- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
GNU General Public License v3.0 only
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
fastq1 | File[] | ||
fastq2 | File[] | ||
fastq3 | File[] | ||
fastq4 | File[] | ||
threads | Integer | ||
metadata | File | ||
annotation | File | ||
salmon_index | Directory | ||
DESeq2_script | File | ||
subject_name1 | String | ||
subject_name2 | String | ||
subject_name3 | String | ||
subject_name4 | String | ||
salmon_count_script | File |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
DESeq2 |
../tools/DESeq2.cwl
(CommandLineTool)
|
||
salmon_count |
../tools/salmon_count.cwl
(CommandLineTool)
|
||
DESeq2_folder |
../tools/folder.cwl
(ExpressionTool)
|
||
salmon_quant_1 |
../tools/salmon_quant.cwl
(CommandLineTool)
|
||
salmon_quant_2 |
../tools/salmon_quant.cwl
(CommandLineTool)
|
||
salmon_quant_3 |
../tools/salmon_quant.cwl
(CommandLineTool)
|
||
salmon_quant_4 |
../tools/salmon_quant.cwl
(CommandLineTool)
|
||
salmon_count_folder |
../tools/folder.cwl
(ExpressionTool)
|
||
salmon_quant_folder |
../tools/folder.cwl
(ExpressionTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
DESeq2_out | Directory | ||
salmon_count_out | Directory | ||
salmon_quant_out | Directory |
Permalink:
https://w3id.org/cwl/view/git/54adf7fcfbf48c9cc4cfcf384e04eede39b5e5f6/workflows/salmon_DESeq2.cwl