Workflow: wf-variantcall.cwl
Fetched 2023-01-12 11:24:40 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| batch_rec | https://w3id.org/cwl/view/git/a297e87e014de998b8df9c90700c29173ec09932/NA12878-chr20/NA12878-platinum-chr20-workflow-arvados/wf-variantcall.cwl#batch_rec/batch_rec[] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| compare_to_rm |
steps/compare_to_rm.cwl
(CommandLineTool)
|
||
| get_parallel_regions |
steps/get_parallel_regions.cwl
(CommandLineTool)
|
||
| postprocess_variants |
steps/postprocess_variants.cwl
(CommandLineTool)
|
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| variantcall_batch_region |
steps/variantcall_batch_region.cwl
(CommandLineTool)
|
||
| concat_batch_variantcalls |
steps/concat_batch_variantcalls.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| vc_rec | https://w3id.org/cwl/view/git/a297e87e014de998b8df9c90700c29173ec09932/NA12878-chr20/NA12878-platinum-chr20-workflow-arvados/wf-variantcall.cwl#vc_rec/vc_rec[] |
Permalink:
https://w3id.org/cwl/view/git/a297e87e014de998b8df9c90700c29173ec09932/NA12878-chr20/NA12878-platinum-chr20-workflow-arvados/wf-variantcall.cwl
