Workflow: Seed Search Compartments

Fetched 2023-01-10 02:20:20 GMT
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workflow cluster_inputs Workflow Inputs cluster_outputs Workflow Outputs compartments compartments gpx_qsubmit Seed Search Compartments, scatter compartments->gpx_qsubmit asn tblastn_wnode Seed Search Compartments, execute" compartments->tblastn_wnode asn db_gencode db_gencode db_gencode->tblastn_wnode db_gencode uniColl_asn_cache uniColl_asn_cache uniColl_asn_cache->gpx_qsubmit uniColl_asn_cache uniColl_asn_cache->tblastn_wnode uniColl_asn_cache asn_cache asn_cache asn_cache->gpx_qsubmit asn_cache asn_cache->tblastn_wnode asn_cache blast_align blast_align gpx_dump Seed Search Compartments, gather gpx_dump->blast_align gpx_qsubmit->tblastn_wnode input_jobs tblastn_wnode->gpx_dump input_path
Workflow as SVG
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  • Default Values
  • Nested Workflows
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  • Inputs/Outputs

Inputs

ID Type Title Doc
asn_cache Directory
db_gencode Integer
compartments File
uniColl_asn_cache Directory

Steps

ID Runs Label Doc
gpx_dump
gpx_qdump.cwl (CommandLineTool)
Seed Search Compartments, gather
gpx_qsubmit
gpx_qsubmit.cwl (CommandLineTool)
Seed Search Compartments, scatter
tblastn_wnode
tblastn_wnode.cwl (CommandLineTool)
Seed Search Compartments, execute\"

Outputs

ID Type Label Doc
blast_align File
html json turtle jsonld rdfxml svg png dot zip ro yaml raw
Permalink: https://w3id.org/cwl/view/git/a402541b8530f30eab726c160da90a23036847a1/protein_alignment/wf_seed.cwl