "contributes to expressivity of condition" . obo:RO_0003306 obo:IAO_0000115 "A relationship between an entity (e.g. a genotype, genetic variation, chemical, or environmental exposure) and a condition (a phenotype or disease), where the entity influences the frequency of the condition in a population." ; obo:IAO_0000118 "contributes to penetrance of condition" . obo:RO_0003307 obo:IAO_0000115 "A relationship between an entity (e.g. a genotype, genetic variation, chemical, or environmental exposure) and a condition (a phenotype or disease), where the presence of the entity reduces or eliminates some or all aspects of the condition." ; obo:IAO_0000118 "is preventative for condition" . obo:RO_0003308 obo:IAO_0000115 "A relationship between an entity and a condition (phenotype or disease) with which it exhibits a statistical dependence relationship." . obo:RO_0003309 obo:IAO_0000115 "A relationship between an entity (e.g. a chemical, environmental exposure, or some form of genetic variation) and a condition (a phenotype or disease), where the presence of the entity worsens some or all aspects of the condition." . obo:RO_0003310 obo:IAO_0000115 "A relationship between a condition (a phenotype or disease) and an entity (e.g. a chemical, environmental exposure, or some form of genetic variation) where some or all aspects of the condition are reduced or eliminated by the presence of the entity." . obo:RO_0003311 obo:IAO_0000115 "A relationship between a condition (a phenotype or disease) and an entity (e.g. a chemical, environmental exposure, or some form of genetic variation) where some or all aspects of the condition are worsened by the presence of the entity." . obo:RO_0004011 obo:IAO_0000115 "Relates a gene to condition, such that a mutation in this gene in a germ cell provides a new function of the corresponding product and that is sufficient to produce the condition and that can be passed on to offspring[modified from orphanet]." . obo:RO_0004012 obo:IAO_0000115 "Relates a gene to condition, such that a mutation in this gene in a germ cell impairs the function of the corresponding product and that is sufficient to produce the condition and that can be passed on to offspring[modified from orphanet]." . obo:RO_0004013 obo:IAO_0000115 "Relates a gene to condition, such that a mutation in this gene is sufficient to produce the condition and that can be passed on to offspring[modified from orphanet]." . obo:RO_0004014 obo:IAO_0000115 "Relates a gene to condition, such that a mutation in this gene is sufficient to produce the condition but that cannot be passed on to offspring[modified from orphanet]." . obo:RO_0004015 obo:IAO_0000115 "Relates a gene to condition, such that a mutation in this gene predisposes to the development of a condition and that is necessary but not sufficient to develop the condition[modified from orphanet]." . obo:RO_0004016 obo:IAO_0000115 "Relates a gene to condition, such that a mutation in this gene partially contributes to the presentation of this condition[modified from orphanet]." . obo:RO_0004020 obo:IAO_0000115 "A relation that holds between the disease and a material entity where the physical basis of the disease is a disorder of that material entity that affects its function." . obo:RO_0004021 obo:IAO_0000115 "A relation that holds between the disease and a process where the physical basis of the disease disrupts execution of a key biological process." . obo:RO_0004022 obo:IAO_0000115 "A relation that holds between the disease and a feature (a phenotype or other disease) where the physical basis of the disease is the feature." . obo:RO_0004024 obo:IAO_0000115 "A relationship between a disease and a process where the disease process disrupts the execution of the process." . obo:RO_0004026 obo:IAO_0000115 "A relationship between a disease and an anatomical entity where the disease has one or more features that are located in that entity." ; obo:IAO_0000116 "TODO: complete range axiom once more of CARO has been mireoted in to this ontology" . obo:RO_0004027 obo:IAO_0000115 "A relationship between a disease and an anatomical entity where the disease is triggered by an inflammatory response to stimuli occurring in the anatomical entity" . obo:RO_0004029 obo:IAO_0000115 "A relationship between a disease and some feature of that disease, where the feature is either a phenotype or an isolated disease." . obo:RO_0004030 obo:IAO_0000115 "A relationship between a disease and an anatomical structure where the material basis of the disease is some pathological change in the structure. Anatomical structure includes cellular and sub-cellular entities, such as chromosome and organelles." . obo:RO_0004036 obo:IAO_0000115 "true if the two properties are disjoint, according to OWL semantics. This should only be used if using a logical axiom introduces a non-simple property violation." . obo:RO_0004048 obo:IAO_0000115 "Used to annotate object properties representing a causal relationship where the value indicates a direction. Should be \"+\", \"-\" or \"0\"" . obo:RO_0007001 obo:IAO_0000115 "A relation between an entity and a disease of a host, in which the entity is not part of the host itself, and the condition results in pathological processes." . obo:RO_0008501 obo:IAO_0000115 "An interaction relationship wherein a plant or algae is living on the outside surface of another plant." ; obo:IAO_0000119 "https://en.wikipedia.org/wiki/Epiphyte" . obo:RO_0008502 obo:IAO_0000115 "inverse of epiphyte of" . obo:RO_0008503 obo:IAO_0000115 "A sub-relation of parasite of in which a parasite steals resources from another organism, usually food or nest material" ; obo:IAO_0000119 "https://en.wikipedia.org/wiki/Kleptoparasitism" . obo:RO_0008504 obo:IAO_0000115 "inverse of kleptoparasite of" . obo:RO_0008505 obo:IAO_0000115 "An interaction relationship wherein one organism creates a structure or environment that is lived in by another organism." . obo:RO_0008506 obo:IAO_0000115 "An interaction relationship describing organisms that often occur together at the same time and space or in the same environment." . obo:RO_0008507 obo:IAO_0000115 "An interaction relationship in which organism a lays eggs on the outside surface of organism b. Organism b is neither helped nor harmed in the process of egg laying or incubation." . obo:RO_0008508 obo:IAO_0000115 "inverse of lays eggs on" . obo:RO_0008509 obo:IAO_0000112 "Flying foxes (Pteropus giganteus) has_roost banyan tree (Ficus benghalensis)" ; obo:IAO_0000115 "x 'has roost' y if and only if: x is an organism, y is a habitat, and y can support rest behaviors x." . obo:RO_0009001 obo:IAO_0000112 "muffin 'has substance added' some 'baking soda'"@en ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "\"has substance added\" is a relation existing between a (physical) entity and a substance in which the entity has had the substance added to it at some point in time."@en ; obo:IAO_0000116 "The relation X 'has substance added' some Y doesn't imply that X still has Y in any detectable fashion subsequent to the addition. Water in dehydrated food or ice cubes are examples, as is food that undergoes chemical transformation. This definition should encompass recipe ingredients."@en ; obo:IAO_0000117 . obo:RO_0009002 obo:IAO_0000112 "'egg white' 'has substance removed' some 'egg yolk'"@en ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "\"has substance removed\" is a relation existing between two physical entities in which the first entity has had the second entity (a substance) removed from it at some point in time."@en ; obo:IAO_0000117 . obo:RO_0009003 obo:IAO_0000112 "sardines 'immersed in' some 'oil and mustard'"@en ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "\"immersed in\" is a relation between a (physical) entity and a fluid substance in which the entity is wholely or substantially surrounded by the substance."@en ; obo:IAO_0000117 . obo:RO_0009004 obo:IAO_0000112 "sardine has consumer some homo sapiens"@en ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "'has consumer' is a relation between a material entity and an organism in which the former can normally be digested or otherwise absorbed by the latter without immediate or persistent ill effect."@en ; obo:IAO_0000117 . obo:RO_0009005 obo:IAO_0000112 "bread 'has primary substance added' some 'flour'"@en ; obo:IAO_0000114 obo:IAO_0000428 ; obo:IAO_0000115 "'has primary substance added' indicates that an entity has had the given substance added to it in a proportion greater than any other added substance."@en ; obo:IAO_0000117 . obo:RO_0009006 obo:IAO_0000112 "A mass measurement assay measures an material's mass characteristic. A radioactivity detection assay measures the amount of radiation (alpha, beta or gamma ray emmissions) coming from a material."@en ; obo:IAO_0000115 "A relation between an assay and a characteristic, in which the assay generates a data item which is a measure of a characteristic."@en . obo:RO_0009007 obo:IAO_0000115 "Inverse of 'assay measures characteristic'"@en . obo:RO_0012000 obo:IAO_0000115 "a relation between a process and a continuant, in which the process is regulated by the small molecule continuant" . obo:RO_0012001 obo:IAO_0000115 "a relation between a process and a continuant, in which the process is activated by the small molecule continuant" . obo:RO_0012002 obo:IAO_0000115 "a relation between a process and a continuant, in which the process is inhibited by the small molecule continuant" . obo:RO_0012003 obo:IAO_0000115 "p acts on population of c iff c' is a collection, has members of type c, and p has participant c" . obo:RO_0012004 obo:IAO_0000115 "a relation between a continuant and a process, in which the continuant is a small molecule that regulates the process" . obo:RO_0012005 obo:IAO_0000115 "a relation between a continuant and a process, in which the continuant is a small molecule that activates the process" . obo:RO_0012006 obo:IAO_0000115 "a relation between a continuant and a process, in which the continuant is a small molecule that inhibits the process" . obo:RO_0012007 obo:IAO_0000115 "The relationship that links anatomical entities with a process that results in the adhesion of two or more entities via the non-covalent interaction of molecules expressed in, located in, and/or adjacent to, those entities." . obo:RO_0013001 obo:IAO_0000115 "A relationship between a neuron and a region, where the neuron has a functionally relevant number of input and/or output synapses in that region." ; oboInOwl:hasExactSynonym "has synaptic input or output in" . obo:RO_0013002 obo:IAO_0000115 "A relationship between a neuron and a region, where the neuron has a functionally relevant number of input synapses in that region." . obo:RO_0013003 obo:IAO_0000115 "A relationship between a neuron and a region, where the neuron has a functionally relevant number of output synapses in that region." . obo:RO_0013004 obo:IAO_0000115 "A relationship between a neuron and a region, where the neuron has a functionally relevant number of input and/or output synapses distributed throughout that region (rather than confined to a subregion)." . obo:RO_0013005 obo:IAO_0000115 "A relationship between a neuron and a region, where the neuron has a functionally relevant number of input synapses distributed throughout that region (rather than confined to a subregion)." . obo:RO_0013006 obo:IAO_0000115 "A relationship between a neuron and a region, where the neuron has a functionally relevant number output synapses distributed throughout that region (rather than confined to a subregion)." . obo:RO_0013007 obo:IAO_0000115 "Relation between a sensory neuron and some structure in which it receives sensory input via a sensory dendrite." ; oboInOwl:hasExactSynonym "has sensory dendrite location" , "has sensory terminal in" , "has sensory terminal location" . obo:RO_0013008 obo:IAO_0000115 "A relationship between an anatomical structure (including cells) and a neuron that has a functionally relevant number of chemical synapses to it." . obo:RO_0013009 obo:IAO_0000115 "A relationship between a neuron and a cell that it has a functionally relevant number of chemical synapses to." . obo:RO_0014001 obo:IAO_0000115 "A relationship between a disease and an infectious agent where the material basis of the disease is an infection with some infectious agent." . obo:RO_0015001 obo:IAO_0000112 "transcriptomically defined cell type X equivalent to ‘cell’ and (has_exemplar_data value [transcriptomic profile data])" ; obo:IAO_0000115 "A relation between a material entity and some data in which the data is taken as exemplifying the material entity." ; obo:IAO_0000116 "C has_exemplar_data y iff x is an instance of C and y is data about x that is taken as exemplifying of C." ; obo:IAO_0000117 . obo:RO_0015002 obo:IAO_0000117 . obo:RO_0015003 obo:IAO_0000115 "A relation between a group and another group it is part of but does not fully constitute." ; obo:IAO_0000116 "X subcluster_of Y iff: X and Y are clusters/groups; X != Y; all members of X are also members of Y." ; obo:IAO_0000117 . obo:RO_0015004 obo:IAO_0000112 "'Lamp5-like Egln3_1 primary motor cortex GABAergic interneuron (Mus musculus)' subClass_of: has_characterizing_marker_set some 'NS forest marker set of Lamp5-like Egln3_1 MOp (Mouse).'; NS forest marker set of Lamp5-like Egln3_1 SubClass_of: ('has part' some 'Mouse Fbn2') and ('has part' some 'Mouse Chrna7') and ('has part' some 'Mouse Fam19a1')." , "transcriptomically defined cell type X subClass_of: (has_characterizing_marker_set some S1); S1 has_part some gene 1, S1 has_part some gene 2, S1 has_part some gene 3." ; obo:IAO_0000115 "A relation that applies between a cell type and a set of markers that can be used to uniquely identify that cell type." ; obo:IAO_0000116 "C has_characterizing_marker_set y iff: C is a cell type and y is a collection of genes or proteins whose expression is sufficient to distinguish cell type C from most or all other cell types." ; oboInOwl:hasExactSynonym "has marker gene combination" , "has marker signature set" . obo:RO_0015006 obo:IAO_0000115 "q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0015006 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." ; oboInOwl:hasDbXref "https://orcid.org/0000-0002-6601-2165" ] . obo:RO_0015007 obo:IAO_0000115 "q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0015007 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." ; oboInOwl:hasDbXref "https://orcid.org/0000-0002-6601-2165" ] . obo:RO_0015008 obo:IAO_0000115 "q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0015008 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." ; oboInOwl:hasDbXref "https://orcid.org/0000-0002-6601-2165" ] . obo:RO_0015009 obo:IAO_0000115 "q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0015009 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." ; oboInOwl:hasDbXref "https://orcid.org/0000-0002-6601-2165" ] . obo:RO_0015011 obo:IAO_0000115 "s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0015011 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2." ; oboInOwl:hasDbXref "https://orcid.org/0000-0002-6601-2165" ] . obo:RO_0015015 obo:IAO_0000112 "'Ly-76 high positive erythrocyte' equivalent to 'enucleate erythrocyte' and (has_high_plasma_membrane_amount some 'lymphocyte antigen 76 (mouse)')" ; obo:IAO_0000115 "A relation between a cell and molecule or complex such that every instance of the cell has a high number of instances of that molecule expressed on the cell surface." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0015015 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "A relation between a cell and molecule or complex such that every instance of the cell has a high number of instances of that molecule expressed on the cell surface." ; oboInOwl:hasDbXref "PMID:19243617" ] . obo:RO_0015016 obo:IAO_0000112 "'DN2b thymocyte' equivalent to 'DN2 thymocyte' and (has_low_plasma_membrane_amount some 'mast/stem cell growth factor receptor')" ; obo:IAO_0000115 "A relation between a cell and molecule or complex such that every instance of the cell has a low number of instances of that molecule expressed on the cell surface." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0015016 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "A relation between a cell and molecule or complex such that every instance of the cell has a low number of instances of that molecule expressed on the cell surface." ; oboInOwl:hasDbXref "PMID:19243617" ] . obo:RO_0016002 obo:IAO_0000115 "A relationship that holds between an organism and a disease. Here a disease is construed broadly as a disposition to undergo pathological processes that exists in an organism because of one or more disorders in that organism." . obo:RO_0016004 obo:IAO_0000115 "X has exposure medium Y if X is an exposure event (process), Y is a material entity, and the stimulus for X is transmitted or carried in Y." ; obo:IAO_0000119 "ExO:0000083" . obo:RO_0017001 obo:IAO_0000112 "A diagnostic testing device utilizes a specimen." ; obo:IAO_0000115 "X device utilizes material Y means X and Y are material entities, and X is capable of some process P that has input Y." ; oboInOwl:hasBroadSynonym "utilizes" . obo:RO_0017003 obo:IAO_0000115 "A relation between entities in which one increases or decreases as the other does the same."@en ; obo:IAO_0000118 "directly correlated with"@en . obo:RO_0017004 obo:IAO_0000115 "A relation between entities in which one increases as the other decreases."@en ; obo:IAO_0000118 "inversely correlated with"@en . obo:RO_0017005 obo:IAO_0000112 "anticoagulant-containing test tube contains measured amount 5 ml of blood specimen." ; obo:IAO_0000115 "A relation between a container and measurement datum that specifies the actual amount of material in the container." . obo:RO_0017006 obo:IAO_0000112 "anticoagulant-containing test tube has maximum capacity 10 ml." ; obo:IAO_0000115 "A relation that relates a container to a measurement datum that specifies the maximum capacity of the container. Capacity can refer to either weight or volume." . obo:RO_0018001 obo:IAO_0000115 "Helper relation for OWL definition of RO:0018002 myristoylates" . obo:RO_0018002 obo:IAO_0000115 "A molecularly-interacts-with relationship between two entities, where the subject catalyzes a myristoylation activity that takes the object as input" . obo:RO_0018003 obo:IAO_0000115 "inverse of myristoylates" . obo:RO_0018031 obo:IAO_0000112 "pyruvate anion (CHEBI:15361) is the conjugate base of the neutral pyruvic acid (CHEBI:32816)" ; obo:IAO_0000115 "A is a direct conjugate base of B if and only if A is chemical entity that is a Brønsted–Lowry Base (i.e., can receive a proton) and by receiving a particular proton transforms it into B." . obo:RO_0018032 obo:IAO_0000112 "neutral pyruvic acid (CHEBI:32816) is the conjugate acid of the pyruvate anion (CHEBI:15361)" ; obo:IAO_0000115 "A is a direct conjugate acid of B if and only if A is chemical entity that is a Brønsted–Lowry Acid (i.e., can give up a proton) and by removing a particular proton transforms it into B." . obo:RO_0018033 obo:IAO_0000112 "(E)-cinnamoyl-CoA(4-) (CHEBI:57252) is a deprotonated form (E)-cinnamoyl-CoA (CHEBI:10956), which involves removing four protons." ; obo:IAO_0000115 """A is a deprotonated form of B if and only if A is chemical entity that is a Brønsted–Lowry Base (i.e., can receive a proton) and by adding some nonzero number of protons transforms it into B. This is a transitive relationship and follows this design pattern: https://oborel.github.io/obo-relations/direct-and-indirect-relations.""" . obo:RO_0018034 obo:IAO_0000112 "(E)-cinnamoyl-CoA (CHEBI:10956) is a protonated form of (E)-cinnamoyl-CoA(4-) (CHEBI:57252), which involves adding four protons." ; obo:IAO_0000115 """A is a protonated form of B if and only if A is chemical entity that is a Brønsted–Lowry Acid (i.e., can give up a proton) and by removing some nonzero number of protons transforms it into B. This is a transitive relationship and follows this design pattern: https://oborel.github.io/obo-relations/direct-and-indirect-relations.""" . obo:RO_0018035 obo:IAO_0000112 "phenol (CHEBI:15882) and aniline (CHEBI:17296) are matched molecular pairs because they differ by one chemical transformation i.e., the replacement of aryl primary amine with aryl primary alcohol." ; obo:IAO_0000115 """A and B are a matched small molecular pair (MMP) if their chemical structures define by a single, relatively small, well-defined structural modification. While this is normally called \"matched molecular pair\" in the cheminformatics literaturel, it is labeled as \"matched small molecular pair\" so as to reduce confusion with peptides and other macromolecules, which are also referenced as \"molecules\" in some contexts. This relationship is symmetric, meaning if A is a MMP with B iff B is a MMP with A. This relationship is not transitive, meaning that A is a MMP with B and B is a MMP with C, then A is not necessarily an MMP with C.""" ; oboInOwl:hasExactSynonym "is MMP with" , "is matched molecular pair with" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0018035 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget """A and B are a matched small molecular pair (MMP) if their chemical structures define by a single, relatively small, well-defined structural modification. While this is normally called \"matched molecular pair\" in the cheminformatics literaturel, it is labeled as \"matched small molecular pair\" so as to reduce confusion with peptides and other macromolecules, which are also referenced as \"molecules\" in some contexts. This relationship is symmetric, meaning if A is a MMP with B iff B is a MMP with A. This relationship is not transitive, meaning that A is a MMP with B and B is a MMP with C, then A is not necessarily an MMP with C.""" ; terms:source , , ] . obo:RO_0018036 obo:IAO_0000112 "3-carboxy-3-mercaptopropanoate (CHEBI:38707) is tautomer of 1,2-dicarboxyethanethiolate (CHEBI:38709) because 3-carboxy-3-mercaptopropanoate is deprotonated on the carboxylic acid whereas 1,2-dicarboxyethanethiolate is deprotonated on the secondary thiol." ; obo:IAO_0000115 """Two chemicals are tautomers if they can be readily interconverted. This commonly refers to prototropy in which a hydrogen's position is changed, such as between ketones and enols. This is also often observed in heterocyclic rings, e.g., ones containing nitrogens and/or have aryl functional groups containing heteroatoms.""" ; oboInOwl:hasExactSynonym "is desmotrope of" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0018036 ; owl:annotatedProperty obo:IAO_0000112 ; owl:annotatedTarget "3-carboxy-3-mercaptopropanoate (CHEBI:38707) is tautomer of 1,2-dicarboxyethanethiolate (CHEBI:38709) because 3-carboxy-3-mercaptopropanoate is deprotonated on the carboxylic acid whereas 1,2-dicarboxyethanethiolate is deprotonated on the secondary thiol." ; rdfs:seeAlso obo:CHEBI_38707 , obo:CHEBI_38709 ] . obo:RO_0018037 obo:IAO_0000112 "carboxylatoacetyl group (CHEBI:58957) is substituent group from malonate(1-) (CHEBI:30795)" ; obo:IAO_0000115 "Group A is a substituent group from Chemical B if A represents the functional part of A and includes information about where it is connected. A is not itself a chemical with a fully formed chemical graph, but is rather a partial graph with one or more connection points that can be used to attach to another chemical graph, typically as a functionalization." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0018037 ; owl:annotatedProperty obo:IAO_0000112 ; owl:annotatedTarget "carboxylatoacetyl group (CHEBI:58957) is substituent group from malonate(1-) (CHEBI:30795)" ; rdfs:seeAlso obo:CHEBI_30795 , obo:CHEBI_58957 ] . obo:RO_0018038 obo:IAO_0000112 "hydrocortamate hydrochloride (CHEBI:50854) has parent hydride hydrocortamate (CHEBI:50851)" ; obo:IAO_0000115 """Chemical A has functional parent Chemical B if there is chemical transformation through which chemical B can be produced from chemical A. For example, the relationship between a salt and a freebased compound is a \"has functional parent\" relationship.""" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0018038 ; owl:annotatedProperty obo:IAO_0000112 ; owl:annotatedTarget "hydrocortamate hydrochloride (CHEBI:50854) has parent hydride hydrocortamate (CHEBI:50851)" ; rdfs:seeAlso obo:CHEBI_50851 , obo:CHEBI_50854 ] . obo:RO_0018039 obo:IAO_0000112 "dexmedetomidine hydrochloride (CHEBI:31472) is enantiomer of levomedetomidine hydrochloride (CHEBI:48557) because the stereochemistry of the central chiral carbon is swapped." ; obo:IAO_0000115 """Chemicals A and B are enantiomers if they share the same molecular graph except the change of the configuration of substituents around exactly one chiral center. A chemical with no chiral centers can not have an enantiomer. A chemical with multiple chiral centers can have multiple enantiomers, but its enantiomers are not themselves enantiomers (they are diastereomers).""" ; oboInOwl:hasExactSynonym "is optical isomer of" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0018039 ; owl:annotatedProperty obo:IAO_0000112 ; owl:annotatedTarget "dexmedetomidine hydrochloride (CHEBI:31472) is enantiomer of levomedetomidine hydrochloride (CHEBI:48557) because the stereochemistry of the central chiral carbon is swapped." ; rdfs:comment obo:CHEBI_48557 ; rdfs:seeAlso obo:CHEBI_31472 ] . obo:RO_0018040 obo:IAO_0000112 "pyranine (CHEBI:52083) has parent hydride pyrene (CHEBI:39106). Pyrene is molecule with four fused benzene rings, whereas pyranine has the same core ring structure with additional sulfates." ; obo:IAO_0000115 "Chemical A has parent hydride Chemical B if there exists a molecular graphical transformation where functional groups on A are replaced with hydrogens in order to yield B." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_0018040 ; owl:annotatedProperty obo:IAO_0000112 ; owl:annotatedTarget "pyranine (CHEBI:52083) has parent hydride pyrene (CHEBI:39106). Pyrene is molecule with four fused benzene rings, whereas pyranine has the same core ring structure with additional sulfates." ; rdfs:seeAlso obo:CHEBI_39106 , obo:CHEBI_52083 ] . obo:RO_0019501 obo:IAO_0000115 "Relates a gene to condition, such that a variation in this gene predisposes to the development of a condition." . obo:RO_0020101 obo:IAO_0000112 "brachial artery vessel supplies blood to brachialis muscle" ; obo:IAO_0000115 "x vessel supplies blood to y if and only if x is a vessel that supplies blood directly or indirectly to an anatomical structure y." . obo:RO_0020102 obo:IAO_0000112 "cystic vein vessel drains blood from gallbladder" ; obo:IAO_0000115 "x vessel drains blood from y if and only if x is a vessel that drains blood directly or indirectly from an anatomical structure y." . obo:RO_0020103 obo:IAO_0000112 "alveolar capillary directly supplies and drains some alveolus" ; obo:IAO_0000115 "x directly supplies and drains y if and only if x is a capillary, y is an anatomical entity, and x directly supplies and drains y." . obo:RO_0020202 obo:IAO_0000115 "A relationship between a ratio or proportion and its dividend." ; oboInOwl:hasExactSynonym "has dividend" . obo:RO_0020203 obo:IAO_0000115 "A relationship between a ratio or proportion and its divisor." ; oboInOwl:hasExactSynonym "has divisor" . obo:RO_0040035 obo:IAO_0000115 "This relation groups relations between diseases and any other kind of entity." . obo:RO_0040036 obo:IAO_0000115 "p has anatomical participant c iff p has participant c, and c is an anatomical entity" . obo:RO_0040042 obo:IAO_0000112 "part-of is homeomorphic for independent continuants." ; obo:IAO_0000115 "R is homemorphic for C iff (1) there exists some x,y such that x R y, and x and y instantiate C and (2) for all x, if x is an instance of C, and there exists some y some such that x R y, then it follows that y is an instance of C." . obo:RO_HOM0000000 obo:IAO_0000115 "Relation between biological objects that resemble or are related to each other sufficiently to warrant a comparison." ; obo:IAO_0000116 "TODO: Add homeomorphy axiom" ; oboInOwl:hasExactSynonym "sameness" , "similar to" ; oboInOwl:hasRelatedSynonym "correspondence" , "resemblance" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000000 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Relation between biological objects that resemble or are related to each other sufficiently to warrant a comparison." ; oboInOwl:hasDbXref obo:HOM_0000000 , "BGEE:curator" ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000000 ; owl:annotatedProperty oboInOwl:hasRelatedSynonym ; owl:annotatedTarget "correspondence" ; oboInOwl:hasDbXref ] . obo:RO_HOM0000001 obo:IAO_0000115 "Similarity that results from common evolutionary origin." ; oboInOwl:hasExactSynonym "homologous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000001 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Similarity that results from common evolutionary origin." ; oboInOwl:hasDbXref , , , obo:HOM_0000001 ] . obo:RO_HOM0000002 obo:IAO_0000115 "Similarity that results from independent evolution." ; oboInOwl:hasExactSynonym "homoplasous to" ; oboInOwl:hasRelatedSynonym "analogy" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000002 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Similarity that results from independent evolution." ; oboInOwl:hasDbXref , obo:HOM_0000002 ] . obo:RO_HOM0000003 obo:IAO_0000115 "Similarity that is characterized by the organization of anatomical structures through the expression of homologous or identical patterning genes." ; oboInOwl:hasExactSynonym "homocracous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000003 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Similarity that is characterized by the organization of anatomical structures through the expression of homologous or identical patterning genes." ; oboInOwl:hasDbXref , , , obo:HOM_0000003 ] . obo:RO_HOM0000004 obo:IAO_0000115 "Homoplasy that involves different underlying mechanisms or structures." ; oboInOwl:hasRelatedSynonym "analogy" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000004 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Homoplasy that involves different underlying mechanisms or structures." ; oboInOwl:hasDbXref , obo:HOM_0000004 ] . obo:RO_HOM0000005 obo:IAO_0000115 "Homoplasy that involves homologous underlying mechanisms or structures." ; oboInOwl:hasExactSynonym "parallel evolution" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000005 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Homoplasy that involves homologous underlying mechanisms or structures." ; oboInOwl:hasDbXref , obo:HOM_0000005 ] . obo:RO_HOM0000006 obo:IAO_0000115 "Homology that is defined by similarity with regard to selected structural parameters." ; oboInOwl:hasExactSynonym "structural homologous to" ; oboInOwl:hasRelatedSynonym "idealistic homology" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000006 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Homology that is defined by similarity with regard to selected structural parameters." ; oboInOwl:hasDbXref , , obo:HOM_0000006 , "ISBN:0123195837" ] . obo:RO_HOM0000007 obo:IAO_0000115 "Homology that is defined by common descent." ; oboInOwl:hasBroadSynonym "homology" ; oboInOwl:hasExactSynonym "cladistic homology" , "historical homologous to" , "phylogenetic homology" , "taxic homology" ; oboInOwl:hasRelatedSynonym "true homology" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000007 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Homology that is defined by common descent." ; oboInOwl:hasDbXref , obo:HOM_0000007 , "ISBN:0123195837" ] . obo:RO_HOM0000008 obo:IAO_0000115 "Homology that is defined by sharing of a set of developmental constraints, caused by locally acting self-regulatory mechanisms of differentiation, between individualized parts of the phenotype." ; oboInOwl:hasExactSynonym "biological homologous to" ; oboInOwl:hasRelatedSynonym "transformational homology" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000008 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Homology that is defined by sharing of a set of developmental constraints, caused by locally acting self-regulatory mechanisms of differentiation, between individualized parts of the phenotype." ; oboInOwl:hasDbXref , , obo:HOM_0000008 ] . obo:RO_HOM0000009 obo:IAO_0000115 "Homoplasy that involves phenotypes similar to those seen in ancestors within the lineage." ; oboInOwl:hasExactSynonym "atavism" , "rudiment" ; oboInOwl:hasRelatedSynonym "reversion" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000009 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Homoplasy that involves phenotypes similar to those seen in ancestors within the lineage." ; oboInOwl:hasDbXref , obo:HOM_0000009 ] . obo:RO_HOM0000010 obo:IAO_0000115 "Structural homology that is detected by similarity in content and organization between chromosomes." ; oboInOwl:hasExactSynonym "syntenic homologous to" ; oboInOwl:hasRelatedSynonym "synteny" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000010 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Structural homology that is detected by similarity in content and organization between chromosomes." ; oboInOwl:hasDbXref obo:HOM_0000010 , "MeSH:Synteny" ] . obo:RO_HOM0000011 obo:IAO_0000115 "Historical homology that involves genes that diverged after a duplication event." ; oboInOwl:hasExactSynonym "paralogous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000011 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Historical homology that involves genes that diverged after a duplication event." ; oboInOwl:hasDbXref , , obo:HOM_0000011 , ] . obo:RO_HOM0000012 obo:IAO_0000115 "Paralogy that involves sets of syntenic blocks." ; oboInOwl:hasExactSynonym "syntenic paralogous to" ; oboInOwl:hasRelatedSynonym "duplicon" , "paralogon" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000012 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Paralogy that involves sets of syntenic blocks." ; oboInOwl:hasDbXref , obo:HOM_0000012 , "DOI:10.1002/1097-010X(20001215)288:4<345::AID-JEZ7>3.0.CO;2-Y" ] . obo:RO_HOM0000013 obo:IAO_0000115 "Syntenic homology that involves chromosomes of different species." ; oboInOwl:hasExactSynonym "syntenic orthologous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000013 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Syntenic homology that involves chromosomes of different species." ; oboInOwl:hasDbXref , obo:HOM_0000013 ] . obo:RO_HOM0000014 obo:IAO_0000115 "Structural homology that involves complex structures from which only a fraction of the elements that can be isolated are separately homologous." ; oboInOwl:hasExactSynonym "fractional homology" , "partial homologous to" , "segmental homology" ; oboInOwl:hasRelatedSynonym "mixed homology" , "modular homology" , "partial correspondence" , "percent homology" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000014 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Structural homology that involves complex structures from which only a fraction of the elements that can be isolated are separately homologous." ; oboInOwl:hasDbXref obo:HOM_0000014 , "ISBN:0123195837" , "ISBN:978-0471984931" ] . obo:RO_HOM0000015 obo:IAO_0000115 "Structural homology that is detected at the level of the 3D protein structure, but maybe not at the level of the amino acid sequence." ; oboInOwl:hasExactSynonym "protein structural homologous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000015 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Structural homology that is detected at the level of the 3D protein structure, but maybe not at the level of the amino acid sequence." ; oboInOwl:hasDbXref , obo:HOM_0000015 ] . obo:RO_HOM0000016 obo:IAO_0000115 "Structural homology that involves a pseudogenic feature and its functional ancestor." ; oboInOwl:hasBroadSynonym "pseudogene" ; oboInOwl:hasExactSynonym "non functional homologous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000016 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Structural homology that involves a pseudogenic feature and its functional ancestor." ; oboInOwl:hasDbXref obo:HOM_0000016 , "SO:non_functional_homolog_of" ] . obo:RO_HOM0000017 obo:IAO_0000115 "Historical homology that involves genes that diverged after a speciation event." ; oboInOwl:hasExactSynonym "orthologous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000017 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Historical homology that involves genes that diverged after a speciation event." ; oboInOwl:hasDbXref , , , obo:HOM_0000017 , ] . obo:RO_HOM0000018 obo:IAO_0000115 "Historical homology that is characterized by an interspecies (horizontal) transfer since the common ancestor." ; oboInOwl:hasExactSynonym "xenologous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000018 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Historical homology that is characterized by an interspecies (horizontal) transfer since the common ancestor." ; oboInOwl:hasDbXref , , obo:HOM_0000018 ] . obo:RO_HOM0000019 obo:IAO_0000115 "Historical homology that involves two members sharing no other homologs in the lineages considered." ; oboInOwl:hasExactSynonym "1 to 1 homologous to" , "1:1 homology" , "one-to-one homology" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000019 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Historical homology that involves two members sharing no other homologs in the lineages considered." ; oboInOwl:hasDbXref obo:HOM_0000019 , "BGEE:curator" ] . obo:RO_HOM0000020 obo:IAO_0000115 "Orthology that involves two genes that did not experience any duplication after the speciation event that created them." ; oboInOwl:hasExactSynonym "1 to 1 orthologous to" , "1:1 orthology" , "one-to-one orthology" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000020 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Orthology that involves two genes that did not experience any duplication after the speciation event that created them." ; oboInOwl:hasDbXref , obo:HOM_0000020 , ] . obo:RO_HOM0000022 obo:IAO_0000115 "Paralogy that results from a whole genome duplication event." ; oboInOwl:hasExactSynonym "ohnologous to" ; oboInOwl:hasRelatedSynonym "homoeology" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000022 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Paralogy that results from a whole genome duplication event." ; oboInOwl:hasDbXref , obo:HOM_0000022 ] . obo:RO_HOM0000023 obo:IAO_0000115 "Paralogy that results from a lineage-specific duplication subsequent to a given speciation event." ; oboInOwl:hasExactSynonym "in-paralogous to" , "inparalogy" , "symparalogy" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000023 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Paralogy that results from a lineage-specific duplication subsequent to a given speciation event." ; oboInOwl:hasDbXref , obo:HOM_0000023 ] . obo:RO_HOM0000024 obo:IAO_0000115 "Paralogy that results from a duplication preceding a given speciation event." ; oboInOwl:hasExactSynonym "alloparalogy" , "out-paralogous to" , "outparalogy" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000024 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Paralogy that results from a duplication preceding a given speciation event." ; oboInOwl:hasDbXref , obo:HOM_0000024 ] . obo:RO_HOM0000025 obo:IAO_0000115 "1:many orthology that involves a gene in species A and one of its ortholog in species B, when duplications more recent than the species split have occurred in species B but not in species A." ; oboInOwl:hasExactSynonym "pro-orthologous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000025 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "1:many orthology that involves a gene in species A and one of its ortholog in species B, when duplications more recent than the species split have occurred in species B but not in species A." ; oboInOwl:hasDbXref , , obo:HOM_0000025 ] . obo:RO_HOM0000026 obo:IAO_0000115 "1:many orthology that involves a gene in species A and its ortholog in species B, when duplications more recent than the species split have occurred in species A but not in species B." ; oboInOwl:hasExactSynonym "semi-orthologous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000026 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "1:many orthology that involves a gene in species A and its ortholog in species B, when duplications more recent than the species split have occurred in species A but not in species B." ; oboInOwl:hasDbXref , , obo:HOM_0000026 ] . obo:RO_HOM0000027 obo:IAO_0000115 "Iterative homology that involves structures arranged along the main body axis." ; oboInOwl:hasExactSynonym "serial homologous to" ; oboInOwl:hasRelatedSynonym "homonomy" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000027 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Iterative homology that involves structures arranged along the main body axis." ; oboInOwl:hasDbXref , obo:HOM_0000027 ] . obo:RO_HOM0000028 obo:IAO_0000115 "Biological homology that is characterized by changes, over evolutionary time, in the rate or timing of developmental events of homologous structures." ; oboInOwl:hasExactSynonym "heterochronous homologous to" , "heterochrony" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000028 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Biological homology that is characterized by changes, over evolutionary time, in the rate or timing of developmental events of homologous structures." ; oboInOwl:hasDbXref obo:HOM_0000028 , "ISBN:978-0674639416" ] . obo:RO_HOM0000029 obo:IAO_0000115 "Heterochronous homology that is produced by a retention in adults of a species of traits previously seen only in juveniles." ; oboInOwl:hasExactSynonym "juvenification" , "pedomorphosis" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000029 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Heterochronous homology that is produced by a retention in adults of a species of traits previously seen only in juveniles." ; oboInOwl:hasDbXref , obo:HOM_0000029 , "ISBN:978-0674639416" ] . obo:RO_HOM0000030 obo:IAO_0000115 "Heterochronous homology that is produced by a maturation of individuals of a species past adulthood, which take on hitherto unseen traits." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000030 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Heterochronous homology that is produced by a maturation of individuals of a species past adulthood, which take on hitherto unseen traits." ; oboInOwl:hasDbXref , obo:HOM_0000030 ] . obo:RO_HOM0000031 obo:IAO_0000115 "Paedomorphosis that is produced by precocious sexual maturation of an organism still in a morphologically juvenile stage." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000031 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Paedomorphosis that is produced by precocious sexual maturation of an organism still in a morphologically juvenile stage." ; oboInOwl:hasDbXref , obo:HOM_0000031 , "ISBN:978-0674639416" ] . obo:RO_HOM0000032 obo:IAO_0000115 "Paedomorphosis that is produced by a retardation of somatic development." ; oboInOwl:hasExactSynonym "juvenilization" , "neotenous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000032 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Paedomorphosis that is produced by a retardation of somatic development." ; oboInOwl:hasDbXref , obo:HOM_0000032 , "ISBN:978-0674639416" ] . obo:RO_HOM0000033 obo:IAO_0000115 "Convergence that results from co-evolution usually involving an evolutionary arms race." ; oboInOwl:hasExactSynonym "mimicrous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000033 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Convergence that results from co-evolution usually involving an evolutionary arms race." ; oboInOwl:hasDbXref , obo:HOM_0000033 ] . obo:RO_HOM0000034 obo:IAO_0000115 "Orthology that involves two genes when duplications more recent than the species split have occurred in one species but not the other." ; oboInOwl:hasExactSynonym "1 to many orthologous to" , "1:many orthology" , "one-to-many orthology" ; oboInOwl:hasRelatedSynonym "co-orthology" , "many to 1 orthology" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000034 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Orthology that involves two genes when duplications more recent than the species split have occurred in one species but not the other." ; oboInOwl:hasDbXref , obo:HOM_0000034 , ] . obo:RO_HOM0000036 obo:IAO_0000115 "Historical homology that involves two members of a larger set of homologs." ; oboInOwl:hasExactSynonym "many to many homologous to" , "many-to-many homology" , "many:many homology " . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000036 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Historical homology that involves two members of a larger set of homologs." ; oboInOwl:hasDbXref , obo:HOM_0000036 ] . obo:RO_HOM0000037 obo:IAO_0000115 "Historical homology that involves a structure that has no other homologs in the species in which it is defined, and several homologous structures in another species." ; oboInOwl:hasExactSynonym "1 to many homologous to" , "one-to-many homology" ; oboInOwl:hasRelatedSynonym "1:many homology" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000037 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Historical homology that involves a structure that has no other homologs in the species in which it is defined, and several homologous structures in another species." ; oboInOwl:hasDbXref obo:HOM_0000037 , "BGEE:curator" ] . obo:RO_HOM0000042 obo:IAO_0000115 "Historical homology that is based on recent shared ancestry, characterizing a monophyletic group." ; oboInOwl:hasExactSynonym "apomorphous to" ; oboInOwl:hasRelatedSynonym "synapomorphy" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000042 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Historical homology that is based on recent shared ancestry, characterizing a monophyletic group." ; oboInOwl:hasDbXref obo:HOM_0000042 , "ISBN:978-0252068140" ] . obo:RO_HOM0000043 obo:IAO_0000115 "Historical homology that is based on distant shared ancestry." ; oboInOwl:hasExactSynonym "plesiomorphous to" ; oboInOwl:hasRelatedSynonym "symplesiomorphy" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000043 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Historical homology that is based on distant shared ancestry." ; oboInOwl:hasDbXref obo:HOM_0000043 , "ISBN:978-0252068140" ] . obo:RO_HOM0000044 obo:IAO_0000115 "Homocracy that involves morphologically and phylogenetically disparate structures that are the result of parallel evolution." ; oboInOwl:hasExactSynonym "deep genetic homology" , "deep homologous to" ; oboInOwl:hasRelatedSynonym "generative homology" , "homoiology" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000044 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Homocracy that involves morphologically and phylogenetically disparate structures that are the result of parallel evolution." ; oboInOwl:hasDbXref , , obo:HOM_0000044 ] . obo:RO_HOM0000045 obo:IAO_0000115 "Historical homology that is characterized by topological discordance between a gene tree and a species tree attributable to the phylogenetic sorting of genetic polymorphisms across successive nodes in a species tree." ; oboInOwl:hasExactSynonym "hemiplasous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000045 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Historical homology that is characterized by topological discordance between a gene tree and a species tree attributable to the phylogenetic sorting of genetic polymorphisms across successive nodes in a species tree." ; oboInOwl:hasDbXref , obo:HOM_0000045 ] . obo:RO_HOM0000046 obo:IAO_0000115 "Historical homology that involves not recombining and subsequently differentiated sex chromosomes." ; oboInOwl:hasExactSynonym "gametologous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000046 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Historical homology that involves not recombining and subsequently differentiated sex chromosomes." ; oboInOwl:hasDbXref obo:HOM_0000046 , ] . obo:RO_HOM0000047 obo:IAO_0000115 "Historical homology that involves the chromosomes able to pair (synapse) during meiosis." ; oboInOwl:hasExactSynonym "chromosomal homologous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000047 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Historical homology that involves the chromosomes able to pair (synapse) during meiosis." ; oboInOwl:hasDbXref obo:HOM_0000047 , "ISBN:0195307615" ] . obo:RO_HOM0000048 obo:IAO_0000115 "Orthology that involves two genes that experienced duplications more recent than the species split that created them." ; oboInOwl:hasExactSynonym "many to many orthologous to" , "many-to-many orthology" , "many:many orthology" , "trans-orthology" ; oboInOwl:hasRelatedSynonym "co-orthology" , "trans-homology" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000048 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Orthology that involves two genes that experienced duplications more recent than the species split that created them." ; oboInOwl:hasDbXref , obo:HOM_0000048 , ] . obo:RO_HOM0000049 obo:IAO_0000115 "Paralogy that involves genes from the same species." ; oboInOwl:hasExactSynonym "within-species paralogous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000049 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Paralogy that involves genes from the same species." ; oboInOwl:hasDbXref obo:HOM_0000049 , ] . obo:RO_HOM0000050 obo:IAO_0000115 "Paralogy that involves genes from different species." ; oboInOwl:hasExactSynonym "between-species paralogous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000050 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Paralogy that involves genes from different species." ; oboInOwl:hasDbXref obo:HOM_0000050 , ] . obo:RO_HOM0000051 obo:IAO_0000115 "Paedomorphosis that is produced by delayed growth of immature structures into the adult form." ; oboInOwl:hasExactSynonym "post-displacement" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000051 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Paedomorphosis that is produced by delayed growth of immature structures into the adult form." ; oboInOwl:hasDbXref , obo:HOM_0000051 ] . obo:RO_HOM0000052 obo:IAO_0000115 "Peramorphosis that is produced by a delay in the offset of development." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000052 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Peramorphosis that is produced by a delay in the offset of development." ; oboInOwl:hasDbXref , obo:HOM_0000052 , "ISBN:978-0674639416" ] . obo:RO_HOM0000053 obo:IAO_0000115 "Xenology that results, not from the transfer of a gene between two species, but from a hybridization of two species." ; oboInOwl:hasExactSynonym "synologous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000053 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Xenology that results, not from the transfer of a gene between two species, but from a hybridization of two species." ; oboInOwl:hasDbXref , , obo:HOM_0000053 ] . obo:RO_HOM0000054 obo:IAO_0000115 "Orthology that involves functional equivalent genes with retention of the ancestral function." ; oboInOwl:hasExactSynonym "isoorthologous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000054 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Orthology that involves functional equivalent genes with retention of the ancestral function." ; oboInOwl:hasDbXref , obo:HOM_0000054 ] . obo:RO_HOM0000055 obo:IAO_0000115 "Paralogy that is characterized by duplication of adjacent sequences on a chromosome segment." ; oboInOwl:hasExactSynonym "tandem paralogous to" ; oboInOwl:hasRelatedSynonym "iterative paralogy" , "serial paralogy" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000055 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Paralogy that is characterized by duplication of adjacent sequences on a chromosome segment." ; oboInOwl:hasDbXref , obo:HOM_0000055 , "ISBN:978-0878932665" ] . obo:RO_HOM0000057 obo:IAO_0000115 "Parallelism that involves morphologically very similar structures, occurring only within some members of a taxon and absent in the common ancestor (which possessed the developmental basis to develop this character)." ; oboInOwl:hasExactSynonym "apomorphic tendency" , "cryptic homology" , "latent homologous to" , "underlying synapomorphy" ; oboInOwl:hasRelatedSynonym "homoiology" , "homoplastic tendency" , "re-awakening" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000057 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Parallelism that involves morphologically very similar structures, occurring only within some members of a taxon and absent in the common ancestor (which possessed the developmental basis to develop this character)." ; oboInOwl:hasDbXref , , , obo:HOM_0000057 , "ISBN:0199141118" ] . obo:RO_HOM0000058 obo:IAO_0000115 "Homocracy that involves recognizably corresponding characters that occurs in two or more taxa, or as a repeated unit within an individual." ; oboInOwl:hasExactSynonym "generative homology" , "syngenous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000058 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Homocracy that involves recognizably corresponding characters that occurs in two or more taxa, or as a repeated unit within an individual." ; oboInOwl:hasDbXref , obo:HOM_0000058 , "DOI:10.1002/1521-1878(200009)22:9<846::AID-BIES10>3.0.CO;2-R" ] . obo:RO_HOM0000060 obo:IAO_0000115 "Between-species paralogy that involves single copy paralogs resulting from reciprocal gene loss." ; oboInOwl:hasExactSynonym "1:1 paralogy" , "apparent 1:1 orthology" , "apparent orthologous to" , "pseudoorthology" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000060 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Between-species paralogy that involves single copy paralogs resulting from reciprocal gene loss." ; oboInOwl:hasDbXref , obo:HOM_0000060 , ] . obo:RO_HOM0000061 obo:IAO_0000115 "Xenology that involves genes that ended up in a given genome as a result of a combination of vertical inheritance and horizontal gene transfer." ; oboInOwl:hasExactSynonym "pseudoparalogous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000061 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Xenology that involves genes that ended up in a given genome as a result of a combination of vertical inheritance and horizontal gene transfer." ; oboInOwl:hasDbXref , obo:HOM_0000061 ] . obo:RO_HOM0000062 obo:IAO_0000115 "Historical homology that involves functional equivalent genes with retention of the ancestral function." ; oboInOwl:hasExactSynonym "equivalogous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000062 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Historical homology that involves functional equivalent genes with retention of the ancestral function." ; oboInOwl:hasDbXref , obo:HOM_0000062 ] . obo:RO_HOM0000063 obo:IAO_0000115 "Historical homology that involves orthologous pairs of interacting molecules in different organisms." ; oboInOwl:hasExactSynonym "interologous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000063 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Historical homology that involves orthologous pairs of interacting molecules in different organisms." ; oboInOwl:hasDbXref , , obo:HOM_0000063 ] . obo:RO_HOM0000065 obo:IAO_0000115 "Similarity that is characterized by interchangeability in function." ; oboInOwl:hasRelatedSynonym "functional similarity" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000065 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Similarity that is characterized by interchangeability in function." ; oboInOwl:hasDbXref , , obo:HOM_0000065 ] . obo:RO_HOM0000066 obo:IAO_0000115 "Biological homology that involves parts of the same organism." ; oboInOwl:hasExactSynonym "iterative homologous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000066 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Biological homology that involves parts of the same organism." ; oboInOwl:hasDbXref , obo:HOM_0000066 ] . obo:RO_HOM0000068 obo:IAO_0000115 "Xenology that is characterized by multiple horizontal transfer events, resulting in the presence of two or more copies of the foreign gene in the host genome." ; oboInOwl:hasExactSynonym "duplicate xenology" , "multiple xenology" , "paraxenologous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000068 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Xenology that is characterized by multiple horizontal transfer events, resulting in the presence of two or more copies of the foreign gene in the host genome." ; oboInOwl:hasDbXref obo:HOM_0000068 , ] . obo:RO_HOM0000069 obo:IAO_0000115 "Paralogy that is characterized by extra similarity between paralogous sequences resulting from concerted evolution." ; oboInOwl:hasExactSynonym "plerologous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000069 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Paralogy that is characterized by extra similarity between paralogous sequences resulting from concerted evolution." ; oboInOwl:hasDbXref obo:HOM_0000069 , ] . obo:RO_HOM0000071 obo:IAO_0000115 "Structural homology that involves structures with the same or similar relative positions." ; oboInOwl:hasExactSynonym "homotopous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000071 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Structural homology that involves structures with the same or similar relative positions." ; oboInOwl:hasDbXref , , obo:HOM_0000071 , "ISBN:0123195837" ] . obo:RO_HOM0000072 obo:IAO_0000115 "Biological homology that involves an ectopic structure and the normally positioned structure." ; oboInOwl:hasRelatedSynonym "heterotopy" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000072 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Biological homology that involves an ectopic structure and the normally positioned structure." ; oboInOwl:hasDbXref , , obo:HOM_0000072 ] . obo:RO_HOM0000073 obo:IAO_0000115 "Synology that results from allopolyploidy." ; oboInOwl:hasExactSynonym "homoeologous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000073 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Synology that results from allopolyploidy." ; oboInOwl:hasDbXref , obo:HOM_0000073 ] . obo:RO_HOM0000074 obo:IAO_0000115 "Iterative homology that involves two structures, one of which originated as a duplicate of the other and co-opted the expression of patterning genes of the ancestral structure." ; oboInOwl:hasRelatedSynonym "axis paramorphism" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000074 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Iterative homology that involves two structures, one of which originated as a duplicate of the other and co-opted the expression of patterning genes of the ancestral structure." ; oboInOwl:hasDbXref , , obo:HOM_0000074 ] . obo:RO_HOM0000075 obo:IAO_0000115 "Historical homology that involves orthologous pairs of transcription factors and downstream regulated genes in different organisms." ; oboInOwl:hasExactSynonym "regulogous to" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:RO_HOM0000075 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Historical homology that involves orthologous pairs of transcription factors and downstream regulated genes in different organisms." ; oboInOwl:hasDbXref , obo:HOM_0000075 ] . obo:UBERON_0000122 obo:IAO_0000115 "A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses." ; oboInOwl:hasExactSynonym "funiculus" , "nerve fiber bundle" , "neural fiber bundle" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:UBERON_0000122 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses." ; oboInOwl:hasDbXref "CARO:0001001" , "FBC:DOS" , "FBbt:00005099" ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:UBERON_0000122 ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedTarget "nerve fiber bundle" ; oboInOwl:hasDbXref "FBbt:00005099" ] . obo:UBERON_0000466 obo:IAO_0000115 "Anatomical entity that has no mass." ; oboInOwl:hasExactSynonym "immaterial physical anatomical entity" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:UBERON_0000466 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Anatomical entity that has no mass." ; oboInOwl:hasDbXref "http://orcid.org/0000-0001-9114-8737" ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:UBERON_0000466 ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedTarget "immaterial physical anatomical entity" ; oboInOwl:hasDbXref "FMA:67112" ] . obo:UBERON_0001062 obo:IAO_0000115 "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." . [ rdf:type owl:Axiom ; owl:annotatedSource obo:UBERON_0001062 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." ; oboInOwl:hasDbXref "FMA:62955" , "http://orcid.org/0000-0001-9114-8737" ] . obo:UBERON_0001981 obo:IAO_0000115 "A vessel through which blood circulates in the body." ; obo:IAO_0000116 "consider adopting the EMAPA superclass 'vascular element', which includes microvasculature (e.g. capillaries), vascular plexus" ; oboInOwl:hasBroadSynonym "vascular element" ; oboInOwl:hasExactSynonym "region of vascular tree organ" , "vascular tree organ region" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:UBERON_0001981 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "A vessel through which blood circulates in the body." ; oboInOwl:hasDbXref "BTO:0001102" , "Wikipedia:Blood_vessel" ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:UBERON_0001981 ; owl:annotatedProperty oboInOwl:hasBroadSynonym ; owl:annotatedTarget "vascular element" ; oboInOwl:hasDbXref "EMAPA:35993" ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:UBERON_0001981 ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedTarget "region of vascular tree organ" ; oboInOwl:hasDbXref "FMA:50722" ] . [ rdf:type owl:Axiom ; owl:annotatedSource obo:UBERON_0001981 ; owl:annotatedProperty oboInOwl:hasExactSynonym ; owl:annotatedTarget "vascular tree organ region" ; oboInOwl:hasDbXref "FMA:50722" ] . obo:UBERON_0001982 obo:IAO_0000115 "Any of the smallest blood vessels connecting arterioles with venules." ; obo:IAO_0000116 "not all sources agree capillary is a blood vessel - consider adopting EMAPA superclass of vascular element" ; oboInOwl:hasExactSynonym "blood capillary" , "capillary vessel" . [ rdf:type owl:Axiom ; owl:annotatedSource obo:UBERON_0001982 ; owl:annotatedProperty obo:IAO_0000115 ; owl:annotatedTarget "Any of the smallest blood vessels connecting arterioles with venules." ; oboInOwl:hasDbXref "ISBN:0073040584" , "Wikipedia:Capillary" , "https://github.com/obophenotype/uberon/issues/137" ] . rdfs:label "BAO" , "BioAssay Ontology" , "bioassay ontology" . sco:SCO_0000003 rdfs:comment """SuMSO developer comment: See the comment under the corresponding \"indicator\" class."""@en . sco:SCO_0000005 rdfs:comment """SuMSO creator note: See the comment under the corresponding worth-role class labeled \"SuMSO creator comment\".""" . sco:SCO_0000019 rdfs:comment """SuMSO developer comment: Implementations will extend the representation, including proving insights into different types of value, such as economic and cultural ones."""@en , """SuMSO creator comment: To follow SCO comment to this class for distinguish and account for what is considered worthy of value with regrd to food and meat systems.""" . sco:SCO_0000035 rdfs:comment """SuMSO creator comment: Specific subclasses for food and meat system indicators may be created if needed. Corresponding indicator value subclasses may be equally created."""@en , """SuMSO creator comment: This class can be filled with indicator subclasses for food and meat systems.""" . ################################################################# # General axioms ################################################################# [ rdf:type owl:AllDisjointClasses ; owl:members ( obo:BFO_0000004 obo:BFO_0000020 obo:BFO_0000031 ) ] . [ rdf:type owl:AllDisjointClasses ; owl:members ( obo:BFO_0000006 obo:BFO_0000029 obo:BFO_0000140 ) ] . [ rdf:type owl:AllDisjointClasses ; owl:members ( obo:BFO_0000008 obo:BFO_0000011 obo:BFO_0000015 obo:BFO_0000035 ) ] . [ rdf:type owl:AllDisjointClasses ; owl:members ( obo:BFO_0000009 obo:BFO_0000018 obo:BFO_0000026 obo:BFO_0000028 ) ] . [ rdf:type owl:AllDisjointClasses ; owl:members ( obo:BFO_0000142 obo:BFO_0000146 obo:BFO_0000147 ) ] . ### Generated by the OWL API (version 4.5.29.2024-05-13T12:11:03Z) https://github.com/owlcs/owlapi