Workflow: vg_basic_workflow.cwl
Fetched 2023-01-04 03:11:42 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| my_genomic_varients | File [VCF] | ||
| my_reference_genome | File [FASTA] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| construct_graph |
vg_construct.cwl
(CommandLineTool)
|
Construct a genome graph |
Includes both the reference sequences and alternative alleles |
| generate_layout |
vg_view.cwl
(CommandLineTool)
|
Represent a genome graph in graphviz .dot format | |
| render_pretty_picture_of_graph |
render_pdf_from_dot.cwl
(CommandLineTool)
|
Create a pretty PDF |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| genome_graph | File | ||
| pretty_picture | File [format] |
Permalink:
https://w3id.org/cwl/view/git/92a900c345fd3f01604afa633c00810f59c4b413/2018_matsue_biohackathon/vg_basic_workflow.cwl
