Workflow: bam2vcf.cwl
Fetched 2023-01-11 05:28:39 GMT
Verified with cwltool version 3.1.20221201130942
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Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bam | File | ||
| threads | Integer | ||
| outprefix | String |
Any string that can distinguish sample. |
|
| reference | File |
FASTA file for reference genome |
|
| filter-expression | String |
VCF filter condition for GATK-VariantFiltration |
Steps
There are no steps in this workflow
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| hc_gvcf | File | ||
| varonly_vcf | File |
Permalink:
https://w3id.org/cwl/view/git/356c47bb87dbcd9a9cb565f147b0dad298dea6cb/workflows/bam2vcf.cwl
