Workflow: Seed Protein Alignments

Fetched 2023-01-10 02:15:20 GMT
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workflow cluster_inputs Workflow Inputs cluster_outputs Workflow Outputs seqids seqids gpx_qsubmit Seed Protein Alignments, scatter seqids->gpx_qsubmit seqids blastdb_dir blastdb_dir tblastn_wnode Seed Protein Alignments, execute blastdb_dir->tblastn_wnode blastdb_dir blastdb_dir->gpx_qsubmit blastdb_dir uniColl_asn_cache uniColl_asn_cache uniColl_asn_cache->tblastn_wnode uniColl_asn_cache uniColl_asn_cache->gpx_qsubmit uniColl_asn_cache asn_cache asn_cache asn_cache->tblastn_wnode asn_cache asn_cache->gpx_qsubmit asn_cache db_gencode db_gencode db_gencode->tblastn_wnode db_gencode blast_align blast_align gpx_make_outputs Seed Protein Alignments, gather tblastn_wnode->gpx_make_outputs input_path gpx_make_outputs->blast_align gpx_qsubmit->tblastn_wnode input_jobs
Workflow as SVG
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Inputs

ID Type Title Doc
seqids File
asn_cache Directory
db_gencode Integer
blastdb_dir Directory
uniColl_asn_cache Directory

Steps

ID Runs Label Doc
gpx_qsubmit
gpx_qsubmit_1.cwl (CommandLineTool)
Seed Protein Alignments, scatter
tblastn_wnode
tblastn_wnode_1.cwl (CommandLineTool)
Seed Protein Alignments, execute
gpx_make_outputs
gpx_make_outputs.cwl (CommandLineTool)
Seed Protein Alignments, gather

Outputs

ID Type Label Doc
blast_align File
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Permalink: https://w3id.org/cwl/view/git/a402541b8530f30eab726c160da90a23036847a1/protein_alignment/wf_seed_1.cwl