Workflow: etl_http_pdc.cwl
Fetched 2023-01-11 13:29:13 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| uuid | String | ||
| bam_url | String | ||
| bam_name | String | ||
| dbsnp_url | String | ||
| fasta_url | String | ||
| dbsnp_name | String | ||
| fasta_name | String | ||
| thread_count | Integer | ||
| fasta_bwa_url | String | ||
| fasta_bwa_name | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| transform |
transform.cwl
(Workflow)
|
||
| extract_curl_bam |
../../tools/curl_pdc.cwl
(CommandLineTool)
|
||
| root_fasta_files |
../../tools/root_fasta_dnaseq.cwl
(CommandLineTool)
|
||
| extract_curl_dbsnp |
../../tools/curl_pdc.cwl
(CommandLineTool)
|
||
| extract_curl_fasta |
../../tools/curl_pdc.cwl
(CommandLineTool)
|
||
| extract_untar_fasta |
../../tools/untar_fasta.cwl
(CommandLineTool)
|
||
| extract_curl_fastabwa |
../../tools/curl_pdc.cwl
(CommandLineTool)
|
||
| extract_untar_fastabwa |
../../tools/untar_fastabwa.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| sqlite | File | ||
| harmonized_bam | File |
Permalink:
https://w3id.org/cwl/view/git/23819c2a0dcd98b61487cbc82e602dd58cb4d342/workflows/dnaseq/etl_http_pdc.cwl
