Workflow: genomics-workspace-transcript.cwl

Fetched 2023-01-09 02:24:28 GMT
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workflow cluster_inputs Workflow Inputs managePy_Path managePy_Path showblast showblast managePy_Path->showblast managePy_Path populatesequence populatesequence managePy_Path->populatesequence managePy_Path makeblastdb makeblastdb managePy_Path->makeblastdb managePy_Path addblast addblast managePy_Path->addblast managePy_Path blastdb_Path blastdb_Path addfile_2_db addfile_2_db blastdb_Path->addfile_2_db blastdb_Path tree tree tree->addblast tree in_fasta_transcript in_fasta_transcript in_fasta_transcript->showblast in_fasta in_fasta_transcript->populatesequence in_fasta in_fasta_transcript->makeblastdb in_fasta in_fasta_transcript->addblast in_fasta in_fasta_transcript->addfile_2_db in_fasta in_dummy in_dummy scientific_name scientific_name scientific_name->addblast scientific_name populatesequence->showblast in_dummy makeblastdb->populatesequence in_dummy addblast->makeblastdb in_dummy addfile_2_db->addblast in_dummy
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Inputs

ID Type Title Doc
tree String[]
in_dummy File
blastdb_Path String[]
managePy_Path String
scientific_name String[]
in_fasta_transcript File

Steps

ID Runs Label Doc
addblast
addblast-transcript.cwl (CommandLineTool)
showblast
showblast.cwl (CommandLineTool)
makeblastdb
makeblastdb.cwl (CommandLineTool)
addfile_2_db
addfile_2_db.cwl (CommandLineTool)
populatesequence
populatesequence.cwl (CommandLineTool)

Outputs

There are no outputs in this workflow

Permalink: https://w3id.org/cwl/view/git/7562bd2c6900b30bce6c6f78951cd76d28218f47/flow_genomicsWorkspace/genomics-workspace-transcript.cwl