Workflow: filter-pcr-artifacts.cwl
Fetched 2023-01-15 00:00:38 GMT
Verified with cwltool version 3.1.20221201130942
DNase-seq - map - Filter PCR Artifacts
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| input_bam_files | File[] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| window_trimmer |
windowtrimmer.cwl
(CommandLineTool)
|
Filter out reads from a BED file that are too concentrated within a base-pair window. |
|
| bedtools_bamtobed |
bedtools-bamtobed.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| filtered_bedfile | File[] |
Permalink:
https://w3id.org/cwl/view/git/4636f2c1a8bcfceeb4b3596ee29e9c06311ed4a1/v1.0/map/filter-pcr-artifacts.cwl
