Workflow: workflow.cwl

Fetched 2023-01-05 07:54:19 GMT
children parents
workflow cluster_inputs Workflow Inputs cluster_outputs Workflow Outputs in_genomic_gff in_genomic_gff gunzip_genomic_gff gunzip_genomic_gff in_genomic_gff->gunzip_genomic_gff in_gz check_md5checksums check_md5checksums in_genomic_gff->check_md5checksums in_gz extract_md5checksums extract_md5checksums in_genomic_gff->extract_md5checksums in_gz in_cds_fasta in_cds_fasta in_cds_fasta->check_md5checksums in_gz gunzip_cds_fasta gunzip_cds_fasta in_cds_fasta->gunzip_cds_fasta in_gz in_cds_fasta->extract_md5checksums in_gz in_md5checksums in_md5checksums in_md5checksums->extract_md5checksums in_txt in_transcript_fasta in_transcript_fasta in_transcript_fasta->check_md5checksums in_gz gunzip_transcript_fasta gunzip_transcript_fasta in_transcript_fasta->gunzip_transcript_fasta in_gz in_transcript_fasta->extract_md5checksums in_gz in_protein_fasta in_protein_fasta in_protein_fasta->check_md5checksums in_gz gunzip_protein_fasta gunzip_protein_fasta in_protein_fasta->gunzip_protein_fasta in_gz in_protein_fasta->extract_md5checksums in_gz in_genomic_fasta in_genomic_fasta in_genomic_fasta->check_md5checksums in_gz gunzip_genomic_fasta gunzip_genomic_fasta in_genomic_fasta->gunzip_genomic_fasta in_gz in_genomic_fasta->extract_md5checksums in_gz OUT_genomic_fasta OUT_genomic_fasta OUT_check OUT_check OUT_protein_fasta OUT_protein_fasta OUT_cds_fasta OUT_cds_fasta OUT_transcript_fasta OUT_transcript_fasta OUT_genomic_gff OUT_genomic_gff OUT_extract OUT_extract gunzip_genomic_gff->OUT_genomic_gff check_md5checksums->OUT_check check_md5checksums->gunzip_genomic_gff in_dummy check_md5checksums->gunzip_transcript_fasta in_dummy check_md5checksums->gunzip_cds_fasta in_dummy check_md5checksums->gunzip_genomic_fasta in_dummy check_md5checksums->gunzip_protein_fasta in_dummy gunzip_transcript_fasta->OUT_transcript_fasta gunzip_cds_fasta->OUT_cds_fasta gunzip_genomic_fasta->OUT_genomic_fasta gunzip_protein_fasta->OUT_protein_fasta extract_md5checksums->OUT_extract extract_md5checksums->check_md5checksums in_check
Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
in_cds_fasta File
in_genomic_gff File
in_md5checksums File
in_genomic_fasta File
in_protein_fasta File[]
in_transcript_fasta File

Steps

ID Runs Label Doc
gunzip_cds_fasta
gunzip_single.cwl (CommandLineTool)
check_md5checksums
check_md5checksums.cwl (CommandLineTool)
gunzip_genomic_gff
gunzip_single.cwl (CommandLineTool)
extract_md5checksums
extract_md5checksums.cwl (CommandLineTool)
gunzip_genomic_fasta
gunzip_single.cwl (CommandLineTool)
gunzip_protein_fasta
gunzip_multi.cwl (CommandLineTool)
gunzip_transcript_fasta
gunzip_single.cwl (CommandLineTool)

Outputs

ID Type Label Doc
OUT_check File
OUT_extract File
OUT_cds_fasta File
OUT_genomic_gff File
OUT_genomic_fasta File
OUT_protein_fasta File[]
OUT_transcript_fasta File
Permalink: https://w3id.org/cwl/view/git/243ba78438c6e9dfa3dfbfd6751124c978dd1c25/flow_md5checksums/workflow.cwl