Workflow: Per-region pindel

Fetched 2023-01-05 07:19:34 GMT
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workflow cluster_inputs Workflow Inputs cluster_outputs Workflow Outputs normal_bam normal_bam pindel pindel v0.2.5b8 normal_bam->pindel normal_bam tumor_sample_name tumor_sample_name tumor_sample_name->pindel tumor_sample_name reference reference reference->pindel reference region_file region_file region_file->pindel region_file insert_size insert_size insert_size->pindel insert_size tumor_bam tumor_bam tumor_bam->pindel tumor_bam normal_sample_name normal_sample_name normal_sample_name->pindel normal_sample_name per_region_pindel_out per_region_pindel_out cat cat pindel->cat pindel_outs pindel->cat pindel_outs pindel->cat pindel_outs pindel->cat pindel_outs pindel->cat pindel_outs cat->per_region_pindel_out
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Inputs

ID Type Title Doc
reference File
tumor_bam File
normal_bam File
insert_size Integer
region_file File
tumor_sample_name String
normal_sample_name String

Steps

ID Runs Label Doc
cat
../tools/cat_out.cwl (CommandLineTool)
pindel
../tools/pindel.cwl (CommandLineTool)
pindel v0.2.5b8

Outputs

ID Type Label Doc
per_region_pindel_out File
Permalink: https://w3id.org/cwl/view/git/844c10a4466ab39c02e5bfa7a210c195b8efa77a/definitions/subworkflows/pindel_cat.cwl