Workflow: hi-c-processing-bam.cwl
Fetched 2023-01-12 11:58:31 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| chromsize | File | ||
| input_bams | File[] | ||
| nthreads_merge | Integer | ||
| nthreads_parse_sort | Integer |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| pairsam-merge |
pairsam-merge.cwl
(CommandLineTool)
|
||
| pairsam-filter |
pairsam-filter.cwl
(CommandLineTool)
|
||
| pairsam-markasdup |
pairsam-markasdup.cwl
(CommandLineTool)
|
||
| pairsam-parse-sort |
pairsam-parse-sort.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| annotated_bam | File | ||
| filtered_pairs | File |
Permalink:
https://w3id.org/cwl/view/git/46dbd4c38119ef8a2d00b44678e45dafd430f5fa/cwl_awsem_v1/hi-c-processing-bam.cwl
