Workflow: cmsearch-multimodel.cwl

Fetched 2023-01-12 01:43:14 GMT
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workflow cluster_inputs Workflow Inputs cluster_outputs Workflow Outputs clan_info clan_info remove_overlaps remove lower scoring overlaps from cmsearch --tblout files. clan_info->remove_overlaps clan_information query_sequences query_sequences cmsearch search sequence(s) against a covariance model database query_sequences->cmsearch query_sequences covariance_models covariance_models covariance_models->cmsearch covariance_model_database matches matches remove_overlaps->matches concatenate_matches concatenate_matches concatenate_matches->remove_overlaps cmsearch_matches cmsearch->concatenate_matches files default1 true default1->cmsearch omit_alignment_section default2 1000 default2->cmsearch search_space_size default3 true default3->cmsearch only_hmm
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Inputs

ID Type Title Doc
clan_info File
query_sequences File
covariance_models File[]

Steps

ID Runs Label Doc
cmsearch
../tools/infernal-cmsearch.cwl (CommandLineTool)
search sequence(s) against a covariance model database

http://eddylab.org/infernal/Userguide.pdf
remove_overlaps
../tools/cmsearch-deoverlap.cwl (CommandLineTool)
remove lower scoring overlaps from cmsearch --tblout files.

https://github.com/nawrockie/cmsearch_tblout_deoverlap/blob/master/00README.txt
concatenate_matches
../tools/concatenate.cwl (CommandLineTool)

Outputs

ID Type Label Doc
matches File
html json turtle jsonld rdfxml svg png dot zip ro yaml raw
Permalink: https://w3id.org/cwl/view/git/5dc7c5ca618a248a99bd4bf5f3042cdb21947193/workflows/cmsearch-multimodel.cwl