Workflow: func_summaries.cwl

Fetched 2024-11-13 09:30:38 GMT
children parents
workflow cluster_inputs Workflow Inputs cluster_outputs Workflow Outputs ko_file ko_file functional_stats generate all functional stats and orf stats ko_file->functional_stats ko_file cds cds write_summaries gather summary file from InterProScan cds->write_summaries pfam_outname cds->write_summaries ips_outname cds->write_summaries antismash_outname cds->write_summaries ko_outname cds->functional_stats cds_file rna rna rna->functional_stats cmsearch_file pfam_annotation pfam_annotation pfam_annotation->functional_stats pfam antismash_gene_clusters antismash_gene_clusters antismash_gene_clusters->functional_stats antismash_file interproscan_annotation interproscan_annotation interproscan_annotation->functional_stats interproscan hmmscan_annotation hmmscan_annotation hmmscan_annotation->functional_stats hmmscan stats stats summary_ko summary_ko summary_pfam summary_pfam summary_antismash summary_antismash summary_ips summary_ips write_summaries->summary_ko write_summaries->summary_pfam write_summaries->summary_antismash write_summaries->summary_ips functional_stats->stats functional_stats->write_summaries pfam_entry_maps functional_stats->write_summaries antismash_entry_maps functional_stats->write_summaries ips_entry_maps functional_stats->write_summaries ko_entry_maps
Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
cds File
rna File
ko_file String
pfam_annotation File
hmmscan_annotation File
antismash_gene_clusters File (Optional)
interproscan_annotation File

Steps

ID Runs Label Doc
write_summaries
../../tools/summaries/write_summaries.cwl (CommandLineTool)
gather summary file from InterProScan
functional_stats
../../tools/summaries/functional_stats.cwl (CommandLineTool)
generate all functional stats and orf stats

Outputs

ID Type Label Doc
stats Directory
summary_ko File
summary_ips File
summary_pfam File
summary_antismash File (Optional)
html json turtle jsonld rdfxml svg png dot zip ro yaml raw
Permalink: https://w3id.org/cwl/view/git/4b98d8bf882bc96d924b5d2d4e6d9c188fa7b273/workflows/subworkflows/func_summaries.cwl