Workflow: Seed Protein Alignments I

Fetched 2023-01-14 18:27:37 GMT
children parents
workflow cluster_inputs Workflow Inputs cluster_outputs Workflow Outputs asn_cache asn_cache gpx_qsubmit Seed Protein Alignments I, scatter asn_cache->gpx_qsubmit asn_cache tblastn_wnode Seed Protein Alignments I, execute asn_cache->tblastn_wnode asn_cache uniColl_asn_cache uniColl_asn_cache uniColl_asn_cache->gpx_qsubmit uniColl_asn_cache uniColl_asn_cache->tblastn_wnode uniColl_asn_cache blastdb_dir blastdb_dir blastdb_dir->gpx_qsubmit blastdb_dir blastdb_dir->tblastn_wnode blastdb_dir db_gencode db_gencode db_gencode->tblastn_wnode db_gencode seqids seqids seqids->gpx_qsubmit seqids blast_align blast_align gpx_make_outputs Seed Protein Alignments I, gather gpx_make_outputs->blast_align gpx_qsubmit->tblastn_wnode input_jobs tblastn_wnode->gpx_make_outputs input_path
Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
seqids File
asn_cache Directory
db_gencode Integer
blastdb_dir Directory
uniColl_asn_cache Directory

Steps

ID Runs Label Doc
gpx_qsubmit
gpx_qsubmit_1.cwl (CommandLineTool)
Seed Protein Alignments I, scatter
tblastn_wnode
tblastn_wnode_1.cwl (CommandLineTool)
Seed Protein Alignments I, execute
gpx_make_outputs
gpx_make_outputs.cwl (CommandLineTool)
Seed Protein Alignments I, gather

Outputs

ID Type Label Doc
blast_align File
Permalink: https://w3id.org/cwl/view/git/5ec226c941562124032ca6861bc8d1aeabf9d91a/protein_alignment/wf_seed_1.cwl