- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
chunks | Integer | ||
pcr_free | Boolean | ||
library_cram | File | ||
intersect_file | File | ||
ref_fasta_files | File[] | ||
haploid_chromosome_regex | String |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
cap_crams |
capmq.cwl
(Workflow)
|
||
cram_get_fasta |
cram-get-fasta.cwl
(Workflow)
|
||
haplotype_caller_diploid |
gatk-4.0.0.0-haplotypecaller.cwl
(Workflow)
|
||
haplotype_caller_haploid |
gatk-4.0.0.0-haplotypecaller.cwl
(Workflow)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
reference | File | ||
intervals_diploid | File[] | ||
intervals_haploid | File[] | ||
gvcf_files_diploid | File[] | ||
gvcf_files_haploid | File[] |
Permalink:
https://w3id.org/cwl/view/git/8d9c9155a49045762cbf5a1e584fc20517b8be87/cwl/workflows/gatk-4.0.0.0-library-cram-to-gvcfs.cwl