Workflow: BLAST against rRNA db

Fetched 2023-01-14 17:41:26 GMT
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workflow cluster_inputs Workflow Inputs cluster_outputs Workflow Outputs asn_cache asn_cache BLAST_against_nS_rRNA_db_blastn_wnode BLAST against rRNA db, execution asn_cache->BLAST_against_nS_rRNA_db_blastn_wnode asn_cache Generate_nS_rRNA_Annotation Generate rRNA Annotation asn_cache->Generate_nS_rRNA_Annotation asn_cache Merge_nS_rRNA_Alignments Merge rRNA Alignments asn_cache->Merge_nS_rRNA_Alignments asn_cache BLAST_against_nS_rRNA_db_gpx_qsubmit BLAST against rRNA db, scatter asn_cache->BLAST_against_nS_rRNA_db_gpx_qsubmit asn_cache product_name product_name product_name->Generate_nS_rRNA_Annotation product_name blastdb_dir blastdb_dir blastdb_dir->BLAST_against_nS_rRNA_db_blastn_wnode blastdb_dir blastdb_dir->Generate_nS_rRNA_Annotation blastdb_dir blastdb_dir->Merge_nS_rRNA_Alignments blastdb_dir blastdb_dir->BLAST_against_nS_rRNA_db_gpx_qsubmit blastdb_dir seqids seqids seqids->BLAST_against_nS_rRNA_db_gpx_qsubmit seqids blastdb blastdb blastdb->Generate_nS_rRNA_Annotation blastdb blastdb->Merge_nS_rRNA_Alignments blastdb blastdb->BLAST_against_nS_rRNA_db_gpx_qsubmit blastdb outname outname outname->Generate_nS_rRNA_Annotation annotation annotations annotations BLAST_against_nS_rRNA_db_gpx_make_outputs BLAST against rRNA db, gather BLAST_against_nS_rRNA_db_blastn_wnode->BLAST_against_nS_rRNA_db_gpx_make_outputs input_path Generate_nS_rRNA_Annotation->annotations Merge_nS_rRNA_Alignments->Generate_nS_rRNA_Annotation alignments BLAST_against_nS_rRNA_db_gpx_qsubmit->BLAST_against_nS_rRNA_db_blastn_wnode input_jobs BLAST_against_nS_rRNA_db_gpx_make_outputs->Merge_nS_rRNA_Alignments alignments
Workflow as SVG
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Inputs

ID Type Title Doc
seqids File
blastdb String
outname String
asn_cache Directory
blastdb_dir Directory
product_name String

Steps

ID Runs Label Doc
Merge_nS_rRNA_Alignments
align_merge.cwl (CommandLineTool)
Merge rRNA Alignments
Generate_nS_rRNA_Annotation
ribosomal_align2annot.cwl (CommandLineTool)
Generate rRNA Annotation
BLAST_against_nS_rRNA_db_gpx_qsubmit
gpx_qsubmit_blastn.cwl (CommandLineTool)
BLAST against rRNA db, scatter
BLAST_against_nS_rRNA_db_blastn_wnode
blastn_wnode.cwl (CommandLineTool)
BLAST against rRNA db, execution
BLAST_against_nS_rRNA_db_gpx_make_outputs
gpx_make_outputs.cwl (CommandLineTool)
BLAST against rRNA db, gather

Outputs

ID Type Label Doc
annotations File
Permalink: https://w3id.org/cwl/view/git/5ec226c941562124032ca6861bc8d1aeabf9d91a/bacterial_noncoding/wf_blastn.cwl