Workflow: trnascan_wnode and gpx_qdump combined

Fetched 2023-01-10 01:21:56 GMT
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workflow cluster_inputs Workflow Inputs cluster_outputs Workflow Outputs taxon_db taxon_db Run_tRNAScan_wnode Run tRNAScan, execution taxon_db->Run_tRNAScan_wnode taxon_db gcode_othmito gcode_othmito gcode_othmito->Run_tRNAScan_wnode gcode_othmito asn_cache asn_cache asn_cache->Run_tRNAScan_wnode asn_cache input_jobs input_jobs input_jobs->Run_tRNAScan_wnode input_jobs superkingdom superkingdom superkingdom->Run_tRNAScan_wnode superkingdom taxid taxid taxid->Run_tRNAScan_wnode taxid intermediate intermediate Run_tRNAScan_dump Run tRNAScan, gather Run_tRNAScan_wnode->Run_tRNAScan_dump input_path Run_tRNAScan_dump->intermediate
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Inputs

ID Type Title Doc
taxid Integer
taxon_db File
asn_cache Directory
input_jobs File
superkingdom Integer
gcode_othmito String (Optional)

Steps

ID Runs Label Doc
Run_tRNAScan_dump
gpx_qdump.cwl (CommandLineTool)
Run tRNAScan, gather
Run_tRNAScan_wnode
trnascan_wnode.cwl (CommandLineTool)
Run tRNAScan, execution

Outputs

ID Type Label Doc
intermediate File
html json turtle jsonld rdfxml svg png dot zip ro yaml raw
Permalink: https://w3id.org/cwl/view/git/a402541b8530f30eab726c160da90a23036847a1/bacterial_trna/wf_scan_and_dump.cwl